Citrus Sinensis ID: 001160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1134 | 2.2.26 [Sep-21-2011] | |||||||
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | yes | no | 0.966 | 0.969 | 0.674 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.971 | 0.983 | 0.660 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.986 | 0.985 | 0.634 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.959 | 0.961 | 0.653 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.964 | 0.987 | 0.615 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.276 | 0.231 | 0.270 | 2e-17 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.523 | 0.389 | 0.216 | 4e-14 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.432 | 0.291 | 0.221 | 5e-12 | |
| Q12788 | 808 | Transducin beta-like prot | yes | no | 0.420 | 0.590 | 0.209 | 8e-11 | |
| Q2KJJ5 | 800 | Transducin beta-like prot | yes | no | 0.401 | 0.568 | 0.213 | 2e-10 |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function desciption |
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Score = 1561 bits (4043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1129 (67%), Positives = 897/1129 (79%), Gaps = 33/1129 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR P P NNPL+G IPKAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGP-PNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + + SSKP IN++ A+ +A A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSE---------SSKP-AINSIAAAAAAAATSA- 706
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 707 --GHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLS 1061
Query: 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1115
++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1062 NSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1555 bits (4026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1146 (66%), Positives = 895/1146 (78%), Gaps = 44/1146 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR P P NNPL+G +PKA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIR-TGQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ +DN IK++ANSDG+RLL +E + + SSKP IN++ P
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSE---------SSKP-AINSI-----------P 696
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ERP VSI + D +VDVKP + E+ DK K W++ ++ +PSQ ++LRLP
Sbjct: 697 MVERP---ASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752
Query: 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+TNSG ++LALASNA+H LWKWQR +RN +GKATA++ PQ WQP SG
Sbjct: 753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 813 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLEC 1006
LC+W+ D WEK KS+ +Q P GR + + +T+VQFH DQ H LVVHE+Q+++Y+ +KLEC
Sbjct: 932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W +++ API+ A +SCD L+Y F D I VF + LR RCR+ PSAY+P
Sbjct: 992 MKQWPVRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050
Query: 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPL 1126
++ HPLVIA HP E N A+G+SDG VH+ EP ++E KWG P +NG + ++ P +
Sbjct: 1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSV 1110
Query: 1127 TGQPSE 1132
S+
Sbjct: 1111 GASASD 1116
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1503 bits (3891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1145 (63%), Positives = 893/1145 (77%), Gaps = 26/1145 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM++FED V AGEWD+VE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD++D AKAV+ILVK+LKVFS+FNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKL FPS K+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C NGA P PT N L+G +PK G FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCG-HPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKH--PRTP-TGMTGMD 297
QP +P ++AGWM + PS+ HP+++AGP G P+SAV LK PR+P T MD
Sbjct: 240 QPTPAPLTTSLAGWMPN--PSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMD 297
Query: 298 YQSADSDHLMKRIRT-GQSD----------EVSFAGVAHTPNVYSQDDLTKTVVRTLNQG 346
YQ+ADS+ ++KR R G SD V++ G +H YS DDL K V R L+QG
Sbjct: 298 YQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQG 357
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S + SMDFHP QQT+LLVGTN+GDI++WEVGSRE+L + FKVWD++ ++ LQ +L ++
Sbjct: 358 SAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASE 417
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+VNR VW PDG +LGVA+SKHIVH+Y+Y+ +LR HLEIDAH G VND+AF+ PN+
Sbjct: 418 YTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQ 477
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
QLC+VTCG+DK IKVWD V G K +TFEGHEAPVYSVCPH KE+IQFIFSTA+DGKIKAW
Sbjct: 478 QLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
LYD +GSRVDYDAPG CT MAY ADGTRLFSCGTSKEGES +VEWNESEGA+KRTY G
Sbjct: 538 LYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGL 597
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
KRS+GVVQFDT +N+FL AGDEFQ+KFWDMD++++L++ A+GGLP+SP LR NKEG+L
Sbjct: 598 GKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTL 657
Query: 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAI 706
LAV+T+DNGIKILAN++G R+L + R +D +R P ++ P+ +G +++
Sbjct: 658 LAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPI----VGTFGTPNSST 713
Query: 707 APTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+L +R P S++ L D L DVKPR+A+D +K K+W++ +IS+ SQ++ LRL
Sbjct: 714 GMSLSMGERSGPVASVTGLNG-DNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRL 772
Query: 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSG 826
PD++ ++VV+LIYTNSG ++LALA NA HKLWKWQ++ERN GKA +NV PQLWQP SG
Sbjct: 773 PDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSG 832
Query: 827 TLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATF 886
LMTND E E+ C ALSKNDSYVMSASGGK+SLFNMMTFK MT FM+PPPAAT
Sbjct: 833 VLMTNDTREGN-KEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATS 891
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
LAFHPQDNNIIAIGM+DSS+QIYNVRVDEVK+KLKGHQ R+TGLAFS LN LVSSGAD+
Sbjct: 892 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADS 951
Query: 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLE 1005
QLC+WS+D WEK S+ IQ P+G + T+VQFH DQ H+LVVH SQ+++Y++ KLE
Sbjct: 952 QLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLE 1011
Query: 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065
+ W PK++ ++ A+YSCD +YA F DG++ + A TL+ +CRIGP++Y+P+
Sbjct: 1012 NMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSNP 1070
Query: 1066 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPP 1125
S+ +P +A HPSEPNQ A+G++DG VHV+EP E KWG + +NG PS SS P
Sbjct: 1071 -SSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAPG 1129
Query: 1126 LTGQP 1130
QP
Sbjct: 1130 SDQQP 1134
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1465 bits (3792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 730/1117 (65%), Positives = 877/1117 (78%), Gaps = 29/1117 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR P N P V + + F P+G H GP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLP-VAAVARPSNFVPLGVHGGP 238
Query: 240 FQP--VVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPP--ASLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD ++G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIG-KIEHMD 706
Query: 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AAS 773
G PA I+ KPR + VDK K + +I DP+Q + + +PDS + S
Sbjct: 707 AGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVS 766
Query: 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI 833
KV RL+YTNSG+ +LAL SN V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND+
Sbjct: 767 KVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDV 826
Query: 834 NESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
E+ E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQD
Sbjct: 827 PENP--EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQD 884
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
NNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 885 NNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTA 944
Query: 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSP 1012
D WEK KS IQ P G+ VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W P
Sbjct: 945 DSWEKKKSSAIQLPPGKAP--VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVP 1002
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA-- 1070
++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P N+A
Sbjct: 1003 QEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQ-PTPNSAPI 1061
Query: 1071 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1107
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1062 FPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1383 bits (3579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/1129 (61%), Positives = 852/1129 (75%), Gaps = 35/1129 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN K+F+++V AGEWD+VE YL GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDRQ++AKAVEILV+DL+VFS+FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L NFR+NEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP+ +SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH-GP 239
WQHQLCKNPRPNPDIKTLFTDH+C NG P N P V + K +P +G H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCT-LPNGPLAPSAVNQP-VTTLTKPAAYPSLGPHVPF 238
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGM-DY 298
+ + GA+A WM++ S + + P QP + + LK PRTP G+ DY
Sbjct: 239 PPGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDY 298
Query: 299 QSADSDHLMKRIRTGQS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
Q+ D + LMKR+R S +EV++ A P +S +DL L+QGS V SM+F+P
Sbjct: 299 QNPDHE-LMKRLRPAPSVEEVTYPAPRQQAP--WSLEDLPTKAALALHQGSTVTSMEFYP 355
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
Q T+LLVG+ G+I+LWE+ +RERL +PFK+WD+S S Q + + ISV R W
Sbjct: 356 MQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAW 415
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +GVAF+KH++ LY ++ +LRQH EIDAHVG VND+AFA+PN+QLC++TCGDD
Sbjct: 416 SPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDD 475
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K+IKVWD V+GRK +TFEGH+APVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 476 KLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 534
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG WCT M YSADGTRLFSCGTSK+G+S LVEWNESEG+IKRTY F+K+ GVVQF
Sbjct: 535 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQF 594
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DT++N FLA G++ QIKFWDM+N+N+LT+ DA+GGLPA P LRFNK+G+LLAVTT+DNG
Sbjct: 595 DTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGF 654
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN G R LR +E A + R P + + P P ++V+ + +RG
Sbjct: 655 KILANPAGFRSLRAMETPASETMRTPVD-FKAVP-----GAPVASVNCKV-------ERG 701
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KV 775
P L +D S K R+ + DK KSW++ +I DPSQ LPD+ +S KV
Sbjct: 702 SPVRHSQMLNGVDPS-----KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
V+L+YTNSG +LAL SN + +LWKW E+NPSGKATA V PQ WQP SG LMTND++
Sbjct: 757 VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSG 816
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
E +A CIALSKNDSYVMSA+GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQDNN
Sbjct: 817 VN-LENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
+IAIGMEDS++ IYNVRVDEVK+KLKGHQ RITGLAFS LN LVSSGADAQ+C WSID
Sbjct: 876 VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1014
WEK KS IQ PAG+ + G+T+VQFH DQ +LVVHE+Q++V+D SK+EC R W P+D
Sbjct: 936 WEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993
Query: 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV 1074
+L APISSA+Y+C+ L+Y F DG IGVFDA++LR RCRI PSAY+P + PLV
Sbjct: 994 SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG--NQGLSPLV 1051
Query: 1075 IAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSN 1123
+A HP +PNQ A+G++DG+V ++EP++ E KWG P + PS +SN
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSN 1100
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 149/359 (41%), Gaps = 45/359 (12%)
Query: 308 KRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGT 366
+R+ +G D HT ++ D + T +TL GS+V+S+ F P Q V +
Sbjct: 938 QRVASGSDD--------HTIKIW--DAASGTCTQTLEGHGSSVLSVAFSPDGQR---VAS 984
Query: 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426
GD K K+WD ++ + L SV + PDG +
Sbjct: 985 GSGD--------------KTIKIWDTASGTC---TQTLEGHGGSVWSVAFSPDGQRVASG 1027
Query: 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ ++ +G Q LE H G V + F+ P+ Q + + DD IK+WD V+
Sbjct: 1028 SDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-PDGQR-VASGSDDHTIKIWDAVS 1082
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546
G T EGH V+SV Q + S +IDG IK W + G W
Sbjct: 1083 GTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHS 1140
Query: 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA 606
+A+S DG R+ S S +G + W+ + G +T G + V F R +
Sbjct: 1141 VAFSPDGQRVAS--GSIDGTIKI--WDAASGTCTQTLEG-HGGWVQSVAFSPDGQRVASG 1195
Query: 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665
+ IK WD + T++ GG S + F+ +G +A +SDN IKI + G
Sbjct: 1196 SSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTASGT 1252
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 157/725 (21%), Positives = 273/725 (37%), Gaps = 131/725 (18%)
Query: 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLND 406
+V+++ F P + + G + G + WE + +E L K W
Sbjct: 866 SVLTVAFSPDGK-LFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
VN + DG ML V L+ + L+ H V + F+ PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKT---FKGHTSRVRSVVFS-PNS 960
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
L + + D+ +++WD+ +G Y F+GH VYSV + S+ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDYLGSRVDYDAPGNWCTM--MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584
D S+ Y G+ + + +S+DG L S + + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644
G VV F + GD+ ++ WD+ + N L T+ + +RF
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQG-----YTSWVRF---- 1121
Query: 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704
+ S NG+ LAN +++R+ + ISSK G + V+A
Sbjct: 1122 ----LVFSPNGVT-LANGSSDQIVRLWD-------------ISSKKCLYTLQGHTNWVNA 1163
Query: 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDV-KPRVAEDVDKIKSWRIPDISDPSQIKA 763
P +++S RL D+ + + SW + +P
Sbjct: 1164 VAFS--------PDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDG--- 1212
Query: 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP----Q 819
S ++ + VRL NS L H W NP G A+ + +
Sbjct: 1213 -STLASGSSDQTVRLWEINSSKCLCTFQG---HTSWV-NSVVFNPDGSMLASGSSDKTVR 1267
Query: 820 LWQPPSGTLM------TNDINESKPTEESAACIALSKNDSYVMSASGGK-VSLFNMMTFK 872
LW S + TN +N +A + + S + S SG + V L+ + + K
Sbjct: 1268 LWDISSSKCLHTFQGHTNWVNS----------VAFNPDGSMLASGSGDQTVRLWEISSSK 1317
Query: 873 VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAF 932
+ F + + F P D ++A G +D +V+++++ E GH N + + F
Sbjct: 1318 CLHTFQGHTSWVSSVTFSP-DGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIF 1376
Query: 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992
SP L S D + +WSI + L + +Q HN+ +V
Sbjct: 1377 SPDGAILASGSGDQTVRLWSISSGKCLYT------------------LQGHNNWVGSIVF 1418
Query: 993 H-ESQISVYDSKLECSRSW--SPKDALPA------PISSAIYSCDGLLVYAGFCDGAIGV 1043
+ + S + R W S + L + S +S DGL++ +G D I +
Sbjct: 1419 SPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKL 1478
Query: 1044 FDAET 1048
+D +T
Sbjct: 1479 WDVKT 1483
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 130/588 (22%), Positives = 225/588 (38%), Gaps = 97/588 (16%)
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465
DA SV+ + PDG + S + L+ + L+ I H VN++ F+
Sbjct: 1114 DAVYSVS---FSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDG 1167
Query: 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525
K L + D IK+WD +G+ T GH A V +V Q I + + D +K
Sbjct: 1168 KNLA--SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKL 1223
Query: 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585
W + +W +++S DG L S K + W ++G + +T G
Sbjct: 1224 WHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG 1279
Query: 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645
S+ V F + +A + IK W+ + + T GG+ A + F + +
Sbjct: 1280 -HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSN 1335
Query: 646 LLAVTTSDNGIK-----------ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTIN 694
++A + DN I+ +LA + GV + L ++ I
Sbjct: 1336 IIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVSFLHDGSI----------------IA 1379
Query: 695 ALGPASNVS------AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748
G N+ ++ TL ++ +S + G + S D +K
Sbjct: 1380 TAGADGNIQLWHSQDGSLLKTLP-GNKAIYGISFTPQGDLIASANAD---------KTVK 1429
Query: 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW-----KWQR 803
WR+ D +K L D+ +V ++ ++ G +L + + + KLW K+++
Sbjct: 1430 IWRV---RDGKALKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKK 1482
Query: 804 TER-----------NPSGK----ATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CIA 847
T + +P GK A+A+ +LW SG L+ +S P +
Sbjct: 1483 TLKGHTDEVFWVSFSPDGKIIASASADKTIRLWDSFSGNLI-----KSLPAHNDLVYSVN 1537
Query: 848 LSKNDSYVMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906
+ + S + S S K V L+ ++ F +F P D IA ED +V
Sbjct: 1538 FNPDGSMLASTSADKTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTV 1596
Query: 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954
+I+ + + T L HQ + FSP L+S D +W D
Sbjct: 1597 KIWQID-GHLLTTLPQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFD 1643
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q12788|TBL3_HUMAN Transducin beta-like protein 3 OS=Homo sapiens GN=TBL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 110/526 (20%), Positives = 203/526 (38%), Gaps = 49/526 (9%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWD+V + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T +A+SADG + S G K +
Sbjct: 166 LLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKI----CII 221
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNR---------FLAAGDEFQIKFWD-MDNMN 621
W+ RT F V+ + ++ FL AGD+ ++ W+
Sbjct: 222 WDLQSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQC 281
Query: 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681
+ T G ++ T+D+ + +L + +RL + G
Sbjct: 282 VYTQAQPPGPGQELTHCTLAHTAGVVLTATADHNL-LLYEARSLRLQKQFAG-------- 332
Query: 682 PSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV--K 737
S + L + LGP + V A+ +P L+ + A I G D +DV K
Sbjct: 333 ----YSEEVLDVRFLGPEDSHVVVASNSPCLKVFELQTSACQILH-GHTDIVLALDVFRK 387
Query: 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVH 796
+ K +S RI ++ Q+ + S V + + S L S +
Sbjct: 388 GWLFASCAKDQSVRIWRMNKAGQVMCVA-QGSGHTHSVGTVCCSRLKESFLVTGSQDCTV 446
Query: 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856
KLW P + N AP +G ++ + ++ +A++ ND +
Sbjct: 447 KLWPL------PKALLSKNTAPD-----NGPILLQAQTTQRCHDKDINSVAIAPNDKLLA 495
Query: 857 SASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915
+ S + + L+ + +++ +F + F P D ++A D +++++ ++
Sbjct: 496 TGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMD-QVLATASADGTIKLWALQDFS 554
Query: 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+GH + +AF L+SSG+D + +W+I E +++
Sbjct: 555 CLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT 600
|
Homo sapiens (taxid: 9606) |
| >sp|Q2KJJ5|TBL3_BOVIN Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/548 (21%), Positives = 201/548 (36%), Gaps = 93/548 (16%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511
H V +AF P L + T G D ++VWDVV + F G V+ V H +
Sbjct: 108 HTAPVATMAF-DPTSTL-LATGGCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPAR 165
Query: 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571
+FS+A D I+ W A + T + +SADG + S G K V
Sbjct: 166 LLLFSSAADTSIRVWSLQERSCLAVLTAHYSAVTSLTFSADGHTMLSSGRDKI----CVI 221
Query: 572 WNESEGAIKRTYSGFRKRSLGV---------VQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ RT F V + + FL AGD+ ++ W+ +
Sbjct: 222 WDLRSLQATRTVPVFESVEAAVLLPEEPAPELGVKSAGLHFLTAGDQGALRVWEAASGRC 281
Query: 623 LTTVDADGGLPASPRLR-----------FNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671
+ A RLR + G LL+VT N +L ++ +RL +
Sbjct: 282 ---------VHAQQRLRGPGRELTHCTLAHAAGLLLSVTADHN--LLLYDARSLRLRKQF 330
Query: 672 EGRAMDKNRCPSEPISSKPLTINALGPASN--VSAAIAPTLERPDRGPPAVSISSLGTID 729
G S + L + LGP + V A+ +P L+ D A I G D
Sbjct: 331 AG------------YSEEVLDVRFLGPEDSHVVVASNSPCLKVFDLQTSACQILH-GHTD 377
Query: 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG--LSL 787
+DV + RL S A + +R+ N ++
Sbjct: 378 IVLALDV------------------------FRKGRLFASCAKDQSIRVWRMNKSGEVAC 413
Query: 788 LALASNAVHKLWK--WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT----EE 841
+A S H + R + + + +LW P L +E P +
Sbjct: 414 VAQGSGHTHSVGTICCSRLKETFLVTGSQDCTVKLWPLPEALLSKGTGHEGGPVFLQAQA 473
Query: 842 SAAC-------IALSKNDSYVMSASGGKVS-LFNMMTFKVMTMFMSPPPAATFLAFHPQD 893
+ C +A++ ND + + S + + L+ + +++ F + F P D
Sbjct: 474 TQHCHDKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMD 533
Query: 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
++A D +++++ ++ +GH + +AF L+SSG+D L +W+I
Sbjct: 534 -QVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTI 592
Query: 954 DKWEKLKS 961
E +++
Sbjct: 593 KNNECVRT 600
|
Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1134 | ||||||
| 255557965 | 1137 | conserved hypothetical protein [Ricinus | 0.998 | 0.995 | 0.895 | 0.0 | |
| 225454832 | 1135 | PREDICTED: protein TOPLESS [Vitis vinife | 0.997 | 0.996 | 0.860 | 0.0 | |
| 224128866 | 1099 | predicted protein [Populus trichocarpa] | 0.964 | 0.995 | 0.842 | 0.0 | |
| 115474917 | 1133 | Os08g0162100 [Oryza sativa Japonica Grou | 0.995 | 0.996 | 0.766 | 0.0 | |
| 357144889 | 1135 | PREDICTED: topless-related protein 1-lik | 0.987 | 0.986 | 0.773 | 0.0 | |
| 37806272 | 1150 | WD-40 repeat protein-like [Oryza sativa | 0.995 | 0.981 | 0.754 | 0.0 | |
| 304555573 | 1141 | ramosa 1 enhancer locus 2 [Zea mays] gi| | 0.992 | 0.986 | 0.769 | 0.0 | |
| 242078279 | 1136 | hypothetical protein SORBIDRAFT_07g00418 | 0.958 | 0.956 | 0.775 | 0.0 | |
| 168031165 | 1158 | predicted protein [Physcomitrella patens | 0.992 | 0.972 | 0.712 | 0.0 | |
| 168060004 | 1102 | predicted protein [Physcomitrella patens | 0.962 | 0.990 | 0.718 | 0.0 |
| >gi|255557965|ref|XP_002520011.1| conserved hypothetical protein [Ricinus communis] gi|223540775|gb|EEF42335.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2100 bits (5442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1015/1133 (89%), Positives = 1070/1133 (94%), Gaps = 1/1133 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEIL KDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILCKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP+FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPAFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNP-TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPRPNPDIKTLFTDHSC+P T+NGARPPPPTN+P+VGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCSPSTANGARPPPPTNSPIVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSPSPGAIAGWMSSN+PSLPHP++AAGPPG VQPSSA FLKHPRTPTGMTG+DYQ
Sbjct: 241 FQPVVSPSPGAIAGWMSSNNPSLPHPAVAAGPPGLVQPSSAAAFLKHPRTPTGMTGIDYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+RTGQSDEVSF+GVAHTPNVYS DDL KTV+R+L+QGSNVMSMDFHPQQQ
Sbjct: 301 SADSEHLMKRMRTGQSDEVSFSGVAHTPNVYSPDDLPKTVMRSLSQGSNVMSMDFHPQQQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SAASMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSAASMPLQAALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV LY YNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQLYAYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD VAGR+QYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAVAGRRQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADG+RLFSCGTSKEGESHLVEWNESEG IKRTYSGFRKRS GVVQFDTT
Sbjct: 541 PGLWCTMMAYSADGSRLFSCGTSKEGESHLVEWNESEGTIKRTYSGFRKRSSGVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+RFLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSRFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
ANSDG+RL+RMLE RA+DKNR PSEPI+SKPL +NALGP +NVS+ +A LER DR PPA
Sbjct: 661 ANSDGLRLIRMLESRAIDKNRSPSEPINSKPLIVNALGPVANVSSGLATALERVDRMPPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
V+ISSLGT+D SRLVDVKPR+++++DKIKSW+IPDI D S +KALRLPDSIA KVVRLI
Sbjct: 721 VAISSLGTMDSSRLVDVKPRISDELDKIKSWKIPDIVDQSHLKALRLPDSIATGKVVRLI 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTNSGL+LLALASNAVHKLWKWQR+ERNPSGKATA VAPQLWQPPSGTLMTNDI++SKP
Sbjct: 781 YTNSGLALLALASNAVHKLWKWQRSERNPSGKATAYVAPQLWQPPSGTLMTNDISDSKPA 840
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 841 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 900
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 901 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 960
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSRFIQAP GRQSPL GETKVQFHNDQTHLLVVHESQI++YDSKLEC RSW PKD L AP
Sbjct: 961 KSRFIQAPPGRQSPLAGETKVQFHNDQTHLLVVHESQIAIYDSKLECLRSWYPKDTLTAP 1020
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079
I+SAIYS DGLLVY GFCDGA+GVFDA++LR RCRI PSAYIP+ N A+PLVIA HP
Sbjct: 1021 IASAIYSSDGLLVYTGFCDGAVGVFDADSLRVRCRIAPSAYIPSSVAGNNAYPLVIAAHP 1080
Query: 1080 SEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1132
SEPNQIALGMSDGAVHVVEPSD ELKWGG SQDNG PSNSSNP L+GQ SE
Sbjct: 1081 SEPNQIALGMSDGAVHVVEPSDVELKWGGPSSQDNGSHPSNSSNPSLSGQQSE 1133
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454832|ref|XP_002275116.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297737353|emb|CBI26554.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2062 bits (5342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 974/1132 (86%), Positives = 1051/1132 (92%), Gaps = 1/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSAR IML+ELKKLIEANPLFRDKL+FP+FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARGIMLIELKKLIEANPLFRDKLTFPAFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPR NPDIKTLFTDH+C PT NGARPPPPTNNPLVGPIPKAG FPPIGAH PF
Sbjct: 181 WQHQLCKNPRSNPDIKTLFTDHACTPT-NGARPPPPTNNPLVGPIPKAGAFPPIGAHNPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSPGAIAGWMSS +PSLPH ++AAGPP VQPS+A FLKH RTPTG+TGMDYQS
Sbjct: 240 QPVVSPSPGAIAGWMSSTNPSLPHAAVAAGPPSLVQPSTAAAFLKHQRTPTGVTGMDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
DS+HLMKRIRTGQSDEVSF+GVAH PNVYSQDDL K+VVRT+ QGSNVMSMDFHPQQQT
Sbjct: 300 GDSEHLMKRIRTGQSDEVSFSGVAHAPNVYSQDDLPKSVVRTITQGSNVMSMDFHPQQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
+LLVGTNVGDISLWEVGSRERLAHKPFKVWDISA SMPLQ ALL DA ISVNRCVWGPDG
Sbjct: 360 VLLVGTNVGDISLWEVGSRERLAHKPFKVWDISACSMPLQTALLKDATISVNRCVWGPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
L+LGVAFSKHIV +YTYNPTGELRQHLEIDAH+GGVND+AFAHPNKQLCIVTCGDDK IK
Sbjct: 420 LILGVAFSKHIVQIYTYNPTGELRQHLEIDAHIGGVNDVAFAHPNKQLCIVTCGDDKTIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD GR+ YTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGRRLYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCTMMAYSADGTRLFSCGTSK+GESHLVEWNESEGAIKRTY GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTMMAYSADGTRLFSCGTSKDGESHLVEWNESEGAIKRTYLGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEFQIKFWDMDN N+LT V+A+GGLPASPRLRFNKEGSLLAVTT+DNGIKILA
Sbjct: 600 NRFLAAGDEFQIKFWDMDNTNILTAVEAEGGLPASPRLRFNKEGSLLAVTTNDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG+RL RMLE R M+ +R PSEPI+SKPL +NALGPA+NVSAA++P+LER DR PAV
Sbjct: 660 NNDGLRLTRMLESRPMEGHRGPSEPINSKPLIVNALGPAANVSAAMSPSLERSDRIQPAV 719
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780
SI++L T+D SRLVDVKP++++D++KIKSW+IPDI D SQ+KALRLPD + KVVRLIY
Sbjct: 720 SINNLATMDSSRLVDVKPKISDDLEKIKSWKIPDIVDQSQLKALRLPDPVTTGKVVRLIY 779
Query: 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840
TNSGL+LLAL SNAVHKLWKWQR+ERNP GK+TA V PQLWQP +GTLMTND ++ P E
Sbjct: 780 TNSGLALLALISNAVHKLWKWQRSERNPLGKSTAYVVPQLWQPANGTLMTNDTGDNNPPE 839
Query: 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900
ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAIG
Sbjct: 840 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIG 899
Query: 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960
MEDS++QIYNVRVDEVKTKLKGHQ R+TGLAFS LN LVSSGADAQLC+WSID WEK K
Sbjct: 900 MEDSTIQIYNVRVDEVKTKLKGHQKRVTGLAFSQILNCLVSSGADAQLCVWSIDGWEKRK 959
Query: 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPI 1020
SRFIQAPAGR SPLVG+TKVQFHNDQ HLLVVHESQI+VYDSKLEC RSWSPKD+LPAPI
Sbjct: 960 SRFIQAPAGRSSPLVGDTKVQFHNDQAHLLVVHESQIAVYDSKLECVRSWSPKDSLPAPI 1019
Query: 1021 SSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1080
SSAIYSCD +LVYAGF DGA+GVFDA++LR RCRI PSAYIP+ A+S+ +PLVIA HPS
Sbjct: 1020 SSAIYSCDSMLVYAGFGDGAVGVFDADSLRLRCRIAPSAYIPSPALSSGVYPLVIAAHPS 1079
Query: 1081 EPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1132
EPNQIALGMSDGAVHVVEP+D E KWGG P QDNG +PSNSSNP L+GQP+E
Sbjct: 1080 EPNQIALGMSDGAVHVVEPTDTEPKWGGQPPQDNGSIPSNSSNPALSGQPTE 1131
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128866|ref|XP_002328986.1| predicted protein [Populus trichocarpa] gi|222839220|gb|EEE77571.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1986 bits (5146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 955/1133 (84%), Positives = 1017/1133 (89%), Gaps = 39/1133 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDE+ERYLCGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL+FP FKSSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTS-NGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239
WQHQLCKNPR NPDIKTLF DHSC PT+ NGA PPPP+N PLVGPIPKAG FPPIGAHGP
Sbjct: 181 WQHQLCKNPRSNPDIKTLFIDHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGP 240
Query: 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQ 299
FQPVVSP+PGAIAGWMS+N+PSLPHP++AAGPP VQPSSA FLKHPRTPTGMTGM+YQ
Sbjct: 241 FQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ 300
Query: 300 SADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQ 359
SADS+HLMKR+R GQS+EVSF+G+AHTPN+YSQDDL KTVVRTLNQGSNVMSMDFHPQ Q
Sbjct: 301 SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQ 360
Query: 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419
TILLVGTNVGDISLWEVGSRERLAHKPFKVWD+SA+SMPLQ ALLNDAAISVNRCVWGPD
Sbjct: 361 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPLQTALLNDAAISVNRCVWGPD 420
Query: 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479
GLMLGVAFSKHIV +YTYNPTGE RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI
Sbjct: 421 GLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 480
Query: 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539
KVWD AG +QY FEGHEAPVYS+CPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDA
Sbjct: 481 KVWDAGAGGRQYIFEGHEAPVYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDA 540
Query: 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599
PG WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG+IKRTY GFRKRSL VVQFDTT
Sbjct: 541 PGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT 600
Query: 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659
R+ FLAAGDEFQIKFWDMDN NMLT VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL
Sbjct: 601 RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 660
Query: 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719
A+SDG+RL+RMLE RA+DK+R PSEPI+SKPL +NALG +NVS+ +A +LER DR PA
Sbjct: 661 ASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSVANVSSGLASSLERSDRIQPA 720
Query: 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779
VSI +LGT+D SRLVDVKPR+++D DK+KSW+ DI D SQ+KALRLPDSI A
Sbjct: 721 VSIGNLGTMDNSRLVDVKPRISDDTDKLKSWK-SDIVDSSQLKALRLPDSIVA------- 772
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
GKATA+ APQLWQPPSGT MTNDINESKP
Sbjct: 773 ------------------------------GKATASNAPQLWQPPSGTPMTNDINESKPA 802
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FMSPPPAATFLAFHPQDNNIIAI
Sbjct: 803 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAI 862
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS+VQIYNVRVDEVKTKLKGHQNRITGLAFS +LN LVSSGADAQLC+WSID WEK
Sbjct: 863 GMEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKK 922
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
K RFIQAP RQSPLVGET+VQFHNDQ HLLVVHESQI++YDSKLECSRSWSPKD L AP
Sbjct: 923 KMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIYDSKLECSRSWSPKDTLAAP 982
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079
ISSAIYS DG LVY GFCDGA+GVFDA++LR RCRI PSAYIP++ +TA+PLVIA HP
Sbjct: 983 ISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGSTAYPLVIAAHP 1042
Query: 1080 SEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1132
SEPNQIALGMSDGAVHVVEPSD E+KWGG SQDNG PSN+SNP +G SE
Sbjct: 1043 SEPNQIALGMSDGAVHVVEPSDVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSE 1095
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115474917|ref|NP_001061055.1| Os08g0162100 [Oryza sativa Japonica Group] gi|113623024|dbj|BAF22969.1| Os08g0162100 [Oryza sativa Japonica Group] gi|125560238|gb|EAZ05686.1| hypothetical protein OsI_27917 [Oryza sativa Indica Group] gi|371501278|dbj|BAL44266.1| ASP1 protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1852 bits (4797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1132 (76%), Positives = 986/1132 (87%), Gaps = 3/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVGPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVGPIPKSAAFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + FLKHPRTPT +DYQS
Sbjct: 241 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAFLKHPRTPTSAPAIDYQS 300
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR LNQGSNVMS+DFHP QQT
Sbjct: 301 ADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNLNQGSNVMSLDFHPVQQT 360
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 361 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 420
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 421 SILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 480
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 481 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 540
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 541 GHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 600
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVT ++NGIKILA
Sbjct: 601 NRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNREGSLLAVTANENGIKILA 660
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP +N LG SNVS+ +A ERPDR P V
Sbjct: 661 NTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVSSPMAVNSERPDRALPTV 720
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++ALR+PD+ A +SKVVRL+
Sbjct: 721 SMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRALRMPDTSATSSKVVRLL 780
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQP +G LM ND ++ P
Sbjct: 781 YTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQPANGILMANDTSDGNP- 839
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 840 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 899
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSSGADAQLC WSID WEK
Sbjct: 900 GMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWSIDGWEKK 959
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+KLEC RSWSP++ALPAP
Sbjct: 960 KSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDAKLECLRSWSPREALPAP 1019
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSNTAHPLVIAPH 1078
ISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYI P+ + + +P+V+A H
Sbjct: 1020 ISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSMSSGGSVYPMVVAAH 1079
Query: 1079 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQP 1130
P EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S+ P +P
Sbjct: 1080 PLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTISAAPAAANKP 1131
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357144889|ref|XP_003573449.1| PREDICTED: topless-related protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1842 bits (4770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1126 (77%), Positives = 983/1126 (87%), Gaps = 6/1126 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDMVQGGEWDEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
LDNFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL GPIPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLAGPIPKSAGFPPMGAHAPF 240
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVV+P+ AIAGWM++ +PSLPH ++A GP G VQP + FLKHPRTPT G+DYQS
Sbjct: 241 QPVVTPN--AIAGWMTNANPSLPHAAVAQGPSGLVQPPNTAAFLKHPRTPTSAPGIDYQS 298
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H PN YSQ+DL K VVRTLNQGSNVMS+DFHP QQT
Sbjct: 299 ADSEHLMKRMRVGQPDEVSFSGASHPPNAYSQEDLPKQVVRTLNQGSNVMSLDFHPVQQT 358
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL+ DAAISVNRC+W PDG
Sbjct: 359 ILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAALMKDAAISVNRCLWSPDG 418
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P GELRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 419 NILGVAFSKHIVQTYTFVPNGELRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 478
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KE+IQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 479 VWDAQTGQKQYTFEGHEAPVYSVCPHYKENIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 538
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT M+YSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 539 GHWCTTMSYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 598
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
N FLAAGDEF +KFWDMDN N+LTT + DGGLPASPRLRFN+EGSLLAVT +DNGIKILA
Sbjct: 599 NHFLAAGDEFVVKFWDMDNTNILTTAECDGGLPASPRLRFNREGSLLAVTANDNGIKILA 658
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP IN LG ASNVS+ IA ERPDR PAV
Sbjct: 659 NTDGQRLLRMLESRAFEGSRGPQQ-INTKPPLINTLGSASNVSSPIAVNSERPDRMLPAV 717
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779
S+S L +D SR DVKPR+ ++ +K+K+W++ DI D I+A R PD+ + SKVVRL+
Sbjct: 718 SMSGLAPMDVSRTQDVKPRITDEAEKMKTWKLSDIVDSGHIRARRCPDTASNPSKVVRLL 777
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LL+L SNA HKLWKWQR++RNP+GK+TA+++P LWQPP+G LMTND ++ P
Sbjct: 778 YTNNGIALLSLCSNAGHKLWKWQRSDRNPTGKSTASISPHLWQPPNGILMTNDTSDGNP- 836
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 837 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 896
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVRVDEVK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 897 GMEDSTIQIYNVRVDEVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 956
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ PA LVG+T+VQFHNDQTH+LVVHESQ+++YD KLECSRSW P+DALPAP
Sbjct: 957 KSRYIQPPANHSGALVGDTRVQFHNDQTHVLVVHESQLAIYDGKLECSRSWYPRDALPAP 1016
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI-PTYAVSNTAHPLVIAPH 1078
+SSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI SAYI P+ + +P+VIA H
Sbjct: 1017 VSSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIALSAYIPPSMPSGGSVYPMVIAAH 1076
Query: 1079 PSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1124
P EPNQIA+GMSDGAVHVVEP D + KWG P QDNG PS SS P
Sbjct: 1077 PLEPNQIAVGMSDGAVHVVEPLDTDTKWGVAPPQDNGAHPSMSSAP 1122
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37806272|dbj|BAC99788.1| WD-40 repeat protein-like [Oryza sativa Japonica Group] gi|125602281|gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 867/1149 (75%), Positives = 985/1149 (85%), Gaps = 20/1149 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQES F+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQS-- 178
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK SRLRTLINQ
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLRTLINQRDV 180
Query: 179 ---------------LNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVG 223
LNWQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PLVG
Sbjct: 181 ICMNNNVNIQIGNAPLNWQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPLVG 240
Query: 224 PIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGF 283
PIPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQP + F
Sbjct: 241 PIPKSAAFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQPPNTAAF 300
Query: 284 LKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTL 343
LKHPRTPT +DYQSADS+HLMKR+R GQ DEVSF+G +H N+Y+QDDL K VVR L
Sbjct: 301 LKHPRTPTSAPAIDYQSADSEHLMKRMRVGQPDEVSFSGASHPANIYTQDDLPKQVVRNL 360
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
NQGSNVMS+DFHP QQTILLVGTNVGDI +WEVGSRER+AHK FKVWDIS+ ++PLQ AL
Sbjct: 361 NQGSNVMSLDFHPVQQTILLVGTNVGDIGIWEVGSRERIAHKTFKVWDISSCTLPLQAAL 420
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463
+ DAAISVNRC+W PDG +LGVAFSKHIV Y + GELRQ EIDAH+GGVNDIAF+H
Sbjct: 421 MKDAAISVNRCLWSPDGSILGVAFSKHIVQTYAFVLNGELRQQAEIDAHIGGVNDIAFSH 480
Query: 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523
PNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKI
Sbjct: 481 PNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKI 540
Query: 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
KAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSK+G+SHLVEWNE+EGAIKRTY
Sbjct: 541 KAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKDGDSHLVEWNETEGAIKRTY 600
Query: 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643
+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+E
Sbjct: 601 NGFRKRSLGVVQFDTTRNRFLAAGDEFVVKFWDMDNTNILTTTDCDGGLPASPRLRFNRE 660
Query: 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703
GSLLAVT ++NGIKILAN+DG RLLRMLE RA + +R P + I++KP +N LG SNVS
Sbjct: 661 GSLLAVTANENGIKILANTDGQRLLRMLESRAYEGSRGPPQQINTKPPIVNTLGSVSNVS 720
Query: 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763
+ +A ERPDR P VS+S L +D SR DVKPR+ ++ +K+K+W++ DI D ++A
Sbjct: 721 SPMAVNSERPDRALPTVSMSGLAPMDVSRTPDVKPRITDESEKVKTWKLADIGDSGHLRA 780
Query: 764 LRLPDSIA-ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822
LR+PD+ A +SKVVRL+YTN+G++LLAL SNAVHKLWKWQRT+RNP+GK+TA+ PQ+WQ
Sbjct: 781 LRMPDTSATSSKVVRLLYTNNGVALLALGSNAVHKLWKWQRTDRNPNGKSTASFTPQMWQ 840
Query: 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPP 882
P +G LM ND ++ P EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPP
Sbjct: 841 PANGILMANDTSDGNP-EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPP 899
Query: 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS 942
AATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGH +ITGLAFS ++N LVSS
Sbjct: 900 AATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSS 959
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
GADAQLC WSID WEK KSR+IQ+PA R LVG+T+VQFHNDQTH+LVVHESQ+++YD+
Sbjct: 960 GADAQLCAWSIDGWEKKKSRYIQSPANRSGALVGDTRVQFHNDQTHILVVHESQLAIYDA 1019
Query: 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI- 1061
KLEC RSWSP++ALPAPISSAIYSCDGLL+YAGFCDGAIGVF+AE+LR RCRI PSAYI
Sbjct: 1020 KLECLRSWSPREALPAPISSAIYSCDGLLIYAGFCDGAIGVFEAESLRLRCRIAPSAYIP 1079
Query: 1062 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNS 1121
P+ + + +P+V+A HP EPNQIA+GMSDGAVHVVEP D++ KWG P QDNG P+ S
Sbjct: 1080 PSMSSGGSVYPMVVAAHPLEPNQIAVGMSDGAVHVVEPLDSDPKWGVAPPQDNGTHPTIS 1139
Query: 1122 SNPPLTGQP 1130
+ P +P
Sbjct: 1140 AAPAAANKP 1148
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|304555573|ref|NP_001167872.2| ramosa 1 enhancer locus 2 [Zea mays] gi|303387473|gb|ADM15670.1| ramosa 1 enhancer locus 2 [Zea mays] gi|303387475|gb|ADM15671.1| ramosa 1 enhancer locus 2 [Zea mays] gi|413917313|gb|AFW57245.1| ramosa1 enhancer locus2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1134 (76%), Positives = 982/1134 (86%), Gaps = 8/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGF+FNMKHFED VQ GEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKVEDNRYSMKIFFEIRKQKYLEALDR DRAKAVEILVKDLKVF+SFNEELFKEITQLLT
Sbjct: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFRQNEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FP FK+SRLRTLINQSLN
Sbjct: 121 LENFRQNEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLNFPPFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLFTDHSC +NGAR PPP N PL G IPK+ FPP+GAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHSCAAPTNGARAPPPANGPL-GSIPKSAGFPPMGAHAPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QPVVSPSP AIAGWM++ +PSLPH ++A GPPG VQ + FLKHPRTPT G+DYQS
Sbjct: 240 QPVVSPSPNAIAGWMTNANPSLPHAAVAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQS 299
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
ADS+HLMKR+R GQ DEVSF+G +H N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQT
Sbjct: 300 ADSEHLMKRMRVGQPDEVSFSGASHPANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQT 359
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
ILLVGTNVGDI++WEVGSRER+AHK FKVWDI + ++PLQ +L+ DAA+SVNRC+W PDG
Sbjct: 360 ILLVGTNVGDIAVWEVGSRERIAHKTFKVWDIGSCTLPLQASLMKDAAVSVNRCLWSPDG 419
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+LGVAFSKHIV YT+ P G+LRQ EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IK
Sbjct: 420 TILGVAFSKHIVQTYTFVPNGDLRQQAEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIK 479
Query: 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540
VWD G+KQYTFEGHEAPVYSVCPH+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAP
Sbjct: 480 VWDAQTGQKQYTFEGHEAPVYSVCPHYKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAP 539
Query: 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600
G+WCT MAYSADGTRLFSCGTSKEG+SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTR
Sbjct: 540 GHWCTTMAYSADGTRLFSCGTSKEGDSHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTR 599
Query: 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660
NRFLAAGDEF +KFWDMDN N+LTT D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILA
Sbjct: 600 NRFLAAGDEFLVKFWDMDNNNILTTTDCDGGLPASPRLRFNREGSLLAVTTSDNGIKILA 659
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
N+DG RLLRMLE RA + +R P + I++KP I ALGP SNVS+ IA ERPDR PAV
Sbjct: 660 NTDGQRLLRMLESRAFEGSRGPPQQINTKP-PIVALGPVSNVSSPIAVNAERPDRILPAV 718
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS-IAASKVVRLI 779
S S L +D SR DVKPR+ ++ +K+K+W++ DI D ++AL L D+ SK+VRL+
Sbjct: 719 STSGLAPMDASRTPDVKPRITDESEKVKTWKLADIVDNGHLRALHLTDTDTNPSKIVRLL 778
Query: 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839
YTN+G++LLAL SNAVHKLWKWQR++RNPSGK+TA+VAP LWQP +G LMTND N+ P
Sbjct: 779 YTNNGVALLALGSNAVHKLWKWQRSDRNPSGKSTASVAPHLWQPANGILMTNDTNDGNP- 837
Query: 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI 899
EE+ ACIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAI
Sbjct: 838 EEATACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAI 897
Query: 900 GMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959
GMEDS++QIYNVR+D+VK+KLKGHQ +ITGLAFS ++N LVSSGADAQLC+WSID WEK
Sbjct: 898 GMEDSTIQIYNVRIDDVKSKLKGHQKKITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKK 957
Query: 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019
KSR+IQ PA R LVG+T+VQFHNDQTHLLVVHESQ+ +YD L+C R WSP+DALPAP
Sbjct: 958 KSRYIQPPANRPGTLVGDTRVQFHNDQTHLLVVHESQLGIYDGNLDCLRLWSPRDALPAP 1017
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIP--TYAVSNTAHPLVIAP 1077
ISSAIYSCDGLLVYAGFCDGAIGVF+AE+LR RCRI PSAYIP A + +PLV+A
Sbjct: 1018 ISSAIYSCDGLLVYAGFCDGAIGVFEAESLRLRCRIAPSAYIPPSILACAGRVYPLVVAA 1077
Query: 1078 HPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPS 1131
HP EPNQIA+GMSDG VHVVEP D + KWG P QDNG P +P ++ PS
Sbjct: 1078 HPMEPNQIAIGMSDGKVHVVEPLDGDPKWGSAPPQDNGAHP--HPHPAISAAPS 1129
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242078279|ref|XP_002443908.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] gi|241940258|gb|EES13403.1| hypothetical protein SORBIDRAFT_07g004180 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1092 (77%), Positives = 950/1092 (86%), Gaps = 5/1092 (0%)
Query: 27 KLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALD 86
+LEQESGF+FNMKHFED VQ GEWDEVE+YL GFTKVEDNRYSMKIFFEIRKQKYLEALD
Sbjct: 25 RLEQESGFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALD 84
Query: 87 RQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVE 146
R DRAKAVEILVKDLKVF+SFNEELFKEITQLLTL+NFRQNEQLSKYGDTKSARNIML+E
Sbjct: 85 RHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLLE 144
Query: 147 LKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNP 206
LKKLIEANPLFRDKL+FP FK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSC
Sbjct: 145 LKKLIEANPLFRDKLNFPPFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCAA 204
Query: 207 TSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPS 266
+NGAR PPP N PLVG IPK+ FPP+GAH PFQPVVSPSP AIAGWM++ +PSLPH +
Sbjct: 205 PTNGARAPPPANGPLVGSIPKSAGFPPMGAHAPFQPVVSPSPNAIAGWMTNANPSLPHAA 264
Query: 267 MAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHT 326
+A GPPG VQ + FLKHPRTPT G+DYQSADS+HLMKR+R GQ DEVSF+G +H
Sbjct: 265 VAQGPPGLVQAPNTAAFLKHPRTPTSAPGIDYQSADSEHLMKRMRVGQPDEVSFSGASHP 324
Query: 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386
N+Y+Q+DL K V RTLNQGSNVMS+DFHP QQTILLVGTNVGDI++WEVGSRER+AHK
Sbjct: 325 ANMYTQEDLPKQVSRTLNQGSNVMSLDFHPVQQTILLVGTNVGDIAVWEVGSRERIAHKT 384
Query: 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446
FKVWDI + ++PLQ +L+ DAAISVNRC+W PDG +LGVAFSKHIV YT+ P G+LRQ
Sbjct: 385 FKVWDIGSCTLPLQASLMKDAAISVNRCLWSPDGTILGVAFSKHIVQTYTFVPNGDLRQQ 444
Query: 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506
EIDAH+GGVNDIAF+HPNK L I+TCGDDK+IKVWD G+KQYTFEGHEAPVYSVCPH
Sbjct: 445 AEIDAHIGGVNDIAFSHPNKTLSIITCGDDKLIKVWDAQTGQKQYTFEGHEAPVYSVCPH 504
Query: 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566
+KESIQFIFSTAIDGKIKAWLYD LGSRVDYDAPG+WCT MAYSADGTRLFSCGTSKEG+
Sbjct: 505 YKESIQFIFSTAIDGKIKAWLYDCLGSRVDYDAPGHWCTTMAYSADGTRLFSCGTSKEGD 564
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626
SHLVEWNE+EGAIKRTY+GFRKRSLGVVQFDTTRNRFLAAGDEF +KFWDMDN N+LTT
Sbjct: 565 SHLVEWNETEGAIKRTYNGFRKRSLGVVQFDTTRNRFLAAGDEFLVKFWDMDNNNILTTT 624
Query: 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686
D DGGLPASPRLRFN+EGSLLAVTTSDNGIKILAN+DG RLLRMLE RA + +R P + I
Sbjct: 625 DCDGGLPASPRLRFNREGSLLAVTTSDNGIKILANTDGQRLLRMLESRAFEGSRGPPQQI 684
Query: 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDK 746
++KP I ALGP SNVS+ IA ERPDR PAVS S L +D SR DVKPR+ ++ +K
Sbjct: 685 NTKP-PIVALGPVSNVSSPIAVNAERPDRILPAVSTSGLAPMDPSRTPDVKPRITDESEK 743
Query: 747 IKSWRIPDISDPSQIKALRLPDS-IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805
+K+W++ DI D ++AL L D+ SKVVRL+YTN+G++LLAL SNAVHKLWKWQR +
Sbjct: 744 VKTWKLADIVDNGHLRALHLTDTDTNPSKVVRLLYTNNGIALLALGSNAVHKLWKWQRGD 803
Query: 806 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865
RNPSGK+TA+VAP LWQP +G LMTND N+ P EE+ ACIALSKNDSYVMSASGGKVSL
Sbjct: 804 RNPSGKSTASVAPHLWQPANGILMTNDTNDGNP-EEATACIALSKNDSYVMSASGGKVSL 862
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
FNMMTFKVMT FM+PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVR+D+VK+KLKGHQ
Sbjct: 863 FNMMTFKVMTTFMAPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRIDDVKSKLKGHQK 922
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
+ITGLAFS ++N LVSSGADAQLC+WSID WEK KSR+IQ PA R LVG+T+VQFHND
Sbjct: 923 KITGLAFSQSMNVLVSSGADAQLCVWSIDGWEKKKSRYIQPPANRPGTLVGDTRVQFHND 982
Query: 986 QTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045
QTHLLVVHESQ+++YD LEC RSWSP+DALPAPISSAIYSCDGLLVYA FCDGAIGVF+
Sbjct: 983 QTHLLVVHESQLAIYDGNLECLRSWSPRDALPAPISSAIYSCDGLLVYAAFCDGAIGVFE 1042
Query: 1046 AETLRFRCRIGPSAYIP--TYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103
AE+LR RCRI PSAYIP A + +PLV+A HP EPNQIALGMSDG VHVVEP D +
Sbjct: 1043 AESLRLRCRIAPSAYIPPSILACAGRVYPLVVAAHPMEPNQIALGMSDGKVHVVEPLDGD 1102
Query: 1104 LKWGGTPSQDNG 1115
KWG P QDNG
Sbjct: 1103 PKWGTAPPQDNG 1114
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168031165|ref|XP_001768092.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680730|gb|EDQ67164.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1670 bits (4325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1160 (71%), Positives = 941/1160 (81%), Gaps = 34/1160 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ+GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQSGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPPTNNPLVG +PK G FPP+ H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPTNNPLVGGLPKQGAFPPLTTHSPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS A+AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 240 QPA-PPSASALAGWMANPNPPAPHAPVANGPAALTAPPNSATLLKRPRTPPSTTPTVDYQ 298
Query: 300 SADSDHLMKRIRTG-----QSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
SADS+HLMKR R G ++ V+ G +H N S DDL K V R+LNQGS VMSMDF
Sbjct: 299 SADSEHLMKRARPGIQSVDEAKTVNCVGPSHPQNNVSPDDLPKNVARSLNQGSCVMSMDF 358
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP Q +ILLVGTNVGDI +WEVGSR+RLA + FKVWDI+AASMP+Q AL+ D A+SVNR
Sbjct: 359 HPIQLSILLVGTNVGDIGIWEVGSRDRLAQRTFKVWDITAASMPMQAALVKDPAVSVNRT 418
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
VW PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCG
Sbjct: 419 VWNPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 478
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSR
Sbjct: 479 DDKTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSR 538
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVV
Sbjct: 539 VDYDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSSGVV 598
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNKEGSLLAVT+SDN
Sbjct: 599 QFDTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKEGSLLAVTSSDN 658
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
GIKILAN DG+++LR LE RA D NR P EP SKP N LG S +RP+
Sbjct: 659 GIKILANRDGMQMLRALEARAYDTNRAPPEPAVSKPPVGNTLGVVSTPGGGGG---DRPN 715
Query: 715 RGPPAVSISSLGTI--------------------DGSRLVDVKPRVAEDV-DKIKSWRIP 753
A S+ T+ +G R + KPR+ +D+ D+ KSW++
Sbjct: 716 SSSMAGSVMDGPTLNMGGSRVRPRDRVGNDHSGMEGGRTPETKPRIPDDIPDRSKSWKLT 775
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813
+I++ +Q + +RLPDS+ +KV RLIYTN+G++LLALASNAVHKLWKWQR ERN SGKAT
Sbjct: 776 EITEQNQCRTIRLPDSLPPNKVARLIYTNAGVALLALASNAVHKLWKWQRNERNVSGKAT 835
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
A+V PQLWQP SG LMTNDI+E+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKV
Sbjct: 836 ASVTPQLWQPASGILMTNDISETNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKV 894
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
MT FM PPPAATFLAFHPQDNNIIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS
Sbjct: 895 MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFS 954
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
TLN LVSSGADAQLCMW D WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVH
Sbjct: 955 NTLNVLVSSGADAQLCMWGTDGWEKKKSKFVQVQPGGRSPSIGDTRVQFHNDQVRLLVVH 1014
Query: 994 ESQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052
ESQ++VYD SKL+ R W P++ PA IS+A YSCD L+YAGF DG++GVFDAE+LR R
Sbjct: 1015 ESQLAVYDASKLDRLRQWVPQNPFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPR 1074
Query: 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQ 1112
CR+ P+ ++P+ +T +PLVIA HP+EPNQ ALG+SDG V V+EP ++E KWG P
Sbjct: 1075 CRLAPTVHVPSGVSGSTVYPLVIAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPA 1134
Query: 1113 DNGPLPSNSSNPPLTGQPSE 1132
DNG S P Q S+
Sbjct: 1135 DNGTASGVPSGPASGNQGSD 1154
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168060004|ref|XP_001781989.1| predicted protein [Physcomitrella patens subsp. patens] gi|162666562|gb|EDQ53213.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 1652 bits (4279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1138 (71%), Positives = 929/1138 (81%), Gaps = 46/1138 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FEDQVQ GEW+EVERYL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVQGGEWEEVERYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+QDRAKAV+ILVKDLKVFSSFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFSSFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSARNIML+ELKKLIEANPLFRDKL+FPS K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFRDKLAFPSLKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DH+C P NGAR PPP NNPLVG IPK G FP +G H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCGP-PNGARAPPPANNPLVGGIPKQGAFP-LGTHSPF 238
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTG-MDYQ 299
QP PS ++AGWM++ +P PH +A GP P ++ LK PRTP T +DYQ
Sbjct: 239 QPA-PPSASSLAGWMANPNPPAPHAPVANGPAALTAPPNSAALLKRPRTPPSTTPTVDYQ 297
Query: 300 SADSDHLMKRIRTG-QS-DEVSF-AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHP 356
SADS+HLMKR R G QS DEV G +H N S DDL K+V R+LNQGS VMSMDFHP
Sbjct: 298 SADSEHLMKRARPGVQSVDEVFVPGGTSHPQNNVSPDDLPKSVARSLNQGSCVMSMDFHP 357
Query: 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416
QQ++LLVGTNVGDI +WEVGSRE+LA + FKVWDI+AASMP+Q AL+ D A+SVNR VW
Sbjct: 358 IQQSVLLVGTNVGDIGIWEVGSREKLAQRTFKVWDITAASMPMQAALVKDPAVSVNRTVW 417
Query: 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476
PDG +LGVAFSKHIVH+Y YN +LRQHLEIDAHVGGVND+AF+HPNKQLC++TCGDD
Sbjct: 418 NPDGTLLGVAFSKHIVHIYAYNGGSDLRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 477
Query: 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536
K IKVWD GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD LGSRVD
Sbjct: 478 KTIKVWDAATGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDLLGSRVD 537
Query: 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596
YDAPG+WCT MAYSADGTRLFSCGTSK+GES+LVEWNESEGAIKRTYSGFRKRS GVVQF
Sbjct: 538 YDAPGHWCTTMAYSADGTRLFSCGTSKDGESYLVEWNESEGAIKRTYSGFRKRSAGVVQF 597
Query: 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656
DTTRNRFLAAGDEF IKFWDMDN N+LTT+DA+GGLPASPRLRFNK+GSLLAVTTSDNGI
Sbjct: 598 DTTRNRFLAAGDEFLIKFWDMDNTNLLTTIDAEGGLPASPRLRFNKDGSLLAVTTSDNGI 657
Query: 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716
KILAN DG+++LR LE RA D NR P EP SK
Sbjct: 658 KILANRDGMQMLRALEARAYDTNRVPPEPAVSK--------------------------- 690
Query: 717 PPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKV 775
++G R + KPR+ +++ D+ KSW++ +I++ +Q + +RLPDS+ +KV
Sbjct: 691 ---------SGMEGGRTPETKPRIPDEIPDRSKSWKLTEITEQNQCRTIRLPDSLPPNKV 741
Query: 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835
RLIYTN+G++LLALASNAVHKLWKWQR ERN +GKATA+V+PQLWQP SG LMTNDI+E
Sbjct: 742 ARLIYTNAGVALLALASNAVHKLWKWQRNERNINGKATASVSPQLWQPASGILMTNDISE 801
Query: 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895
+ P E++ CIALSKNDSYVMSASGGKVSLFNMMTFKVMT FM PPPAATFLAFHPQDNN
Sbjct: 802 TNP-EDAVPCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPAATFLAFHPQDNN 860
Query: 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955
IIAIGMEDS++QIYNVRVDEVK+KLKGHQ RITGLAFS TLN LVSSGADAQLCMW D
Sbjct: 861 IIAIGMEDSTIQIYNVRVDEVKSKLKGHQKRITGLAFSNTLNVLVSSGADAQLCMWGTDG 920
Query: 956 WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKD 1014
WEK KS+F+Q G +SP +G+T+VQFHNDQ LLVVHESQ++VY+ +KL+ R W P++
Sbjct: 921 WEKRKSKFVQVQPGGRSPSMGDTRVQFHNDQVRLLVVHESQLAVYEAAKLDRLRQWVPQN 980
Query: 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV 1074
PA IS+A YSCD L+YAGF DG++GVFDAE+LR RCR+ PS +IP +T +PLV
Sbjct: 981 PFPAAISNATYSCDSQLIYAGFVDGSVGVFDAESLRPRCRLAPSVHIPPGVSGSTVYPLV 1040
Query: 1075 IAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNPPLTGQPSE 1132
IA HP+EPNQ ALG+SDG V V+EP ++E KWG P DNG S P Q S+
Sbjct: 1041 IAAHPAEPNQFALGLSDGGVQVIEPLESEGKWGTGPPADNGTASGVPSGPASGNQGSD 1098
|
Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1134 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.966 | 0.969 | 0.659 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.958 | 0.961 | 0.646 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.614 | 0.622 | 0.706 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.311 | 0.477 | 0.382 | 1.2e-90 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.465 | 0.387 | 0.240 | 1e-21 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.139 | 0.298 | 0.294 | 5.6e-18 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.170 | 0.306 | 0.266 | 3.3e-12 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.213 | 0.419 | 0.274 | 7.1e-12 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.164 | 0.315 | 0.246 | 1.5e-10 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.173 | 0.588 | 0.259 | 1.9e-10 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3871 (1367.7 bits), Expect = 0., P = 0.
Identities = 745/1129 (65%), Positives = 877/1129 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC P NGAR KAG FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPP-NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++AG PS LKHPRTP +DY S
Sbjct: 240 QPTASPVPTPLAGWMSSPS-SVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEV---------SFAGVAH--TPNVYSQDDLTKTVVRTLNQGSN 348
ADS+H+ KR R G SDEV SF+G AH +P + DDL KTV RTL+QGS+
Sbjct: 298 ADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDI+F+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C++TCGDDK IKVWD G K++TFEGHEAPVYSVCPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDYDAPG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +D DGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
V+ ++N IKI+ANSDG+RLL E + SE SSKP IN++ A+ AA A
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENIS-------SE--SSKP-AINSIAAAA---AAAAT 704
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLP 767
+ DR VSI + D +VDVKP + E+ DK K W++ ++S+PSQ ++LRLP
Sbjct: 705 SAGHADRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLP 763
Query: 768 DSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827
+++ +K+ RLI+T +H LWKWQR ERN +GKATA++ PQ WQP SG
Sbjct: 764 ENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI 823
Query: 828 LMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFL 887
LMTND+ E+ P EE+ C ALSKNDSYVMSASGGK+SLFNMMTFK M FM PPPAATFL
Sbjct: 824 LMTNDVAETNP-EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 882
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
AFHPQDNNIIAIGM+DS++QIYNVRVDEVK+KLKGH RITGLAFS LN LVSSGADAQ
Sbjct: 883 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 942
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLEC 1006
LC+W+ D WEK +S+ + P GR + +T+VQFH DQ H LVVHE+Q+++Y++ KLEC
Sbjct: 943 LCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLEC 1002
Query: 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066
+ W+ +++L API+ A +SCD LVYA F D + VF + LR RCR+ PSAY+P
Sbjct: 1003 MKQWAVRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLS 1061
Query: 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNG 1115
++ HPLVIA HP EPN A+G+SDG VH+ EP ++E KWG P +NG
Sbjct: 1062 NSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENG 1110
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3690 (1304.0 bits), Expect = 0., P = 0.
Identities = 723/1118 (64%), Positives = 870/1118 (77%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+K+FE++ AGEWDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DRAKAVEIL KDLKVF++FNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR+IM ELKKLIEANPLFR+KL+FPSFK+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHG-P 239
WQHQLCKNPRPNPDIKTLF DHSC+P SNGAR + F P+G HG P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSP-SNGARALTPVNLPVAAVA-RPSNFVPLGVHGGP 238
Query: 240 FQ--PVVSPSPGAIAGWMSSNSPSLPHPS-MAAGPPGFVQPSSAVGFLKHPRTPTGMTG- 295
FQ P +P+ A+AGWM++ +PS PS + A P +QPS V LKHPR P+ G
Sbjct: 239 FQSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ-VNELKHPRAPSNSLGL 297
Query: 296 MDYQSADSDHLMKRIRTGQ-SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
MDYQSAD + LMKR+R+ Q S+EV++ +H P S DDL + VV T+ QGS V+SMDF
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA--SLDDLPRNVVSTIRQGSVVISMDF 355
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414
HP T+L VG + G+++LWEVGSRE++ +PFK+W+++A S+ Q +++ + +ISV R
Sbjct: 356 HPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRV 415
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
W PDG +LGV+F+KH++H+Y Y + +LRQHLEIDAHVG VND+AFAHPNKQ+C+VTCG
Sbjct: 416 AWSPDGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCG 474
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
DDK+IKVWD+ +G+K +TFEGHEAPVYS+CPH KE+IQFIFSTA+DGKIKAWLYD +GSR
Sbjct: 475 DDKLIKVWDL-SGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSR 533
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVV 594
VDYDAPG WCT M YSADG+RLFSCGTSKEG+S LVEWNESEGA+KRTY GFRK+S GVV
Sbjct: 534 VDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVV 593
Query: 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654
QFDTTRNRFLA G++ QIKFW+MDN N+LT V+A+GGLP PRLRFNK+G+LLAVTT+DN
Sbjct: 594 QFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADN 653
Query: 655 GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714
G KILAN+DG+R LR E R+ + ++ +S + ++ AS++S AI +E D
Sbjct: 654 GFKILANTDGLRTLRAFEARSFEASK------ASIDMKVSTSAMASSISPAIGK-IEHMD 706
Query: 715 RGPPAVSISSLGTIDG-SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI-AA 772
G PA I+ SR ++ KPR + VDK K + +I DP+Q + + +PDS +
Sbjct: 707 AGSPARPTPIPNGIEAMSRTME-KPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSV 765
Query: 773 SKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832
SKV RL+YT V +LWKW R E+NP+GKATA+V PQ WQP SG LM ND
Sbjct: 766 SKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMAND 825
Query: 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892
+ E+ P E S CIALSKNDSYVMSA GGKVSLFNMMTFKVMT FM PPPA+TFLAFHPQ
Sbjct: 826 VPEN-P-EGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 883
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
DNNIIAIGMEDSS+ IYNVRVDEVKTKLKGHQ ITGLAFS LN LVSSGADAQL W+
Sbjct: 884 DNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWT 943
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWS 1011
D WEK KS IQ P G+ +P VG+T+VQFHNDQ LLV HE+Q+++YD SK+EC W
Sbjct: 944 ADSWEKKKSSAIQLPPGK-AP-VGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWV 1001
Query: 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA- 1070
P++AL +PI+SA YSC+ LVYA F DG I VFDAE+LR RCRI PSAY+P N+A
Sbjct: 1002 PQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQ-PTPNSAP 1060
Query: 1071 -HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1107
P VI HP EPNQ+A+G+SDG+V V+EPS+ +WG
Sbjct: 1061 IFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWG 1098
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2622 (928.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 505/715 (70%), Positives = 577/715 (80%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEVERYLCGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMK+FED+V G WDEVE+YL GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
TKV+DNRYSMKIFFEIRKQKYLEALDR DR KAV+ILVKDLKVFS+FNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTKSAR IMLVELKKLIEANPLFRDKL FP+ ++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARXXXXXXXXXXXXXXKAGQFPPIGAHGPF 240
WQHQLCKNPRPNPDIKTLF DHSC N AR KA FPP+GAHGPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCR-LPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
QP SP P +AGWMSS S S+PHP+++ GP PS LKHPRTP + +DY S
Sbjct: 240 QPTPSPVPTPLAGWMSSPS-SVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPS 297
Query: 301 ADSDHLMKRIRT-GQSDEVS---------FAGVAHTPN--VYSQDDLTKTVVRTLNQGSN 348
DSDH+ KR R G SDEVS F G AH N + DDL KTV RTL+QGS+
Sbjct: 298 GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
MSMDFHP +QT+LLVGTNVGDI LWEVGSRERL K FKVWD+S SMPLQ AL+ +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+SVNR +W PDG + GVA+S+HIV LY+Y+ ++RQHLEIDAHVGGVNDIAF+ PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C+ TCGDDK IKVWD G K+YTFEGHEAPVYS+CPH+KE+IQFIFSTA+DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
D +GSRVDY+APG WCT MAYSADGTRLFSCGTSK+GES +VEWNESEGA+KRTY GF K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 589 RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648
RSLGVVQFDTT+NR+LAAGD+F IKFWDMD + +LT +DADGGL ASPR+RFNKEGSLLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNR--CPSEPISSKPLTINALGPASN 701
V+ +DN IK++ANSDG+RLL +E + + ++ S P+ +P ++ ++ P N
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSI-PGMN 711
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.2e-90, Sum P(2) = 1.2e-90
Identities = 141/369 (38%), Positives = 208/369 (56%)
Query: 754 DISDPSQIKALRLPDSIAASKVVRLIYTXXXXXXXXXXXXXVHKLWKWQRTERNPSGKAT 813
+I DPSQ AL LPD + K+ RL Y+ HKLW W ++ N K
Sbjct: 371 EIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFCKEN 429
Query: 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKV 873
P+L QP SG M N++ S ++S +C A+ SY+ S SGGK+++F++ F+
Sbjct: 430 VYPKPRLHQPQSGKTMENEMATS--VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEK 485
Query: 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933
+ F SP P AT+ F P D ++A+G++D S+ I+ + +VK KL+GH +IT LAFS
Sbjct: 486 VASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFS 543
Query: 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE---TKVQFHNDQTHLL 990
N LVSS +D +LC+WS W KL S+ +S L T +QF Q LL
Sbjct: 544 RCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELL 603
Query: 991 VVHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049
VVH+ I +Y+ + L+C W P + PA I+SA YS DG ++Y GF G+I + D++T
Sbjct: 604 VVHDGWIGLYEVRTLDCRLQWIPDASDPA-ITSATYSSDGEIIYVGFRCGSIKIVDSKTF 662
Query: 1050 RFRCRIGPSAY--IPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWG 1107
C+I +++ + T +S +P V+A HPS PNQI+ G+S+G V V++P + WG
Sbjct: 663 MTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG-GWG 721
Query: 1108 -GTPSQDNG 1115
P +DNG
Sbjct: 722 EAAPLEDNG 730
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 139/577 (24%), Positives = 241/577 (41%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD + + LQ L+ + +V + PDG +L + + L+ + TGEL Q
Sbjct: 775 KIWDPATGEL-LQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
E H + +AFA K+L + DD IK+WD+ G Q T + H V SV
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVA--F 884
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ + S+++D IK W + + W +A+S DG +L S G+ K +
Sbjct: 885 SPDGKLLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK---N 940
Query: 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
+ WN + G + +T G +S+ V F + ++ + IK W+ + T
Sbjct: 941 TVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFK 999
Query: 628 A-DGGLPASPRLRFNKEGSLLAVTTSDNGIKI--LANSDGVRLLRMLEGRAMDKNRCPSE 684
D + A + F+ +G L + DN IK+ LA S+ L + LE + +
Sbjct: 1000 GHDLWIRA---VAFSPDGKHLVSGSDDNTIKLWDLATSE---LQQSLEDHSRSVHAVAFS 1053
Query: 685 PISSKPLTINALGPA----SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740
P K L ++L + + + TLE +G +V+ S G + S D ++
Sbjct: 1054 P-DDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKL 1112
Query: 741 AEDVDKIKSWRIPDISDPSQIKALRLPDS--IAASKVVRLIYTXXXXXXXXXXXXXVHKL 798
+ + SD A PD +A+ I H
Sbjct: 1113 WNPLTGELQQTLTGRSDWVDSVAFS-PDGKQLASGYYDSTIKLWDSATGELLQTLEGHSD 1171
Query: 799 WKWQRTERNPSGKATANVA----PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854
+ Q +P GK A+ + +LW P +G L+ SK E +A S +
Sbjct: 1172 -RIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVES----VAFSPDGKL 1226
Query: 855 VMSASGGK-VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913
+ S+S G+ + L++ +T +++ P +A +AF P N + ++ + D+ +I++
Sbjct: 1227 LASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPAT 1284
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950
E+ LKGH + +S T A +S D LC+
Sbjct: 1285 GELLQALKGHSKWV----WSRT-GAGISIFLDQWLCL 1316
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 5.6e-18, Sum P(3) = 5.6e-18
Identities = 56/190 (29%), Positives = 88/190 (46%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KHFEDQVQAGEWDEVERYLCGF 60
S++++ LILQFL E ++ L++E+G N + F + V+ G WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LDNFRQNEQLS-----KYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLI 175
L+N Q E + KYG T R K+LIE L + ++ PS SRL +L+
Sbjct: 125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173
Query: 176 NQSLNWQ-HQ 184
+QSL+WQ HQ
Sbjct: 174 SQSLHWQKHQ 183
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 3.3e-12, Sum P(3) = 3.3e-12
Identities = 58/218 (26%), Positives = 99/218 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKHFEDQVQAGEWDEVERYLCGFT 61
++E++ LI Q+L + ++V L ESG + + F + V G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVEDNRYSMKIF---FEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQH-NITRVHQLSSY 215
Query: 119 LTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSS--RLRTLIN 176
+ + Q +K+ + K + LV +++L P PS S RLRTL+
Sbjct: 216 MMCSTNQDLYQRAKW-EGKGILSRALV-MERLQTFMP--------PSVMMSPRRLRTLLQ 265
Query: 177 QS--LNWQHQLCKNPRPNPDIKT--LFTDHSCNPTSNG 210
Q+ L QH C + +++T L TDH C T++G
Sbjct: 266 QAVELQSQHCPCHDMAWETNLETVSLLTDHCC--TTDG 301
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
K+WD S LQ+ L + + V ++ D +L A S V ++ TG L QH
Sbjct: 321 KIWDTETGS--LQHTLEGHSDL-VRSVIFSHDSRLLASA-SDSTVKIWDTG-TGSL-QHT 374
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
++ H V + F+H + QL + + DD +K+WD G Q+T EGH V SV H
Sbjct: 375 -LEGHRDWVRSVIFSH-DSQL-LASASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSH 431
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEG 565
Q + S + D +K W D + + G+ W + +S D +RL + S
Sbjct: 432 DS--QLLASASDDSTVKIW--DTGTGSLQHTLEGHRDWVRSVIFSHD-SRLLA---SASD 483
Query: 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625
+ + W+ +G+ K T G + V F +A ++ ++ WD++ ++ T
Sbjct: 484 DRTVRIWDTEKGSHKHTLEG-HSSLVTSVSFSHDSRLLASASNDQTVRIWDIEARSLQHT 542
Query: 626 VDADGGLPASPRLRFNKEGSL-LAVT 650
D D + A +RF+K SL + VT
Sbjct: 543 FDLDATIEA---MRFDKATSLWIQVT 565
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 50/203 (24%), Positives = 94/203 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYL--CGFT 61
E V +I + L + +T LE+ESG + +K F QV+ G+WD+ + L GF
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 62 KVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTL 121
D + F + +QK+LE L + A A+ L ++ + + + + L++
Sbjct: 127 ---DEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISP 183
Query: 122 DNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNW 181
+F + + ++ ++R+ +L EL+ L+ A+ + +K RL L+ SL+
Sbjct: 184 SSFISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHI 234
Query: 182 QHQLCKNPRPNPDIKTLFTDHSC 204
Q C +L++DH C
Sbjct: 235 QRDSCVFHNTLDSDLSLYSDHQC 257
|
|
| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 55/212 (25%), Positives = 106/212 (50%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLY-TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
S++ + PDG L A + + ++ Y+ G+ + LE H G++DIA++ +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYD--GKFERTLE--GHKEGISDIAWSQDSKLI 103
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY 528
C + DDK IK+WDV +G+ T +GH+ V+ V + + ++ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588
+ A + T + ++ DGT + S G S +G + W+ + G + T S
Sbjct: 160 NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTEDG 215
Query: 589 RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMDN 619
+ + V+F + +F+ AG + ++ W +N
Sbjct: 216 KEVSFVKF-SPNGKFVLAGTLDNTLRLWSYNN 246
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.6740 | 0.9664 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1134 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 4e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 61/231 (26%), Positives = 88/231 (38%), Gaps = 32/231 (13%)
Query: 336 TKTVVRTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISA 394
T VRTL S V S+ F P + IL + I +W+V + + L
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCL------------ 128
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
L VN + PDG + + + L+ TG+ + H G
Sbjct: 129 -------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR-TGKCVA--TLTGHTG 178
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
VN +AF+ ++L + D IK+WD+ G+ T GHE V SV +
Sbjct: 179 EVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG--YLL 234
Query: 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSK 563
S + DG I+ W D G N T +A+S DG RL S
Sbjct: 235 ASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 3e-22
Identities = 66/296 (22%), Positives = 108/296 (36%), Gaps = 46/296 (15%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALL 404
V + F P + + + G I +W++ + E L H V D++A L
Sbjct: 12 VTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHT-GPVRDVAA--SADGTYLA 67
Query: 405 ---NDAAISV-----NRCVW---GPDGLMLGVAFSKHI-----------VHLYTYNPTGE 442
+D I + CV G + VAFS + ++ TG+
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD-VETGK 126
Query: 443 LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
+ H VN +AF P+ + + D IK+WD+ G+ T GH V S
Sbjct: 127 CLT--TLRGHTDWVNSVAF-SPDGTF-VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLFSCG 560
V + S++ DG IK L+D + G N +A+S DG L S
Sbjct: 183 VAFSPDGE--KLLSSSSDGTIK--LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238
Query: 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+ + W+ G +T SG + + + R + + I+ WD
Sbjct: 239 ----EDGTIRVWDLRTGECVQTLSGHTNS-VTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-20
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 19/266 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
V + PDG +L + ++ TGEL + L+ H G V D+A + L
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLK--GHTGPVRDVAASADGTYL- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+ DK I++WD+ G T GH + V SV I + S++ D IK W +
Sbjct: 67 -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI--LSSSSRDKTIKVWDVE 123
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588
+W +A+S DGT + S S++G L W+ G T +G
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASS--SQDGTIKL--WDLRTGKCVATLTGHTGE 179
Query: 589 -RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL 647
S V F + L++ + IK WD+ L T+ S + F+ +G LL
Sbjct: 180 VNS---VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLL 234
Query: 648 AVTTSDNGIKILANSDGVRLLRMLEG 673
A + D I++ + ++ L G
Sbjct: 235 ASGSEDGTIRVW-DLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.1 bits (214), Expect = 1e-17
Identities = 71/310 (22%), Positives = 126/310 (40%), Gaps = 27/310 (8%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ S+ F P + +LL G++ G I LW++ + E+L +L
Sbjct: 68 ITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHD 109
Query: 409 ISVNRCVWG-PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV++ PDG + +A S + ++ + + ++ H V +AF P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPDGK 168
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L D IK+WD+ G+ T GH PV S+ + I S + DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 528 YDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
G + G+ + ++S DG+ L S S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASG--SSDGTIRL--WDLRSSSSLLRTLSG 282
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646
S+ V F + + ++ WD++ +L+++ G L F+ +GSL
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 647 LAVTTSDNGI 656
L SD+G
Sbjct: 343 LVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 40/209 (19%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
C+A S + + + SG G + ++++ T +++ +A + + D
Sbjct: 14 CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-D 72
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
+++++++ E L GH + ++ +AFSP L SS D + +W ++ +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKC 127
Query: 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDSKLECSRSWSPKDALPA---P 1019
+ G + V F D T + + I ++D R+ L
Sbjct: 128 LTTLRGHTDWV---NSVAFSPDGTFVASSSQDGTIKLWD-----LRTGKCVATLTGHTGE 179
Query: 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048
++S +S DG + + DG I ++D T
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (186), Expect = 3e-14
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 43/339 (12%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA---- 383
++ K + +V S+ F P + + + G I LW++ + + L+
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 384 HKPF-----------------------KVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
H ++WD+S L++ L + V+ + PDG
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS-TGKLLRSTLSGHSDSVVS--SFSPDG 253
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480
+L S + L+ + L + L H V +AF P+ +L + D ++
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAF-SPDGKLLA-SGSSDGTVR 309
Query: 481 VWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538
+WD+ G+ T +GHE PV S+ + + + DG I+ W +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
+ +++S DG + S T + W+ S G++ R G R + F
Sbjct: 369 G-HSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSLLRNLDGHTSRVT-SLDFSP 422
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
+ + I+ WD+ + DG + AS
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKS 461
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 54/232 (23%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
+A S + + S+S + ++++ T K +T +AF P D +A +D
Sbjct: 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQD 156
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
+++++++R + L GH + +AFSP L+SS +D + +W +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------- 209
Query: 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSA 1023
L HE+ + S ++SP
Sbjct: 210 ---------------------KCLGTLRGHENGV--------NSVAFSP----------- 229
Query: 1024 IYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLV 1074
DG L+ +G DG I V+D T + G + + + A S L
Sbjct: 230 ----DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (185), Expect = 4e-14
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 34/276 (12%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTL-NQGSNVMSMDFHPQQQTILLVGTNVGDISL 373
++ +G + + D T + TL V S+ F P ++ G++ G I L
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 374 WEVGSRERLAH--------------------------KPFKVWDISAASMPLQNALLNDA 407
W++ + + L ++WD+ ++S L+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ 467
SV + PDG +L S V L+ TG+L L + H G V+ ++F P+
Sbjct: 286 --SVLSVAFSPDGKLLASGSSDGTVRLWDLE-TGKLLSSLTLKGHEGPVSSLSF-SPDGS 341
Query: 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
L + DD I++WD+ G+ T EGH V SV + ST DG ++ W
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWD 398
Query: 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563
+ D + T + +S DG L S +
Sbjct: 399 LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-12
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 34 FFFNMKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAK 92
F K + + G+WDE +L R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (164), Expect = 2e-11
Identities = 49/262 (18%), Positives = 111/262 (42%), Gaps = 16/262 (6%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLFNMMTFKVMTM 876
+LW +G ++ + P +A S + ++++ G + L+++ T K++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS----SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPT 935
+S + +F P D +++A G D +++++++R + L GH + + +AFSP
Sbjct: 237 TLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD 295
Query: 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995
L S +D + +W ++ + L S ++ G + + F D + L+
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP------VSSLSFSPDGSLLVSGGSD 349
Query: 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055
++ L + + + S +S DG +V +G DG + ++D T +
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNL 408
Query: 1056 -GPSAYIPTYAVSNTAHPLVIA 1076
G ++ + + S L
Sbjct: 409 DGHTSRVTSLDFSPDGKSLASG 430
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.8 bits (138), Expect = 2e-08
Identities = 87/396 (21%), Positives = 156/396 (39%), Gaps = 51/396 (12%)
Query: 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS 652
+ F L+ + IK WD+DN L +++ S + +G+ + + +S
Sbjct: 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130
Query: 653 --DNGIKILANSDGVRLLRMLEG--------------------RAMDKNRCPSEPISSKP 690
D +K+ S +L+R LEG ++D + + KP
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190
Query: 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI------DGSRLVDVKPRVAEDV 744
L+ A S A +P D G S SS GTI G L ++ V
Sbjct: 191 LSTLAGHTDPVSSLAFSP-----DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804
S ++ S +RL D ++S ++R + +S S+L++A + KL
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLL----- 299
Query: 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GK 862
SG + V LW T K E + ++ S + S ++S G
Sbjct: 300 ---ASGSSDGTVR--LWD--LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922
+ L+++ T K + ++F P D +++ G D +V+++++ + L G
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958
H +R+T L FSP +L S +D + +W + K
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
LKGH +T +AFSP L + D + +W ++ E L++ G P+
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPV---RD 56
Query: 980 VQFHNDQTHLLVVHE-SQISVYD-SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037
V D T+L I ++D EC R+ + + +SS +S DG ++ +
Sbjct: 57 VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT---SYVSSVAFSPDGRILSSSSR 113
Query: 1038 DGAIGVFDAET 1048
D I V+D ET
Sbjct: 114 DKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 44/185 (23%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW---LYDYLGSRVDYDAPGNWCTMMA 548
T +GH V V + + + + DG IK W + L + + P A
Sbjct: 4 TLKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV---A 58
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
SADGT L S + K + W+ G RT +G V F ++
Sbjct: 59 ASADGTYLASGSSDKT----IRLWDLETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSR 113
Query: 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL 668
+ IK WD++ LTT+ S + F+ +G+ +A ++ D IK+ + + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVASSSQDGTIKL-WDLRTGKCV 170
Query: 669 RMLEG 673
L G
Sbjct: 171 ATLTG 175
|
Length = 289 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 4e-06
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
EL LIL++L ++ET L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 1e-05
Identities = 49/242 (20%), Positives = 91/242 (37%), Gaps = 20/242 (8%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946
+ ++ + DS V + ++ L+GH++ IT +AFSP L+S +D
Sbjct: 32 SLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE- 1005
+ +W +D + I++ G V + + + + LL +V L
Sbjct: 88 TIKLWDLDN----GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143
Query: 1006 CSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY 1064
+ + ++S +S DG LL DG I ++D T + +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL--------- 194
Query: 1065 AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPSNSSNP 1124
+T +A P IA G SDG + + + S +L + + S S +
Sbjct: 195 -AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG 253
Query: 1125 PL 1126
L
Sbjct: 254 SL 255
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
E+ LKGH +T +AFSP L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ L + + DD ++VWD
Sbjct: 6 TLKGHTGPVTSVAF-SPDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ LKGH +T +AFSP N L S D + +W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V +AF P+ + + + DD IK+WD
Sbjct: 7 TLKGHTGPVTSVAF-SPDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
G+ T +GH PV SV + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDG--NLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQL 130
+ FE+R Q+++E + +A+E ++L F FNE+ KEI +L+ L F
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1134 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.73 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.53 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.45 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.45 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.44 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.42 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.38 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.36 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.33 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.3 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.29 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.27 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.26 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.25 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.15 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.14 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.13 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.11 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.1 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.04 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.9 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.83 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.8 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.79 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.75 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.74 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.72 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.72 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.71 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.7 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.69 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.69 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.64 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.63 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.6 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.6 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.58 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.55 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.53 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.52 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.49 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.44 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.4 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.4 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.4 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.38 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.34 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.33 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.33 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.31 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.26 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.26 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.17 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.11 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.08 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.02 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.02 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.0 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.99 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.97 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.95 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.89 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.89 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.87 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.84 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.78 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.76 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.68 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.64 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.62 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.59 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.56 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.51 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.47 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.47 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.43 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.39 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.33 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.28 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.26 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.19 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.17 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 97.12 | |
| PRK10115 | 686 | protease 2; Provisional | 97.03 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.02 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.0 | |
| PRK10115 | 686 | protease 2; Provisional | 96.9 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.88 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.85 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.84 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 96.79 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.74 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.73 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.69 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.66 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.64 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.64 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.62 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.62 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.61 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.6 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.57 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.52 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.43 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.38 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.38 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.35 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.29 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.25 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.2 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.19 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.14 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.09 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.06 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.9 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.81 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.65 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.65 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.51 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.38 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.37 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.33 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.28 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.26 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.22 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.96 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.84 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.74 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.66 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.62 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.5 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.16 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.01 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.93 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.5 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.15 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.64 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.57 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.47 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.32 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.23 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.19 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.83 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.64 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.48 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.24 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.15 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.97 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.95 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.82 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.79 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.56 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.46 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 90.25 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.05 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.99 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.86 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.78 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 89.77 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.63 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.47 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 89.35 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.27 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.78 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.55 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 88.39 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.08 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 87.75 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.52 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.28 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 87.17 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.13 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.04 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.01 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.94 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.72 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 86.7 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 86.65 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.16 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.84 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 85.7 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 85.07 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.83 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.48 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 84.09 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 83.55 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 83.53 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 83.49 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 83.25 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.21 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 82.51 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 81.81 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.55 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.53 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 81.46 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.0 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 80.56 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 80.51 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-69 Score=535.85 Aligned_cols=490 Identities=20% Similarity=0.313 Sum_probs=410.9
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHH
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKY 81 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 81 (1134)
+-|++||+.|+|+.+||.+|+.+||.|||+.++ .+.|.++|+.|+|+.++..+..+ .+++....+++.|++++|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999986 89999999999999999999876 34445567789999999999
Q ss_pred HHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCccccccC
Q 001160 82 LEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKL 161 (1134)
Q Consensus 82 lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~ 161 (1134)
||++..|....|+.+||+.+.++ -++.+++++|+.-+..++.....+...-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 99999999999999999999999 678999999998766554432222222223577899999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001160 162 SFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPFQ 241 (1134)
Q Consensus 162 ~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~f~ 241 (1134)
+|++||++||+||++||+++|+|||+ .+..|||.||.|++ .++ |. ++.+++.+|+
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~------------~qi----p~-qt~qil~~ht--- 224 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR------------LQI----PS-QTWQILQDHT--- 224 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc------------ccC----Cc-hhhhhHhhCC---
Confidence 99999999999999999999999995 55589999999999 333 33 4444444443
Q ss_pred CCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeEee
Q 001160 242 PVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFA 321 (1134)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 321 (1134)
T Consensus 225 -------------------------------------------------------------------------------- 224 (519)
T KOG0293|consen 225 -------------------------------------------------------------------------------- 224 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccc
Q 001160 322 GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQN 401 (1134)
Q Consensus 322 ~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1134)
++||.+.||++|+ +||+++.|.+..||++.....+. + .
T Consensus 225 -------------------------dEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~k-----l-----------~ 262 (519)
T KOG0293|consen 225 -------------------------DEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFK-----L-----------K 262 (519)
T ss_pred -------------------------CcEEEEEEcCCCe-eEeeccCCceEEEEEEecCccee-----e-----------e
Confidence 4899999999998 79999999999999987544321 1 1
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.+|..+|..+.||||.++|++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|+++..
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIM 338 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEE
Confidence 1277999999999999999999999999999999999998776432 24668899999999999 7999999999999
Q ss_pred EECCCCeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 482 WDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
||+ +|..+..+++-. ..|.++++++ ||.++++.+.|..|++++.++...+. +.....+|++++.|.|++++++.-
T Consensus 339 wdl-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 339 WDL-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred ecC-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEc
Confidence 995 566666666643 5689999876 45999999999999999988765553 334567899999999999998876
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcc--eEEEEEe-CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRS--LGVVQFD-TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
. +..+++||++..+.++.+.||..+. |.++ |. .+..++++|++|+.|+||+..+++++..+.+|. ..|++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC-Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNc 487 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSC-FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNC 487 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEec-cCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeE
Confidence 4 6679999999999999999997643 3433 44 344789999999999999999999999999885 48999
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEECCC
Q 001160 638 LRFNK-EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 638 ~~~s~-d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
++|+| +..++|++++||+||||....
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999 667899999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-63 Score=476.02 Aligned_cols=488 Identities=19% Similarity=0.297 Sum_probs=409.4
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHH
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQK 80 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~ 80 (1134)
+.||||||.|||+|+.++++.++||+|++++++ ++-|.++|.+|+||.++..+++| +++.+-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 468999999999999999999999999999998 88999999999999999999988 66777889999999
Q ss_pred HHHHHhccCHHHHHHHHHhc--cccccccCHHHHHHHHHhhcccCccchhhhccCCCchhHHHHHHHHHHhhcccCcccc
Q 001160 81 YLEALDRQDRAKAVEILVKD--LKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFR 158 (1134)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1134)
.|||+|.++...|..+||+. +.-++..++++|-+|+.||..+.++..|.+.+ .+.++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999985 66666779999999999999999999987654 24566667777767655543
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 001160 159 DKLSFPSFKSSRLRTLINQSLNWQHQLCKNPRPNPDIK-TLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAH 237 (1134)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~-~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 237 (1134)
+||+||..||+||++||+.+.+.+ |+.. +||...-..+
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K------------------------------- 193 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK------------------------------- 193 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-------------------------------
Confidence 899999999999999999999987 4432 5554222211
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcce
Q 001160 238 GPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDE 317 (1134)
Q Consensus 238 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1134)
+ .++|.+|......|+|++++.
T Consensus 194 -~-------------------~~Ee~~Pt~l~r~IKFg~KSh-------------------------------------- 215 (508)
T KOG0275|consen 194 -D-------------------QEEERYPTQLARSIKFGQKSH-------------------------------------- 215 (508)
T ss_pred -h-------------------hHhhhchHHhhhheecccccc--------------------------------------
Confidence 1 244455666566666666554
Q ss_pred eEeeCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccc
Q 001160 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397 (1134)
Q Consensus 318 v~~s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 397 (1134)
+.|..|||||+ +|++|+.||.|.+||+.+|+......+..
T Consensus 216 -------------------------------~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQA-------- 255 (508)
T KOG0275|consen 216 -------------------------------VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQA-------- 255 (508)
T ss_pred -------------------------------hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhh--------
Confidence 55889999998 78999999999999999998765322210
Q ss_pred cccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEe-cccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 398 ~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
...+.-+.++|.|+.||.|...||+|+.||.|++|.+.+|.+++ .|. +|...|+|+.|+.|+. .+++++.|
T Consensus 256 ---qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~S--qiLS~sfD 327 (508)
T KOG0275|consen 256 ---QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDNS--QILSASFD 327 (508)
T ss_pred ---hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCcc--hhhccccc
Confidence 11244588999999999999999999999999999999999988 444 8999999999999999 69999999
Q ss_pred CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--CCcEEEEEECCCC-
Q 001160 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADG- 553 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~- 553 (1134)
.++++.-+.+|++++.|+||...|+...|.+ +|..+++++.||+|++|+..+.++..++... ...|.++..-|.+
T Consensus 328 ~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 328 QTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred ceEEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 9999999999999999999999999999966 5599999999999999999999998877654 4478888777754
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc--CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
..+++|. ..+++++.++. |+.++++.... ++..-+++.+|.|.++++.++|+.++.|.+.+|++..++..|..
T Consensus 406 eh~iVCN----rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 406 EHFIVCN----RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred ceEEEEc----CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 5667774 36779999875 78888886542 33566778999999999999999999999999999999987754
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 632 LPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+..++-+|..+.+|+-+.||.+++|.
T Consensus 481 --dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 --DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred --cccccccCcccchhhhhcccchhhhcC
Confidence 678899999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-58 Score=489.42 Aligned_cols=576 Identities=19% Similarity=0.247 Sum_probs=478.4
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
++||++|+ +|++.. ...|.+-|+.++... .. .-......+++++.+||+.+|++++...
T Consensus 25 ~~~s~nG~-~L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 566654 346888999998763 21 1234567899999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC
Q 001160 431 IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1134)
.+++|++.+++.++ .+.. |.+||.-++|+|.+. .+++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998777 5555 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK 588 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 588 (1134)
....|++|..|+++++||+..... ...+..|.+.|++++|++|+..+++++. |..+.+||+.+.+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 777899999999999999996554 7788899999999999999999999986 7789999998877777777655
Q ss_pred cceEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 589 RSLGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 589 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+-++.+-++ +.+++++|.+|.+++||.+++++......... ..+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEccc
Confidence 4677777777 67999999999999999999988776654432 2366666666666677788899999999988
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
. ++.+.+.|....+.. +.++| ..+....++..
T Consensus 313 l-~i~k~ivG~ndEI~D------------m~~lG-----------------------------------~e~~~laVATN 344 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILD------------MKFLG-----------------------------------PEESHLAVATN 344 (775)
T ss_pred c-EEehhhcCCchhhee------------eeecC-----------------------------------CccceEEEEeC
Confidence 8 777777776655432 12221 11233445555
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
...+++++..+..+. .+ .+|...|.++....+|-+|++++.|.++++|.++.+.
T Consensus 345 s~~lr~y~~~~~~c~------ii--~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~------------------ 398 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ------II--PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNC------------------ 398 (775)
T ss_pred CCceEEEecCCCceE------EE--eCchhheeeeeecccCcEEEEecCCceEEEEEecCCc------------------
Confidence 699999988764443 22 3599999999988888999999999999999873211
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCC-CEEEEEe-CCeEEEEECCCCeE---------EEEecCCCCceEEEEEcCC
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKND-SYVMSAS-GGKVSLFNMMTFKV---------MTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg-~~la~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~ 892 (1134)
+......... .| ...|.+++++..+ .++++++ |.++++|++...+. ..+...|...|+|++++|
T Consensus 399 -~~~~~~a~~~--gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~- 473 (775)
T KOG0319|consen 399 -SKSLCVAQAN--GH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP- 473 (775)
T ss_pred -chhhhhhhhc--cc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-
Confidence 1111111122 38 9999999998765 4788888 99999999976221 113346999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC
Q 001160 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~ 972 (1134)
+.+++|||+.|++.+||+++......+|.||...|+++.|+|..+.|+|+|.|++|+||.+++.. +++.+.||.
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~- 547 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT- 547 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc-
Confidence 89999999999999999999999999999999999999999999999999999999999999988 778889998
Q ss_pred CCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 973 PLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 973 ~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
..|..+.|-.+|+.|++ ++||-+++|++ +..|...+ ++|...|++++.++++.+++||+.||.|.+|.=.|.
T Consensus 548 --~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl---D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 548 --SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL---DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred --ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh---hhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 58999999999999999 68999999999 77787765 677999999999999999999999999999976553
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-54 Score=459.38 Aligned_cols=570 Identities=12% Similarity=0.210 Sum_probs=469.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
++|+++|+.|++...|. |.+-|+.++...... .-..-...+++++..||++ +|++++....+++|++.+|+.++.+
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv~t~~~~l~s-~~~ed~d~ita~~l~~d~~--~L~~a~rs~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDVATGSIALPS-GSNEDEDEITALALTPDEE--VLVTASRSQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEccCCceeccc-CCccchhhhheeeecCCcc--EEEEeeccceEEEEEcccchHhHhH
Confidence 89999999999997765 888899988753111 1223556799999999998 8999999999999999999999999
Q ss_pred cC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCE--EEEEeeCCCCCCcEE
Q 001160 494 EG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR--LFSCGTSKEGESHLV 570 (1134)
Q Consensus 494 ~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~~~~~~~~i~ 570 (1134)
+. |.+||.-++|+|.+ ..+++|+.|+.+++||+....+...+.+|++.|.++.|.|+-++ |+++. .|++++
T Consensus 101 Ka~He~Pvi~ma~~~~g--~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~----~D~~v~ 174 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG--TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA----TDGTVR 174 (775)
T ss_pred hhccCCCeEEEEEcCCC--ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC----CCceEE
Confidence 98 99999999998876 89999999999999999999999999999999999999998765 44554 488999
Q ss_pred EEeCCCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC-----C
Q 001160 571 EWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-----G 644 (1134)
Q Consensus 571 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~ 644 (1134)
+||+.+... +..+..|.. .|+++.|++|+..++++|.|..+.+||+...+...+++... .+-++.+-++ |
T Consensus 175 vwnl~~~~tcl~~~~~H~S-~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKS-AVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE---SLESVVRLREELGGKG 250 (775)
T ss_pred EEEcccCchHHHHHHhhhh-heeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhh---heeeEEEechhcCCcc
Confidence 999996654 778888887 89999999999999999999999999998888777776543 3566677676 6
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCc
Q 001160 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.++++++.+|.+++||.+++ ...........+-
T Consensus 251 ~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~e---------------------------------------------- 283 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESG-KCVYKQRQSDSEE---------------------------------------------- 283 (775)
T ss_pred eEEEEecCCceEEEEecccc-hhhhhhccCCchh----------------------------------------------
Confidence 79999999999999999988 4443332221000
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEe-cCCcceEEeeccCeeEEeeccc
Q 001160 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
...........+.++...+.++.++|.++......+ .+..+.|..+.|- |+.+.|+++++.+.+++|++.+
T Consensus 284 -~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 284 -IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred -hhcceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhheeeeecCCccceEEEEeCCCceEEEecCC
Confidence 011122334566777788899999987764333222 3467888988875 6778899999999999997643
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCC----eEEEEec
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----KVMTMFM 878 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----~~~~~~~ 878 (1134)
.. +. .+++ | ...|.++....+|-+||+|+ |.++++|.++.+ -++....
T Consensus 356 ~~----------------------c~--ii~G--H-~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 356 SY----------------------CQ--IIPG--H-TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred Cc----------------------eE--EEeC--c-hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 11 11 2455 8 99999999888889999999 999999988543 2455677
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE-----E----EEecCcccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV-----K----TKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~-----~----~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
+|.+.|.+++++.....++++++.|+++++|++...+. . .+-..|...|.+++++|+.+++||||.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 89999999999986678999999999999999976221 1 12357999999999999999999999999999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEcc
Q 001160 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSC 1027 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~ 1027 (1134)
||+++... ......||. .+|.++.|+|..+.+++ ++|++|++|.+ +..|++++ .||...|..+.|-.
T Consensus 489 iW~le~~~-----l~~vLsGH~---RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~---eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 489 IWDLEQLR-----LLGVLSGHT---RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF---EGHTSAVLRASFIR 557 (775)
T ss_pred eecccCce-----EEEEeeCCc---cceEEEEeccccceeEeccCCceEEEEEeccceeeeee---cCccceeEeeeeee
Confidence 99999655 677788888 58999999999999999 68999999999 88998886 56799999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1028 DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1028 dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+|+.|++++.||-|++|++.++++++++..|. ..+-+++-+| +..+++||+.||.|.+|.=.+
T Consensus 558 ~~~qliS~~adGliKlWnikt~eC~~tlD~H~----------DrvWaL~~~~-~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTNECEMTLDAHN----------DRVWALSVSP-LLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CCcEEEeccCCCcEEEEeccchhhhhhhhhcc----------ceeEEEeecC-ccceeEecCCCeEEEEeecCc
Confidence 99999999999999999999999999998663 5556777777 567999999999999996444
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=414.23 Aligned_cols=569 Identities=14% Similarity=0.208 Sum_probs=440.0
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
-+.-.|.|+.++.+. ...|.+-++++..... ++.+|..+++-..|||.|-|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 345567788787765 4578888888765433 3778999999999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc--CCC--cEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~--~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.|+|||....+.+ ...+++...++|..++|+.|+++ |+..+ .++ .+.+|| +|..+..+.||...|+++.|-
T Consensus 82 ~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~K 156 (603)
T KOG0318|consen 82 KVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFK 156 (603)
T ss_pred cEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec--CCCccceeeccceeEeeeecc
Confidence 9999998764433 23367778899999999999995 44443 333 455565 888899999999999999999
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec--
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-- 584 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 584 (1134)
|..+ -++++|++|++|.+|+-.-.+-...+..|..-|.++.|+|||.++++++. |+.+.+||-.+|+.+..+.
T Consensus 157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCC
Confidence 8876 68999999999999976555555667778889999999999999999985 8889999999999999998
Q ss_pred -CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC-CCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 585 -GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 585 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+-+|+|.+++..
T Consensus 232 ~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 232 DAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPS 308 (603)
T ss_pred CCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEeccc
Confidence 6666 8999999999999999999999999999999999998765431 112234454 5689999999999999988
Q ss_pred CchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccc
Q 001160 663 DGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAE 742 (1134)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1134)
.. ...+.+.+
T Consensus 309 d~-~~~~~i~G--------------------------------------------------------------------- 318 (603)
T KOG0318|consen 309 DP-SVLKVISG--------------------------------------------------------------------- 318 (603)
T ss_pred CC-Chhheecc---------------------------------------------------------------------
Confidence 77 24443333
Q ss_pred ccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccccc
Q 001160 743 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~ 822 (1134)
|...|+++..++|+++|++++.||.|.-|+...
T Consensus 319 ----------------------------HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~------------------- 351 (603)
T KOG0318|consen 319 ----------------------------HNKSITALTVSPDGKTIYSGSYDGHINSWDSGS------------------- 351 (603)
T ss_pred ----------------------------cccceeEEEEcCCCCEEEeeccCceEEEEecCC-------------------
Confidence 667899999999999999999999999997643
Q ss_pred CCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEE
Q 001160 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIG 900 (1134)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg 900 (1134)
|..-. +.+..| ...|.+++.+..+.++-++-|.++++.++........ ++-.. .-.+++..+ ++.+++.+
T Consensus 352 ---g~~~~--~~g~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~ 423 (603)
T KOG0318|consen 352 ---GTSDR--LAGKGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVA 423 (603)
T ss_pred ---ccccc--cccccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEE
Confidence 22222 333448 9999999998888877777799999999865433222 12122 233888888 77677666
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001160 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
+.++.+.+=|... +.... -.-...+++++|++..+|.|+.|+.|+||.+..++......... |. .+++.+
T Consensus 424 ~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~v 493 (603)
T KOG0318|consen 424 CISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDV 493 (603)
T ss_pred ecCcEEEEecCCc---ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEE
Confidence 6665544433322 22222 22346789999999999999999999999999877433322222 22 578999
Q ss_pred EECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcc
Q 001160 981 QFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059 (1134)
Q Consensus 981 ~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1059 (1134)
+||||+.+||++ ..+.|.+||+..+.... ..-.-|...|.+++|||+.++||||+.|.+|.||+++.....-.+..
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn-- 570 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN-- 570 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceec-ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecc--
Confidence 999999999997 57899999995554422 22234689999999999999999999999999999998766544332
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+|. ..+..+.|. |...+++.+.|-+|++|.+.
T Consensus 571 -----AH~--~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 571 -----AHL--GGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -----ccc--cCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 223 235567776 56899999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=426.82 Aligned_cols=568 Identities=16% Similarity=0.231 Sum_probs=441.6
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.+...|++++.||+|. +|++-...|...+-++.....++... -+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECCCCcE
Confidence 34788999999999997 66667778888888887766665422 3568999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCc-----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee--eEEecC
Q 001160 423 LGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK--QYTFEG 495 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~--~~~~~~ 495 (1134)
+|+|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|++...+. .+.+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 999854 5699999865432 233446678999999999999999 899999999999999987665 567889
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-----------------------CCc-----------eeEecCCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----------------------LGS-----------RVDYDAPG 541 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~-----------~~~~~~~~ 541 (1134)
|.+.|-++-|..+. ..+++.+.||.+.+|.... ++. +.-+....
T Consensus 188 Hkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999999886654 7899999999999997761 111 01122233
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1134)
..+++.+|++..+.|+++.. .|...+|.+....+++.+..... .|..++|+..|.+++.|+ .-|.+.+|+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 68999999999999999875 66789999999999999988766 899999999999999977 4589999999887
Q ss_pred eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCc
Q 001160 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
.-+...++| ...+.+++++|||+++|+|++||.|+|||...+ -++.++.
T Consensus 341 sYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTFt---------------------------- 389 (893)
T KOG0291|consen 341 SYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTFT---------------------------- 389 (893)
T ss_pred ceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEec----------------------------
Confidence 766666655 568999999999999999999999999999877 2222222
Q ss_pred ccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEE
Q 001160 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIY 780 (1134)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 780 (1134)
+ |...|+.+.|
T Consensus 390 -------------------------------------------------------------------e--Hts~Vt~v~f 400 (893)
T KOG0291|consen 390 -------------------------------------------------------------------E--HTSGVTAVQF 400 (893)
T ss_pred -------------------------------------------------------------------c--CCCceEEEEE
Confidence 2 7788999999
Q ss_pred ecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001160 781 TNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 781 s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
+..|+.+++.+-||+|+.||+.. ....+..... - .....|++..|.|..+..|+
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkR----------------------YrNfRTft~P--~-p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKR----------------------YRNFRTFTSP--E-PIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecc----------------------cceeeeecCC--C-ceeeeEEEEcCCCCEEEeecc
Confidence 99999999999999999998742 1111111110 1 55678899999999999998
Q ss_pred C-CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCC
Q 001160 860 G-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 860 d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
| -.|.||++++|+++-.+.||.++|.+++|+| .+..||+|++|.+|++||+-.. ..+.++. +...+.+++|+|||+
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK 533 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC
Confidence 5 5699999999999999999999999999999 8999999999999999998754 3345555 677899999999999
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCC
Q 001160 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP 1017 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~ 1017 (1134)
.||++..||.|.+||.+.+... ....+.. =..++.+ ....+ ........
T Consensus 534 elaVaTldgqItf~d~~~~~q~-----~~Idgrk-----------------D~~~gR~-------~~D~~--ta~~sa~~ 582 (893)
T KOG0291|consen 534 ELAVATLDGQITFFDIKEAVQV-----GSIDGRK-----------------DLSGGRK-------ETDRI--TAENSAKG 582 (893)
T ss_pred eEEEEEecceEEEEEhhhceee-----ccccchh-----------------hcccccc-------cccee--ehhhcccC
Confidence 9999999999999999876532 1222211 0110000 00000 01111225
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccc---------------cc-------------------
Q 001160 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI---------------PT------------------- 1063 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~---------------~~------------------- 1063 (1134)
...+.+++|+||.++++|+....|++|++.++.++.+++..... +.
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~ 662 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDI 662 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccc
Confidence 78999999999999999999999999999998888766632111 00
Q ss_pred ------------cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1064 ------------YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1064 ------------~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.-..-.+.+..+.|+| .|+-++.++..| |.||.+.+
T Consensus 663 ~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 663 ALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 0001135677999999 678899898888 67787754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=413.08 Aligned_cols=532 Identities=16% Similarity=0.222 Sum_probs=422.1
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..|..+++-..|||.|. ++|+|...|+|+|||....+.+...+ +..-.++|..++|++|+++
T Consensus 56 tEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ds~R 117 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDFDSKR 117 (603)
T ss_pred ccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCCCCcE
Confidence 34889999999999996 89999999999999988755443323 2345678999999999999
Q ss_pred EEEEeC--C--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 423 LGVAFS--K--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 423 las~~~--d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
|++.+. + |.+.+|| +|..+. ++.||...|++++|-|.... +++||++|++|.+|+=.--+.-.+++.|..
T Consensus 118 I~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hsk 191 (603)
T KOG0318|consen 118 IAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSK 191 (603)
T ss_pred EEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccccc
Confidence 988754 3 3455555 555444 78899999999999987665 899999999999998555555667888999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.|.++.|+|+ |.++++++.||++.+||-.+++....+. .|.+.|++++|+||+..+++++. |.++++||+.
T Consensus 192 FV~~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs 265 (603)
T KOG0318|consen 192 FVNCVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVS 265 (603)
T ss_pred ceeeEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEee
Confidence 9999999886 5999999999999999999999988887 88999999999999999999986 7789999999
Q ss_pred CCeeEEEecCccC---cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 576 EGAIKRTYSGFRK---RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 576 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+.++++++..... ..+.|+ |. +..|++.+.+|.|.+++...+..+..+.+|. ..|+++..++|+++|++|+.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred ccceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeecc
Confidence 9999999876532 134433 54 5689999999999999999999888888774 58999999999999999999
Q ss_pred CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccc
Q 001160 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1134)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1134)
||.|.-|+..++......-++|...+.. +..
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~-------------------------------------------------~~~ 371 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKG-------------------------------------------------MAA 371 (603)
T ss_pred CceEEEEecCCccccccccccccceEEE-------------------------------------------------Eee
Confidence 9999999998883322222444433221 122
Q ss_pred ccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCc
Q 001160 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
...+.++.++.|+++++.++.......... +.+ .....+++..+++..++....++.+.+-+..
T Consensus 372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~---------- 435 (603)
T KOG0318|consen 372 SESGELFTIGWDDTLRVISLKDNGYTKSEV-VKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQT---------- 435 (603)
T ss_pred cCCCcEEEEecCCeEEEEecccCcccccce-eec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCC----------
Confidence 234677888999999999886543332211 111 2233488899998777666666554443221
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeE--EEEecCCCCceEEEEE
Q 001160 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAF 889 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~ 889 (1134)
.+... +. .....++|++|++..+|+|+ |+.|+||.+..... ...+..|.++|++++|
T Consensus 436 --------------~~~~~--~~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 436 --------------KVSSI--PI----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred --------------cceee--cc----ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 01111 11 55678999999999999999 99999999987553 3345679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|| |+.+||+|...+.+.+||+.+.+.... +.-|..+|.+|+|+|+..++|||+-|..|.||+++..... +....
T Consensus 496 Sp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~----i~ikn 570 (603)
T KOG0318|consen 496 SP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH----IIIKN 570 (603)
T ss_pred CC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh----eEecc
Confidence 99 999999999999999999999876433 4459999999999999999999999999999999875532 44455
Q ss_pred CCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
.|. ..|+.+.|-.+...+-++.|..|++|++
T Consensus 571 AH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 571 AHL---GGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccc---cCceeEEEecCceEEeccCcceeEEecc
Confidence 666 4599999998888777799999999986
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=417.64 Aligned_cols=584 Identities=13% Similarity=0.213 Sum_probs=444.8
Q ss_pred CCcceeEeeCCCCCCccccCcc-------ccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccc
Q 001160 313 GQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHK 385 (1134)
Q Consensus 313 ~~~~~v~~s~~g~~~~~~~~~~-------~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~ 385 (1134)
.++.+++.||+|..+....-.+ ....+++.+.-+.+|.|+.|||||+ ++|.|. .+-+.||.......-...
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~~-gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVGC-GNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEEe-cceeEEEecCcchhcccC
Confidence 4788899999998765544332 2344566666789999999999998 566554 578999997654331111
Q ss_pred cceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC
Q 001160 386 PFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN 465 (1134)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~ 465 (1134)
.| .....+.+|-+.|.++.||.|.++|++|+.|-++++|+++..+.+. ...+.+|.+.|-++-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~-~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF-TYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccc-eEeccCCCcceEEEEeccCc
Confidence 22 1222367899999999999999999999999999999999877643 34788999999999999998
Q ss_pred CcEEEEEEcCCCcEEEEECCC-----------------------Cee-----------eEEecCCCCCeEEEEeeccCCc
Q 001160 466 KQLCIVTCGDDKMIKVWDVVA-----------------------GRK-----------QYTFEGHEAPVYSVCPHHKESI 511 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~i~~~~~~~~ 511 (1134)
. -++|-+.||.+.+|.... ++. .+-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 799999999999998661 111 01122234789999999876
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
..|++|-..|...+|.+.....+..+.....+|..++|+..|.+++.++. +-|++.+|+..+...+...++|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 79999999999999999999999999988899999999999999999884 578999999999999999999988 89
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
++++++|||+++++|++||.|++||..++-++.++..| ...|+.+.|+..|+.+++.+-||+||.||+... +..+++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 99999999999999999999999999999999999877 458999999999999999999999999999766 434333
Q ss_pred cCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceec
Q 001160 672 EGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751 (1134)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~ 751 (1134)
..+
T Consensus 431 t~P----------------------------------------------------------------------------- 433 (893)
T KOG0291|consen 431 TSP----------------------------------------------------------------------------- 433 (893)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 221
Q ss_pred cCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc-CeeEEeecccccCCCCCCcccccCcccccCCCCCccc
Q 001160 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT 830 (1134)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 830 (1134)
......+++..|.|..+++|+.| -.|.+| ...+|+++.
T Consensus 434 -------------------~p~QfscvavD~sGelV~AG~~d~F~IfvW----------------------S~qTGqllD 472 (893)
T KOG0291|consen 434 -------------------EPIQFSCVAVDPSGELVCAGAQDSFEIFVW----------------------SVQTGQLLD 472 (893)
T ss_pred -------------------CceeeeEEEEcCCCCEEEeeccceEEEEEE----------------------EeecCeeee
Confidence 11234688899999988888877 345555 456666665
Q ss_pred cccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001160 831 NDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 831 ~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
. +.| | +++|.+++|+|+|..||+++ |.+|++||+-... .+.++. +...+..++|+| +|+-||+++-||.|.+
T Consensus 473 i-LsG--H-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf 546 (893)
T KOG0291|consen 473 I-LSG--H-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITF 546 (893)
T ss_pred h-hcC--C-CCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEE
Confidence 3 555 8 99999999999999999999 9999999986543 344444 778899999999 9999999999999999
Q ss_pred EEcCCceEEEEec--------------------CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 909 YNVRVDEVKTKLK--------------------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 909 wd~~~~~~~~~l~--------------------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
||+..+..+..+. ......+.+++|+||..+++||..+.|++|++.++-.++...+..-.
T Consensus 547 ~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~ 626 (893)
T KOG0291|consen 547 FDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNR 626 (893)
T ss_pred EEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence 9988765543322 12346889999999999999999999999999998766544433221
Q ss_pred CCCCCCcCceEEEECCCCcEEEEEE-----CCeEEE-------EeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLVVH-----ESQISV-------YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~~-----d~~v~v-------wd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
.-.....-...=.+.+-|.+-.+-. ++.|-+ +|+..+ ...+ .-.|+++.|||.|+-+|.++
T Consensus 627 sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssR---r~rp----eIrv~sv~fsPtgraFAaat 699 (893)
T KOG0291|consen 627 SLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSR---RFRP----EIRVTSVQFSPTGRAFAAAT 699 (893)
T ss_pred chhHHHHHhccccccccCCccccccccccccccccccCCccccCCcccc---ccCc----eEEEEEEEECCCcCeeeeec
Confidence 1110000111122333333222210 111111 111111 0000 33688999999999999998
Q ss_pred cCCcEEEEeCCCcceee
Q 001160 1037 CDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 1037 ~dg~I~vwd~~~~~~~~ 1053 (1134)
..| |.||.+++.-+..
T Consensus 700 TEG-l~IYsld~~~~FD 715 (893)
T KOG0291|consen 700 TEG-LLIYSLDTTILFD 715 (893)
T ss_pred ccc-eEEEecCCceEEc
Confidence 887 7888887754443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=419.78 Aligned_cols=574 Identities=14% Similarity=0.229 Sum_probs=441.8
Q ss_pred cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 001160 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLY 435 (1134)
Q Consensus 356 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iw 435 (1134)
..|++ ++ ++....|.+||+++|+..... +...-...|+|+.-+||.-+||+|..||.|+||
T Consensus 32 ~~Gr~-va-~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRA-VA-VSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcE-EE-EeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 45774 33 333568999999999544320 011234689999999999999999999999999
Q ss_pred EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEE
Q 001160 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 436 d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1134)
+..++.... .+.||...|+++.|...|. .|++||.|+.|.+||+-...-+..+.||...|+..-|.... .+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~--~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGD--SFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCC--eEEE
Confidence 999875443 8899999999999999999 89999999999999999888899999999999999887643 8999
Q ss_pred EEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-------e-----eEEEe
Q 001160 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-------A-----IKRTY 583 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~ 583 (1134)
+.+.|+.|++||+++..+..+...|.+.++++++.+ +.+++++. ++.+.+|++... . ...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777764 667999998210 0 11112
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE--------eC------------------------CCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV--------DA------------------------DGG 631 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~------------------------~~~ 631 (1134)
.....+..-.+...++++++++-+.|..+.++.+.+.+.+... .. -..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1112223334666778889999999999999988653311000 00 000
Q ss_pred CCCcceEEEccCCC---EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCC
Q 001160 632 LPASPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1134)
...+.++.|.|.+. .|+. -.++++..|.++.. ....
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~~--------------------------------------- 358 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENS-GKTS--------------------------------------- 358 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccC-CCCC---------------------------------------
Confidence 12345566655432 2222 44556666655431 0000
Q ss_pred CCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceE
Q 001160 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLL 788 (1134)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 788 (1134)
| .......+.+ .+|...|.++++|.+...++
T Consensus 359 -p----------------------------------------------~~~~~~~i~~--~GHR~dVRsl~vS~d~~~~~ 389 (888)
T KOG0306|consen 359 -P----------------------------------------------EADRTSNIEI--GGHRSDVRSLCVSSDSILLA 389 (888)
T ss_pred -c----------------------------------------------cccccceeee--ccchhheeEEEeecCceeee
Confidence 0 0011112223 34889999999999987555
Q ss_pred EeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEE
Q 001160 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFN 867 (1134)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd 867 (1134)
++ ..+.+++|+. .+.++++... .+.+.+..|-|.++++++|. .|.+.+||
T Consensus 390 Sg-a~~SikiWn~----------------------~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 390 SG-AGESIKIWNR----------------------DTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred ec-CCCcEEEEEc----------------------cCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 54 4567888864 4444444321 45788999999999999999 89999999
Q ss_pred CCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-----ceEEEEec-------CcccceEEEEEecC
Q 001160 868 MMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-----DEVKTKLK-------GHQNRITGLAFSPT 935 (1134)
Q Consensus 868 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-----~~~~~~l~-------~h~~~i~~l~~s~d 935 (1134)
+.+...+.+.++|.+.|.+++.+| |++.+++|+.|.+|++||..- |...+.+. .-.+.|.|+.+|||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spd 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPD 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCC
Confidence 999999999999999999999999 999999999999999999641 21111121 13457999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCC
Q 001160 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPK 1013 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~ 1013 (1134)
|++||.+--|.+|+||-+++-+ +.-...||. .+|.++..|||++++++ +.|++|++|-+ =|.|.+.+
T Consensus 520 gk~LaVsLLdnTVkVyflDtlK-----FflsLYGHk---LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--- 588 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--- 588 (888)
T ss_pred CcEEEEEeccCeEEEEEeccee-----eeeeecccc---cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh---
Confidence 9999999999999999999966 677788998 68999999999999999 57999999999 67777766
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCc
Q 001160 1014 DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGA 1093 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~ 1093 (1134)
.+|...|.++.|.|+..++.+++.|+.|+-||..+.+.+..+..|. .-+.|++-+| +|.+++|+|.|.+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav~~-~G~~vvs~shD~s 657 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAVSP-NGSFVVSSSHDKS 657 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEEcC-CCCeEEeccCCce
Confidence 4568999999999999999999999999999999999999888663 3444777778 7899999999999
Q ss_pred EEEEecCCCc
Q 001160 1094 VHVVEPSDAE 1103 (1134)
Q Consensus 1094 v~vW~~~~~~ 1103 (1134)
|++|+..+..
T Consensus 658 IRlwE~tde~ 667 (888)
T KOG0306|consen 658 IRLWERTDEI 667 (888)
T ss_pred eEeeeccCcc
Confidence 9999987643
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=400.69 Aligned_cols=367 Identities=20% Similarity=0.306 Sum_probs=306.1
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .||+|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 67899999999999999999999999999999999976555 8889999999999999999 899999999999999
Q ss_pred CCCCeee-EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 484 VVAGRKQ-YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 484 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.++|+++ ..|.+|...|++++|.|-. ..|..++|++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~s-- 224 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSS-- 224 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceeccc--
Confidence 9998876 5799999999999997742 236667788776
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+|+.++|||+..+.++..+.+|.. +|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+-
T Consensus 225 --kDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 225 --KDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred --CCCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 477799999999999999999998 99999998765 899999999999999999999999998876 799999886
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
|- .|-+|..|.+=+-....+. .....++....
T Consensus 299 dy-~LRtgaf~~t~~~~~~~se-~~~~Al~rY~~---------------------------------------------- 330 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFSE-EQKKALERYEA---------------------------------------------- 330 (480)
T ss_pred hh-hhhccccccccccCCChHH-HHHHHHHHHHH----------------------------------------------
Confidence 53 2334443332211111111 11111211100
Q ss_pred CccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecc
Q 001160 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
..-..+..|++++.|.++.+|+-.
T Consensus 331 --------------------------------------------------------~~~~~~erlVSgsDd~tlflW~p~ 354 (480)
T KOG0271|consen 331 --------------------------------------------------------VLKDSGERLVSGSDDFTLFLWNPF 354 (480)
T ss_pred --------------------------------------------------------hhccCcceeEEecCCceEEEeccc
Confidence 001123568999999999999743
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC
Q 001160 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
. +.+++.. +.+ | ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-
T Consensus 355 ~---------------------~kkpi~r-mtg--H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 355 K---------------------SKKPITR-MTG--H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred c---------------------cccchhh-hhc--h-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 2 2222221 334 8 99999999999999999999 9999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
.+|..++|+. |.++|++|+.|.++++||+.+.++...|.||.+.|.++.|+|||..+++++.|..+++|.
T Consensus 410 ~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 AAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=416.33 Aligned_cols=498 Identities=14% Similarity=0.281 Sum_probs=402.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...+|+|+.-+||.. +||+|..||.|+||+..++..+.+ +.||...|+++.|...|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEe
Confidence 446899999999986 789999999999999998765543 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|+.|.+||+-....+. .+.||...|+..-|..+.+ ++++.+.|+.|++||+++..|..+.-.|.+.|++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 7889999999999998777 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCce------e-------EecCCC------------------------------
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSR------V-------DYDAPG------------------------------ 541 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~-------~~~~~~------------------------------ 541 (1134)
+.+ ..+++++.|+.+++|++...... . ......
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 976 68999999999999998210000 0 000001
Q ss_pred ----------------------------------------------CcEEEEEECCCCCE---EEEEeeCCCCCCcEEEE
Q 001160 542 ----------------------------------------------NWCTMMAYSADGTR---LFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 542 ----------------------------------------------~~v~~~~~s~~~~~---l~~~~~~~~~~~~i~~w 572 (1134)
..+.++.|.|.++. |+.- .++.+..|
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l-----~nNtv~~y 349 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLL-----ANNTVEWY 349 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEe-----ecCceEEE
Confidence 12333444443321 2221 13445556
Q ss_pred eCCC-Cee--------EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 573 NESE-GAI--------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 573 d~~~-~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
.+.. +.. ..++.+|.. .|++++++.+...+++| ..+.+.+|+..+.+++.++... .+.+..|-|.
T Consensus 350 sl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpg 423 (888)
T KOG0306|consen 350 SLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPG 423 (888)
T ss_pred EeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCC
Confidence 5543 111 134556666 89999999887666655 4678999999999999999754 6788999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
++++++|...|.+.+||+.+. .++.+++.
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~-~l~Eti~A-------------------------------------------------- 452 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASA-SLVETIRA-------------------------------------------------- 452 (888)
T ss_pred CceEEEeccCCceEEEEeehh-hhhhhhhc--------------------------------------------------
Confidence 999999999999999999877 44443332
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
|.+.|.+++.+||++.+++++.|.+|++|+...
T Consensus 453 -----------------------------------------------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 453 -----------------------------------------------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred -----------------------------------------------cccceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 677889999999999999999999999999864
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCC
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPP 882 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~ 882 (1134)
.... .|.... +-.+...+. +.- ...|.|+.+||||++||++- |.+++||-+++.+....+.||.-
T Consensus 486 ~~~~-~gt~~k-----~lsl~~~rt----Lel----~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 486 VVSV-PGTQKK-----VLSLKHTRT----LEL----EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred Eecc-Ccccce-----eeeeccceE----Eec----cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 3221 111000 000111111 222 77899999999999999998 99999999999999999999999
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1134)
+|.|+..|| |+++++||+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|+..++.|+|.|+.|+-||-+..+
T Consensus 552 PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe----- 625 (888)
T KOG0306|consen 552 PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE----- 625 (888)
T ss_pred ceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999998877
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCC
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK 1003 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~ 1003 (1134)
.+....+|. ..|.+++.+|+|.++++ ++|.+|++|..+
T Consensus 626 ~iq~L~~H~---~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 626 EIQKLDGHH---SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hheeeccch---heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 566777887 68999999999999999 679999999973
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=393.71 Aligned_cols=286 Identities=20% Similarity=0.352 Sum_probs=260.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|.|++|||+|+ .||+|+.|.++++||+.+.....+ .++|...|.|++|||||+.||
T Consensus 114 H~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred CCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchhh
Confidence 889999999999998 689999999999999999877654 789999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec-----CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..+.||..+
T Consensus 174 SG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 999999999999999987654 6789999999999975 455 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEEC-----------CCCC--------------
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYS-----------ADGT-------------- 554 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~-------------- 554 (1134)
|+|+.|-.. .++++++.|++|++|+...+.....+.+|.++|+.++.+ |.++
T Consensus 250 VTCvrwGG~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 250 VTCVRWGGE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred eEEEEEcCC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 999998433 699999999999999999988889999999999999877 2233
Q ss_pred -----------EEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 555 -----------RLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 555 -----------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.+++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||++++++++.|..|++||.++|+.
T Consensus 327 rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 4888874 78899999864 458889999988 899999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+.
T Consensus 402 lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 402 LASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred hhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 9999977 558999999999999999999999999999876
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=380.17 Aligned_cols=625 Identities=12% Similarity=0.183 Sum_probs=421.6
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe--C
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--S 428 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~--~ 428 (1134)
.++.+|-.. ++|. -....|.+||.+....- +++..|..+++|+|||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556554 3332 12347889998865433 23566888999999999999999984 6
Q ss_pred CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
...++||++.....+. +|..|...|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEEc
Confidence 7889999999887665 7889999999999999999 7776654 556778987654433222 235668888885
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEE-EEeeCCC--------CCCcEEEEeC
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLF-SCGTSKE--------GESHLVEWNE 574 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~--------~~~~i~~wd~ 574 (1134)
. +|.|+++.+ ...|++|.++...... .+.+...-...+.+ ..+++ .|+...- ..|.+.-+.
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~---n~f~avaCg~gicAestfait~qGhLvEFS- 247 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRF---NEFLAVACGVGICAESTFAITAQGHLVEFS- 247 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhcccccc---chhhhhhhcCcccccceEEEecccceeeec-
Confidence 4 568888876 6789999998765322 11111111111111 11111 1110000 022222222
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC----------------------CCC
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----------------------GGL 632 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~ 632 (1134)
+.+++..+..-.....+|++.+ .+++++|+.+|.|++|+..+-.-..+++.. ...
T Consensus 248 -sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 248 -SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred -hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 2222222221122245667666 568999999999999998775544443211 111
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhh--hhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCC
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLL--RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
+...++.|++....|.+...|..++|||+++-.+.- ..+-.|...++.+...+
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p------------------------- 379 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP------------------------- 379 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc-------------------------
Confidence 234578899989999999999999999998753321 22233433332211111
Q ss_pred CCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEe
Q 001160 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1134)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 790 (1134)
..+........|.+.++++++|++|++|+++........+.-.+ ......+.+.
T Consensus 380 ------------~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil-----s~~l~ki~y~--------- 433 (1080)
T KOG1408|consen 380 ------------CNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL-----SANLSKIPYE--------- 433 (1080)
T ss_pred ------------ccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc-----hhhhhcCccc---------
Confidence 01112223445667788999999999999986333322221110 0011111111
Q ss_pred eccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECC
Q 001160 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMM 869 (1134)
Q Consensus 791 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~ 869 (1134)
|+...+.. ....-++|...... .. . ...++++++||||++||+|+ .|.++||++.
T Consensus 434 --d~~~q~~~--------------d~~~~~fdka~~s~----~d---~-r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq 489 (1080)
T KOG1408|consen 434 --DSTQQIMH--------------DASAGIFDKALVST----CD---S-RFGFRALAVSPDGQHLASGDRGGNLRVYDLQ 489 (1080)
T ss_pred --cCchhhhh--------------hccCCcccccchhh----cC---c-ccceEEEEECCCcceecccCccCceEEEEeh
Confidence 11111100 00001111111111 11 2 67899999999999999999 7999999999
Q ss_pred CCeEEEEecCCCCceEEEEEcCC--CCcEEEEEeCCCcEEEEEcCC-ceEEEEecCcccceEEEEEecCC--CEEEEEcC
Q 001160 870 TFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRV-DEVKTKLKGHQNRITGLAFSPTL--NALVSSGA 944 (1134)
Q Consensus 870 ~~~~~~~~~~~~~~i~~l~~s~~--~~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h~~~i~~l~~s~d~--~~l~s~~~ 944 (1134)
..+.+..+..|..+|.|+.||-. ..++||+++.|..|.|||+.. ..++.++.+|+..|+++.|.-.| ..++++|.
T Consensus 490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 99999999999999999999852 357999999999999999874 46778899999999999998877 78999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEE
Q 001160 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISS 1022 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~ 1022 (1134)
|..|.+--.+.... . .+..-..+......+..++..|..+++++ +.|+.|+||++ .+++.+.+...++|.+....
T Consensus 570 DksimFr~~qk~~~--g-~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASS--G-RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred chhhheehhccccC--c-eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence 99775433321110 0 11111111122245788999999999999 78999999999 89999999999999999999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1023 AIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+...|.|-|||+.+.|+++.++|..+|+++.++.+| ...++.+.|.+ |.+.|++.+.||+|+||.+.-
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH----------sE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH----------SEAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCc----------chheeeeeecc-cchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999988754 46778999999 789999999999999999863
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=372.02 Aligned_cols=562 Identities=15% Similarity=0.216 Sum_probs=366.7
Q ss_pred cchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--------HHHHH--------------------------HH--hh
Q 001160 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--------MKHFE--------------------------DQ--VQ 46 (1134)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--------~~~~~--------------------------~~--i~ 46 (1134)
+..+++++++++||+..||+++.+.|.+|.++... ..-+| .+ +.
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~s~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLPSRPVNGMPAEPDYDREQFEALPPIGLPKENADDETPQGLSSSAVPVE 98 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcccccccCCCccccchhhhhhhccCCccccccccCCcccccccccCchhh
Confidence 35679999999999999999999999999875432 11111 00 11
Q ss_pred cccHHHH------HHHhcCccccc-------ccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHH
Q 001160 47 AGEWDEV------ERYLCGFTKVE-------DNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFK 113 (1134)
Q Consensus 47 ~g~w~~~------~~~l~~l~~~~-------~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~ 113 (1134)
.-.|... ++....|+.+. ..++. .++|+|+.|.||+|+.++....|..|+.+.--.++.++.+.+.
T Consensus 99 ~~~~~~~~~~~~ye~~y~~lk~~ve~Sldi~k~El~-~iLypifv~~yldl~~~~~~~~a~~Ffe~f~~d~~~~~~e~i~ 177 (707)
T KOG0263|consen 99 KALWSAEEIPDQYEHVYSELKTWVEDSLDIYKAELS-PILYPIFVHSYLDLVQKSAYETAKSFFERFRGDHKVYHSESIF 177 (707)
T ss_pred hccccccCCChhHhhhhhhcchhhhCcchhhhHHHH-HHHHHHHHHHHHHHHHcCcHHHHHHHHHHhccchhhhhhHHHH
Confidence 1112222 22222233221 12334 4999999999999999999999999999887777777888889
Q ss_pred HHHHhhcccCccchhhhccCCC----chhHHHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHHHHHhhCCCC
Q 001160 114 EITQLLTLDNFRQNEQLSKYGD----TKSARNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLNWQHQLCKNP 189 (1134)
Q Consensus 114 ~l~~l~~~~~~~~~~~~~~~~~----~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q~~~~~~~ 189 (1134)
+|..+-...++.+++....+.. ..-+|. .+..|.+++-+... +-..-+..+|+|++..++......
T Consensus 178 ~l~~~~~~~~i~~ne~~~~~~~~ky~i~~sr~-s~~lL~~~l~~~~~---------~~g~~i~~ii~~hldi~v~~~~~~ 247 (707)
T KOG0263|consen 178 QLLSLETIKHIKENETARAFRKNKYVIRLSRD-SFDLLLRFLQEDNN---------IGGTIIIKIINQHLDIDVFDGVMA 247 (707)
T ss_pred HHHhhhhHHHHhhhhhHHHHhhCcEEEEecHH-HHHHHHHHhhhhcc---------ccchHHHHHHHHHhCccccccccc
Confidence 9998888888877776665544 223332 22233333333222 234568889999988887654332
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCC----CCCCCCCCCCCCCCCCccccccccCCCCCCCCC
Q 001160 190 RPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFP----PIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHP 265 (1134)
Q Consensus 190 ~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~h~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1134)
+.......+ ..|---...+..+.+.+--.-..+.+++...++ .+..-.| - +.++- ++.-..+
T Consensus 248 r~~~~~~~~-~g~~~~~i~g~~~~e~~~~~~~l~~~~~e~~~~~~~~~~~e~~D----~-----~~~~~----~~~~~~~ 313 (707)
T KOG0263|consen 248 RRTTKPTAM-VGSEQESIAGEAKREINKQKVQLGLLLKEEEIEKKLPILLEVED----D-----PNEPD----NEKLKKP 313 (707)
T ss_pred cccccchhh-cccccccccccchhhcccceeeecccccchhhhhcccccccCcc----c-----ccccc----ccccccc
Confidence 210000000 000000000001111110000011112111100 0000000 0 00000 0000000
Q ss_pred CccCCCCCCCCCCcc-cccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeEeeCCCCCCccccCccccceEEEEec
Q 001160 266 SMAAGPPGFVQPSSA-VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN 344 (1134)
Q Consensus 266 ~~~~~~i~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~~~~~~~l~ 344 (1134)
++ ....+..+...+ ....+....|+.. ... ........ .+.+.-.....+.++..++.++.
T Consensus 314 ~~-~~~~~~~k~~d~~~ps~d~iPlPp~~-~~d-------~~~~~~~l---------~d~~kr~~l~~~~lpSic~YT~~ 375 (707)
T KOG0263|consen 314 KK-KKLLSEEKKRDPNAPSRDRIPLPPLK-QVD-------KLAELEAL---------KDEQKRVKLGRNSLPSICMYTFH 375 (707)
T ss_pred hh-hhhhhhhhccccCCCccccCCCCccc-chh-------HHHHHHHH---------HHHHHHhhcCCCCCCcEEEEEEE
Confidence 00 000000000000 0001111122210 000 00000000 00111112224667888888888
Q ss_pred -CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc--c-cccee---------eccccccccccccccccCCcCe
Q 001160 345 -QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA--H-KPFKV---------WDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 345 -h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~--~-~~~~~---------~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
....++|+.||+|+. ++|.|-.|..|++|.+...+... . ..+.. -++...........+.||.++|
T Consensus 376 nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 376 NTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 567899999999998 89999999999999998643111 0 00000 0111111122233478999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
..+.|+|+.++|++++.|+++++|.+.+..++- .+.||..+|+++.|+|-|- ++||+|.|++.++|......+++
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTARLWSTDHNKPLR 529 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCceeeeeecccCCchh
Confidence 999999999999999999999999999987655 6779999999999999998 99999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
.+.+|.+.|.|+.|+|+. .|+++||.|.++|+||+.++..+..+.+|.++|.+++|||+|++|++++. ++.|.+
T Consensus 530 ifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKI 603 (707)
T ss_pred hhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEE
Confidence 999999999999999977 89999999999999999999999999999999999999999999999974 889999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
||+.+++++..+.+|.+ .|.++.|+.+|..|++||.|.+|++||+..-
T Consensus 604 WDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999965 9999999999999999999999999998653
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=344.93 Aligned_cols=305 Identities=16% Similarity=0.272 Sum_probs=260.2
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeecccccccccccc-ccccCCcCeE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNA-LLNDAAISVN 412 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~ 412 (1134)
+....+.+.|+.+|.+++|+|-...++++|+.|-+.++|++... .......++ ...... .-......|+
T Consensus 168 ~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr--------h~~~~~~~s~~~nkdVT 239 (524)
T KOG0273|consen 168 PSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR--------HCIREGGKSVPSNKDVT 239 (524)
T ss_pred cccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh--------hhhhhhcccCCccCCcc
Confidence 34456667799999999999988768999999999999998741 111100000 000000 0011235799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++|+.+|..||+|+.||.+++|+..+. .+. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|.....
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEe
Confidence 9999999999999999999999998864 233 6778999999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+.-|..+-..+.|-.. ..+++++.|+.|+++.+....+..++.+|.+.|.++.|+|.|.+|++++. |++++||
T Consensus 314 f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiW 386 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIW 386 (524)
T ss_pred eeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEee
Confidence 9889988777887543 68999999999999999999999999999999999999999999999985 8899999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCC---------CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTR---------NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+.........+.+|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++.++..| ..+|++++|+|+
T Consensus 387 s~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~ 463 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPN 463 (524)
T ss_pred ecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEecCC
Confidence 9999999999999998 89999999976 36889999999999999999999999766 458999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+++|+|+.||.|.+|+..++
T Consensus 464 g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CcEEEecCCCCeeEeccccch
Confidence 999999999999999999888
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=337.56 Aligned_cols=583 Identities=14% Similarity=0.145 Sum_probs=431.2
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCe
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~ 431 (1134)
..|..-|..++++.+.+.+..+||.+.-..+.- -+.+...|.|++=..+--+.|.| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence 556666667888888999999999987665542 23577889998876554444433 34
Q ss_pred EEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eee----EEecCCCCCeEEEEee
Q 001160 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQ----YTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 432 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~i~~~ 506 (1134)
|.+|.. ++.++. .+..|...|.-+.- -|. .++++..++.+.||+...+ ..+ ..++...+.|+++. |
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 333332 45567777766543 466 7889999999999998874 221 11222233377764 5
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|+.--+.++.|+.+|.+.+|++++++.+..+......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5544467899999999999999999999999999999999999999889998874 888999999999999999976
Q ss_pred cCcceEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeeEEEEe-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 587 RKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+ .|++++|..||+.+. +|+..|.+.+||++..+.+..+. .| ...+....|-|....+++++.|+.+++|=..++
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 44 899999999997655 56677999999999988887775 34 347888999999999999999999999976544
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
.-..+.++
T Consensus 321 dg~pR~LR------------------------------------------------------------------------ 328 (910)
T KOG1539|consen 321 DGVPRLLR------------------------------------------------------------------------ 328 (910)
T ss_pred CCcchhee------------------------------------------------------------------------
Confidence 11111110
Q ss_pred CccceeccCCCCCccceeEeecCCcccccceEEEEEe-cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT-NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
...+|..+..++.|- .+|..+.+++.|++.+.+++-...++.+-.. ....
T Consensus 329 ----------------------~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~ 379 (910)
T KOG1539|consen 329 ----------------------SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNK 379 (910)
T ss_pred ----------------------eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccc
Confidence 012466777788877 7888899999999988887754333221111 0011
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCC----CEEEEEe--CCeEEEEECCCCeE-EEEec-----CCCCceEEEEEcC
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKND----SYVMSAS--GGKVSLFNMMTFKV-MTMFM-----SPPPAATFLAFHP 891 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg----~~la~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~ 891 (1134)
...+.........-- -.+|..+++...- .-++++. +..++.|++..... ...+. .-...+++++.++
T Consensus 380 ~~~kk~~~~~~~~~k-~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 380 KRAKKVNVFSTEKLK-LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccccchhhhc-CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 111100000000000 3456666665421 1233333 67899999987655 33333 1236799999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEe---cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL---KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l---~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
.|++.+.|+..|.|.+|++.+|-....+ ..|.++|++++...-++.++|++.+|-+++||..+...+....+.
T Consensus 459 -CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--- 534 (910)
T KOG1539|consen 459 -CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--- 534 (910)
T ss_pred -cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---
Confidence 9999999999999999999999888888 589999999999888889999999999999999986633322111
Q ss_pred CCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
..+.++..+.....+|+ ..|-.|+++|. +.+..+.+ .+|.+.|++++|||||++|++++.|++|++||+
T Consensus 535 ------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 535 ------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred ------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 35678888888888888 57789999999 44444444 567999999999999999999999999999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC-CcEEEEec
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEP 1099 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D-g~v~vW~~ 1099 (1134)
.++.++..+... .-++++.|+| .|++||+...| .-|++|.-
T Consensus 606 pt~~lID~~~vd-----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 606 PTGTLIDGLLVD-----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cCcceeeeEecC-----------CcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 999999877533 5677899999 78999999999 57999963
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=340.93 Aligned_cols=569 Identities=13% Similarity=0.140 Sum_probs=373.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+..+++|++||++|+ ++|+|- ..-.++||++.....+.. +..|+..|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 667999999999998 788875 455899999998765553 6689999999999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE---ecCCC
Q 001160 423 LGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FEGHE 497 (1134)
Q Consensus 423 las~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~~h~ 497 (1134)
+++.+. |-.|.+||++..-... -+.-...|..++|+.||. |++|.+ ...|++|.++.++.... +.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5578889887543222 122456799999999999 888887 67899999987763221 12211
Q ss_pred CCeEEEEeeccCCccEEEEE-------------ecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 498 APVYSVCPHHKESIQFIFST-------------AIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~-------------~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.-...+.+. .+++.+ +..|.+.-+. ..+.+-.+ ......-.|++.+ .++++++..
T Consensus 210 ~~lg~lr~n-----~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRFN-----EFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhccccccc-----hhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 111111110 111111 1122222221 11110000 0011223455554 467887775
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccC-----------------------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRK-----------------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-----------------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
++.|++++..+-..+.++.-.+. ...-++.|++....+.+...|..+++||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 88999999877554444321110 02335779999999999999999999999875
Q ss_pred eeEEEEe-CCCCCCCcceEEEc------------cCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 621 NMLTTVD-ADGGLPASPRLRFN------------KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 621 ~~~~~~~-~~~~~~~v~~~~~s------------~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
+.+.... .-.|...|+.+.-- |.+ .+++++.|++||+|++..+. --..+.......
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~--------- 425 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSA--------- 425 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeeccccc-ccceeecccchh---------
Confidence 4332211 00111233333322 222 48899999999999997641 101111000000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
..++.. ..|+..-+ -.|...-++|-.... .
T Consensus 426 ---~l~ki~------------------------------------y~d~~~q~-~~d~~~~~fdka~~s---------~- 455 (1080)
T KOG1408|consen 426 ---NLSKIP------------------------------------YEDSTQQI-MHDASAGIFDKALVS---------T- 455 (1080)
T ss_pred ---hhhcCc------------------------------------cccCchhh-hhhccCCcccccchh---------h-
Confidence 000000 00000000 000011111111000 0
Q ss_pred CcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
-.....+.++++||+|++|++|..-|.++||++..... ...+ ..| +.+|.|+.
T Consensus 456 -~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-----------------------~~~~--eAH-esEilcLe 508 (1080)
T KOG1408|consen 456 -CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-----------------------TCFM--EAH-ESEILCLE 508 (1080)
T ss_pred -cCcccceEEEEECCCcceecccCccCceEEEEehhhhh-----------------------hhhe--ecc-cceeEEEe
Confidence 11345689999999999999999999999999753211 0112 238 99999999
Q ss_pred ecc---CCCEEEEEe-CCeEEEEECCCC-eEEEEecCCCCceEEEEEcCCCC-cEEEEEeCCCcEEEEEcCCceEEEEec
Q 001160 848 LSK---NDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDN-NIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 848 ~s~---dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~-~~lasg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
||. ..++||+++ |.-|.|||+... .++.++.+|...|+++.|.-.++ ..+++++.|+.|.+--.....-...+.
T Consensus 509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 986 457999999 889999999754 56788999999999999987332 567788899887664333111111222
Q ss_pred Cc-----ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECC
Q 001160 922 GH-----QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1134)
Q Consensus 922 ~h-----~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1134)
.| ...++.|+..|..+++++++.|..|+|+|+++++..+. .+...+|. +....+...|.|.|+|+ ++|+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~--FKgs~~~e---G~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS--FKGSRDHE---GDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee--ecccccCC---CceEEEEECCCccEEEEeecCC
Confidence 12 24588999999999999999999999999999996543 23333333 56778999999999999 7999
Q ss_pred eEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 996 ~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
++.++|. .++|+... .||...|+.+.|++|.+.|++++.||+|.||.+...
T Consensus 664 tl~~~Df~sgEcvA~m---~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 664 TLCFVDFVSGECVAQM---TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEeccchhhhhh---cCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999999 88888775 567999999999999999999999999999999853
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=339.82 Aligned_cols=282 Identities=18% Similarity=0.276 Sum_probs=265.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC--CCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--GLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g~~ 422 (1134)
.+.+|..+.||+|++ ++|||+-+|.++||+..+...+.. +.+|.+.|.++.|+|. +..
T Consensus 174 d~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~~~ 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSDLN 233 (459)
T ss_pred CCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCccc
Confidence 456999999999998 799999999999999998876654 7899999999999996 679
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
+|+|+.||++++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+....||...|.+
T Consensus 234 lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~ 308 (459)
T KOG0272|consen 234 LATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS 308 (459)
T ss_pred eeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccce
Confidence 9999999999999999877666 7889999999999999999 9999999999999999999999889999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++|++++ .++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|-.+++|+. |++++|||++..+.+.+
T Consensus 309 iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 309 IAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYT 382 (459)
T ss_pred eEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeeccccccee
Confidence 9998755 89999999999999999999999999999999999999999999999985 88999999999999999
Q ss_pred ecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
+.+|.+ .|+.+.|+| .|.+|++++.|+++++|...+..+++.+.+|.+ .|.++.+++|+..+++++.|.++++|.
T Consensus 383 ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 999998 899999998 678899999999999999999999999998855 799999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=334.23 Aligned_cols=285 Identities=20% Similarity=0.319 Sum_probs=262.8
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+...+|..+.||+|++.||+|+.+|.+++|+..+...+. +|.+|...|.++.|+|......+|||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 567889999999999999999999999999999875554 89999999999999998422379999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+..++..+.+|...|..++|+|++ ++|+|++.|.+-++||+.+........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 999999999999999999999976 99999999999999999999999999999999999999999999999986
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~ 644 (1134)
|..-+|||+++|+++..+.+|.+ .|.+++|+|+|..+++||.|++++|||++....+.++..|. +-|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc--chhhheEecccCC
Confidence 77789999999999999999988 99999999999999999999999999999999998888774 4799999999 78
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCc
Q 001160 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.+|++++.|++++||...+. .+++.+.|
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksLaG--------------------------------------------------- 428 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSLAG--------------------------------------------------- 428 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhhcC---------------------------------------------------
Confidence 99999999999999998877 55555544
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEee
Q 001160 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~ 800 (1134)
|.+.|.++.+++|++.+++++.|.++++|.
T Consensus 429 ----------------------------------------------He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 ----------------------------------------------HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------------CccceEEEEeccCCceEEEeccCceeeecc
Confidence 667889999999999999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=305.35 Aligned_cols=291 Identities=17% Similarity=0.286 Sum_probs=264.3
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
.++|+ |.+.|.++.|++|.+ .++++++||.+.|||.-+..+.+. ++-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 46777 999999999999998 578999999999999988776653 344678999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC---CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPT---GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~---~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
.|+++|+|+-|+...||++.+. ...+...++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999865 22344557889999999999999775 99999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.+.|.++.+.|+ +++.+++|+.|+..++||++.+.+...+.+|...|++++|.|+|.-+++++. |++.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeec
Confidence 9999999999986 5699999999999999999999999999999999999999999999999984 8889999999
Q ss_pred CCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
..+.+..|..... ..|++++|+..|++|++|..|..+.+||.-.++.+..+.+|.. .|.++..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhH
Confidence 9999888875432 3699999999999999999999999999999999999997754 899999999999999999999
Q ss_pred cEEEEE
Q 001160 655 GIKILA 660 (1134)
Q Consensus 655 ~i~iw~ 660 (1134)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=327.48 Aligned_cols=593 Identities=15% Similarity=0.212 Sum_probs=399.2
Q ss_pred ccccCccccceEEEEec-CCCCeeEEEEecCCC--eEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
++..+|........++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++........ .+
T Consensus 35 ~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~ 97 (764)
T KOG1063|consen 35 AIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY-----------------TI 97 (764)
T ss_pred eEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE-----------------ee
Confidence 33444444445566666 999999999999876 24789999999999999843322211 13
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
.+|. +.+++++.......+...|+.+.+||.+..+.. .....+.--..--.|+++.++.+.++++.|+.+..|.++.
T Consensus 98 ~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 98 QGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred cCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 4444 455555544444444578999999999654411 0011111112223567777866666788888898999887
Q ss_pred CCCC--eeeEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEccCCC------------------------c-e-
Q 001160 484 VVAG--RKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLG------------------------S-R- 534 (1134)
Q Consensus 484 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~------------------------~-~- 534 (1134)
-.++ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... . .
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 5543 45678999999999999975543 4688999999999999875332 0 0
Q ss_pred -----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEec----CccCcceEEEEEeCCCCEE
Q 001160 535 -----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYS----GFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 535 -----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~~l 603 (1134)
..+.+|..+|+++.|+|.+..|++++. |.++.+|...+. -.+.... ++.........|+|+++.+
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 023488999999999999988888876 777999987654 3333322 2223357788899999999
Q ss_pred EEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 604 LAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
++-+..|..++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|+|-.-..+.....+..+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP-------- 403 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP-------- 403 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc--------
Confidence 9999999999998333 2233333344567789999999999999999999999998654221111111000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 404 -------------------------------------------------------------------------------- 403 (764)
T KOG1063|consen 404 -------------------------------------------------------------------------------- 403 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccc----------------cCCCCCCccc------------
Q 001160 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT----------------ERNPSGKATA------------ 814 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~----------------~~~~~~~~~~------------ 814 (1134)
+.|...+++++|-+....+++++....+|+++.+.. ...|++....
T Consensus 404 ------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~ 477 (764)
T KOG1063|consen 404 ------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG 477 (764)
T ss_pred ------ccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence 113344444444443333444444445555444321 0000000000
Q ss_pred -----------------ccCcccccCCCCC--------ccccccCCCCCCCCceEEEEeccCCCEEEEEe-C-----CeE
Q 001160 815 -----------------NVAPQLWQPPSGT--------LMTNDINESKPTEESAACIALSKNDSYVMSAS-G-----GKV 863 (1134)
Q Consensus 815 -----------------~~~~~~w~~~~~~--------~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d-----g~i 863 (1134)
.....+..+.... +....+-| | ...|++++.+|+|+++|++. . ..|
T Consensus 478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG--H-GyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG--H-GYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc--C-ceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 0000111111110 01112333 8 99999999999999999986 2 349
Q ss_pred EEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce----EEEEecCcccceEEEEEecCCCEE
Q 001160 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTKLKGHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~----~~~~l~~h~~~i~~l~~s~d~~~l 939 (1134)
++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|...... .....+.|+.-|++..|+||+.++
T Consensus 555 ~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 555 RLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred EEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 9999999999999999999999999999 99999999999999999875432 123467899999999999999999
Q ss_pred EEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEECCC----Cc-EEEEE-ECCeEEEEeCC--------
Q 001160 940 VSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHND----QT-HLLVV-HESQISVYDSK-------- 1003 (1134)
Q Consensus 940 ~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~-~l~~~-~d~~v~vwd~~-------- 1003 (1134)
||+|+|.+|++|..... +.+... ....+. ..|+.+++.|- .. .+++| ..|.|.+|...
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~---a~~~~~---~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~ 707 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRF---ACLKFS---LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV 707 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhh---chhccC---CceeeEEeeccccccccceEEEEecccEEEEEecccccccccc
Confidence 99999999999999886 332221 111111 56888888763 22 44555 57899999852
Q ss_pred --CcceeccCCCCCCCCCeEEEEEccCC----------CEEEEEecCCcEEEEeCC
Q 001160 1004 --LECSRSWSPKDALPAPISSAIYSCDG----------LLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1004 --~~~~~~~~~~~~h~~~v~~v~~s~dg----------~~l~~~~~dg~I~vwd~~ 1047 (1134)
...........+|...|+.+.|+|-. ..|++|+.|.+++++++.
T Consensus 708 ~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 708 GTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 11112233345678899999999742 257999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=322.69 Aligned_cols=475 Identities=15% Similarity=0.261 Sum_probs=356.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.+.|.++.|+|....+ .++-+.|.|.|||.++...+.+ +.-..-+|.+..|-+-.++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 67899999999999954 4577899999999999887764 233567899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i 503 (1134)
+|+.|..|+||+..+++.+. .|.+|.+-|.+++.+|... +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 8999999999999999988 8999999999999999864 6778999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC--CEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--TRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+|+|... +.+++++.|++|++|.+....+..++.+|...|+|+.+-+-| .+|++++. |..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999855 899999999999999999999999999999999999998855 58888874 8889999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++.||.. .|+.++|+|.-..+++|++||+++||+..+-++..++.... ..++|++-.+.+..+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999988888876543 47999999998888999999888765 22
Q ss_pred CCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccc
Q 001160 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1134)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1134)
-.+ .+.- ...+.
T Consensus 298 gre-eP~v-------------------------------------------------------------sMd~~------ 309 (794)
T KOG0276|consen 298 GRE-EPAV-------------------------------------------------------------SMDSN------ 309 (794)
T ss_pred cCC-CCce-------------------------------------------------------------eecCC------
Confidence 211 0000 00000
Q ss_pred cccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccc
Q 001160 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1134)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w 821 (1134)
| -.+|.... .|..+.. -+.+.++
T Consensus 310 ---g-KIiwa~~~-------------------ei~~~~~-------ks~~~~~--------------------------- 332 (794)
T KOG0276|consen 310 ---G-KIIWAVHS-------------------EIQAVNL-------KSVGAQK--------------------------- 332 (794)
T ss_pred ---c-cEEEEcCc-------------------eeeeeec-------eeccCcc---------------------------
Confidence 0 11222111 1111100 0000000
Q ss_pred cCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
++..|+.+....+..+.-.-....++.||+|+++++++||.-.||..-..+ ..+.+.-....|++ |.+..|+-.
T Consensus 333 ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRe 406 (794)
T KOG0276|consen 333 EVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRE 406 (794)
T ss_pred cccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEe
Confidence 111121111111100000112345788999999999999999999743211 12445667889999 777777787
Q ss_pred CCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE
Q 001160 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1134)
.++.|.++ ++.+..+.++.... +..+ -.|.+|...+ ++.+++||.++++.++ ..+ .....+.
T Consensus 407 s~~~vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~------v~~k~v~ 468 (794)
T KOG0276|consen 407 SNGNVKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVRS-SDFLCFYDWESGELVR-----RIE------VTSKHVY 468 (794)
T ss_pred cCCceEEE--ecceeccccccccc---eeee-cCCceEEEEe-CCeEEEEEcccceEEE-----EEe------eccceeE
Confidence 88999998 67777666653211 1111 2355555555 5569999999988433 222 1246799
Q ss_pred ECCCCcEEEEEECCeEEEEeC
Q 001160 982 FHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 982 fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
|+.+|.+++++.|....++..
T Consensus 469 w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 469 WSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred EecCCCEEEEEecCceeEEEe
Confidence 999999999998888666655
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=300.41 Aligned_cols=297 Identities=22% Similarity=0.318 Sum_probs=254.8
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+..+++ |++.|+.++..+.+..++.+++.|.++.+|++.......- .+...+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEc
Confidence 455666 9999999999999888999999999999999876533221 1122378999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH- 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h- 496 (1134)
+||++.++++.|+++++||+.+++..+ .|.+|...|.+++|++|++ .+++|+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999996555 7889999999999999999 79999999999999965 5555665544
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 -~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.+.|.|+.|+|..+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++++ +++.+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg----kdg~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG----KDGEAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC----CCceEEEEEcc
Confidence 7899999999998779999999999999999999999999999999999999999999999987 48889999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-------CCCcceEEEccCCCEEE
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-------LPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~ 648 (1134)
.++.+..+.... .|++++|+|+.-.|+. ..+..|+|||++++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999988877654 7999999998655544 4556699999999988877753321 22346789999999999
Q ss_pred EEeCCCcEEEEECC
Q 001160 649 VTTSDNGIKILANS 662 (1134)
Q Consensus 649 ~~~~dg~i~iw~~~ 662 (1134)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=324.61 Aligned_cols=559 Identities=14% Similarity=0.196 Sum_probs=410.3
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
.++..-+ +.+.|+|++=..+-- ++|+ ...|.+|-- |+.+. ....+|...|.-+.
T Consensus 67 ~ll~vs~~lp~~I~alas~~~~v-y~A~---g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~- 121 (910)
T KOG1539|consen 67 NLLFVSKPLPDKITALASDKDYV-YVAS---GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL- 121 (910)
T ss_pred EEEEecCCCCCceEEEEecCceE-EEec---CcEEEEEEc--cceEE------------------EEeccccceEEEEe-
Confidence 3343333 788999998776642 2222 346666653 22221 12445666666554
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC-Cccce-eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPT-GELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~-~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+=|.+++++..++.+.||+..++ +.... ...++...+.|+++. +|.---..++.|+.+|.+.+|++++++.+++++
T Consensus 122 -~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~ 199 (910)
T KOG1539|consen 122 -PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ 199 (910)
T ss_pred -eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEec
Confidence 35789999999999999999884 22111 112222222377664 344322268899999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
++...|+++.-+|-- +.++.|..+|+|.++++...+.+..+....+.|++++|.-||+.+++.+. ..|.+.+||+
T Consensus 200 ~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDL 274 (910)
T KOG1539|consen 200 EFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDL 274 (910)
T ss_pred ccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEc
Confidence 999999999987766 79999999999999999999999999988899999999999998887663 4677999999
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEc-cCCCEEEE
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFN-KEGSLLAV 649 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s-~d~~~l~~ 649 (1134)
+..+.+......+.+.+....|.|....+++++.|+.+++|=.+++. .+..-.+ |..+..++.|. .+|..+.+
T Consensus 275 e~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G--Hs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 275 EKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG--HSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred CCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC--CCCCchheeeeccCcEEEEe
Confidence 99988888775554488899999999999999999999888665433 3333344 45577899998 58899999
Q ss_pred EeCCCcEEEEECCCchhhhhhhc-CCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCC
Q 001160 650 TTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1134)
++.|++++.+++... ..-+.+. .|.... -
T Consensus 353 a~~Drt~r~fs~~~e-~~~~~l~~~~~~~~--------------~----------------------------------- 382 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISE-SQSQELGQLHNKKR--------------A----------------------------------- 382 (910)
T ss_pred cccCcchhhhhhhHH-HHhHhhcccccccc--------------c-----------------------------------
Confidence 999999999887544 1111111 111000 0
Q ss_pred CcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC-----CcceEEeeccCeeEEeeccc
Q 001160 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~v~vw~~~~ 803 (1134)
+.+.+.... ...-.+|..+++... .+.+.+.-++...+.|++..
T Consensus 383 ----------------kk~~~~~~~---------------~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 383 ----------------KKVNVFSTE---------------KLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ----------------ccccccchh---------------hhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 000000000 001122333333321 12223333346677777643
Q ss_pred ccCCCCCCcccccCcccccCCCCCcc--ccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEe---
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLM--TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF--- 877 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~--- 877 (1134)
.. .|+-. ...++. . ...+++++.++.|++.+.|. .|.|.+|++++|-....+
T Consensus 432 ~~-------------------~G~~~L~~~~~~~--~-~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~ 489 (910)
T KOG1539|consen 432 KT-------------------SGRHVLDPKRFKK--D-DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS 489 (910)
T ss_pred cc-------------------cccEEecCccccc--c-CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence 11 11100 000111 1 57899999999999999998 899999999999998888
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
..|.++|+.++... -++.+++++.+|.+.+||..+..++..++ -...+.++..+.....+|.+..|-.|+++|+.+.+
T Consensus 490 ~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred ccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 57999999999988 78899999999999999999888888877 34568889999888999999999999999999866
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+.+...||. ..+++++|||||++|++ +.|++|++||+ ++.++..+.. ..+++++.|||+|.+|||+
T Consensus 568 -----vvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----d~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 568 -----VVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----DSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred -----hhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----CCcceeeEECCCCCEEEEE
Confidence 566777887 58999999999999999 67999999999 8888776655 5799999999999999999
Q ss_pred ecC-CcEEEEeCC
Q 001160 1036 FCD-GAIGVFDAE 1047 (1134)
Q Consensus 1036 ~~d-g~I~vwd~~ 1047 (1134)
..| .-|++|.=.
T Consensus 636 Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 636 HVDQNGIYLWSNK 648 (910)
T ss_pred EecCceEEEEEch
Confidence 999 669999643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=322.39 Aligned_cols=593 Identities=15% Similarity=0.183 Sum_probs=408.8
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC---EEEEEeC
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL---MLGVAFS 428 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~---~las~~~ 428 (1134)
..|.|.+ ++|.|. ...|.+||..+..... .+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence 3456665 455554 5789999977653322 2789999999999999888 8999999
Q ss_pred CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--eeEEecCCCCC--eEEEE
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAP--VYSVC 504 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~--v~~i~ 504 (1134)
|+.|++|.+.. +.+.....+++|...+.| +..... .......|+.+.+||.+..+ +...+.-..+. -.|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 444555577777655544 443333 22333789999999985555 22222212222 23455
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCC--CceeEecCCCCcEEEEEECCCCC---EEEEEeeCCCCCCcEEEEeCCCCe-
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADGT---RLFSCGTSKEGESHLVEWNESEGA- 578 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1134)
+.+..+.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555443345666777888888865533 33557889999999999987655 444554 58889999874322
Q ss_pred --------------------eEEE----------ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--eEEEE
Q 001160 579 --------------------IKRT----------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTV 626 (1134)
Q Consensus 579 --------------------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~ 626 (1134)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+.. -+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 1111 237777 99999999999999999999999999887642 22222
Q ss_pred e--CC-CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001160 627 D--AD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 627 ~--~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
. .- +.........|+|++..+++-+..|..++|...+..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-------------------------------------- 349 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-------------------------------------- 349 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc--------------------------------------
Confidence 1 11 223347889999999999999999999999832220
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC
Q 001160 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
.|... .-..+|...|+.++|.|.
T Consensus 350 ---------------------------------------------~w~~~------------~~iSGH~~~V~dv~W~ps 372 (764)
T KOG1063|consen 350 ---------------------------------------------FWTQE------------PVISGHVDGVKDVDWDPS 372 (764)
T ss_pred ---------------------------------------------ceeec------------cccccccccceeeeecCC
Confidence 01100 001348889999999999
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC-Ce
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG-GK 862 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd-g~ 862 (1134)
|.+|++.+.|.+-|++.-...+. . |. .+. +..-| ...++|++|-+....+++|.| .-
T Consensus 373 GeflLsvs~DQTTRlFa~wg~q~-------~------wH-----Eia---RPQiH-GyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 373 GEFLLSVSLDQTTRLFARWGRQQ-------E------WH-----EIA---RPQIH-GYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred CCEEEEeccccceeeeccccccc-------c------ee-----eec---ccccc-cccceeeehccCCceeeeccccee
Confidence 99999999999999875321110 0 11 111 11126 778999999885556666664 56
Q ss_pred EEEEECCC-------------------------------------------Ce---------------------------
Q 001160 863 VSLFNMMT-------------------------------------------FK--------------------------- 872 (1134)
Q Consensus 863 i~vwd~~~-------------------------------------------~~--------------------------- 872 (1134)
+|+|+... |.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 88887621 00
Q ss_pred ------EEEEecCCCCceEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEE
Q 001160 873 ------VMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1134)
Q Consensus 873 ------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1134)
.++.+.||...|.+++.+| +++++|+++.. ..|++|+..+...+..+.+|+-.|+.|+|||||++|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 0112347889999999999 99999999855 35999999999888899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CC--cceeccCCCCCCC
Q 001160 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KL--ECSRSWSPKDALP 1017 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~--~~~~~~~~~~~h~ 1017 (1134)
+++|.++.+|........... ......|. .-|.++.|+||++++++ +.|++|+||.. +. +++..+. ...+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a-~~~~~ 664 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA-CLKFS 664 (764)
T ss_pred eecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc-hhccC
Confidence 999999999998654322111 22234444 46788999999999999 67999999999 44 4554432 23458
Q ss_pred CCeEEEEEcc-----CCCEEEEEecCCcEEEEeCCCcceeeecC---CcccccccccCCCCccEEEeecCC---------
Q 001160 1018 APISSAIYSC-----DGLLVYAGFCDGAIGVFDAETLRFRCRIG---PSAYIPTYAVSNTAHPLVIAPHPS--------- 1080 (1134)
Q Consensus 1018 ~~v~~v~~s~-----dg~~l~~~~~dg~I~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--------- 1080 (1134)
..|+++++.| .+..+++|-+.|.|.+|....-....+.. .....+. ..++...+.-+.|.|.
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~aV~rl~w~p~~~~~~~~~~ 743 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCA-TIGPDSAVNRLLWRPTCSDDWVEDK 743 (764)
T ss_pred CceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccc-ccChHHhhheeEecccccccccccc
Confidence 8999999986 23378899999999999965211111111 0010111 1123344456777764
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 001160 1081 EPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1081 d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+...|++|++|.+++++++.
T Consensus 744 ~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 744 EWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ceeEEeeecccceeEEeecc
Confidence 22456999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.47 Aligned_cols=585 Identities=15% Similarity=0.231 Sum_probs=400.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
+..|.+++|+|...+ +.++-..|.|++||++-+.++.. +.+|.++|..++|+|++.++++
T Consensus 9 SsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred cccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEEe
Confidence 568999999999985 55778899999999999988875 6789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
|+.|-.|+||+.++.+++. ++.||-+.|..+.|++.-. +|+++|+|.+|+||+.++++++..+.||...|.|..|
T Consensus 69 GGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqF 143 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQF 143 (1202)
T ss_pred cCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeecc
Confidence 9999999999999987665 8889999999999999988 8999999999999999999999999999999999999
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+|.. +.++++|.|.+||+||+...+....-.+ ++.=...+..+ ...++-..+.-....+.|
T Consensus 144 hptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 144 HPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred CCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeecc
Confidence 9987 7999999999999999975443322111 00000001110 011111111223456788
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
|.. .|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|.+.|.++-|+|...++++.+.|++|+|||+...
T Consensus 205 HDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR- 282 (1202)
T KOG0292|consen 205 HDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR- 282 (1202)
T ss_pred ccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-
Confidence 877 899999999999999999999999999987665554445566779999999999999999999999999999877
Q ss_pred hhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccC
Q 001160 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1134)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
..++.++..... +|.+ ..-|..+.++++.|+
T Consensus 283 t~v~tfrrendR---------------------------FW~l----------------------aahP~lNLfAAgHDs 313 (1202)
T KOG0292|consen 283 TSVQTFRRENDR---------------------------FWIL----------------------AAHPELNLFAAGHDS 313 (1202)
T ss_pred cceeeeeccCCe---------------------------EEEE----------------------EecCCcceeeeecCC
Confidence 555555443321 1111 122456677888888
Q ss_pred ccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCC
Q 001160 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1134)
Q Consensus 746 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 825 (1134)
.+.+|.++. +.++ .+++ +..|+-.- +..|+-+|+.+.+..+-..
T Consensus 314 Gm~VFkleR-----------------Erpa--~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~-------------- 357 (1202)
T KOG0292|consen 314 GMIVFKLER-----------------ERPA--YAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVAS-------------- 357 (1202)
T ss_pred ceEEEEEcc-----------------cCce--EEEc--CCEEEEEc-cceEEeeeccccccceeEe--------------
Confidence 888888773 1112 2222 22233322 7788888876533211110
Q ss_pred CCccccccCC-CCCCCCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEe-c--CCCCceEEEEEcCCCCcEEE
Q 001160 826 GTLMTNDINE-SKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMF-M--SPPPAATFLAFHPQDNNIIA 898 (1134)
Q Consensus 826 ~~~~~~~~~~-~~h~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~~~~~la 898 (1134)
+.. ... ..+..++.++|....+..++ .|...++.+........- . .......++-.. .+++.+
T Consensus 358 -------lr~~g~~-~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fva--rNrfav 427 (1202)
T KOG0292|consen 358 -------LRRPGTL-WQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVA--RNRFAV 427 (1202)
T ss_pred -------ccCCCcc-cCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEE--ecceEE
Confidence 111 001 46788999999777666664 466666665432110000 0 011122222222 223333
Q ss_pred EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001160 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
.--.+..+.+=++.+. ..+.+..- ..+..+-+..+|.+|+.. ...|.++|++..+...+..+ ..+.
T Consensus 428 l~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~vk 493 (1202)
T KOG0292|consen 428 LDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKVK 493 (1202)
T ss_pred EEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------Ccee
Confidence 3333455555555432 22333221 234556666677666543 34599999998764332211 3578
Q ss_pred EEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 979 KVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 979 ~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.+.||+|+.+++.-+..+|.+.+.+...+..+.. .-.|.+-+|..||-++++....=.-.+-+-++| .+.++..
T Consensus 494 yvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihE----tiriksgawde~gVfiYtT~nHikYal~~GD~G-IikTLd~- 567 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSKHTITIADKKLELLCSIHE----TIRIKSGAWDEDGVFIYTTLNHIKYALENGDSG-IIKTLDK- 567 (1202)
T ss_pred EEEEcCccchhhhcccceEEEEecchhheecchh----eeEeeeceeccCceEEEEehhhhhhhhccCCcc-eEEeccc-
Confidence 9999999999999888999999987776665543 467889999999988887654322222222222 2334332
Q ss_pred ccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001160 1059 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
.++++.+ .|+.+.+-..|+.+....+...|-.|
T Consensus 568 ----------~iyitkv-----~gn~V~cl~rd~~~~~~~IDptEy~F 600 (1202)
T KOG0292|consen 568 ----------PIYITKV-----KGNKVFCLNRDGEIECLTIDPTEYRF 600 (1202)
T ss_pred ----------ceEEEEe-----eCCEEEEEecCCCeEEEeechHHHHH
Confidence 2555555 57899999999999998887666433
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=296.09 Aligned_cols=249 Identities=16% Similarity=0.220 Sum_probs=229.9
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+|+||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..++|+|.|+ ++|.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 378999999999999999999999999999999998876555 4445678899999999999 89999999999999
Q ss_pred ECCCC------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC-CCCE
Q 001160 483 DVVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA-DGTR 555 (1134)
Q Consensus 483 d~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 555 (1134)
++.+. +..+.+.+|.+.+.++.|..+ ..|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99865 345679999999999999763 6899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++++. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+.......+|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999986 77799999999999999999998 8999999999999999999999999999999999999877777889
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++||..|++|++|..|.++.+||.-.+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc
Confidence 99999999999999999999999997555
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=283.61 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=244.7
Q ss_pred CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 001160 358 QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 358 g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~ 437 (1134)
..-|||++++|.+|++|...+|.+..+ +....+.|+.+.+.||++.||+++.. .|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEc
Confidence 345899999999999999999998875 34456789999999999999999655 5999999
Q ss_pred CCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEE
Q 001160 438 NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1134)
Q Consensus 438 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 517 (1134)
+++..- +..++.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998764 4558899999999999999999 89999999999999999977766665 78999999999976 789999
Q ss_pred ecCCeEEEEEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC------eeEEEecCccCcc
Q 001160 518 AIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG------AIKRTYSGFRKRS 590 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~------~~~~~~~~~~~~~ 590 (1134)
..+|.|++||+.+..+...+. .....|.++...|||++++++. ..|..++|++-++ +++..++.|.. .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n----nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN----NKGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec----CCccEEEEEccCCCccccceEhhheecccc-e
Confidence 999999999999876655444 3456899999999999999885 4788999998754 35667888877 7
Q ss_pred eEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 591 LGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
+..+.+|||+++|+++|.|.+++||+.++. +....++ ++...+..++||.||.+|++|+.|+.+++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888889999999999999999999999988 3334444 44568999999999999999999999999999999 6666
Q ss_pred hhcCCcc
Q 001160 670 MLEGRAM 676 (1134)
Q Consensus 670 ~~~~~~~ 676 (1134)
...+|..
T Consensus 295 qy~gh~K 301 (311)
T KOG0315|consen 295 QYQGHHK 301 (311)
T ss_pred ecCCccc
Confidence 7777654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=293.41 Aligned_cols=539 Identities=17% Similarity=0.219 Sum_probs=387.5
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
.+-+-|.|..+...+ +.+.+++++..... .+.+|...|.|++.+||.-.+|+|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCcccc
Confidence 455677777433333 35677777553222 1578999999999999999999875444
Q ss_pred --------eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCc--EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 431 --------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ--LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 431 --------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~--~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
.+++||..+-..+. .+......|.|++|++-+.. +..+--+.+..+.+||.+.+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 59999977655444 55566778999999985332 222334567789999999988887777778889
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE---ecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD---YDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
....|+|..+ -++.....+.+.+|+.+.+..... +.. ....|.|++|.++|..+-. |.+|.|.||+..+
T Consensus 204 ~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----cCCceEEEEeCCC
Confidence 9999999874 444555578999999987665442 222 2357999999999987643 3488899999998
Q ss_pred CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 577 GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.+..+....|.+ .|.+++...+|.. ++|+.|+.|..|| ..-+.++..+.+.....|..++=...+ |++|+..+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888887777666 8999999999865 4599999999999 556666666666666677766643322 7777777666
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
..=.++++..
T Consensus 352 L~Gt~~~~f~---------------------------------------------------------------------- 361 (626)
T KOG2106|consen 352 LQGTLENGFT---------------------------------------------------------------------- 361 (626)
T ss_pred EEeeecCCce----------------------------------------------------------------------
Confidence 5544443310
Q ss_pred ccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCccccc
Q 001160 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
+.-.+|......++..|+..++++++.|+.+++|+-. +
T Consensus 362 -----------------------------~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~--k----------- 399 (626)
T KOG2106|consen 362 -----------------------------LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH--K----------- 399 (626)
T ss_pred -----------------------------EEEEecccceeeEEcCCChhheeeccCcceEEEccCC--c-----------
Confidence 0002366678899999999999999999999999711 0
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc
Q 001160 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 895 (1134)
.+|.. . - ..++.|+.|+|.| .+|.|. .|...|.|.++...+..-. ...++++++|+| +|.
T Consensus 400 --~~wt~----------~---~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~ 460 (626)
T KOG2106|consen 400 --LEWTK----------I---I-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGA 460 (626)
T ss_pred --eeEEE----------E---e-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCC
Confidence 12221 1 1 6778999999999 899998 8999999999855544444 488999999999 999
Q ss_pred EEEEEeCCCcEEEEEcCCce-EEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001160 896 IIAIGMEDSSVQIYNVRVDE-VKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~-~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1134)
+||+|+.|+.|+||.+..+. ..... +.|..+|+.+.||+|+++|.+.+.|-.|..|.-...+..
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~-------------- 526 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI-------------- 526 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc--------------
Confidence 99999999999999987543 22222 334488999999999999999999999999943332211
Q ss_pred CcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceee
Q 001160 974 LVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~ 1053 (1134)
..+..+.|....-.|-. ......|...|..++-|.+.+++|+|...|.|++|...--...+
T Consensus 527 -ts~kDvkW~t~~c~lGF------------------~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA 587 (626)
T KOG2106|consen 527 -TSVKDVKWATYTCTLGF------------------EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRA 587 (626)
T ss_pred -ceecceeeeeeEEEEEE------------------EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcc
Confidence 11333443322111100 01113346778888889999999999999999999987544332
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
.. |++ -+|+..+.+++|...| ..+++.+.|.+|..|++
T Consensus 588 ~~--he~-----~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 588 PS--HEY-----GGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cc--eee-----ccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 22 222 2555778899999966 56666669999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=304.09 Aligned_cols=464 Identities=16% Similarity=0.212 Sum_probs=350.4
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 34589999999999999999999999999999999987776 5666788999999998777 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
..+++.++.|..|.+.|.+++.+|.. .+++++|+|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++.
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999987 79999999999999999864 45678999999999999999 5577888886
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
|++|++|.+.+..+..++.+|.. .|+|+.+-+.| .++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 88899999999999999999988 89999998755 7999999999999999999999999998855 799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|+|.-.++++|+.||+++||+..+- ++...+..
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999998765 33222211
Q ss_pred cccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEe
Q 001160 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw 799 (1134)
.-.++.+++..+.+..++.|..+|.+.+=
T Consensus 268 ---------------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 268 ---------------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred ---------------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 22456677777777777777777766551
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC--CeEEEE------ECCCC
Q 001160 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG--GKVSLF------NMMTF 871 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd--g~i~vw------d~~~~ 871 (1134)
+ ......+..++.|+.+-+... -.+.+- ++..|
T Consensus 297 -l--------------------------------------greeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~Dg 337 (794)
T KOG0276|consen 297 -L--------------------------------------GREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDG 337 (794)
T ss_pred -c--------------------------------------cCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCC
Confidence 1 122223444555544433221 111111 22233
Q ss_pred eEEEE----ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCc
Q 001160 872 KVMTM----FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947 (1134)
Q Consensus 872 ~~~~~----~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~ 947 (1134)
+.+.. +-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|....+.--.++.
T Consensus 338 ErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~ 410 (794)
T KOG0276|consen 338 ERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGN 410 (794)
T ss_pred ccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCc
Confidence 32111 111111124578889 88888754 68899998632211 123455677899999888888877888
Q ss_pred EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEc
Q 001160 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYS 1026 (1134)
Q Consensus 948 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s 1026 (1134)
|+++ ++.+..++.... ..+.+--.|.+|...+++.+++||. ++..++.+.. ....+.|+
T Consensus 411 vki~--knfke~ksi~~~------------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v------~~k~v~w~ 470 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPD------------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV------TSKHVYWS 470 (794)
T ss_pred eEEE--ecceeccccccc------------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEee------ccceeEEe
Confidence 9888 555533322111 1122333466777788999999998 7777777644 35678999
Q ss_pred cCCCEEEEEecCCcEEEEeC
Q 001160 1027 CDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
.+|.+++.++.|. .++...
T Consensus 471 d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 471 DNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred cCCCEEEEEecCc-eeEEEe
Confidence 9999988887554 444443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=282.78 Aligned_cols=296 Identities=17% Similarity=0.205 Sum_probs=247.2
Q ss_pred cccccceEEEEEecCC-cceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+|.+.|+.++..+.+ ..+++++.|..+.+|++... |.+.|.+++. +.+ | ...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--H-sH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--H-SHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--c-ceEecceE
Confidence 3499999999999874 56778888999999998653 2233444432 556 7 88999999
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC-ccc
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-HQN 925 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~ 925 (1134)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.|++|+.|.+|.+|++..+........ |.+
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999999999999 99999999999999999999999999999999 899999999999999999875544433332 378
Q ss_pred ceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC
Q 001160 926 RITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS 1002 (1134)
Q Consensus 926 ~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~ 1002 (1134)
-|.++.|+|+ ..+|+++|.|++|++||+.+.+ ......||. ..++.+++||||..+++ +.||.+.+||+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 8999999998 6899999999999999999977 344556666 57999999999999999 57999999999
Q ss_pred -CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCC
Q 001160 1003 -KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1003 -~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
+++.+..+ .|...|.+++|+|+...|+.+ .+..|+|||++++..+.++......+. ........++++|++ |
T Consensus 222 ~~~k~lysl----~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s-~~~~~~~clslaws~-d 294 (315)
T KOG0279|consen 222 NEGKNLYSL----EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPS-SKAGDPICLSLAWSA-D 294 (315)
T ss_pred cCCceeEec----cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccc-cccCCcEEEEEEEcC-C
Confidence 66665443 347899999999998777665 566799999999999999887654442 234457888999999 8
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 001160 1082 PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1082 ~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
|..|.+|..|+.|++|.+..
T Consensus 295 G~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 295 GQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEeeecCCcEEEEEeec
Confidence 99999999999999999753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=296.64 Aligned_cols=308 Identities=19% Similarity=0.288 Sum_probs=271.9
Q ss_pred eCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccc
Q 001160 321 AGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1134)
Q Consensus 321 s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1134)
.|.+.......|-..+....+...|..+|+.+-|+|+-. ++++++.|++|++||..+|+....
T Consensus 83 ~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~---------------- 145 (406)
T KOG0295|consen 83 DPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS---------------- 145 (406)
T ss_pred CCCcCccChhhcCCCCCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh----------------
Confidence 344433333334444445555556899999999999986 889999999999999999998664
Q ss_pred ccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
+.||.+.|..++|+..|++||+++.|-.+.+||.++. .++...+.+|...|.++.|-|.|. +|++++.|.+|+
T Consensus 146 ---LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik 218 (406)
T KOG0295|consen 146 ---LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIK 218 (406)
T ss_pred ---hhccccceeEEEEecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeeccccccee
Confidence 7899999999999999999999999999999999873 233336779999999999999998 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-------
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------- 553 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------- 553 (1134)
.|++.+|-++++|.+|...|..++. ..||.++++++.|.++++|-+.+.++...+..|..+|.+++|.|..
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 9999999999999999999999987 4567999999999999999999999999999999999999997732
Q ss_pred --------CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 554 --------TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 554 --------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
.++.+++ .|++|++||+.++.++.++.+|.. .|..++|+|.|+||+++.+|+++++||+.++++...
T Consensus 297 at~~~~~~~~l~s~S----rDktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGS----RDKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred ccCCCCCccEEEeec----ccceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 3566665 488999999999999999999988 999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+..|.+ -++++.|+.+..++++|+-|.++++|..
T Consensus 372 ~~ah~h--fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 372 LEAHEH--FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCcc--eeEEEecCCCCceEEeccccceeeeeec
Confidence 998766 6899999999999999999999999964
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=274.61 Aligned_cols=295 Identities=14% Similarity=0.235 Sum_probs=252.5
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe--eEEEecCccCc
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKR 589 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 589 (1134)
-+|++++.|.+||+|...++.+..++....+.|..+.+.|+++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 5669999999865 6899999988
Q ss_pred ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
.|.++.|.-+|+++++||+||+++|||++...+.+.++. ..+|+++..+|+...|++|..+|.|++||+.+. ....
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999666665553 358999999999999999999999999999766 1111
Q ss_pred hhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccce
Q 001160 670 MLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKS 749 (1134)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 749 (1134)
.+
T Consensus 161 ~l------------------------------------------------------------------------------ 162 (311)
T KOG0315|consen 161 EL------------------------------------------------------------------------------ 162 (311)
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred eccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCcc
Q 001160 750 WRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM 829 (1134)
Q Consensus 750 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 829 (1134)
.|+ ....|.++.+.|||..++++...|...+|++..... .+....
T Consensus 163 ----------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P 207 (311)
T KOG0315|consen 163 ----------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEP 207 (311)
T ss_pred ----------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceE
Confidence 111 235678999999999999999999999999864211 111111
Q ss_pred ccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCC-eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 830 TNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 830 ~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
...++. | .+.+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+..++||. |+.+|++|+.|+.++
T Consensus 208 ~~k~~a--h-~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~r 283 (311)
T KOG0315|consen 208 VHKFQA--H-NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTAR 283 (311)
T ss_pred hhheec--c-cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCcee
Confidence 111333 7 88999999999999999999 999999999998 77778899999999999999 999999999999999
Q ss_pred EEEcCCceEEEEecCcccceEEEEEe
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLAFS 933 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1134)
+|++..++.++...+|.....|++..
T Consensus 284 lW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 284 LWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999988888764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=288.65 Aligned_cols=339 Identities=18% Similarity=0.279 Sum_probs=290.8
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.|..|...|.+++.+|+.. +++||+.|....+|++.+|.....+.+|...|+++.|+.+ |.+|++|..+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999765 49999999999999999
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
..++.....+......+.-+.|+|.+..|++++. ||.+.+|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999998888889999999999999999874 88899999999999999999887 899999999999999999
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
.||+|++||+.++.++..+....+ ....++.++..+..++.|..++.+.+-+..+++ .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999999876553 367889999999999999999999888766651 1100000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+..+. ....+....|.++.
T Consensus 274 ---------------~~~~l~---------------------------------------------~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 274 ---------------TVPELK---------------------------------------------PSQEELDESVESIP 293 (399)
T ss_pred ---------------CCcccc---------------------------------------------ccchhhhhhhhhcc
Confidence 000000 00000033455566
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
++..-.+.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||...
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 666777889999 9999999999877766665 888899999987 468889999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 927 ITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
|.+++++|+.++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=287.52 Aligned_cols=295 Identities=18% Similarity=0.280 Sum_probs=266.2
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
.+.++.+.+. |.+.|.|+++-|.++ ++++|+.|++|.|||+.+|+...+ +.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence 3556666777 899999999999987 789999999999999999998765 7899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+++|+--.|+++++.|+.|+.||+...+.++ .+.||-..|.|++..|.-+ .|+||+.|.+++|||+++...+..+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999998887 6779999999999999988 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.||..+|..+.+.+.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++. ..|+-|+
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-----dnik~w~ 346 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-----DNIKQWK 346 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-----ccceecc
Confidence 9999999999998766 68999999999999999999999999999999999999999999999874 3499999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe---CCC---CCCCcceEEEccCCCEE
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---ADG---GLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~~~~s~d~~~l 647 (1134)
+..|..+..+.+|.. .+++++.+.|+ ++++|+++|.+.+||.+++...+... ..+ ....|.+.+|...|..|
T Consensus 347 ~p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 347 LPEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred CCccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 999999999999987 89999998876 88899999999999999987665542 111 23468899999999999
Q ss_pred EEEeCCCcEEEEECCC
Q 001160 648 AVTTSDNGIKILANSD 663 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1134)
++|..|.+|++|.-..
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999997543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=297.19 Aligned_cols=284 Identities=19% Similarity=0.307 Sum_probs=250.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
-+-+|..|.|.|+|++ |++|+..|.+.+|+..+-. -..++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEccCCCEEE
Confidence 4668999999999996 5689999999999964321 1124678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
+|+.+|.|++|+..-.... .+.+ |...|++++|+|+.. .++++++||+|+|||....+....+.||.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 9999999999998754322 3444 458999999999888 89999999999999999999888999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
.|+|.. .++++++.|..|++||.+++.++..+..|...|..+.|+|++++|++++. |..++++|+++.+.+.++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999987 79999999999999999999999999999999999999999999999985 778999999999999999
Q ss_pred cCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 584 SGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
++|.+ .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. +.+...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999966 566679999999999998767666664 3445689999999999999999999999999753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.91 Aligned_cols=329 Identities=13% Similarity=0.185 Sum_probs=276.5
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|+++|.+++.+|+.+++|+|+.|....+|++.++.... ++.+|+..|+++.|+.||. +||||+-+|.|+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEEE
Confidence 56799999999999999999999999999999999998554 7889999999999999999 999999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
..++.....+...-..+.-+.|+|.. ..|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+.++++..
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-- 210 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-- 210 (399)
T ss_pred cccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec--
Confidence 99999988887667778889999965 89999999999999999998888899999999999999999999999974
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC---------CCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG---------GLPA 634 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~ 634 (1134)
+++|++||+.++.++..+.........++.++..+..++.|+.++.+++-+..+++.+....... ....
T Consensus 211 --dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 211 --DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred --CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 88999999999999999987766678899999999999999999999999998888877665310 0111
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCC
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPD 714 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1134)
|-.+.++..-.+.|+|+-||+|.|||....
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-------------------------------------------------- 318 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAAS-------------------------------------------------- 318 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccc--------------------------------------------------
Confidence 222233333444555555555555554322
Q ss_pred CCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccC
Q 001160 715 RGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNA 794 (1134)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 794 (1134)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeE
Q 001160 795 VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKV 873 (1134)
Q Consensus 795 ~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~ 873 (1134)
.. +... .| +..|..+.|-+ ..+|+++. +|.|+.||..+|++
T Consensus 319 ----------~~-----------------------R~~c---~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 319 ----------TL-----------------------RHIC---EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------hh-----------------------heec---cC-CCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 00 0000 15 77788899988 56777776 99999999999999
Q ss_pred EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 874 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
+.++.+|...|.+++++| +.+++++++.|++.+|+++.
T Consensus 361 ~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 89999999999999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=290.29 Aligned_cols=281 Identities=18% Similarity=0.277 Sum_probs=254.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....|++++|+.+|. +||+|+.||.++||+...+ .+.+ +..|+++|.++.|+.+|.||+
T Consensus 234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yil 292 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYIL 292 (524)
T ss_pred ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEE
Confidence 346899999999997 8999999999999997754 3332 677999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++.|+++.+||..++.... .+.-|..+-..+.|-.+.+ +++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus 293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK 366 (524)
T ss_pred eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence 99999999999999987655 5556888878899987775 89999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC---------EEEEEeeCCCCCCcEEEEeCC
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT---------RLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~---------~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.|.+ .+|+++|.|+++++|..........+..|...|+.+.|+|.|. .+++++. +++|++||+.
T Consensus 367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~ 440 (524)
T KOG0273|consen 367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVE 440 (524)
T ss_pred ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEcc
Confidence 98866 8999999999999999998888999999999999999999653 5677764 8899999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.+.++.+|..|.. +|.+++|+|+|.++++|+.||.|.+|+..+++.++.+...+ .|..++|+.+|..|..+..|+.
T Consensus 441 ~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~ 516 (524)
T KOG0273|consen 441 SGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS 516 (524)
T ss_pred CCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence 9999999999988 99999999999999999999999999999999999987654 5899999999999999999999
Q ss_pred EEEEECC
Q 001160 656 IKILANS 662 (1134)
Q Consensus 656 i~iw~~~ 662 (1134)
+.+.|+.
T Consensus 517 vcvldlr 523 (524)
T KOG0273|consen 517 VCVLDLR 523 (524)
T ss_pred ceEEEec
Confidence 9998874
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=275.87 Aligned_cols=549 Identities=12% Similarity=0.128 Sum_probs=388.1
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecc-cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
-...|.++|||.+.+.||.+-.+|.|.||++..+=... ..+.++ ...|.+++|++.+ .|.+.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~---RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGG---RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCC---eEEeecCCceEEEEecc
Confidence 34579999999999999999999999999998854333 245554 4579999999666 48899999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee--EecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+++..+.+....+.|++++.+|.. ..++.|+.||.+..++........ .+....+++.+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999999877 789999999977777766555443 34455689999999999999999985
Q ss_pred CCCCcEEEEeCCCCeeEEEec-------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 564 EGESHLVEWNESEGAIKRTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
|+.|++||..++..+.... .....-|.++.|-.++ .+++|..-|+|.+||...+.+++....|.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 8899999999988776221 1122247778777554 789999999999999999999999887754 799
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCC
Q 001160 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
+++..+++.++++++.|+.|.-|...+++.. .+.
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~---------wv~------------------------------------- 283 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE---------WVI------------------------------------- 283 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc---------eee-------------------------------------
Confidence 9999999999999999999988887665220 000
Q ss_pred CCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCee
Q 001160 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 796 (1134)
. .+...|...|.+++..++ .+++++.|..+
T Consensus 284 ------------------------------------~------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l 313 (691)
T KOG2048|consen 284 ------------------------------------N------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTL 313 (691)
T ss_pred ------------------------------------e------------ccccCCcccceeeeeecc--eEEecceeeEE
Confidence 0 001226778889998887 68999999888
Q ss_pred EEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCe----
Q 001160 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK---- 872 (1134)
Q Consensus 797 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~---- 872 (1134)
.+-.....+. .... +...+ . .. .-+...|..++++.-.+..+.+|.+.+..
T Consensus 314 ~i~~s~~~~~-----------------~~h~-~~~~~----p-~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~ 368 (691)
T KOG2048|consen 314 AICSSREFKN-----------------MDHR-QKNLF----P-AS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGE 368 (691)
T ss_pred EEccccccCc-----------------hhhh-ccccc----c-cc--ceeecCccceEEEEeccccccceeccCcccccc
Confidence 8754321000 0000 00000 0 11 12334455556666568888999887652
Q ss_pred -----EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-----ecCcccceEEEEEecCCCEEEEE
Q 001160 873 -----VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-----LKGHQNRITGLAFSPTLNALVSS 942 (1134)
Q Consensus 873 -----~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-----l~~h~~~i~~l~~s~d~~~l~s~ 942 (1134)
+.+........|.|.+.|| +|++||.++- ..++||.+.....+.. .....-....+.|+-|++.++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 1222223445799999999 9999998754 4788888765322222 22233356788999999888888
Q ss_pred c-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCe
Q 001160 943 G-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1134)
Q Consensus 943 ~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v 1020 (1134)
+ .+..+.+.++++........+... .....++.++.||||+++|+ +..+.|.+|++++.....+.... ...|
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl--n~~v 520 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL--NIDV 520 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--Ccce
Confidence 7 677788888877553222111111 22367999999999999999 67899999999666655554332 5789
Q ss_pred EEEEEcc-CCCEEEEEecCCcEEEEeCCCcceeeecCCcc--cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1021 SSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA--YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1021 ~~v~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
++++|+| +-..|+.+..|+.|.-||++..+ +.++.... ..|....+-......+.|+|.+...++.= ..+-+++.
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~-l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~-~a~w~~~i 598 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN-LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVY-DAHWSCLI 598 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhh-hhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEE-cCcEEEEE
Confidence 9999995 55678889999999999995433 32222110 11222222233455778887665555543 33455665
Q ss_pred ecC
Q 001160 1098 EPS 1100 (1134)
Q Consensus 1098 ~~~ 1100 (1134)
|.+
T Consensus 599 d~~ 601 (691)
T KOG2048|consen 599 DFS 601 (691)
T ss_pred ecC
Confidence 543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=293.55 Aligned_cols=476 Identities=16% Similarity=0.220 Sum_probs=329.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+...+..|..++|+|...+++++-..|.|++||.+-+..+. .|..|.++|..++|+|++. ++++|++|..|++|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34466789999999999999999999999999999988777 7889999999999999999 999999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
..+.+++.++.||-+.|..+.|++.. .+++++|+|.+|++|+..+.+++..+.+|.+.|.|..|+|....+++++.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 99999999999999999999999877 79999999999999999999999999999999999999999999999986
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
|.+|++||+..-+....-.+.-........ ++.=+.|+.|-. ....+++| ...|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~----~~~dLfg~~DaV----------VK~VLEGH--DRGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQ----GNSDLFGQTDAV----------VKHVLEGH--DRGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccc----cchhhcCCcCee----------eeeeeccc--ccccceEEecCC
Confidence 778999998653322221211010111000 000011222222 23345555 458999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
-.++++|++|..|++|.++..
T Consensus 218 lpliVSG~DDRqVKlWrmnet----------------------------------------------------------- 238 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET----------------------------------------------------------- 238 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-----------------------------------------------------------
Confidence 999999999999999987543
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
+.|.+++. .+|.+.|.++.|.|....+++.+.|++++|||+..
T Consensus 239 ------------------------KaWEvDtc-------------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 239 ------------------------KAWEVDTC-------------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ------------------------cceeehhh-------------hcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 22333321 34889999999999999999999999999999753
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCc
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA 883 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~ 883 (1134)
.. .+...-.. .+..+.++.+|..+++|.|-|+.+.||.++.-.+
T Consensus 282 Rt----------------------~v~tfrre----ndRFW~laahP~lNLfAAgHDsGm~VFkleRErp---------- 325 (1202)
T KOG0292|consen 282 RT----------------------SVQTFRRE----NDRFWILAAHPELNLFAAGHDSGMIVFKLERERP---------- 325 (1202)
T ss_pred cc----------------------ceeeeecc----CCeEEEEEecCCcceeeeecCCceEEEEEcccCc----------
Confidence 21 11111222 6788999999999999999998888888764322
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecCc---ccceEEEEEecCCCE-EEEEcCC-CcEEEEeCCCc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGH---QNRITGLAFSPTLNA-LVSSGAD-AQLCMWSIDKW 956 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h---~~~i~~l~~s~d~~~-l~s~~~D-~~i~iWd~~~~ 956 (1134)
+.+.+ ++ .|... .|..|+-+|+.+.+- +..++.- ..++.++.++|.... |++...| +.--++.+...
T Consensus 326 --a~~v~--~n-~LfYv-kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 326 --AYAVN--GN-GLFYV-KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred --eEEEc--CC-EEEEE-ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 22333 23 33333 388999999988543 3445433 257889999997554 4443333 34444444332
Q ss_pred ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
....... ..... ..-....|-..+++.+.. ++.++.+=+++.+..+.+.. ...+..|-+..+|.+|+.
T Consensus 400 ~~~~~~~---~~~~k---~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~----~~~~~~IF~ag~g~lll~- 468 (1202)
T KOG0292|consen 400 SDGVSDG---KDVKK---GTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL----PESTDDIFYAGTGNLLLR- 468 (1202)
T ss_pred ccccCCc---hhhhc---CCCCceEEEEecceEEEEecCcceEEecccchhhhcccC----cccccceeeccCccEEEE-
Confidence 1100000 00000 111222333333333332 34555555553333333322 123445555556665544
Q ss_pred ecCCcEEEEeCCCcceeeecC
Q 001160 1036 FCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
....|.+||+..++.+..+.
T Consensus 469 -~~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 469 -SPDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred -cCCeEEEEEeecceEEEEEe
Confidence 24467777777776666655
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=261.79 Aligned_cols=292 Identities=20% Similarity=0.312 Sum_probs=238.3
Q ss_pred EEEEec-CCCCeeEEEEecC-CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 339 VVRTLN-QGSNVMSMDFHPQ-QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spd-g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
.++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence 345555 8899999999999 76 899999999999999885332111 01113479999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eeeEEe
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTF 493 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~~~ 493 (1134)
+|.|++||+|+.|.++.||.-..+ .......++||...|.|++|+++|. +||||+.|++|-||.+..+ +++..+
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL 146 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL 146 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence 999999999999999999997754 3455668999999999999999999 9999999999999998744 467789
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC---CCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+.|...|..+.|+|.. .+|+++|.|++|++|+-.. -.+...+.+|...|.+++|++.|..|++++. |++++
T Consensus 147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~ 220 (312)
T KOG0645|consen 147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS 220 (312)
T ss_pred ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence 9999999999999988 7999999999999998763 2346788899999999999999999999974 88999
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-----eCCCCCCCcceEEEccC-C
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-----DADGGLPASPRLRFNKE-G 644 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~s~d-~ 644 (1134)
||... ..+...+...+..+.|. ...|++++.|+.|++|.-...-.-..+ ..+.|...|++++|.|. .
T Consensus 221 Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 221 IWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 99865 23444444478889998 458999999999999987643111111 12233458999999994 7
Q ss_pred CEEEEEeCCCcEEEEECC
Q 001160 645 SLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1134)
.+|+++++||.+++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 799999999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=270.39 Aligned_cols=285 Identities=18% Similarity=0.245 Sum_probs=249.0
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.|++.|+.+.|+|+|. ++|+|+.|..|.+|++.....-. ..+++|++.|..+.|.+|++.|
T Consensus 45 gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred CCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCCEE
Confidence 3899999999999997 89999999999999976433211 1367999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++++.|.+++.||+++|+..+ .+++|..-|+++.-+.-|.. ++.+|+.|+++++||+++...++++. ....++++
T Consensus 106 ~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 106 LSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred EEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999999999999998777 67789999999996666665 78899999999999999998888875 56678999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----Cee
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAI 579 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~ 579 (1134)
.|.-. +..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. |.++++||.+. .++
T Consensus 181 ~f~d~--s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 181 GFKDT--SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred Eeccc--ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCce
Confidence 98554 478999999999999999999999999999999999999999999999876 78899999974 345
Q ss_pred EEEecCccCc---ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 580 KRTYSGFRKR---SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 580 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
+..+.++... ....++|+|++..+.+|+.|+.+++||......+..+++|.+ .|++++|+|...+|.+++.|.+|
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCcee
Confidence 7777776431 345688999999999999999999999999899998887754 79999999999999999999998
Q ss_pred EEEE
Q 001160 657 KILA 660 (1134)
Q Consensus 657 ~iw~ 660 (1134)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=274.57 Aligned_cols=486 Identities=15% Similarity=0.203 Sum_probs=356.0
Q ss_pred hhhhhhcccCCcceeEeeCCCCCCccc---------------cCccccceEEEEec-CCCCeeEEEEecC--CCeEEEE-
Q 001160 304 DHLMKRIRTGQSDEVSFAGVAHTPNVY---------------SQDDLTKTVVRTLN-QGSNVMSMDFHPQ--QQTILLV- 364 (1134)
Q Consensus 304 ~~~~~~~~~~~~~~v~~s~~g~~~~~~---------------~~~~~~~~~~~~l~-h~~~V~~v~~spd--g~~llas- 364 (1134)
.+--...+...+.|++..||--.++.. .||..+..-+..+. -...|+|++||+- |..+++.
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 334445556688899998865544432 24444444455555 5678999999984 3333332
Q ss_pred EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 001160 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444 (1134)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~ 444 (1134)
-+.+.-+.+||.+.+..... .+.....|..+.|+|.+.-|+.....+.+.+|+..++...+
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k 236 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK 236 (626)
T ss_pred CCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE
Confidence 13456789999998776543 33456778999999977777777788899999999988877
Q ss_pred eeeEEeccc-CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001160 445 QHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 445 ~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
....++.+. .-|.|++|.++|+ ++||..+|.|.||+..+.+..+....|.+.|.+++...+ ..|++|+.|+.|
T Consensus 237 ~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki 310 (626)
T KOG2106|consen 237 RQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKI 310 (626)
T ss_pred EeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceE
Confidence 666666544 4699999999998 899999999999999888877777799999999998665 367779999999
Q ss_pred EEEEccCCCcee--EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 524 KAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 524 ~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
..|| .+-+... .++...+.|..++-...+ ++.+.. .+.|..=.++++-. ....+|.+ ....++.+|+.+
T Consensus 311 ~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~~ 381 (626)
T KOG2106|consen 311 ILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSKN 381 (626)
T ss_pred Eecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCChh
Confidence 9999 4333333 344455677776643333 555543 33343333443332 33456666 788899999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCC
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1134)
.+++++.|+.+++|+ ..++..+.... .++.++.|+|.| .+|.|+..|...+.|.++. .++.. |.
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~---~~------ 445 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTI---HT------ 445 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEE---Ee------
Confidence 999999999999999 44444443322 367899999999 9999999999999998764 22111 10
Q ss_pred CCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccce
Q 001160 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1134)
T Consensus 446 -------------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 446 -------------------------------------------------------------------------------- 445 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCC
Q 001160 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1134)
Q Consensus 762 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~ 841 (1134)
...++..+.|+|+|.+|+.++.|+.|.+|.+..+ |..+...-. .| ..
T Consensus 446 ---------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~---------------------g~~y~r~~k--~~-gs 492 (626)
T KOG2106|consen 446 ---------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN---------------------GRKYSRVGK--CS-GS 492 (626)
T ss_pred ---------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC---------------------CcEEEEeee--ec-Cc
Confidence 2356789999999999999999999999987532 222221111 14 68
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEE--------------e----cCCCCceEEEEEcCCCCcEEEEEeC
Q 001160 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM--------------F----MSPPPAATFLAFHPQDNNIIAIGME 902 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l~~s~~~~~~lasg~~ 902 (1134)
+|+.+.||+|++++.+-+ |-.|..|.....+.+.. | ..+...|..++-+. +.+++|+|.+
T Consensus 493 ~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd 571 (626)
T KOG2106|consen 493 PITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDD 571 (626)
T ss_pred eeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhcccc
Confidence 899999999999999998 88999995433221111 1 12445677788888 8899999999
Q ss_pred CCcEEEEEcCCce---EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 903 DSSVQIYNVRVDE---VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 903 dg~i~iwd~~~~~---~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
.|.|++|...--+ ....+.+|++-|++++|.-+..+|++.+.|..|..|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999876433 34567899999999999999999999999999999986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=276.35 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=266.4
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
...+.+.+|..+|+.+.++|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC----cc
Confidence 4456777899999999999976 78899999999999999999999999999999999999999999999985 55
Q ss_pred cEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCE
Q 001160 568 HLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 568 ~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 646 (1134)
.+.+||..+ .++++.+.+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|.. .|..++.+.||.+
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti 249 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTI 249 (406)
T ss_pred chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeE
Confidence 699999987 667788888877 899999999999999999999999999999999999998855 8899999999999
Q ss_pred EEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccC
Q 001160 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1134)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1134)
+|+++.|.++++|-+.++ +....++.
T Consensus 250 ~As~s~dqtl~vW~~~t~-~~k~~lR~----------------------------------------------------- 275 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATK-QCKAELRE----------------------------------------------------- 275 (406)
T ss_pred EEecCCCceEEEEEeccc-hhhhhhhc-----------------------------------------------------
Confidence 999999999999999888 55555544
Q ss_pred CCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccC
Q 001160 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1134)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 806 (1134)
|+..|.+++|.|...+ ....+
T Consensus 276 --------------------------------------------hEh~vEci~wap~~~~--~~i~~------------- 296 (406)
T KOG0295|consen 276 --------------------------------------------HEHPVECIAWAPESSY--PSISE------------- 296 (406)
T ss_pred --------------------------------------------cccceEEEEecccccC--cchhh-------------
Confidence 4455667777665431 00000
Q ss_pred CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceE
Q 001160 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT 885 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~ 885 (1134)
.. . ... .+.++.+++ |++|++||+.++.++.++.+|.+.|.
T Consensus 297 ---------------------------at--~-~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 297 ---------------------------AT--G-STN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred ---------------------------cc--C-CCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 00 0 111 567899999 99999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 886 FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
.++|+| +|+||++..+|+++++||+.++++...+..|..-|+++.|..+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 9999999999999999999999999999999999999999999999999999999999964
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=267.86 Aligned_cols=252 Identities=17% Similarity=0.288 Sum_probs=219.6
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..... ....+++|.+.|..+.|.+|+. .|++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 34789999999999999999999999999999999765432 3336779999999999999999 8999999999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
||+++|++++.+++|...|+++.....+ -.++.+++.|+++++||++..+....+. ...+++++.|...+..+.+++-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCccccC-CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 9999999999999999999999844332 2678889999999999999877766553 3457899999999999999987
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC----CeeEEEEeCCCCCC--Cc
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN----MNMLTTVDADGGLP--AS 635 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 635 (1134)
|+.|++||++.+.....+.||.+ +|+.+..+++|.++.+-+.|.++++||++. .+++..+.++.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 56699999999999999999999 999999999999999999999999999874 34577777665433 34
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..++|+|++..+.+|+.|..+++||....
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc
Confidence 56789999999999999999999997654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=276.00 Aligned_cols=246 Identities=16% Similarity=0.284 Sum_probs=229.1
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
++.+|.+.|.|+++-|...++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 588999999999999999999999999999999999997554 8889999999999999888 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
|++..+.++.+.||-..|.+++.+|.- +.|++|+.|.++|+||+++...+..+.+|...|..+.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999999987 79999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
|++|++||++.|+...++..|.. .+.+++.+|....+++++.| .|+-|++..+..+..+.+|. ..|++++...
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeecc
Confidence 88899999999999999998887 99999999999999998877 49999999999998877664 4688898888
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001160 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|| ++++|+++|.+.+||.+++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 7788999999999999988
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=310.76 Aligned_cols=286 Identities=20% Similarity=0.358 Sum_probs=251.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc--ccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+...|.|+.|||+|+ .+++++.|+.+++|+..+++ .+.. +.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999998 58899999999999997666 3221 5789999999999999999
Q ss_pred EEEEeCCCeEEEEEc-CCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTY-NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|.
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 3334444 8889999999999999997 899999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCC--cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
+++|++++ .+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99997754 899999999999999999988 3445544444 5999999999999999985 778999999999
Q ss_pred eeEEEecCccCc--ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe--CC
Q 001160 578 AIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT--SD 653 (1134)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~d 653 (1134)
..+..+.+|... .+.+..+++.+.++++|+.|+.|++||..++..+..+.+|. ...+..+++++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34455567889999999999999999999999999998885 45789999999999999998 68
Q ss_pred CcEEEEECC
Q 001160 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=303.27 Aligned_cols=247 Identities=17% Similarity=0.345 Sum_probs=228.0
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------c--------------------cceeeEEecccCCeeE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--------E--------------------LRQHLEIDAHVGGVND 458 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~--------~--------------------~~~~~~~~~h~~~v~~ 458 (1134)
....++|..||+|++.||.|..|..|++|.+...+ . -....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34469999999999999999999999999987421 0 0123457899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 538 (1134)
+.|+|+.+ +|++++.|++|++|.+.+..++-.++||..+|+.+.|+|.+ -+++|+|.|++.++|..+...+...+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 89999999999999999999999999999999999998764 999999999999999999999999999
Q ss_pred CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001160 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
+|-..|.|+.|+|+..|+++++. |.++++||..+|..++.|.||.. +|.+++|+|+|.+|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999975 88899999999999999999988 99999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++++..+..| ...|.++.|+.||..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988 558999999999999999999999999998654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-29 Score=266.63 Aligned_cols=503 Identities=15% Similarity=0.179 Sum_probs=363.0
Q ss_pred ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEcc
Q 001160 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 452 h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~ 529 (1134)
-..+|.++||+.+.+ .||.+-.||.|.||++..+=. ...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecc
Confidence 356799999999998 699999999999999987543 3455554 46899999983 3799999999999999999
Q ss_pred CCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc-cCcceEEEEEeCCCCEEEEEeC
Q 001160 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
+.+.+..+...++.|.+++.+|.+..++.++. +|.+..++...++......-. ..+.+.+++|+|++..+++|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 99999999999999999999999999998874 677888888777765443222 2348999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeC-----CC-CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 609 EFQIKFWDMDNMNMLTTVDA-----DG-GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
||.|++||+.++..+..... .. ...-|+++.|-.++ .|++|.+.|+|.+||...+ .+.+....
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~~~--------- 243 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSHSC--------- 243 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhhhh---------
Confidence 99999999999887763321 11 22346677777655 6889999999999999888 55544432
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 244 -------------------------------------------------------------------------------- 243 (691)
T KOG2048|consen 244 -------------------------------------------------------------------------------- 243 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCc
Q 001160 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~ 842 (1134)
|...|.+++.++++.++++++-|+.+..|...+.+. -|-.. ... ..| ...
T Consensus 244 --------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~------~~r--~~h-~hd 293 (691)
T KOG2048|consen 244 --------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVIN------SRR--DLH-AHD 293 (691)
T ss_pred --------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeee------ccc--cCC-ccc
Confidence 556788999999999999999999998887654221 02111 111 226 889
Q ss_pred eEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEE-EEEcCCCCcEEEEEeCCCcEEEEEcCCce-----
Q 001160 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATF-LAFHPQDNNIIAIGMEDSSVQIYNVRVDE----- 915 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~lasg~~dg~i~iwd~~~~~----- 915 (1134)
+.+++..++ .+.+|+ |.++.+-.....+..........+-.+ +...| .++|..--.+..+.+|.+-+.-
T Consensus 294 vrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 294 VRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred ceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCccccccc
Confidence 999999888 777777 888877665542221111100111112 22233 3445545557778888776541
Q ss_pred ----EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 916 ----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 916 ----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
+.+-...-...|.+-+.||||++++.+. -...+||.++....++...+....... ...+.+.|+-|+..++.
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~ 445 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFL 445 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEE
Confidence 1222222335689999999999988765 345788888764433333322222111 35788999999988777
Q ss_pred E--ECCeEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccccc
Q 001160 992 V--HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1134)
Q Consensus 992 ~--~d~~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1134)
. ....+.++++ +.+.+..+... +-...|..+..|+||+|+|+.+.+|.|.+|++.+++.......-
T Consensus 446 ~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl-------- 516 (691)
T KOG2048|consen 446 VSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL-------- 516 (691)
T ss_pred EecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc--------
Confidence 4 4567777777 44444444333 33678999999999999999999999999999998766544211
Q ss_pred CCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1067 ~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+++++++|.+-+.|+.+..|+.+.-+|+...+
T Consensus 517 --n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 517 --NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --CcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 15667888998787899999999999999994433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=273.92 Aligned_cols=295 Identities=17% Similarity=0.283 Sum_probs=238.2
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
+++..|.+.|.-+.||++|+|||+++.|.+..+|++.....+....++.+|..+|..+.||||.+ ++++|+.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 35788999999999999999999999999999999987777777789999999999999999999 8999999999999
Q ss_pred EECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 482 WDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 482 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
||+.+|...+.+. +|...+.+++|.|++ ..+++|+.|+++..||++
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlD------------------------------- 342 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLD------------------------------- 342 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCC-------------------------------
Confidence 9999999887664 234566666666543 566666666666666553
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
|..+...++-....|.++++++||+++++.+.|..|++++.++......+..+ .+|+++..
T Consensus 343 ----------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~i 403 (519)
T KOG0293|consen 343 ----------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSI 403 (519)
T ss_pred ----------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEE
Confidence 22222333333336888999999999999999999999999877666555433 37899999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001160 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1134)
|.||+++++.-.+..+++||++.. .+++.+.||...
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~------------------------------------------- 439 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG------------------------------------------- 439 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc-------------------------------------------
Confidence 999999999999999999999966 667666665321
Q ss_pred ccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEee
Q 001160 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1134)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~ 800 (1134)
++++-.+
T Consensus 440 ----------------------------------------------------------------~fiIrSC--------- 446 (519)
T KOG0293|consen 440 ----------------------------------------------------------------HFIIRSC--------- 446 (519)
T ss_pred ----------------------------------------------------------------ceEEEec---------
Confidence 1111000
Q ss_pred cccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecC
Q 001160 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1134)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~ 879 (1134)
+.+ .|..++|+|+ |++|+||+..+++++..+.|
T Consensus 447 --------------------------------Fgg--------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 447 --------------------------------FGG--------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred --------------------------------cCC--------------CCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 111 2567999999 99999999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
|...|+|++|+|.+..++|+|++||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999999999998653
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=251.59 Aligned_cols=288 Identities=14% Similarity=0.218 Sum_probs=247.3
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.+..+.+. +.++|.++.|+-||+ +..+++.|.+|++|+...|.++.+ +.+|...|..++
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~ 66 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAA 66 (307)
T ss_pred chhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeecc
Confidence 33455555 889999999999999 566777899999999999998876 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC--CeeeEEe
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--GRKQYTF 493 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--~~~~~~~ 493 (1134)
.+.|...+++|+.|..+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||-++ .++++.+
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchh
Confidence 99999999999999999999999998877 7889999999999999998 999999999999999875 4678888
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
......|.++.+.. ..+++|+.||++|.||++.++..... .+++|++++|++|++..++++. ++++++.|
T Consensus 142 dea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLlD 211 (307)
T KOG0316|consen 142 DEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLLD 211 (307)
T ss_pred hhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeecc
Confidence 88888999998743 78999999999999999977655443 4568999999999999998876 78899999
Q ss_pred CCCCeeEEEecCccCcce-EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 574 ESEGAIKRTYSGFRKRSL-GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
-.+|+++..+++|..... ..++++.....+++|++||.|++||+.....+..+..++. ..+..++++|.-..++++..
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEecC
Confidence 999999999999976432 2456777778999999999999999999999999887654 35789999997777776654
Q ss_pred CCcEEEEEC
Q 001160 653 DNGIKILAN 661 (1134)
Q Consensus 653 dg~i~iw~~ 661 (1134)
. .+..|.-
T Consensus 291 ~-~~~~~~~ 298 (307)
T KOG0316|consen 291 H-GDLFWYQ 298 (307)
T ss_pred C-ceeceee
Confidence 4 4556643
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=278.15 Aligned_cols=241 Identities=17% Similarity=0.261 Sum_probs=215.2
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
-+.+|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+++|..+|.++.|+++|. +++||+.+|.|++|+..-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 34579999999999999999999999999975422 1124568999999999999999 899999999999999654
Q ss_pred CeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 487 GRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 487 ~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
. .++.+++|. ..|.+++|+|.. ..+++++.||+|+|||....+....+.+|+-.|.++.|+|.-..+++++.
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk---- 242 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK---- 242 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----
Confidence 4 455566655 899999999954 79999999999999999999998899999999999999999999999974
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EG 644 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~ 644 (1134)
|..|++||.++|.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+.++.+|. ..+.+++|+| ..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch--hhheeeccccccc
Confidence 66899999999999999999998 99999999999999999999999999999988888888774 4799999999 67
Q ss_pred CEEEEEeCCCcEEEEECC
Q 001160 645 SLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~ 662 (1134)
.+|.+|+.||.|..|.+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred cceeeccCCCceEEEecc
Confidence 789999999999999876
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=273.81 Aligned_cols=651 Identities=16% Similarity=0.199 Sum_probs=359.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
-+..+. |.+.|+.+.|||-...|||+|+.|..|+||.+..|.... ...+..++.+..-.|-|+.|+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fH 137 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFH 137 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecc
Confidence 455555 999999999999887799999999999999998553221 011222345556679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h 496 (1134)
|...-|...+..|+++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++...+|
T Consensus 138 pTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 138 PTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred cCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccc
Confidence 987767777789999999999987665 7889999999999999999 999999999999999874 6788888888
Q ss_pred CCCe-EEEEeeccCCccEEEEEecC----CeEEEEEccCCCce-eEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 497 EAPV-YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSR-VDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 497 ~~~v-~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+.- ..+.|.. +-..|++.+.+ ..|++||.+..... ..+... ...|.---|.||.++++.++. ++.++
T Consensus 213 ~~~rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGK---G~~~l 287 (1012)
T KOG1445|consen 213 GGMRDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGK---GTNKL 287 (1012)
T ss_pred ccchhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecC---CcceE
Confidence 7642 2344533 33577777655 46999998865442 233222 224555668999999988773 67788
Q ss_pred EEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEEEEe-CCCeE----------------------------------
Q 001160 570 VEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQI---------------------------------- 612 (1134)
Q Consensus 570 ~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i---------------------------------- 612 (1134)
..+.+...++.- .+..-........++-|....-+-.+ -+..+
T Consensus 288 ~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 288 FMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 888876544211 11110000001111111110000000 00000
Q ss_pred -----EEEECCCCeeEEEEe------CCCC----------------CCCcceEEEccCCCEEEEEeCCC-----------
Q 001160 613 -----KFWDMDNMNMLTTVD------ADGG----------------LPASPRLRFNKEGSLLAVTTSDN----------- 654 (1134)
Q Consensus 613 -----~iwd~~~~~~~~~~~------~~~~----------------~~~v~~~~~s~d~~~l~~~~~dg----------- 654 (1134)
.-|=-.+.+.++... .|+. ...|......|...-=.....++
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 001000111111110 0000 00000000000000000000000
Q ss_pred ---cEEEEECC-----Cc----hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 655 ---GIKILANS-----DG----VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 655 ---~i~iw~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
.+|-.+.. ++ ..-...-++....+......+++-.++.-.++ ..++++.-.+.|.-.+ ..+....
T Consensus 448 ~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~pl--t~~~s~~s~~~P~~~k-svPe~~~ 524 (1012)
T KOG1445|consen 448 KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPL--TDSVSTPSVVGPAFGK-SVPEQPP 524 (1012)
T ss_pred cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCccc--ccccccccccCccccc-cCCCCCC
Confidence 00000000 00 00000000111111111111110000000000 0000000001111000 0000000
Q ss_pred Cc----cCCCCcccccccccccccccCccceeccCCCCCccc------eeE--eecCCcccccceEEEEEecCCcceEE-
Q 001160 723 SS----LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ------IKA--LRLPDSIAASKVVRLIYTNSGLSLLA- 789 (1134)
Q Consensus 723 ~~----~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~------~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~- 789 (1134)
.. +...........-.-..+--|.+.-|..-.+....+ ++. ..+|+ .+--|..+..++++
T Consensus 525 ~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~Pg-------EsnGfcan~~rvAVP 597 (1012)
T KOG1445|consen 525 VNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPG-------ESNGFCANNKRVAVP 597 (1012)
T ss_pred cccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCC-------ccCceeeccceEEEE
Confidence 00 000000000000000000001221121111111100 000 01111 11223344444433
Q ss_pred -eeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEE
Q 001160 790 -LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLF 866 (1134)
Q Consensus 790 -~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vw 866 (1134)
.+..|.|.||+++.....|+|....- .. ...|+.+.|.| |...||++. ||.|++|
T Consensus 598 L~g~gG~iai~el~~PGrLPDgv~p~l---------------------~N-gt~vtDl~WdPFD~~rLAVa~ddg~i~lW 655 (1012)
T KOG1445|consen 598 LAGSGGVIAIYELNEPGRLPDGVMPGL---------------------FN-GTLVTDLHWDPFDDERLAVATDDGQINLW 655 (1012)
T ss_pred ecCCCceEEEEEcCCCCCCCccccccc---------------------cc-CceeeecccCCCChHHeeecccCceEEEE
Confidence 45579999999987777666654322 12 67799999999 778888888 8999999
Q ss_pred ECCCC-------eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEE
Q 001160 867 NMMTF-------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 867 d~~~~-------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 939 (1134)
.+..+ ..-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+
T Consensus 656 r~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~ 735 (1012)
T KOG1445|consen 656 RLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI 735 (1012)
T ss_pred EeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce
Confidence 98754 34456788999999999999777899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EE----CCeEEEEeCCCcceeccCCC-
Q 001160 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH----ESQISVYDSKLECSRSWSPK- 1013 (1134)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~----d~~v~vwd~~~~~~~~~~~~- 1013 (1134)
||.+.||+|++|+-.+++.. +..-.+... ..-..+.|.-||+++++ |. .++|.+||...-..+.+...
T Consensus 736 AtVcKDg~~rVy~Prs~e~p----v~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 736 ATVCKDGTLRVYEPRSREQP----VYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred eeeecCceEEEeCCCCCCCc----cccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence 99999999999998886632 222222221 23457889999999988 43 46799999822111111000
Q ss_pred CCCCCCeEEEEEccCCC-EEEEEecCCcEEEEeCCCcc
Q 001160 1014 DALPAPISSAIYSCDGL-LVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~-~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
-.....+.--.+.+|.. ++++|-.|..|.+|.+-...
T Consensus 810 lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 810 LDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred ecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 00011122223455654 57788899999999976543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=247.63 Aligned_cols=243 Identities=16% Similarity=0.298 Sum_probs=208.0
Q ss_pred ccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEE-ecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 403 LLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.+++|.+.|..++|+|- |..||+|+.|+.|++|+...+........+ .+|+..|.+++|+|.|+ +|++++.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 37789999999999998 999999999999999999865444433333 37999999999999999 999999999999
Q ss_pred EEECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC---ceeEecCCCCcEEEEEECCCCCE
Q 001160 481 VWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG---SRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 481 iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
||.-..+ +++.++.||...|.+++|+.++ .+|++++.|+.|-+|.+.... +...+..|...|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9985543 6788999999999999997755 899999999999999988544 34578899999999999999999
Q ss_pred EEEEeeCCCCCCcEEEEeCC---CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNES---EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
|+++++ |.+|++|+-. ...+++++.+|.. .|.+++|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999997 7789999876 3468899999988 9999999999999999999999999986521 21 1223
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
..++.++|. ...|++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 468889998 4589999999999999754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=301.11 Aligned_cols=291 Identities=26% Similarity=0.432 Sum_probs=244.8
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...|.++.|+++|+.+++++.++.+++|+...... .... .+.+ | ...|.+++|+|
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l~~--h-~~~v~~~~fs~ 213 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-ELSG--H-TRGVSDVAFSP 213 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cccc--c-ccceeeeEECC
Confidence 467889999999999999999999999998632110 0111 1233 7 89999999999
Q ss_pred CCCEEEEEe-CCeEEEEEC-CCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNM-MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999 999999999 66699999999999999999999 779999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC-CCcc
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLEC 1006 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~ 1006 (1134)
+++|++|+++|++++.|+.|++||+.++... +.....++.... .++.++|+|++++++++ .|+.+++||+ .+.+
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9999999999999999999999999998843 334455555433 68999999999999995 5779999999 6777
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...+..+..-...+.+..++++++++++|+.|+.|++|++.++..+..+..+. ......+.++| ..++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~~~~~~~~~~~-~~~~~~ 438 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------KAAVSDLSSHP-TENLIA 438 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------CCceeccccCC-CcCeee
Confidence 77765543111255566678899999999999999999999999998887662 24456788888 678999
Q ss_pred EEe--CCCcEEEEecC
Q 001160 1087 LGM--SDGAVHVVEPS 1100 (1134)
Q Consensus 1087 s~~--~Dg~v~vW~~~ 1100 (1134)
+++ .|+.+++|...
T Consensus 439 s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 439 SSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecCcCCCceEEEecCC
Confidence 988 78999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.48 Aligned_cols=271 Identities=22% Similarity=0.331 Sum_probs=234.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+|+.+..+ .+++|..|++|+|||.++..++.. +.||++.|.|+.| |.+.|++
T Consensus 197 skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rviis 252 (499)
T KOG0281|consen 197 SKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIVS 252 (499)
T ss_pred CCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEEe
Confidence 468999999533 478999999999999998887764 8899999999999 6679999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCCCCeEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYS 502 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~ 502 (1134)
|+.|.+|+|||+++++.+. ++-+|...|..+.|+.. +++|++.|.+|.+||+..... .+.+.||...|+.
T Consensus 253 GSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred cCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999999887 77799999999999743 899999999999999987653 3567899999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.|+. +++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .|+++++|+. |.+|++||+..|.+++.
T Consensus 326 Vdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRV 395 (499)
T ss_pred ecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHH
Confidence 98843 79999999999999999999999999999999988876 4678888875 88899999999999999
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE---------EEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML---------TTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.||.+ -|.|+.|. .+.+++|+.||+|++||+..+... ..+.. +.+.|..+.|. ...+++++.|
T Consensus 396 LeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~--hsgRVFrLQFD--~fqIvsssHd 468 (499)
T KOG0281|consen 396 LEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE--HSGRVFRLQFD--EFQIISSSHD 468 (499)
T ss_pred HhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhh--ccceeEEEeec--ceEEEeccCC
Confidence 999998 89999996 578999999999999999876432 22222 33467777774 5678899999
Q ss_pred CcEEEEECCCc
Q 001160 654 NGIKILANSDG 664 (1134)
Q Consensus 654 g~i~iw~~~~~ 664 (1134)
.+|.|||..++
T Consensus 469 dtILiWdFl~~ 479 (499)
T KOG0281|consen 469 DTILIWDFLNG 479 (499)
T ss_pred CeEEEEEcCCC
Confidence 99999999887
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=283.38 Aligned_cols=282 Identities=24% Similarity=0.408 Sum_probs=251.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|++++|+|+++ ++++|+.||.|.+|++.+++.... +..|...+.++.|+|++++++
T Consensus 8 h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 8 HTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred cCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEEE
Confidence 889999999999998 678888899999999998764432 456888999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++.+|.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.|.+||+.+++....+..|...|.+++
T Consensus 68 ~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 142 (289)
T cd00200 68 SGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142 (289)
T ss_pred EEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence 99999999999999875554 6678998999999999977 788888899999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|++.+ .++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+++||+.+++.+..+.
T Consensus 143 ~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 143 FSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EcCcC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchh
Confidence 98863 78888888999999999988888888888889999999999999998874 7789999999999998887
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+.. .+.++.|+|++.++++++.+|.|++|++.+++....+..+ ...+.+++|++++.+|++++.||.+++|+
T Consensus 217 ~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 217 GHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7776 8999999999888888888999999999998888888755 34799999999999999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=279.05 Aligned_cols=292 Identities=19% Similarity=0.343 Sum_probs=249.9
Q ss_pred eeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCe
Q 001160 445 QHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1134)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1134)
....+.+|...|+++.|.| .+. +|++++.|+.|+||++-. +++++++.+|..+|.+++|+.. |..+++++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc--CCeeeeeeccee
Confidence 3447889999999999999 666 899999999999999987 9999999999999999999765 489999999999
Q ss_pred EEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
|++||++++++...+.. +..++|+.|.|++ +.+++|+. ++.|+.||+++++.++.+..|-+ .|..+.|-++|.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCc
Confidence 99999999999887763 4578999999999 66666664 78899999999999999998887 899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhh--hhhhcCCccccc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRL--LRMLEGRAMDKN 679 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~ 679 (1134)
++++.++|++++||+...+-++..+.... .....++..+|++++++.-+.|+.|.++.+....+. .+.+++|.
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~---- 430 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS---- 430 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee----
Confidence 99999999999999999887776554332 235789999999999999999999999986433110 11111110
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
-
T Consensus 431 ------------------------------------------------------------------------------v- 431 (503)
T KOG0282|consen 431 ------------------------------------------------------------------------------V- 431 (503)
T ss_pred ------------------------------------------------------------------------------c-
Confidence 1
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
.+.-..+.|||||++|++|+ +|.+.+||.++.+.+..+++|+..+..+.|+|.....+|+++.||.|++||
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 33446689999999999998 999999999999999999999999999999998888999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=280.48 Aligned_cols=294 Identities=17% Similarity=0.262 Sum_probs=250.0
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccCCcCeE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
.|...+.++. |...|+++.|.|-.-.||++|+.|+.|+||++.. ++++++ +.+|..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence 3666777887 9999999999994435999999999999999987 677665 789999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
.++|+++|..+.+++.|+.+++||+++|+++. .+. -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~---~f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLS---RFH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEE---EEe-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999998765 332 3456899999999955 788999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
+..|-+.|..+.|.+.+ .++++.+.|+++++|+.+..-... ..........++..+|+++++++-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999997755 899999999999999998766544 33344557789999999999998765 777999
Q ss_pred EeCCCC---eeEEEecCccCc-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCE
Q 001160 572 WNESEG---AIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSL 646 (1134)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 646 (1134)
+.+... ...+.|.+|... .-..+.|||||.+|++|+.||.+.+||.++-+.+..+..|. ..+..+.|+| ....
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcce
Confidence 886532 234567777542 23458899999999999999999999999999999999874 4789999999 5568
Q ss_pred EEEEeCCCcEEEEE
Q 001160 647 LAVTTSDNGIKILA 660 (1134)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1134)
+|+++.+|.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=264.99 Aligned_cols=292 Identities=18% Similarity=0.269 Sum_probs=250.5
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.+.+..|||||++|++++-||.|.+|+..+++...+-+..+.- ... .+ ..+|.|+.||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fM--------Mm-d~aVlci~FSR 273 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFM--------MM-DDAVLCISFSR 273 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------cee--------ec-ccceEEEeecc
Confidence 4566789999999999999999999999998776654443332221 111 14 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEec-CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|...+|+|+ ||.|+||.+.+|.|++.|. .|+..|+|+.||. |+..+.+++.|.+++|--+.+|++++.++||++-|+
T Consensus 274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN 352 (508)
T ss_pred cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence 999999999 9999999999999999997 7999999999999 888888999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC-cEEEEE-ECCeEEEEeCCCcc
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
...|++||..+++++.||+|++|+.++.+++....... .. ..|..+..-|.+ ..++++ ..++|.+.++.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~---~d---~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv 426 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG---TD---YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV 426 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC---Cc---ccceeEEEcCCCCceEEEEcCCCeEEEEeccceE
Confidence 99999999999999999999999999998765433221 11 467777777654 455555 57899999999999
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
++.+..+....+...+.+.||.|.++++.++|+.++.|...+|.+-.++..|. ..++.++-+| ..+.||
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchhh
Confidence 99998887778888899999999999999999999999999999998887653 5667888899 669999
Q ss_pred EEeCCCcEEEEe
Q 001160 1087 LGMSDGAVHVVE 1098 (1134)
Q Consensus 1087 s~~~Dg~v~vW~ 1098 (1134)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=245.01 Aligned_cols=287 Identities=17% Similarity=0.279 Sum_probs=253.9
Q ss_pred EEEecCCCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 340 VRTLNQGSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+..-.|..+|..++||| +| ++|.+++.||.-.+-+=++|..+-+ +.+|.+.|++..+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence 33345888999999985 67 5899999999999988888887765 7899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecC
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEG 495 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~ 495 (1134)
..+..+.|+++.|-+.++||.-+|..+. .| .|..-|.+++|+.|.+ +|+||+.++.++|+|++..+ +...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 9999999999999999999999998776 44 4888999999999999 89999999999999998754 4578899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|.+.|..+.|.... +.+++.+.|++||+||.+++.....+.. ...|+++.++++|+++.++. .+.|.+||..
T Consensus 142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 99999999998765 7899999999999999999988887764 45799999999999998774 4569999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+..+++.++... .|.+.+++|+...+++|++|..++.||..+++.+..+ .+| ..+|.|+.|+|||...++|+.||
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCCCc
Confidence 999999988766 5889999999999999999999999999999999886 444 56899999999999999999999
Q ss_pred cEEEEECCCc
Q 001160 655 GIKILANSDG 664 (1134)
Q Consensus 655 ~i~iw~~~~~ 664 (1134)
+|++|....+
T Consensus 290 TirlWQt~~~ 299 (334)
T KOG0278|consen 290 TIRLWQTTPG 299 (334)
T ss_pred eEEEEEecCC
Confidence 9999998766
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=307.46 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=237.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|.+.|++++|+|+|+ ++|+|+.||.|+|||+.+...... . ...+...+ .+...|.+++|+| ++.+|
T Consensus 482 ~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~-~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 482 SSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVEL-ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred CCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEe-cccCceeeEEeccCCCCEE
Confidence 889999999999998 789999999999999764211000 0 00000011 2356799999987 57899
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999876554 6779999999999997 667 8999999999999999999998888754 67999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-----
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----- 576 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----- 576 (1134)
+.|++. +|.+|++|+.|+.|++||+++.. ....+.+|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 623 v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 998643 45899999999999999998765 355777888999999997 7788888874 78899999974
Q ss_pred -CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----------CCCCCCCcceEEEccCC
Q 001160 577 -GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----------ADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 577 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~d~ 644 (1134)
..++..+.+|.. .+.+++|++++.+|++|+.|+.|++|+.....++..+. ...+...|.+++|++++
T Consensus 697 ~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 357788988876 88999999999999999999999999987665443322 12223468999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001160 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
..|++|+.+|.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=235.92 Aligned_cols=248 Identities=18% Similarity=0.266 Sum_probs=221.4
Q ss_pred ccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 401 NALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
..++.++.++|..+.|+-||+|.++++.|.+|++|+...+..++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34578899999999999999999999999999999999998777 8889999999999999999 799999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|.++++||-++.. ++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 99999999999999999999999997654 899999999999999988654 455566666678888765 456777
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
++. ||+++.||++.|.....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 765 889999999999988877776 8999999999999999999999999999999999999988766555677
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++.....+++|+.||.+.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 88888889999999999999999877
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=256.21 Aligned_cols=232 Identities=16% Similarity=0.310 Sum_probs=206.5
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
....|.|+.+ |...+++|..|++|+|||.++-.+++ .+.||.+.|.|+.|. .+ +|++|+.|.+|++||+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 4456999998 77789999999999999999877666 788999999999985 44 899999999999999999
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
|+++.++-+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+. +++++++
T Consensus 267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsAS--- 337 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS--- 337 (499)
T ss_pred CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEec---
Confidence 999999999999999999854 69999999999999999877643 36778888999999865 5899886
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+|.+|++|++.+++.++++.+|.. .|.|+.+. ++++++|+.|.+|++||++.|.++..+++|.. -|.++.|.
T Consensus 338 -gDRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-- 409 (499)
T KOG0281|consen 338 -GDRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-- 409 (499)
T ss_pred -CCceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--
Confidence 488999999999999999999988 78888774 78999999999999999999999999998854 68999995
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+.+++|+.||+|++||+.++
T Consensus 410 ~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CceeeeccccceEEEEecccc
Confidence 668999999999999999876
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=270.51 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=220.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.++|.+++|+|++++|++++.||.+++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876443 6678999999999999998 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+..|...+.++.|++. +.++++++.|+.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998888899999999999999876 378888888999999999988888888888889999999999888888753
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++.|++||+++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.+++|+++
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~ 230 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPD 230 (289)
T ss_pred --CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcCC
Confidence 77899999999998888887766 89999999999999999999999999999988888776543 37899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++++++.+|.|++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 888888888999999998765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=222.61 Aligned_cols=313 Identities=16% Similarity=0.241 Sum_probs=244.1
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+++.++.....|.+++|+|.|. +.|+|+...+.+|.-+..-..++. -.+..+..+......-+.|.+.|.|.+
T Consensus 22 ~f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 22 HFEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred ceEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEE
Confidence 345677777888999999999998 889999999999887654322211 000011111122223467999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcC--CCCccceeeEEecccCCeeEEEEecC---CCcEEEEEEc-CCCcEEEEECCCCee
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIAFAHP---NKQLCIVTCG-DDKMIKVWDVVAGRK 489 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~sg~-~d~~i~iwd~~~~~~ 489 (1134)
|||+|.+||+|+.|.+|++...+ +.+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|-.+|+.
T Consensus 97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence 99999999999999999987654 33444445578889999999999654 222 566654 588899999999999
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeeC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+.+.||.+.|.++- +-+|..+++|+.|.+|++||++-..++..+.. ....|.+++..|.|++|+++-.
T Consensus 176 ~~a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~- 251 (350)
T KOG0641|consen 176 FHALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA- 251 (350)
T ss_pred ceeecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence 999999999999884 22448999999999999999998777665432 2357999999999999999875
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEE
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~ 640 (1134)
|....+||++.++.++.|..|.. .|+|+.|+|...++++++.|..|++-|+... ..+..+....+...+..+.|
T Consensus 252 ---dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 252 ---DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred ---CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEe
Confidence 77799999999999999999988 8999999999999999999999999998642 12222222233456788999
Q ss_pred ccCCCEEEEEeCCCcEEEEECC
Q 001160 641 NKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+|..--+++.+.|.++.+|-++
T Consensus 328 h~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCccceeeeccCcceEEEeccC
Confidence 9998889999999999999753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=256.06 Aligned_cols=283 Identities=18% Similarity=0.258 Sum_probs=242.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+.|.+++|||...+=+|+.+ .-.+.||+..+...... +......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEEE
Confidence 3568999999997764444433 45899999887765542 334567899999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+..|.|+|+|+.+...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977654555 67899999999999998876 899999999999999999987779999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~ 583 (1134)
++|..+ ..++|||.||.|++||++.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+|.. +..+
T Consensus 161 ~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 998754 7999999999999999998865555556889999999999999999986 45699999996554 4445
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..|.+ .|+|+++..++..|+++|-|+.|++||+.+.+.+..+... .+|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehh
Confidence 54776 9999999999999999999999999999999999988765 37899999999999999999999877643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=302.84 Aligned_cols=325 Identities=12% Similarity=0.125 Sum_probs=241.0
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
+|-.++|+..........+.-. ...|...|.+++|+|+|+++++++.|+.|++|++..... .+...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~--~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~---------- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGD--LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDI---------- 522 (793)
T ss_pred hhhhhhhcccceEEEEeecccc--ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--ccccc----------
Confidence 3556667666432211111111 133788999999999999999999999999999743110 00000
Q ss_pred CCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
.... ..+. + ...+.+++|++ ++.+||+++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+
T Consensus 523 --~~~~-~~~~---~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 523 --HYPV-VELA---S-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred --ccce-EEec---c-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 0000 0011 2 56789999987 578999998 999999999999999999999999999999975789999999
Q ss_pred CCCcEEEEEcCCceEEEEecCcccceEEEEEe-cCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001160 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS-PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s-~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
.||+|++||+.++..+..+..| ..|.++.|+ +++.+|++|+.|+.|++||+.+.+. .+....+|. ..|..+
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v 667 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYV 667 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEE
Confidence 9999999999999988888755 679999995 5799999999999999999987542 122334555 468999
Q ss_pred EECCCCcEEEE-EECCeEEEEeCCCc----ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec
Q 001160 981 QFHNDQTHLLV-VHESQISVYDSKLE----CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 981 ~fspdg~~l~~-~~d~~v~vwd~~~~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~ 1055 (1134)
.|. ++.+|++ +.|++|++||+... ....+....+|...+.+++|++++.+|++|+.|+.|++|+......+...
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 997 6677777 67999999998321 11112233567899999999999999999999999999998876554333
Q ss_pred CCcccccc---cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1056 GPSAYIPT---YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1056 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
......+. ....+...+.+++|+| ++.+|++|+.||.|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 21111000 0122334577999999 7899999999999999996
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=250.51 Aligned_cols=670 Identities=13% Similarity=0.175 Sum_probs=359.4
Q ss_pred ccccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--c-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--L-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~--~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..+-. + ..-..+.+..-.|.++.|+|.... +++ .+.-|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCce
Confidence 4788999999999999 677999999999999999985432 1 111123334457899999998774 444 455789
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce-eEecCCCC-cEEEEEECCCCCEE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDAPGN-WCTMMAYSADGTRL 556 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~-~v~~~~~s~~~~~l 556 (1134)
++|||+.+++.+..+.+|...|.++.|+. ||.+|++.+.|+.|+|||.+..... ....+|++ .-..+.|.-+-..|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Wse--DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSE--DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhcccccc--CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 99999999999999999999999999955 6699999999999999999876554 34455544 44567777776678
Q ss_pred EEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEE--EEeCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT--TVDADGGL 632 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~ 632 (1134)
++.+.+......+++||.+. +.+++++.......|..--|.||.+.++.+| .+.+++++.+...++.- .+.....
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle- 308 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLE- 308 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcch-
Confidence 77766544567799999886 4566666554443566567899988877655 67888888876554321 1110000
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc----------hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG----------VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
......++-|...+-+..+. ..+++.+... .+..+.|.....+-.... .+. ...-..+.....+
T Consensus 309 ~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~-~p~---~~ageWlnG~Nq~ 382 (1012)
T KOG1445|consen 309 EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGA-EPG---CTAGEWLNGTNQV 382 (1012)
T ss_pred hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCC-ccC---cCccceecCcccc
Confidence 00011112221111111110 0111111100 000111100000000000 000 0000000000000
Q ss_pred ccccCCCCCCCCC------CCCCcccCccCCCCccc------------------ccc--cccccccccCccceeccCCCC
Q 001160 703 SAAIAPTLERPDR------GPPAVSISSLGTIDGSR------------------LVD--VKPRVAEDVDKIKSWRIPDIS 756 (1134)
Q Consensus 703 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------------~~~--~~~~~~~~~~~i~~w~~~~~~ 756 (1134)
..-..+.|..... ..+.+......+...++ .|+ ....+. ....++-.+.....
T Consensus 383 vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~-~~~e~r~l~~~~~E 461 (1012)
T KOG1445|consen 383 VQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP-KKEEVRELDYRPYE 461 (1012)
T ss_pred ccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC-cchhhhhhcccccc
Confidence 0000001100000 00000000000000000 011 111111 00111111111000
Q ss_pred CccceeEe---ecCCcccccceEEEEEecCCcceEEeec----c--CeeEEeecccccCCC----C--CCcccc------
Q 001160 757 DPSQIKAL---RLPDSIAASKVVRLIYTNSGLSLLALAS----N--AVHKLWKWQRTERNP----S--GKATAN------ 815 (1134)
Q Consensus 757 ~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~----d--g~v~vw~~~~~~~~~----~--~~~~~~------ 815 (1134)
.......- .-..++..+++..+ +|....++--.+ + .+..+..-..++..| . |..+..
T Consensus 462 ~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~ 539 (1012)
T KOG1445|consen 462 KENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPL 539 (1012)
T ss_pred cccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccc
Confidence 00000000 00000001111000 000000000000 0 000000000000001 0 000000
Q ss_pred -c----------CcccccCCCCCccccc-----cCCCCCCCCceEEEEeccCCCEEEEE---eCCeEEEEECCCC-eEEE
Q 001160 816 -V----------APQLWQPPSGTLMTND-----INESKPTEESAACIALSKNDSYVMSA---SGGKVSLFNMMTF-KVMT 875 (1134)
Q Consensus 816 -~----------~~~~w~~~~~~~~~~~-----~~~~~h~~~~i~~~~~s~dg~~la~~---sdg~i~vwd~~~~-~~~~ 875 (1134)
. .+.-+.-..|+..... +....- .-+-.+--|..+.+++|+- +.|.|.||++..- ++.-
T Consensus 540 s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~-~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 540 SQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT-RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred cccccccceeeccchheeeccCccccchhhhhhhhcccc-cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 0 0000000111110000 000000 1111233455566777753 3789999999752 2211
Q ss_pred -EecC--CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-------eEEEEecCcccceEEEEEecC-CCEEEEEcC
Q 001160 876 -MFMS--PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-------EVKTKLKGHQNRITGLAFSPT-LNALVSSGA 944 (1134)
Q Consensus 876 -~~~~--~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-------~~~~~l~~h~~~i~~l~~s~d-~~~l~s~~~ 944 (1134)
.+.+ ....|+.+.|.|.|...||++++||.|++|.+..+ +.-..+.+|...|+++.|+|- ...|++++.
T Consensus 619 gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 619 GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 1111 34569999999999999999999999999998754 345678999999999999994 568999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEE
Q 001160 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v 1023 (1134)
|.+|++||+.+++. ...+.+|. +.|..++|||||+++|+ |.|++|+||+........+.........--.+
T Consensus 699 d~Ti~lWDl~~~~~-----~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 699 DSTIELWDLANAKL-----YSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred cceeeeeehhhhhh-----hheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeE
Confidence 99999999999773 33456777 68999999999999999 89999999999444433333322223455677
Q ss_pred EEccCCCEEEEEecCC----cEEEEeCCCcc--eeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1024 IYSCDGLLVYAGFCDG----AIGVFDAETLR--FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1024 ~~s~dg~~l~~~~~dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
.|.-||+++++.+.|+ .|.+||..+-. .+.+.... ..-.++--.|+++.+-++++|-.|..|.+|
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vaps~LvP~YD~Ds~~lfltGKGD~~v~~y 841 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAPSPLVPHYDYDSNVLFLTGKGDRFVNMY 841 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccCccccccccCCCceEEEecCCCceEEEE
Confidence 8889999999888775 48889887632 23222211 112333445666566788899999999999
Q ss_pred ecCCCcc
Q 001160 1098 EPSDAEL 1104 (1134)
Q Consensus 1098 ~~~~~~~ 1104 (1134)
++...+.
T Consensus 842 Ev~~esP 848 (1012)
T KOG1445|consen 842 EVIYESP 848 (1012)
T ss_pred EecCCCc
Confidence 9986664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=247.38 Aligned_cols=290 Identities=18% Similarity=0.338 Sum_probs=241.4
Q ss_pred ccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 335 LTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 335 ~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.+.++...+.|.+.|.++... ++ .+.+|++||.++|||..... ..+ +.||.++|.++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~v 150 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKSV 150 (423)
T ss_pred CCCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceeee
Confidence 456677778899999999998 44 56799999999999987543 322 67999999998
Q ss_pred EEcCCCC---EEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC----
Q 001160 415 VWGPDGL---MLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---- 486 (1134)
Q Consensus 415 ~~spdg~---~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---- 486 (1134)
+|--... .+++++.|.++++|.++.++.. .......||...|.++...++|. .+++|+.|.+|.||+..+
T Consensus 151 ~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 151 AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccc
Confidence 8854333 5999999999999999887643 22223449999999999999999 899999999999999321
Q ss_pred ---------------------CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEE
Q 001160 487 ---------------------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 487 ---------------------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
+.++-++.||..+|.++.|++. ..+++++.|.+|+.||+.+++....+.. ...+.
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~ 304 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLN 304 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeec-Cccee
Confidence 1245678899999999999873 6899999999999999999988877654 45789
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1134)
++..+|..++|++++. +..+++||.+++. ...+|.+|.. .|.++.|+|... .|++++.|+++++||+++.+
T Consensus 305 ~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 305 CISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred EeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999986 7789999999753 5678899988 999999999875 46779999999999999877
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++..+..|. ..|.++.|+. +..+++|+.|++|+|+.-
T Consensus 380 ~plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 380 APLYDIAGHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CcceeeccCC--ceEEEEeccC-CceEEeccCcceEEEecc
Confidence 888888774 4799999975 668999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=238.67 Aligned_cols=297 Identities=16% Similarity=0.220 Sum_probs=249.6
Q ss_pred CCcccccceEEEEEe---cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCce
Q 001160 767 PDSIAASKVVRLIYT---NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s---~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i 843 (1134)
..++|..+|..++|| |+|-.|++++.|+.-. +.+-++|.-+.. +.+ | .+.|
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pm----------------------lr~g~tgdwigt-feg--h-kgav 62 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPM----------------------LRNGDTGDWIGT-FEG--H-KGAV 62 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCch----------------------hccCCCCCcEEe-eec--c-Ccce
Confidence 336799999999998 6899999999987533 334455555543 444 8 9999
Q ss_pred EEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-EEEEec
Q 001160 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLK 921 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~-~~~~l~ 921 (1134)
++.++..+....|+++ |-+.+|||.-+|..+..|. |..-|.+++|+. |.++|++|+.+..+||||++.-+ +...+.
T Consensus 63 w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 63 WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 9999999999999998 9999999999999999998 888899999999 89999999999999999998654 456789
Q ss_pred CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEe
Q 001160 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1001 (1134)
Q Consensus 922 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd 1001 (1134)
+|.+.|..+.|....+.++|...|++||+||..++...+..... ..|+++..++||++|.++..+.|.+||
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWD 211 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEec
Confidence 99999999999988888999899999999999999865433222 468999999999999999999999999
Q ss_pred C-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCC
Q 001160 1002 S-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1080 (1134)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1134)
. ....++.+.. ...|.+...+|+...+++|++|..++.||..+|+.+..... +|-.-+.|+.|+|
T Consensus 212 aksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk---------gh~gpVhcVrFSP- 277 (334)
T KOG0278|consen 212 AKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK---------GHFGPVHCVRFSP- 277 (334)
T ss_pred cccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc---------CCCCceEEEEECC-
Confidence 9 7777776654 56899999999999999999999999999999999876421 2335566999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCc--cccCCCCCCCC
Q 001160 1081 EPNQIALGMSDGAVHVVEPSDAE--LKWGGTPSQDN 1114 (1134)
Q Consensus 1081 d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~ 1114 (1134)
||...++||.||+|++|.+.-++ ..|.--.|.+.
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~ 313 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDD 313 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCchhhccccChhhh
Confidence 89999999999999999987666 34555555533
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=255.71 Aligned_cols=294 Identities=17% Similarity=0.219 Sum_probs=252.2
Q ss_pred ccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCe
Q 001160 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
+..|......+. |.+.|..+.|-++.. .|++|+.|..|++|++..++.-.. ..|.|..+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 445555566666 889999999999976 589999999999999987662211 1267888999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
+.+.|.++++++++++.|+.+++|+++..+... +|.||.+.|+++.|..... .+++|+.|.+|++||+..+.|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987665 8889999999999988776 59999999999999999998887
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
++- ....+..|+..+ ..+++|-.|++|++||+++.......+.++ .|+++..++++..+++++. |.++.+
T Consensus 298 t~l-~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v 367 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV 367 (459)
T ss_pred ccc-ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence 754 334455565532 678999999999999999999888888766 9999999999999999975 778999
Q ss_pred EeCCCCeeEEEecCcc---CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 572 WNESEGAIKRTYSGFR---KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
.|+++.+....+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..++
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 9999999888876542 2247789999999999999999999999999999999998776655799999999999999
Q ss_pred EEeCCCcEEEE
Q 001160 649 VTTSDNGIKIL 659 (1134)
Q Consensus 649 ~~~~dg~i~iw 659 (1134)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=277.78 Aligned_cols=306 Identities=17% Similarity=0.260 Sum_probs=251.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
++..|.+++.+|||. .+|+|+ .||.++||+.+.--... ..++.. .+........|.+.|+|+.|||||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 356799999999998 689999 89999999976321100 011111 12222335679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCC----------C-----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 423 LGVAFSKHIVHLYTYNP----------T-----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11335567889999999999999999 9999999999999999999
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------CCcEEEEEECCCCCEEEEEee
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.+..+.+|.+.|..+.|.|.+ ++|++-+.|++|++|++.+-+....+..+ ...+..+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999998866 99999999999999997775555544433 336789999999999998876
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC--------C-----C----EEEEEeCCCeEEEEECCCCeeEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------R-----N----RFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~----~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
-+.+...+.|.+-.+.+.-..+-||.. ++.++.|+|. | + .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 666678899999988898999999998 9999999972 1 1 46679999999999998888776
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+..-. ...|..++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 664332 247999999999999999999999999998754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=226.36 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=240.1
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..|+.+++.+.|+.+|. ||++++.|.++.||-..+|+.+-+ +.||.+.|+|++...+.++
T Consensus 7 ~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred ccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCcce
Confidence 34999999999999998 899999999999999999998876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-----CCCcEEEEECC-------CCeee
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVV-------AGRKQ 490 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-----~d~~i~iwd~~-------~~~~~ 490 (1134)
+++|+.|.++++||+++|+++. .+. ...+|..+.|+++|. +++.+. ..+.|.++|++ ..++.
T Consensus 67 liTGSAD~t~kLWDv~tGk~la---~~k-~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLA---TWK-TNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred eeeccccceeEEEEcCCCcEEE---Eee-cCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccCce
Confidence 9999999999999999998776 332 467899999999998 444443 35689999998 45567
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..+..+...++.+-|.|.+ ++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |.+-
T Consensus 141 ~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtta 214 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTTA 214 (327)
T ss_pred EEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cccc
Confidence 8888899999999998876 899999999999999999976655 55778889999999999999999974 7789
Q ss_pred EEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe--EE------------EEECCCCeeEEEEeCCCCCCCc
Q 001160 570 VEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ--IK------------FWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
++||..+-+.++++.... +|++.+++|-...++.||.-.. |. +|++-..+.+..+.+| ..+|
T Consensus 215 kl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPI 290 (327)
T ss_pred eeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCc
Confidence 999999999999998765 8999999999888888663221 21 2222222344455555 5699
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++|+|+|+..++|+.||.||+.-....
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccc
Confidence 99999999999999999999999876543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=222.00 Aligned_cols=237 Identities=14% Similarity=0.211 Sum_probs=205.5
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.||+.+++.+.++.+|.+|.+|+.|.++.+|-...|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998888766 8899999999999999999 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEcc-------CCCceeEecCCCCcEEEEEEC
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYD-------YLGSRVDYDAPGNWCTMMAYS 550 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1134)
|+++|+++..++ ...+|..+.|++.+ .+++.... .+.|.++|++ ..++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999987 66789999998765 55555433 4679999998 344566777788999999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
|-+++|++|.. ++.|.+||.++|+ .+..-+.|.. .|+.+++++|..++++++.|.+-++||..+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999974 8889999999985 4555566666 8999999999999999999999999999999999998754
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.+|++.+++|-...++.|+....
T Consensus 232 ---~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ---ccccceecccccceEEecCCcee
Confidence 47999999998777777765433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=263.17 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=224.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
-..|....+++|+.. +++++.+..+..|+...+..+. +.............+.+|.+.|.+++|+| ++++||
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 346777788888764 4556767788888876654221 11111111112234789999999999999 899999
Q ss_pred EEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 425 VAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999987532 1234478899999999999998644 89999999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA- 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~- 578 (1134)
.+++|++++ .+|++++.|++|++||+++++....+..|.+. +..+.|.+++..+++++.++..++.|++||+++..
T Consensus 172 ~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999998854 89999999999999999998888788777653 45788999999998877655568899999998754
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
++.....+....+....|+++++.+++++ .|+.|++||+.+++++....... ..++..++|.|.-
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~ 315 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW 315 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence 44444444443566678999999999887 59999999999998877765432 3467888888853
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=230.61 Aligned_cols=313 Identities=17% Similarity=0.214 Sum_probs=245.4
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc-cccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA-HKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.++-.....|+.++.+.+|||||. ++|+|+.|-.|+|.|++..-... -+.+..-+..... +. ...+..|.+.|+++
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~h-Pv-IRTlYDH~devn~l 178 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARH-PV-IRTLYDHVDEVNDL 178 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCC-ce-EeehhhccCcccce
Confidence 344555556999999999999997 89999999999999997321100 0000011111111 11 12367899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF- 493 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~- 493 (1134)
.|+|....|++|+.|++|+++|+......+....++ ...+|.++.|.|.|. +|+.|.+-.++++||+++-++...-
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence 999999999999999999999998765544333333 456899999999999 8999999999999999998876543
Q ss_pred --cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CC-CCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 494 --EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-AP-GNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 494 --~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..|.+.|+++.+++.+ .+.++++.||.|++||--+.+++..+. .| +..|.+..|+.+|+++++.+. |..+
T Consensus 256 Pd~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v 329 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV 329 (430)
T ss_pred cccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence 3589999999997765 899999999999999988888877654 34 448999999999999999874 8899
Q ss_pred EEEeCCCCeeEEEecCccCc----ceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 570 VEWNESEGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 570 ~~wd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
++|.+.+++++..+.|.... --+...|+....+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE 408 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence 99999999999999876211 122345777778877754 567899999999887766643 455688999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001160 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
.-+.+++.|..+|+|--
T Consensus 409 p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 409 PAFMTCSDDFRARFWYR 425 (430)
T ss_pred Cceeeecccceeeeeee
Confidence 99999999999999963
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=245.01 Aligned_cols=283 Identities=17% Similarity=0.252 Sum_probs=232.9
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.|.+++|+|...+=++..+.-.+.+|+..+ -........ . ...++++.|-.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~sr---F-k~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFSR---F-KDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHHh---h-ccceeEEEeec
Confidence 457899999999776666666666788886532 111111111 2 77899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988877888899999999999999999999999999999999999999887789999999999
Q ss_pred EEEecC-CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCC-Ccce
Q 001160 930 LAFSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSK-LECS 1007 (1134)
Q Consensus 930 l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~-~~~~ 1007 (1134)
.+|+|- +.+++|||.||+|++||..... ......-.| .+|..+.|-|.|..+|+++...|+|||+. +...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999996 5589999999999999998753 223333333 35899999999999999999999999994 5554
Q ss_pred eccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..... .|...|+|+++..|++.|++|+-|+.|++||+.+.+.+..+... ..+++++-+| |+..++.
T Consensus 231 l~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-----------~pvLsiavs~-dd~t~vi 296 (487)
T KOG0310|consen 231 LTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-----------GPVLSIAVSP-DDQTVVI 296 (487)
T ss_pred hhhhh--cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-----------cceeeEEecC-CCceEEE
Confidence 33322 27899999999999999999999999999999998888887643 5567888888 6689999
Q ss_pred EeCCCcEEEEecCC
Q 001160 1088 GMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1088 ~~~Dg~v~vW~~~~ 1101 (1134)
|..||.+.+=+...
T Consensus 297 GmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 297 GMSNGLVSIRRREV 310 (487)
T ss_pred ecccceeeeehhhc
Confidence 99999887765443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-26 Score=223.10 Aligned_cols=281 Identities=14% Similarity=0.229 Sum_probs=232.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.|+++.|+++|. ++++++.|.+++|||..+++.+.+ +..++..|..+.|......++.
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i~ 73 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVIH 73 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEEE
Confidence 57899999999998 566788899999999999988765 4557778999999888887777
Q ss_pred EeC--CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 426 AFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 426 ~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++. |.+|+..++.+.+.++ .+.||...|.+++.+|-++ .+++++.|++|++||++..++...+.....+ .+
T Consensus 74 sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 74 SSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred ccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 766 8899999999998777 8899999999999999998 8999999999999999988887766544444 35
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecC---CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
+|.|. |-++|++.....|++||++.-. +...+.. .....+.+.|||||++++.+.. .+.+++.|.-+|.
T Consensus 147 AfDp~--GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 147 AFDPE--GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGT 220 (311)
T ss_pred eECCC--CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCc
Confidence 66554 4788888888899999998752 2333333 3568899999999999998864 7789999999999
Q ss_pred eEEEecCccCcc--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 579 IKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 579 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.+.++.++.... -...+|+||++++++|+.||+|.+|++++++.+..+.+. ...++.++.|+|.-.++++++. .+
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s--~l 297 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS--NL 297 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc--eE
Confidence 999998876532 245779999999999999999999999999999999875 3457899999998777776654 67
Q ss_pred EEEECC
Q 001160 657 KILANS 662 (1134)
Q Consensus 657 ~iw~~~ 662 (1134)
.+|=..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 788654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=263.76 Aligned_cols=300 Identities=15% Similarity=0.198 Sum_probs=217.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC---CCC
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP---DGL 421 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp---dg~ 421 (1134)
|.+.|+++.||+||+ +||+|+.||.|+||.+...+...... -+.. ..... + .-.+.+.-+.-++ .++
T Consensus 266 h~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~~---~~~~~--~-~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDSS---CMYFE--Y-NANSQIEPSTSSEEKISSR 335 (712)
T ss_pred cCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---cccc---hhhhh--h-hhccccCcccccccccccc
Confidence 899999999999998 79999999999999998744321100 0000 00000 0 0000011111111 011
Q ss_pred --EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 422 --MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 422 --~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
..-.+.....+.+-+..-.=.-.++..+.||.+.|.++.||.++ +|++++.|++|++|++....+++.|. |...
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDF 411 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence 11111122221111111100112344788999999999999887 79999999999999999999999996 9999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|+|++|+|.+| .++++|+.|+.||||++...+... ...-..-|++++|.|||++.+.|+. +|.+++|+....+.
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLKL 485 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEe----ccEEEEEEccCCeE
Confidence 99999999876 899999999999999998654443 3333478999999999999999987 77899999998777
Q ss_pred EEEecCcc-------CcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 580 KRTYSGFR-------KRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 580 ~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
...+..+. ...|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.||++|++++
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 66554321 1269999999755 458888899999999999999998888765555556789999999999999
Q ss_pred CCCcEEEEECCCc
Q 001160 652 SDNGIKILANSDG 664 (1134)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1134)
.|..|++|+....
T Consensus 566 eDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 566 EDSWVYIWKNDSF 578 (712)
T ss_pred cCceEEEEeCCCC
Confidence 9999999998543
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=225.72 Aligned_cols=274 Identities=18% Similarity=0.253 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc-cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.++.|.+++|||....++++||-||+|++|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999874 3221 1245699999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+....-.|+|||.|++|+.||.+...++.++. -...+.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 56789999999999876654489999999999999999999988876 55677777
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE-e-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--ee
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AI 579 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~ 579 (1134)
..-. .+++.+..++.|.+|+++++..... . ..-.-.+.|++..+|....+.|+. +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 6889999999999999977554332 1 223347889999998888888876 677877777765 55
Q ss_pred EEEecCccC--------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 580 KRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
-.+|+.|.. -.|++++|+|....|+++|.||++.+||-+....+.+.+.+. .+|++.+|+.+|.++|.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeEecCCCCEEEEEe
Confidence 556777763 247789999999999999999999999998877777766553 4899999999999988664
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=223.81 Aligned_cols=259 Identities=17% Similarity=0.232 Sum_probs=215.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC--CCcEEEEEcCCceE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~--dg~i~iwd~~~~~~ 916 (1134)
...|.++.|+++|.++++++ |..+++||..+++.++++..+.-.+..+.|.. ....+..++. |.+|+..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 67899999999999999988 88999999999999999998888899999987 4555555665 88999999999999
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC-
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES- 995 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~- 995 (1134)
++.|.||...|.+|+.+|-+..++|++.|++|++||+...+++-...+ ..-..+||.|.|-++|++.++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----------CCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999997665432111 123578999999999997554
Q ss_pred eEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001160 996 QISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 996 ~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
.|++||+ ...-...+....+-..+.+.|.|||||++++.++..+.+++.|.-+|..+..+.... .....+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~~ 235 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNLP 235 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCcc
Confidence 9999999 233334444444447899999999999999999999999999999999988887553 222455
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1118 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1118 (1134)
+.++|+| |++++++|+.||+|++|++.+++.......| ++|+.+
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~ 279 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVS 279 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcc
Confidence 8899999 8999999999999999999999966655554 455444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-26 Score=217.23 Aligned_cols=274 Identities=14% Similarity=0.216 Sum_probs=236.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|...|.+|+|+-+|. -||+|+.|+++.+|++......... ...+|.+.|-.++|+| ....+
T Consensus 19 ~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcce
Confidence 677999999999998 5899999999999999987544321 2568999999999998 56799
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++++.|.+|++||+..+++.... . ..+.=..+.|+|+|+ +++.++.|..|.+.|.++.+.+...+ ....+.-+
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~ 153 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEI 153 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeee
Confidence 99999999999999999877632 2 233344689999999 89999999999999999888776554 45567788
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
+|+.++ ++++....-|+|.|......+.+..+..|.....|+.|+|+|+++++|+. |..+.+||+...-+++.+
T Consensus 154 ~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 154 SWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCI 227 (313)
T ss_pred eecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheee
Confidence 887544 67777788899999999999999999999999999999999999999986 778999999999899999
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
..+.- +|+.++|+.+|++|++|++|..|-|=++++|..+..++..+ +...++|+|...+||.+.+|
T Consensus 228 sRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 228 SRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88776 99999999999999999999999999999999999998654 56899999999999988775
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=218.01 Aligned_cols=276 Identities=14% Similarity=0.226 Sum_probs=234.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE--EecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.+++|...|.+++|+.+|. .+++|+.|+++.+|++...+... ...+|.+.|-.++|+|..+ ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5678999999999999999 89999999999999998876554 4568999999999998765 79999999999999
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
||++..++..........+ .++|+|+|.+++++.. +..|...|.++.+.+...+... .++-++|+.++..++.
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~k----dD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNK----DDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFL 164 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecC----cccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEE
Confidence 9999999988777665555 5789999999999864 6679999999988877766544 5777889988888888
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1134)
....|.|.|.....-+++..+..|. ....|+.|+|+|+++|+|+.|..+.+||+... -+.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~i-------------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCI-------------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhheee--------------
Confidence 7788999999999999999999875 46789999999999999999999999998643 111000
Q ss_pred CCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEee
Q 001160 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1134)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1134)
T Consensus 228 -------------------------------------------------------------------------------- 227 (313)
T KOG1407|consen 228 -------------------------------------------------------------------------------- 227 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 766 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
. ++ ..+|+.
T Consensus 228 --------------------------------------------------------------------s--Rl-dwpVRT 236 (313)
T KOG1407|consen 228 --------------------------------------------------------------------S--RL-DWPVRT 236 (313)
T ss_pred --------------------------------------------------------------------c--cc-cCceEE
Confidence 0 03 778899
Q ss_pred EEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC
Q 001160 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903 (1134)
Q Consensus 846 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d 903 (1134)
+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+| ...+||.+++|
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 99999999999999 8889999999999998887 788999999999 89999998876
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=221.94 Aligned_cols=285 Identities=16% Similarity=0.242 Sum_probs=229.1
Q ss_pred eeEEEEecC--CCeEEEEEe-----CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-C
Q 001160 349 VMSMDFHPQ--QQTILLVGT-----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-G 420 (1134)
Q Consensus 349 V~~v~~spd--g~~llasg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g 420 (1134)
=.++.|||- ++..+|++. ..|.+.|-++..++.+.. +..+ .-.+.+..++||++ .
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE 73 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence 357888884 442233332 367899999875444431 1111 24567999999995 5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+.+++++.||++++||+... -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.+.++.||...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence 67888999999999995433 2344478899999999999997776 67888999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE-EEEeeCCCCCCcEEEEeCCCC-e
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL-FSCGTSKEGESHLVEWNESEG-A 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~-~ 578 (1134)
...+|+|... +.++++|.|+++++||++.......+..|...+.++.|+.-...+ ++++ .|+.|+.||++.- .
T Consensus 151 y~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~----vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 151 YQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG----VDNLVRGWDIRNLRT 225 (311)
T ss_pred EEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC----CCceEEEEehhhccc
Confidence 9999999854 799999999999999999998888899999999999999866555 4554 4888999999874 4
Q ss_pred eEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCc
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNG 655 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~ 655 (1134)
++..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...|. .-+..+.|++ ++.++|+.+.|+.
T Consensus 226 pl~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 226 PLFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred cceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeecccccc
Confidence 6788888877 89999999976 567889999999999998543 445555443 3678888988 7789999999999
Q ss_pred EEEEEC
Q 001160 656 IKILAN 661 (1134)
Q Consensus 656 i~iw~~ 661 (1134)
++||+.
T Consensus 303 l~Vw~p 308 (311)
T KOG0277|consen 303 LYVWNP 308 (311)
T ss_pred eeeecc
Confidence 999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-27 Score=226.85 Aligned_cols=253 Identities=15% Similarity=0.272 Sum_probs=206.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC------------CCc---cceeeEEecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP------------TGE---LRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~------------~~~---~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1134)
+..|+.++.+.+|||||.++|+|+.|..|+|.|++. +.. -..+.++..|...|+++.|.|...
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~-- 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET-- 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh--
Confidence 667999999999999999999999999999999871 111 113457778999999999999998
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCc
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNW 543 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~ 543 (1134)
.|++|+.|++|+++|.......+.++ ....+|.++.|+|.+ .+|+.|....++++||+.+.++...- ..|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 99999999999999987644332222 245789999999977 89999999999999999998886644 346679
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.++++
T Consensus 264 i~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999974 88899999999999998864 5555799999999999999999999999999999999
Q ss_pred EEEEeCCCCC---CCcceEEEccCCCEEEEEeC-CCcEEEEECCCc
Q 001160 623 LTTVDADGGL---PASPRLRFNKEGSLLAVTTS-DNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~~~ 664 (1134)
+..+.+.+.. ..-+...|+....+++.-.. .+.+.-||.++.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9998765322 22244556666666665443 467777887766
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=261.50 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=247.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+..|. ++ .+.+|+.|++|++||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 56789999999 44 477899999999999999887653 2679999999999998899999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|.++++||+.+|++.. .+.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999998777 88899999999987543 789999999999999999999999999999999998
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-eeEEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~ 583 (1134)
.+ +.++++|+.|++|++||+.+.+++..+.+|..+|+++.+.+. ..+++++. |+.|++||++++ +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhh
Confidence 75 379999999999999999999999999999999999988776 88999987 678999999999 999999
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+|.. .+..+. ..++++++++.|++|++||..+++++.++..+ +...|..+++. ...+++++.+|.+++||+.+
T Consensus 410 ~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99987 554443 45789999999999999999999999999875 33467777665 46788999999999999999
Q ss_pred chhhhhhh
Q 001160 664 GVRLLRML 671 (1134)
Q Consensus 664 ~~~~~~~~ 671 (1134)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 9 444433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=229.48 Aligned_cols=282 Identities=20% Similarity=0.298 Sum_probs=235.2
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEcc
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~ 529 (1134)
-|.+.|.++.-. ++ .|+||+.||.+++|| ..|+.++.+.||.++|.+++|...++ ...|++++.|.++++|.++
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 488899998887 55 899999999999999 78999999999999999888765432 2469999999999999988
Q ss_pred CCCcee----EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-------------------------CCeeE
Q 001160 530 YLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-------------------------EGAIK 580 (1134)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-------------------------~~~~~ 580 (1134)
.+.... ...+|...|.+++..++|..+++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765433 34589999999999999999999986 7789999921 13466
Q ss_pred EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.++.+|.+ +|.++.|++ ...+++++.|.+|+.||+.++.....+... ....++.++|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeecC
Confidence 77889988 999999998 678999999999999999999999888754 3679999999999999999999999999
Q ss_pred CCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccc
Q 001160 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRV 740 (1134)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1134)
.+++..
T Consensus 329 PR~~~g-------------------------------------------------------------------------- 334 (423)
T KOG0313|consen 329 PRTGDG-------------------------------------------------------------------------- 334 (423)
T ss_pred CCCCCC--------------------------------------------------------------------------
Confidence 876610
Q ss_pred ccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 741 AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 741 ~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
.+....
T Consensus 335 ---------------------------------s~v~~s----------------------------------------- 340 (423)
T KOG0313|consen 335 ---------------------------------SVVSQS----------------------------------------- 340 (423)
T ss_pred ---------------------------------ceeEEe-----------------------------------------
Confidence 000000
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEE
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNII 897 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~l 897 (1134)
+.+ | .+.|.++.++|... .|++|+ |+++++||+.+.+ ++..+.+|...|.++.|. ++..|
T Consensus 341 ------------~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~I 403 (423)
T KOG0313|consen 341 ------------LIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLI 403 (423)
T ss_pred ------------eec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceE
Confidence 112 6 77888888888554 567777 9999999999887 899999999999999998 46799
Q ss_pred EEEeCCCcEEEEEc
Q 001160 898 AIGMEDSSVQIYNV 911 (1134)
Q Consensus 898 asg~~dg~i~iwd~ 911 (1134)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=239.86 Aligned_cols=298 Identities=19% Similarity=0.248 Sum_probs=227.4
Q ss_pred ccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
.|...|.++++.|.|.++++|+-|..|++||+..-.... ...+...+.. ...|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P~E---~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQPCE---THQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCccc---ccccceeeec
Confidence 378889999999999999999999999999986421100 0011111221 4479999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEEE------------ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTM------------FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~- 915 (1134)
+.|..|++.+ ....+|+|-+....... -+||...++|.+|+|.....+++++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888887 78899999876554332 357999999999999878889999999999999998643
Q ss_pred EEEEec-----CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEE
Q 001160 916 VKTKLK-----GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLL 990 (1134)
Q Consensus 916 ~~~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~ 990 (1134)
.+.+++ +-.-+++.++|++||+++|+|..||.|.+|+..+........+ ...|.. ...++++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhh
Confidence 223332 3334689999999999999999999999999855333222222 233432 14799999999999999
Q ss_pred E-EECCeEEEEeC-CCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEeCCCcceeeecCCcccc
Q 001160 991 V-VHESQISVYDS-KLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFC------DGAIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 991 ~-~~d~~v~vwd~-~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~------dg~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
+ +.|+++++||+ +.+ .+..+... ....+-+.++||||.++|++|+. .|.+.+||..+.+.+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence 9 99999999999 433 33333322 22567789999999999999873 577999999999999988744
Q ss_pred cccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE-ecCCCc
Q 001160 1062 PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV-EPSDAE 1103 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW-~~~~~~ 1103 (1134)
..+++.|.|+| .=++|..|+.||+++++ |.+..+
T Consensus 457 -------~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -------TASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -------CceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 37788999999 66889999999999886 554443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=250.34 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=239.4
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC
Q 001160 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~ 428 (1134)
.+-++||..+ ++|+|. +..|.+|+..++....- ..-+.+.|+++.|+++|++||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence 3457788655 566664 56899999998874431 2224789999999999999999999
Q ss_pred CCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCCCCCeEEEEee
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPH 506 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~ 506 (1134)
+|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999999877666 6667 99999999998 34 789999999999999998776555 88999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+++ .++++|+.|+.+.|||....+.+..+..|...|.+++|+|-. ..||+|+. ..|++|++||..+|..+.....
T Consensus 311 ~d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 311 PDG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence 755 899999999999999998889999999999999999999954 56666654 5689999999999999988876
Q ss_pred ccCcceEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 586 FRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .|.++.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 55 6999999999987777 44778999999999999999987754 799999999999999999999999999866
Q ss_pred c
Q 001160 664 G 664 (1134)
Q Consensus 664 ~ 664 (1134)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=261.69 Aligned_cols=303 Identities=17% Similarity=0.248 Sum_probs=236.0
Q ss_pred cccceEEEEEecCCcceEEee--ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001160 771 AASKVVRLIYTNSGLSLLALA--SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
+...|.++..+|||..+++++ .|+.+++|+...--. ....++..-...+ ..+ ..| .+.|+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l-~~m--~~h-~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL-CTM--DDH-DGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh-eee--ccc-cCceeEEEE
Confidence 345689999999999999999 799999998642110 0011121100011 112 237 999999999
Q ss_pred ccCCCEEEEEe-CCeEEEEECCC------------------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMT------------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iw 909 (1134)
+|||++||+|+ |..|.||+... .++...+.+|.+.|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 99999999999 78899998872 246788999999999999999 99999999999999999
Q ss_pred EcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
+..+.+.++++++|.+.|..+.|.|-|+++||-+.|++|+||++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977755332 344444444444567899999999999
Q ss_pred EEE--EC---CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEcc--------C-----CC----EEEEEecCCcEEEEeC
Q 001160 990 LVV--HE---SQISVYDS-KLECSRSWSPKDALPAPISSAIYSC--------D-----GL----LVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 990 ~~~--~d---~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~--------d-----g~----~l~~~~~dg~I~vwd~ 1046 (1134)
++. -+ .++.|.+- +.+.-.. .-||.+++.+++|+| + .. .+|+|+.|++|.||..
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~---LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD---LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee---eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 993 22 35777766 2222222 246789999999997 1 11 5889999999999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+++..+..- ....++.++|+| ||..|..+|.||+|.+..+++.+
T Consensus 312 ~~~RPl~vi~~l---------f~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 312 ALPRPLFVIHNL---------FNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCchhhhhhh---------hcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 887777655421 124567899999 88999999999999999987665
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=247.53 Aligned_cols=262 Identities=17% Similarity=0.288 Sum_probs=228.4
Q ss_pred ccccCccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
.+|.|+...+....... +++.|+++.|+++|. +||+|..+|.|.|||..+.+.+.. +.+
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~ 257 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRG 257 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccC
Confidence 45677777777655555 489999999999998 789999999999999998877654 445
Q ss_pred -CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 -AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 -h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
|...|.+++|+ +..+.+|+.++.|..+|+...+.... .+.+|...|..+.|++|+. ++|+|+.|+.+.|||..
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGL 331 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCC
Confidence 99999999998 77899999999999999998776553 3779999999999999999 89999999999999998
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
...++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+-++++..
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-- 407 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG-- 407 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--
Confidence 8888999999999999999999876 5888875 69999999999766655443 5678999999999988886653
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
..+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 408 ~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 408 YSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3466899999999999999999998 7999999999999999999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=232.47 Aligned_cols=285 Identities=14% Similarity=0.226 Sum_probs=230.9
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecc---cc-ccccccccccccCCcCeEEEEEcCC
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDI---SA-ASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
.|.-+|.||+++||++ +.++++.+|+|.=|++.+|+.... +|.- .+ ...+..... .+|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 4888999999999998 578999999999999999986521 1111 11 111222222 489999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
|+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999998777 6889999999999977666 6899999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|.+|...... ..+-+|+.|+++++|++ ..+....+.++.+.+.|++|-.+ ..+++|+. +|.|.+|++.+.++
T Consensus 289 v~~IdaL~re--R~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSRE--RCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhccc--ceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 9999875543 45555569999999999 34556677888889999999665 56777764 78899999999998
Q ss_pred EEEecCccC-----------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCCCCCcceEEEccCC
Q 001160 580 KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 580 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
+.+....+. ..|++++..|..+.+++|+.+|.|++|-+..+ +++..+.. ...|++++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653321 16889999999999999999999999999877 34444443 3468999999999
Q ss_pred CEEEEE
Q 001160 645 SLLAVT 650 (1134)
Q Consensus 645 ~~l~~~ 650 (1134)
+.+++|
T Consensus 438 k~ivag 443 (479)
T KOG0299|consen 438 KRIVAG 443 (479)
T ss_pred CEEEEe
Confidence 966665
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=217.58 Aligned_cols=256 Identities=11% Similarity=0.216 Sum_probs=210.8
Q ss_pred cccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 334 ~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
...-.....+.-.+.+..|+||+.....+++++.||+++|||+..... +...++.|...|.+
T Consensus 48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~S 109 (311)
T KOG0277|consen 48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYS 109 (311)
T ss_pred CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEE
Confidence 334445666667899999999999988888899999999999543221 22347789999999
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 414 CVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 414 i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+.|++ ++..+++++.|++|++|+...++.+. ++.+|...|...+|+|.... ++++++.|+++++||++..-....
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE
Confidence 99999 56678888999999999998887666 89999999999999997766 899999999999999986433345
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLV 570 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~ 570 (1134)
+..|...|.++.|+...+ ..+++|+.|+.|+.||+++.+. +..+.+|+-.|..++|||... .|++++. |-+++
T Consensus 186 i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~r 260 (311)
T KOG0277|consen 186 IEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVR 260 (311)
T ss_pred EEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEE
Confidence 889999999999987654 7999999999999999998664 557888999999999999764 5667776 78899
Q ss_pred EEeCCCCe-eEEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEEC
Q 001160 571 EWNESEGA-IKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 571 ~wd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 617 (1134)
+||...+. .+.+...|.+ -+..+.|++ ++.++++++-|+.++||+.
T Consensus 261 iw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 99998544 5555665555 788888887 4578899999999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=236.99 Aligned_cols=247 Identities=19% Similarity=0.254 Sum_probs=210.7
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ ++++.+.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 56799999999999999999999999999999998766 333447778888999999999999 788999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+...+...++.||++.|+++.|.-.. ..+++|+.|.+|++||+....+..... ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999987654 459999999999999999866655433 23334444444 445556554
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceEEEc
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLRFN 641 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s 641 (1134)
|+.|++||.++..+..+...+. .|+++..++++..+.+++.|.++.+.|+++.+....+...+. ....+.+.||
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 6779999999999999988776 799999999999999999999999999999998888865432 2347899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001160 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|++.|+++|+.||.|+||++.++
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc
Confidence 99999999999999999999888
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=215.95 Aligned_cols=239 Identities=22% Similarity=0.265 Sum_probs=199.7
Q ss_pred CCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc--EEEEEeCCCcEEEEEcC
Q 001160 836 SKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~ 912 (1134)
..| .+.|+++|. ++.++|+|+ |.+|+|||+.+.+.+..+..|.+.|+++.|.+ ... .|++|++||.|.+|+..
T Consensus 40 ~aH-~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 40 SAH-AGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccc-ccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 448 999999998 689999999 99999999999999999999999999999998 543 78899999999999999
Q ss_pred CceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE
Q 001160 913 VDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
..+++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-.. .... ...+.+.|+|.|.+++++
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v---~~L~------~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV---LNLK------NKATLVSWSPQGDHFVVS 186 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee---eccC------CcceeeEEcCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999874322 2221 123569999999999999
Q ss_pred ECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 993 HESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 993 ~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
..+.|-+|.+ +......+.. +.++.++.|- ++.+|++|..|+.|.+||-+++...+.+..|. ..
T Consensus 187 ~~~~i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~----------~R 251 (362)
T KOG0294|consen 187 GRNKIDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE----------NR 251 (362)
T ss_pred eccEEEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch----------hh
Confidence 8999999999 4444343332 3567777774 56678999999999999999988888887663 33
Q ss_pred cEEEe-ecCCCCCEEEEEeCCCcEEEEecCCC
Q 001160 1072 PLVIA-PHPSEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1072 ~~~~~-~~~~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
+-++. |...++.+|+|+|.||.|++||+...
T Consensus 252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 33343 33337789999999999999999866
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=245.59 Aligned_cols=242 Identities=19% Similarity=0.237 Sum_probs=207.2
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCCcc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001160 413 RCVWG-PDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1134)
Q Consensus 413 ~i~~s-pdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~- 487 (1134)
.+..+ |.+++|.+||.||.|++|++...... .....++.|.+.|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 33344 46778999999999999998654331 11336778999999999999998 7999999999999999887
Q ss_pred -eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--ee--------Eec-CCCCcEEEEEECCCCCE
Q 001160 488 -RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RV--------DYD-APGNWCTMMAYSADGTR 555 (1134)
Q Consensus 488 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~--------~~~-~~~~~v~~~~~s~~~~~ 555 (1134)
-+..++..|.+.|.|+++... +...+++|+.|+.|.+||+.++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 577889999999999998422 338999999999999999997633 11 222 56678999999999988
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++|+. ++.|++||.++++.+..++||.+ .|.++..++||..++++|.||+|++||+...+++.++..|.. .|
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~V 258 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GV 258 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ce
Confidence 888876 56699999999999999999998 899999999999999999999999999999999999988755 59
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++..+|+-..+++|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=242.93 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=235.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
++..++.+.++|++|+.||.|++|++.......+. + ....+..|.++|+.++...+|+.|++++.|.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~------------~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPST------------P-YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCccc------------c-hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 55566555558899999999999998754432110 0 1112567999999999999999999999999
Q ss_pred eEEEEEcCCCCccceeeEEecccCCeeEEEE-ecCCCcEEEEEEcCCCcEEEEECCCCe--eeE--------Eec-CCCC
Q 001160 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAF-AHPNKQLCIVTCGDDKMIKVWDVVAGR--KQY--------TFE-GHEA 498 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~--------~~~-~h~~ 498 (1134)
+|++|+...+.. ....++..|.+.|.|+++ .++.. ++|+||-|+.|.+||+++|. .+. .+. |+..
T Consensus 96 TVK~W~~~~~~~-~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNT-FCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcc-hhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 999999988742 233367789999999999 66666 89999999999999999873 232 233 7889
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.|++++.++.+ ..+++|+..+.+++||.++.+....+.+|...|..+..++||..+++++. |++|++||+...+
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 99999987654 89999999999999999999999999999999999999999999999985 8899999999999
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 658 (1134)
++.++..|.+ .|.++..+|+-..+++|+.||.|+.=|+++......+-... .+|..+..+.+.+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCceeeecccccee
Confidence 9999999998 69999999999999999999999999999854333332222 36777777754455567788999999
Q ss_pred EECC
Q 001160 659 LANS 662 (1134)
Q Consensus 659 w~~~ 662 (1134)
|...
T Consensus 324 W~~~ 327 (735)
T KOG0308|consen 324 WKLE 327 (735)
T ss_pred cCCc
Confidence 9764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=247.01 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=196.6
Q ss_pred EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-
Q 001160 365 GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGE- 442 (1134)
Q Consensus 365 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~- 442 (1134)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888766543322 26789999999999996 79999999999999999986432
Q ss_pred c----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001160 443 L----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 443 ~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++++ .+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG--~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC--CEEEEEe
Confidence 1 122357789999999999999874 56899999999999999998887776 66789999998754 8999999
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEE-----EEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCc-ce
Q 001160 519 IDGKIKAWLYDYLGSRVDYDAPGNWCT-----MMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKR-SL 591 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~-~v 591 (1134)
.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..+++|++||++. ++++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 999999999999888888888876543 3345689999999887554456899999995 5666655443321 23
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
......++|.++++|+.|+.|++|++..+. +..+.......++.+++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 333334558888899999999999998764 3334333344577889999864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=218.46 Aligned_cols=333 Identities=12% Similarity=0.211 Sum_probs=250.8
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
..++.+.+|.+ .|..++.....+.+.+++.|.+.+||.++++.++.++.+|.+ .|+++.|++.+.++++++.|++..
T Consensus 139 ~lvre~~GHkD-GiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taH 215 (481)
T KOG0300|consen 139 RLVRELEGHKD-GIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAH 215 (481)
T ss_pred eehhhhccccc-ceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchH
Confidence 45567888888 788888777777888899999999999999999999998754 899999999999999999999999
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
||...-. ++....... . .. +....
T Consensus 216 IW~~av~------~~vP~~~a~-------------------------------~------------~h-------SsEeE 239 (481)
T KOG0300|consen 216 IWKAAVN------WEVPSNNAP-------------------------------S------------DH-------SSEEE 239 (481)
T ss_pred HHHHhhc------CcCCCCCCC-------------------------------C------------CC-------Cchhh
Confidence 9974322 100000000 0 00 00000
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
. -.+|. ..+-..-....||. +|++
T Consensus 240 ~--e~sDe--------------------------~~~d~d~~~~sD~~---------tiRv------------------- 263 (481)
T KOG0300|consen 240 E--EHSDE--------------------------HNRDTDSSEKSDGH---------TIRV------------------- 263 (481)
T ss_pred h--hcccc--------------------------cccccccccccCCc---------eeee-------------------
Confidence 0 00000 00000000011111 1221
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcE
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
....+.+ | ...|.+..|-..|+.+++++ |.+..+||++++..+..+.||....+.++-+| ..++
T Consensus 264 -----------Pl~~ltg--H-~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL 328 (481)
T KOG0300|consen 264 -----------PLMRLTG--H-RAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL 328 (481)
T ss_pred -----------eeeeeec--c-ccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence 1112344 8 89999999999999999999 99999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 897 IAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+++.+.|.+.++||.... ..+..|+||.+.|+++.|.-|. .+++++.|.+|++||+.+.... +....- ..
T Consensus 329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----lATIRt----dS 399 (481)
T KOG0300|consen 329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----LATIRT----DS 399 (481)
T ss_pred EEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----ceeeec----CC
Confidence 999999999999999843 4577899999999999998775 4789999999999999885532 111111 14
Q ss_pred CceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccC--CCCCCCCCeEEEEEccCCC--EEEEEecCCcEEEEeCCCc
Q 001160 976 GETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS--PKDALPAPISSAIYSCDGL--LVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~--~~~~h~~~v~~v~~s~dg~--~l~~~~~dg~I~vwd~~~~ 1049 (1134)
.+..++.+..+..+++- .++.|++||+++..+..+. ...+|..-|+|.+|+.+.- -|++++.|..+.=|+++..
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 67899999999999985 5678999999999888776 5578999999999986643 4889999999999998864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=249.46 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=203.5
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------ceeeEEecccCCeeEEEEec-CCCcEEEEEEcC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGD 475 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~ 475 (1134)
|-..|.....++|+..+++++.+..+..|+..++..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4455677777888777888888877778876554322 11234779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 476 DKMIKVWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 476 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
|++|++||+.++ .++..+.+|...|.+++|+|..+ .+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999998643 6999999999999999999888888888999999999
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCCCe-eE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMN-ML 623 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1134)
|+|+|++|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999874 888999999999999999988764556678999888888754 47999999998754 34
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.....+. ...+....|++++.+|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 3333322 23455677999999999887 4999999999877
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-27 Score=229.96 Aligned_cols=200 Identities=17% Similarity=0.258 Sum_probs=167.5
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.+.||.++|.|++=+|..-. .+++|+.||.|+|||+.+..++.+|+.|.+.|..+++.. ..+++++.|++|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46789999999999998733 799999999999999999999999999999999999865 5799999999999998
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCE-EEEE
Q 001160 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNR-FLAA 606 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~ 606 (1134)
++.. ....+ .....+..+.-+..+..+++||. .|.|||.....++..+.-..+ .|.++.|+|.... |+++
T Consensus 136 ~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceee-eccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 8753 22222 23445666777777888888864 399999999999999988777 8999999998855 5556
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.|+.|.+||++.+.++..+.... ..+.++|+|++-.+++++.|..++.||+...
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhh
Confidence 699999999999999988876543 3478999998888999999999999998654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=237.88 Aligned_cols=282 Identities=15% Similarity=0.294 Sum_probs=239.7
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE-E
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR-C 414 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-i 414 (1134)
++..+.+. |...|..+++.+.. .+++++.||++++|+-..++.+.+ +.+.+|.+.|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 45566666 89999999998887 467899999999999876655432 225678888888 8
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 415 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
++-+ ++-+|++|+.|++|.+|...+...+. .|.+|...|.++....++. +++||.|.++++|. .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999987766 8899999999999877774 89999999999997 56777889
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.+|+..|++++..|. +.++|||.|++|++|.- ++....+.+|...|..+++-+++.++ +|+ +|+.|++|+
T Consensus 137 ~gH~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-Scs----NDg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-SCS----NDGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-eec----CCceEEEEe
Confidence 999999999998776 48999999999999954 67788999999999999998876554 554 489999999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+ +|+.+.++.+|.. -+.+++...++..++++|+|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|++|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccC
Confidence 8 8999999999998 89999988888999999999999999986 77777776643 688999888886 6778999
Q ss_pred CcEEEEECC
Q 001160 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
|.||||...
T Consensus 280 G~VrVfT~~ 288 (745)
T KOG0301|consen 280 GRVRVFTVD 288 (745)
T ss_pred ceEEEEEec
Confidence 999999876
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=228.58 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=214.7
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcccee--------------eEE-ecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH--------------LEI-DAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~~-~~h~~~v~~l~~s~d~~~~ 468 (1134)
+..|.-+|.|++++||+++.++++.+++|.=|++.++...+-. ..- .+|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999887643100 011 27888999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
+|++|+.|..|.|||..+.+.++.+++|.+.|.+++|-... ..+++++.|++|++|+++......++.+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999997655 7899999999999999998888889999999999999
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
....++.+-+++. |.++++|++.. +....|.++.. .+.|++|-. ...+++|+++|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888888777765 88899999953 33345666655 899999875 46899999999999999999998877643
Q ss_pred CCC----------CCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 629 DGG----------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 629 ~~~----------~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
..+ ...|++++..|...++|+|+.+|.|++|-+.++.
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 211 1268899999999999999999999999998873
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=222.18 Aligned_cols=284 Identities=15% Similarity=0.207 Sum_probs=244.5
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..++++...|... .+.+|+.|..+.++|...++.+.. ++||.-.|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 3788888888844 678999999999999999887764 88999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC--CCCCeEEEE
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVC 504 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~ 504 (1134)
+.|..|+||......... ....|..+|+.+...|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 5668999999999999999 999999999999999999998876543 234589999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|+|++ .+|.+|..|+.+++||+.+......+.+|.++|..++|+.+|-+|++++. |+.|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 99865 89999999999999999999999999999999999999999999999984 6679999999988888888
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
......+.+++|.+.|.+++.+|.|=.|++++-.+.........+.+....+.+.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77666799999999999999998887777777554443333333333446789999999999999999999988754
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=249.83 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=209.2
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56678888887 67899999999999999999876652 3889999999999987454 899999999999999999
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
|++.+++.+|...|.++...+ .++++|+.|.+|++|++.++..+..+.+|..+|.++..+ +.++++++. |
T Consensus 281 g~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 999999999999999997643 688899999999999999999999999999999999998 789999986 7
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eeEEEEeCCCCCCCcceEEEccCCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-NMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
+.|.+||+.+++++.++.+|.. .|.++.+.+. +.+++|+.|+.|++||+.++ +++.++..|.. -+..+. ..++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--cccc
Confidence 7899999999999999999888 8999988765 89999999999999999999 89999987754 344333 4578
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001160 646 LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++++.|++|++||.+++
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred eeEeccccccEEEeecccC
Confidence 9999999999999998877
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=198.38 Aligned_cols=307 Identities=13% Similarity=0.090 Sum_probs=225.9
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
....|.+++|.|.|.+.+++++..+.+|...+.......+..... ++.....+...|+.+.|+|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~-----------~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK-----------QPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc-----------CCCeEEeeeccccCccEEEEEecC
Confidence 456789999999999999999999999876543211111111111 000000111113399999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE-----EEEecCCCCceEEEEEcCC---CCcEEEEEe-CCCcEEEEEcCCceEEEEe
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQ---DNNIIAIGM-EDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---~~~~lasg~-~dg~i~iwd~~~~~~~~~l 920 (1134)
+|.++|+|+ |.+|++..+....+ -..|.-|.+.|..++|-.+ ++.+|++++ .|..|++-|...|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 89999876654322 2346679999999999642 567888876 4778999999999999999
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEE
Q 001160 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISV 999 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~v 999 (1134)
.+|.+.|.++- +=++-++++|+.|.+|++||+.-..++...-.....+. .....|..++..|.|++|+++ .|....+
T Consensus 180 sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g-lessavaav~vdpsgrll~sg~~dssc~l 257 (350)
T KOG0641|consen 180 SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG-LESSAVAAVAVDPSGRLLASGHADSSCML 257 (350)
T ss_pred cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC-cccceeEEEEECCCcceeeeccCCCceEE
Confidence 99999998874 45788999999999999999987654332111111111 112578999999999999997 5788999
Q ss_pred EeCCCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeec
Q 001160 1000 YDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1000 wd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1134)
||+.+. .+..+ +.|...|.++.|||...||++++.|..|++-|+. |.+..++.... ...|...++.+.|+
T Consensus 258 ydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~v-----v~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 258 YDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMV-----VAEHKDKAIQCRWH 328 (350)
T ss_pred EEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEE-----EEeccCceEEEEec
Confidence 999544 44444 4569999999999999999999999999999998 44444443211 11344678889999
Q ss_pred CCCCCEEEEEeCCCcEEEEecC
Q 001160 1079 PSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
|.+ --+++.+.|.++.+|-++
T Consensus 329 ~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred Ccc-ceeeeccCcceEEEeccC
Confidence 965 788899999999999764
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=246.28 Aligned_cols=273 Identities=18% Similarity=0.260 Sum_probs=209.4
Q ss_pred ccccceEEEEEecCCcceEEeeccCeeEEeecccccC------C------------------CCC-Cccccc--------
Q 001160 770 IAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER------N------------------PSG-KATANV-------- 816 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~------~------------------~~~-~~~~~~-------- 816 (1134)
.|.+.|.++.||+||++|+++|.|+.|+||.+...+. . ... +.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5899999999999999999999999999999876110 0 000 000000
Q ss_pred Cc-ccccCCCCCc---cccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 817 AP-QLWQPPSGTL---MTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 817 ~~-~~w~~~~~~~---~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
.. .+.+...... ....+.| | ...|.++.||.++ +|++++ |.+|++|++...++++.|. |..-|||++|+|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~G--H-t~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKG--H-TADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CccccCCCccccccccchhhhhc--c-chhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 00 0111111111 1112444 8 9999999999875 566666 9999999999999999998 999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ 971 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~ 971 (1134)
-|.+++++|+-||.||||++...+.+.-...+ +-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+..
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999888766554444 78999999999999999999999999999988876666666555544
Q ss_pred CCCcCceEEEECCCCc--EEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 972 SPLVGETKVQFHNDQT--HLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 972 ~~~~~v~~~~fspdg~--~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
.....|+.+.|.|... .|+++.|..|+|||. +...+..+..... ...-....|+.||++|++++.|..|++|+...
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4435699999987654 788899999999999 4444444443322 34456788999999999999999999999854
Q ss_pred c
Q 001160 1049 L 1049 (1134)
Q Consensus 1049 ~ 1049 (1134)
.
T Consensus 578 ~ 578 (712)
T KOG0283|consen 578 F 578 (712)
T ss_pred C
Confidence 3
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=210.90 Aligned_cols=252 Identities=19% Similarity=0.244 Sum_probs=187.4
Q ss_pred ceEEEEEecCCcceEEee-ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 774 KVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+.++|+||.+.++... +...+++|.+...+. |...... .-||- -. + ...| .-.+..+-...++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~~--v~~D~--~~-----f-~~kh-~v~~i~iGiA~~~ 199 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHHF--VHIDN--LE-----F-ERKH-QVDIINIGIAGNA 199 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCccc--ccccc--cc-----c-chhc-ccceEEEeecCCc
Confidence 457889999988776554 457899998754322 2221110 01110 00 1 1125 7778888888899
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC---Cc-----eEEEEecCc
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR---VD-----EVKTKLKGH 923 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~---~~-----~~~~~l~~h 923 (1134)
++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++.---|++|++- .| ..+..|+||
T Consensus 200 k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH 277 (420)
T KOG2096|consen 200 KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH 277 (420)
T ss_pred eEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc
Confidence 9999999 8999999998 899999887777788899999 99999999999999999864 22 234568999
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc--cceeeecC--CCCCCCCcCceEEEECCCCcEEEEEECCeEEE
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL--KSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~--~~~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~v 999 (1134)
...|..++||++.+.++|++.||+++|||.+-.-.. ....++.. .-+.. ......+.++|.|+.||++....+.+
T Consensus 278 ~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~ 356 (420)
T KOG2096|consen 278 QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKV 356 (420)
T ss_pred hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEE
Confidence 999999999999999999999999999998632111 11111111 11111 13456999999999999999999999
Q ss_pred EeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 1000 YDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 1000 wd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
|.. +++....+. ..|...|++++|++||+++++++ |..++++.
T Consensus 357 ~~se~g~~~~~~e--~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 357 FASEDGKDYPELE--DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEcccCccchhHH--HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 998 555554443 45689999999999999999986 88888886
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=217.46 Aligned_cols=297 Identities=15% Similarity=0.211 Sum_probs=245.2
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+++.+. |.+.||.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 44556666 999999999987776 899999999999999999999876 789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEc------CC------------------------------CCcc-ceeeEEecccCCeeE
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTY------NP------------------------------TGEL-RQHLEIDAHVGGVND 458 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~------~~------------------------------~~~~-~~~~~~~~h~~~v~~ 458 (1134)
|++.+.++++++.|++..||.. .. +..+ .+...|.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0001 134567899999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEe
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY 537 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~ 537 (1134)
..|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+|.. .++++.+.|.+.++||++.. .....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 79999999999999999999999999999999999998876 78999999999999999843 335588
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC-eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
.+|...|+++.|.-+. .+++++. |.+|++||+++. .++.++.... +++.++.+..++.++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSD----DrTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSD----DRTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCC----CceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999998765 5566653 888999999875 4666666544 788899998888888888999999999
Q ss_pred CCCCeeEEEE--eCCCCCCCcceEEEccCC--CEEEEEeCCCcEEEEECCCc
Q 001160 617 MDNMNMLTTV--DADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+...++.... ...++...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765533322 233455678999998654 34788999999999998654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=227.91 Aligned_cols=287 Identities=13% Similarity=0.188 Sum_probs=232.8
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
+..|. |.+.|.|++=+|..-..+|+|+.||.|+|||+.+..+..+ +..|.+.|..+++..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc
Confidence 33444 8899999999999855789999999999999999887765 678999999999987
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
..+++++.|.+|+.|.++.. .++ ++. ....+..+.-+..+. .++|||. .|.|||.....++..+.--..
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred --cceEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCC
Confidence 77889999999999998873 222 332 234566666666566 7899986 489999999999999988888
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G 577 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~ 577 (1134)
.|.++.|+|... ..|++|+.|+.|.+||++....+..... ...-+.++|+|.+-.++++. .|..++.+|++. .
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLS 262 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhc
Confidence 999999999865 6889999999999999998877654432 23456889999666666664 488899999986 4
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.++..+.+|.. .|..+.|+|.|+.+++||.|.+|+||.+..+..-..+-. .....|.++.||.|.+++++|++|+.|+
T Consensus 263 ~p~~v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCccee
Confidence 57778888877 899999999999999999999999999987764443321 1124689999999999999999999999
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+|.....
T Consensus 341 lWka~As 347 (433)
T KOG0268|consen 341 LWKAKAS 347 (433)
T ss_pred eeecchh
Confidence 9987544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=229.11 Aligned_cols=303 Identities=17% Similarity=0.227 Sum_probs=234.8
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
|+.+...++ |...|.++++.|.|.+ +++|+.|-+|++||++....-.. .|+ .+.......|.++
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINSL 220 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh-------------ccCccccccccee
Confidence 445555566 6789999999999985 78999999999999986543221 121 1234456689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCcc---------ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGEL---------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~---------~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+||+.|..|++.+....++|+|-++.+.. +....-+||...++|.+|+|+.+. .++|++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecC
Confidence 99999999999999999999997754332 223344689999999999999988 79999999999999998
Q ss_pred CCee-eEEec-----CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCC--cEEEEEECCCCC
Q 001160 486 AGRK-QYTFE-----GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGN--WCTMMAYSADGT 554 (1134)
Q Consensus 486 ~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~~~~ 554 (1134)
.-+. +..++ +..-+++.++|++++ ..|++|+.||.|.+|+....... ..-..|.. .|+|++||+||+
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 6442 23332 334578889997754 88999999999999998654332 23345555 899999999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCC-eeEEEecCccC-cceEEEEEeCCCCEEEEEe------CCCeEEEEECCCCeeEEEE
Q 001160 555 RLFSCGTSKEGESHLVEWNESEG-AIKRTYSGFRK-RSLGVVQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 626 (1134)
+|++-+. |.++++||++.. +++....+-.. ..-+.++|+|+.+.|++|. ..|.+.+||..+...+..+
T Consensus 378 ~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 378 YLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 9999874 788999999864 45555444322 1345688999999999975 4578999999999999998
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
... ...|..+.|+|.-+.|.+|+.||++++|--.
T Consensus 454 ~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 454 DIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred cCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence 866 3478899999998999999999999998543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=219.64 Aligned_cols=281 Identities=16% Similarity=0.269 Sum_probs=231.1
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1134)
.+.++...+....+++|+.|..+.++|...+ +.+..+.||
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~Gh--------------------------------------- 260 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKGH--------------------------------------- 260 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccCc---------------------------------------
Confidence 4566777776678999999999999999888 777777664
Q ss_pred CCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc
Q 001160 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 793 (1134)
...|..+.++++...+++++.|
T Consensus 261 ----------------------------------------------------------~kki~~v~~~~~~~~v~~aSad 282 (506)
T KOG0289|consen 261 ----------------------------------------------------------TKKITSVKFHKDLDTVITASAD 282 (506)
T ss_pred ----------------------------------------------------------ceEEEEEEeccchhheeecCCc
Confidence 4567889999999999999999
Q ss_pred CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCe
Q 001160 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK 872 (1134)
Q Consensus 794 g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~ 872 (1134)
..|+||....... ... . ..| ..+|+.+..+|.|.|+++++ ||++.+.|+.++.
T Consensus 283 ~~i~vws~~~~s~-------------------~~~----~--~~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 283 EIIRVWSVPLSSE-------------------PTS----S--RPH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ceEEeeccccccC-------------------ccc----c--ccc-cccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 9999997643110 001 1 127 99999999999999999999 8999999999999
Q ss_pred EEEEecCC--CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEE
Q 001160 873 VMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM 950 (1134)
Q Consensus 873 ~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i 950 (1134)
.+...... .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|.++|.+++|+.+|-+||++..|+.|++
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 88776642 34589999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCC
Q 001160 951 WSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 951 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg 1029 (1134)
||+..-+..+...+... .++..+.|.+.|++|+++ .+=+|++++-..+..........|.+..+.+.|..+.
T Consensus 416 wDLRKl~n~kt~~l~~~-------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDEK-------KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EEehhhcccceeecccc-------ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 99998765444333322 258899999999999995 4445555554444444444456678899999999999
Q ss_pred CEEEEEecCCcEEEEeC
Q 001160 1030 LLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~ 1046 (1134)
+++++++.|..++++.+
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999888764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=209.48 Aligned_cols=249 Identities=16% Similarity=0.182 Sum_probs=195.6
Q ss_pred ccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 405 ~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
....+.|.+++||| ...++++++.||+||+|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678899999999 566777889999999999987433322 24557999999999999998 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++ +..+..|.++|..+.|.+......|++||.|++|+.||.+.......+...+ .++++.. -...++.+..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677789999999999887766799999999999999999888877766544 3444433 2234555543
Q ss_pred CCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCC-------CC
Q 001160 564 EGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGG-------LP 633 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1134)
+..|.+|+++.+.. .+......+-.++|++..++....+.|+-+|.+.+..++.+ +.-.++..|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 66799999976543 23333333446899999999988899999999999999886 33344555542 23
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999899999999999999997654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=209.35 Aligned_cols=278 Identities=17% Similarity=0.220 Sum_probs=220.0
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001160 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~ 441 (1134)
+++|++...|.=+++.-...-..... .....+...+..|.++|+++|. +|.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~-------~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSV-------KPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccccccc-------ceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh
Confidence 45677777766666543220000000 0011223346789999999999 68999999999999999999887
Q ss_pred ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC
Q 001160 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 442 ~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
.+. .+-.|.+.|+++.|.++-..-.|++|++||.|.+|+...-.++.++++|.+.|+.++++|++ .+-++.+.|+
T Consensus 75 qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~ 149 (362)
T KOG0294|consen 75 QLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQ 149 (362)
T ss_pred hhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCc
Confidence 666 66689999999999987642268999999999999999999999999999999999999987 8999999999
Q ss_pred eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC
Q 001160 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
.+++||+-.++.-........ -+.+.|+|.|.+++..+ ...|-+|.+.+......+.... .+.|+.|. ++.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-----~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~ 220 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-----RNKIDIYQLDNASVFREIENPK--RILCATFL-DGS 220 (362)
T ss_pred eeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe-----ccEEEEEecccHhHhhhhhccc--cceeeeec-CCc
Confidence 999999998877665554333 33499999999988876 4459999998877666655442 46666665 567
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--ccCCCEEEEEeCCCcEEEEECCCc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++|++|+.|.+||.++..+...+..|. ..|..+.+ .|++.+|+++++||.|+|||+...
T Consensus 221 ~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 89999999999999999998888888774 47888874 457889999999999999999765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=207.75 Aligned_cols=269 Identities=19% Similarity=0.269 Sum_probs=217.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+.|+.+.|+|.+..||+ ++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 3578999999999886554 6689999999999875432 234899999999987 56788
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++... .+++||.|++|++||.+....+..+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999998654 4567999999999998776 79999999999999988765555554 334788886
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC----e
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG----A 578 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~----~ 578 (1134)
. .|+.|+.|+.|..+.+||+++........ .-.-.+.|+++.|++.-.++++. +|.|.+=.+... +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 5 33789999999999999999876655222 22347899999998887887775 667777666554 4
Q ss_pred eEEEecCccCc--------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 579 IKRTYSGFRKR--------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 579 ~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
....|+.|... +|++++|+|-...|++||.||.|.+||+.+.+.+..+... ...|..++|+.||..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 45566666432 7899999999999999999999999999998888877644 3468999999999999998
Q ss_pred eC
Q 001160 651 TS 652 (1134)
Q Consensus 651 ~~ 652 (1134)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 76
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-21 Score=213.00 Aligned_cols=276 Identities=15% Similarity=0.208 Sum_probs=224.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
|...-+.++|.|+|. ++.+++.||.|++|+...-. ...+ +.-++..|.+++- ++.+|
T Consensus 12 ht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--cccce
Confidence 677899999999999 67788889999999987652 2211 2226777877776 55599
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.+++|.+|....++.-. .+....-++.+++|+.+|+ ++|.||+|-.|++-++.+......+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999886543 3334567899999999999 89999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.++|.+ .+|++.+.||.|++||++++.....+..- ...+..++|+|+|..+++.+. ++.|.+|+..
T Consensus 145 ~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 998866 89999999999999999987766544332 335678999999777666654 7789999999
Q ss_pred CCeeEEEecCccCc-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
++.....+...... .+.+++|+|+|+||++++.||.|.|||+++.+. |.....|.+++|.|+...+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 99988888764432 488999999999999999999999999998222 33445799999999988776666666
Q ss_pred cEEEE
Q 001160 655 GIKIL 659 (1134)
Q Consensus 655 ~i~iw 659 (1134)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-22 Score=220.84 Aligned_cols=509 Identities=13% Similarity=0.179 Sum_probs=328.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCc-EEEEEEcCCCcEEEEECCCCeeeE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQ-LCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
.-.||+|+++++.+. +..|.||...++.++. .+.+|..++..+.+.|.... .++.+++.||.|++||...+..++
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 346899999988874 4569999999999887 78899999999999987764 478899999999999999999988
Q ss_pred EecCCCCCeEEEEeec------------cCCccEEEEEec--CCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEE
Q 001160 492 TFEGHEAPVYSVCPHH------------KESIQFIFSTAI--DGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~------------~~~~~~l~s~~~--d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++..+ .++.++.+.+ ..+-..+.+.+. -++++-+.+.+... ...+......-.++.+++.|.+.
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFK 175 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEE
Confidence 87643 3333333211 111111111111 11111111111100 00011111114577888888887
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeE---EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeeEEEEeCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIK---RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~ 631 (1134)
..+. +..+.+|+..++... +....++...+++.+++|+++++++|..||.|.+|.--. ......-..|.|
T Consensus 176 ~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 176 GIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred EEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 7765 445899998875511 112223333578999999999999999999999997543 222222223444
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCC
Q 001160 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLE 711 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1134)
...|.+++|+++|.+|++|+..|.+.+|.+.++++ +.+
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfL---------------------------------------- 288 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFL---------------------------------------- 288 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCc--ccc----------------------------------------
Confidence 56899999999999999999999999999988831 111
Q ss_pred CCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEee
Q 001160 712 RPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA 791 (1134)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 791 (1134)
|. -.+.|..+.+|||+.+.....
T Consensus 289 -------------------------------------------------------PR--Lgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 289 -------------------------------------------------------PR--LGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred -------------------------------------------------------cc--cCCeeEEEEEcCCCCeEEEEe
Confidence 00 246788999999999999999
Q ss_pred ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCC
Q 001160 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT 870 (1134)
Q Consensus 792 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~ 870 (1134)
.|+.|.+-......... + +.-..+.+... + .+. .+-.+.++++|.-+.++..+ .|.|.+||+.+
T Consensus 312 ~DNqI~li~~~dl~~k~------t--Isgi~~~~~~~-----k-~~~-~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 312 EDNQIHLIKASDLEIKS------T--ISGIKPPTPST-----K-TRP-QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred cCceEEEEeccchhhhh------h--ccCccCCCccc-----c-ccc-cccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 99999987654321110 0 00000000000 0 012 55567889999555555555 89999999988
Q ss_pred CeEEEEecC-----CC------CceEEEEEcCCCCcEEEEEe--------CCC--cEEEEEcCCce----EEE-EecCcc
Q 001160 871 FKVMTMFMS-----PP------PAATFLAFHPQDNNIIAIGM--------EDS--SVQIYNVRVDE----VKT-KLKGHQ 924 (1134)
Q Consensus 871 ~~~~~~~~~-----~~------~~i~~l~~s~~~~~~lasg~--------~dg--~i~iwd~~~~~----~~~-~l~~h~ 924 (1134)
.+.+..+.. +. -.+++++.+. .|.+++|+- .|| .+++|-..... +.. ....|.
T Consensus 377 d~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 377 DSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred cceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 776655431 22 2478888888 699999864 333 57788765432 222 235788
Q ss_pred cceEEEEEecC-CC-EEEEEcCCCcEEEEeCCCcccccc-----eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeE
Q 001160 925 NRITGLAFSPT-LN-ALVSSGADAQLCMWSIDKWEKLKS-----RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 925 ~~i~~l~~s~d-~~-~l~s~~~D~~i~iWd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
..+.+.++.+. .. +++|+|.||.++||-+...+.+.. .+.....-|. .++..++|+.||..|+++.++.|
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~I 532 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTI 532 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEE
Confidence 87777776543 22 799999999999999844332111 1111111122 57899999999999999999999
Q ss_pred EEEeCCC-cceeccCCCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEeCCCcceee
Q 001160 998 SVYDSKL-ECSRSWSPKDALPAPISSAIYSC----DGLLVYAGFCDGAIGVFDAETLRFRC 1053 (1134)
Q Consensus 998 ~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~----dg~~l~~~~~dg~I~vwd~~~~~~~~ 1053 (1134)
.+||... ..+....... ..++..+.|.. ++. +.......+.+|++-+..+.-
T Consensus 533 tiwd~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 533 TIWDYDTKNELLCTEGSR--NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred EEecCCChhhhhcccccc--ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheec
Confidence 9999933 3222211111 33444444433 333 333467889999998877766
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=230.98 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=223.8
Q ss_pred cccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE-EE
Q 001160 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~-~~ 847 (1134)
.+|...|..+++.++. .+++++.||++++|+-...+ ..-...+.+ | .+-|.. ++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~---------------------~l~~~~~~~--~-~g~i~~~i~ 65 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQ---------------------YLETHAFEG--P-KGFIANSIC 65 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCcc---------------------cccceeccc--C-cceeeccce
Confidence 4588888888877665 58999999999999732111 111112222 5 666666 78
Q ss_pred ecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCccc
Q 001160 848 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1134)
Q Consensus 848 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 925 (1134)
|.+ |+-.+++|+ |.+|.+|...+..+...+.+|...|.|++.-. ++. +++|++|.++++|-. +++...+.+|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a 141 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA 141 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence 875 555688888 99999999999999999999999999999876 565 889999999999964 677788999999
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCc
Q 001160 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~ 1005 (1134)
.|+++++-|++ .++|||.|.+|++|.-.+ .++.+.||. +-|+.+++-+++.+|-++.||.|++|++++.
T Consensus 142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch---hheeeeEEecCCCeEeecCCceEEEEeccCc
Confidence 99999999988 789999999999998754 567788888 5799999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
++..+ ++|..-|.+++...++..++++++|+++++|+.. ++...|... + ...-++.+.+ +| -|
T Consensus 211 ~l~~~---~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------t--tsiWsa~~L~-Ng-DI 273 (745)
T KOG0301|consen 211 VLLEM---HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------T--TSIWSAKVLL-NG-DI 273 (745)
T ss_pred eeeee---eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------c--cceEEEEEee-CC-CE
Confidence 98775 6779999999999999999999999999999987 666666533 1 2333555555 33 57
Q ss_pred EEEeCCCcEEEEecC
Q 001160 1086 ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1086 ~s~~~Dg~v~vW~~~ 1100 (1134)
++|++||.||||...
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 789999999999876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=206.44 Aligned_cols=220 Identities=13% Similarity=0.163 Sum_probs=156.1
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE-----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..|++|.+.|++++||.||++||+++.|+.|++|+++.-.. ++...+ -+--+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcce-EEEEEccC
Confidence 34889999999999999999999999999999999986322 222111 123578899999886 56666677
Q ss_pred CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 477 KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
.++++|-+...+. ..+.-|.-++-.+.| . ..|...+..+-...+++++
T Consensus 155 ~~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~--------~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 155 NKLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------E--------RKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred CEEEEEEeeeccc-CCCCccccccccccc-----------------------c--------hhcccceEEEeecCCceEE
Confidence 7888887543221 111111111111111 0 1133345556666778888
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC---CCe---eEEEEeCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD---NMN---MLTTVDADG 630 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~~~~~~~~~ 630 (1134)
++++. +..|.+|+++ |+.+..+..... .-...+.+|+|+++++++..-.|++|.+- .|. ....+...+
T Consensus 203 msas~----dt~i~lw~lk-Gq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 203 MSASL----DTKICLWDLK-GQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred EEecC----CCcEEEEecC-Cceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 88875 6669999988 888887776554 45568899999999999988899999863 222 233444455
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+...|..++|+++...+++.+.||+++|||.+-.
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 5778999999999999999999999999997543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=220.56 Aligned_cols=265 Identities=14% Similarity=0.249 Sum_probs=216.0
Q ss_pred EEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
....+.|.+.|+.+.+-|....++|+++..+.|.|||+.+..-..... ....+...|.+|...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~---------~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS---------GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc---------ccCCCceEEEeeccccccccccc
Confidence 345566999999999999999999999999999999997654332100 01122334789999888999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC--CCeeeE
Q 001160 419 DG-LMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV--AGRKQY 491 (1134)
Q Consensus 419 dg-~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~--~~~~~~ 491 (1134)
.. -.|++++.|++|++||+..... +.....+.+|...|..++|++-... +++++++|+.+.|||++ +.++.+
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 54 4889999999999999986544 5566678899999999999998776 79999999999999999 566677
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
...+|.+.|+|++|+|.. +..||+||.|++|.+||+++... ...+.+|...|..+.|+|....+++.+. .|+.+.
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~ 342 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLN 342 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEE
Confidence 888999999999999986 48999999999999999998665 5688999999999999998776554432 488999
Q ss_pred EEeCCCC--------------eeEEEecCccCcceEEEEEeCCCCEEE-EEeCCCeEEEEECC
Q 001160 571 EWNESEG--------------AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMD 618 (1134)
Q Consensus 571 ~wd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 618 (1134)
+||+..- +++..-.||.. .|..+.|+|+..+++ +.++|+.+.||.+.
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9998642 23355567766 799999999997755 57899999999986
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=235.89 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=182.4
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe--------eeEEecCC
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR--------KQYTFEGH 496 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~--------~~~~~~~h 496 (1134)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5668889999987653 33478899999999999997 55 89999999999999997642 34567899
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
...|.+++|+|... .++++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998752 456899999999999999888766665 4568999999999999998864 77899999999
Q ss_pred CeeEEEecCccCcc----eEEEEEeCCCCEEEEEeCCC----eEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEE
Q 001160 577 GAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDEF----QIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l 647 (1134)
++.+.++.+|.+.. +....|++++.+++++|.|+ .|++||+++ ++++..+..+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999987621 22234568999999988664 799999995 6677666555443333333445568899
Q ss_pred EEEeCCCcEEEEECCCc
Q 001160 648 AVTTSDNGIKILANSDG 664 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1134)
++|+.|++|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-22 Score=221.11 Aligned_cols=511 Identities=15% Similarity=0.176 Sum_probs=327.1
Q ss_pred eEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCc-cEEEEEecCCeEEEEEccCCCcee
Q 001160 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-QFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 457 ~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
....|++|++ .++.+. +..|.|+...+|.++..+.+|..++..+.+.+.... .++++++.||.|++||...+....
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457899998 444333 568999999999999999999999999999887764 678899999999999999888777
Q ss_pred EecCCCCcEEEEEECC---CCCEEEEEe-eC--------CCCCCcEEEEeCCCC--eeEEEecCccCcceEEEEEeCCCC
Q 001160 536 DYDAPGNWCTMMAYSA---DGTRLFSCG-TS--------KEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~---~~~~l~~~~-~~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 601 (1134)
.+..+.. +..+.+.| +-...+..+ .+ .+..++.+-+.+.+- ........+. .-.++.+++.|.
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~ge 173 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSGE 173 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCce
Confidence 6665433 22332222 111111111 00 011111111111110 0011111111 134577888776
Q ss_pred EEEEEeCCCeEEEEECCCCeeEEEE-e-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLTTV-D-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
+.... .+..+.+|+..++...... . ...|.-.+++.++||.++++|+|..||.|.+|.--.. ....
T Consensus 174 ~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~---- 241 (792)
T KOG1963|consen 174 FKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDS---- 241 (792)
T ss_pred EEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------cccc----
Confidence 65555 4557889998875511111 1 1122334789999999999999999999999974321 0000
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
...++.-|
T Consensus 242 ---------------------------------------------------------------~t~t~lHW--------- 249 (792)
T KOG1963|consen 242 ---------------------------------------------------------------ETCTLLHW--------- 249 (792)
T ss_pred ---------------------------------------------------------------ccceEEEe---------
Confidence 00122222
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
|...|.+++|+++|.+|++||..|.+.+|.+.+.+. ..++. -
T Consensus 250 -----------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k------------------------qfLPR--L- 291 (792)
T KOG1963|consen 250 -----------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK------------------------QFLPR--L- 291 (792)
T ss_pred -----------cccccceeEEecCCceEeecccceEEEEEeecCCCc------------------------ccccc--c-
Confidence 677899999999999999999999999997654221 11222 2
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCC-----------CCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP-----------PPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
..+|..+.+|||+.+.+..- |+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|+
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence 78899999999999988886 999999998777665555442 22367789999 777888889999999
Q ss_pred EEEcCCceEEEEec-----------CcccceEEEEEecCCCEEEEEc--------CC--CcEEEEeCCCcccccceeeec
Q 001160 908 IYNVRVDEVKTKLK-----------GHQNRITGLAFSPTLNALVSSG--------AD--AQLCMWSIDKWEKLKSRFIQA 966 (1134)
Q Consensus 908 iwd~~~~~~~~~l~-----------~h~~~i~~l~~s~d~~~l~s~~--------~D--~~i~iWd~~~~~~~~~~~~~~ 966 (1134)
+||+-+.+.+..+. .+.-.+++++.+-.|.+++|.- .| -.+++|-......--......
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99998876655442 2334588888888999999864 23 357899876654322222222
Q ss_pred CCCCCCCCcCceEEEECCCCc-EEEE-EECCeEEEEeCCCcc-e-------eccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 967 PAGRQSPLVGETKVQFHNDQT-HLLV-VHESQISVYDSKLEC-S-------RSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~-~l~~-~~d~~v~vwd~~~~~-~-------~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
...|.. ..+..+.+++... .+++ +.|+.+++|-.+... + ........|..++++.+||.||..|+ ++
T Consensus 451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s 527 (792)
T KOG1963|consen 451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VS 527 (792)
T ss_pred ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-Ee
Confidence 233321 2334444444444 5666 589999999872111 1 01112234789999999999998665 55
Q ss_pred cCCcEEEEeCCC-cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCC
Q 001160 1037 CDGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1108 (1134)
Q Consensus 1037 ~dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1108 (1134)
.|++|.+||..+ .++.+.......... +.. -.+-.+.+ ..+.....+.+.+|++.+....|..
T Consensus 528 ~~~~Itiwd~~~~~~l~~~~~~~~~~~~----~~~---~~~~~~~~--~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 528 FDDTITIWDYDTKNELLCTEGSRNWPIA----ELL---FTAQTQND--GALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cCCEEEEecCCChhhhhccccccccchH----hHh---hhcccccc--cceeeccCceEehHhhhhhheecch
Confidence 799999999999 555555543221111 000 01111213 3334445678999999998888844
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=220.74 Aligned_cols=293 Identities=14% Similarity=0.212 Sum_probs=234.7
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+.+.+|.|.+-|.++++|...++ +.+|+ .|.|+|||+....... . ..+.. ......-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--P-----------vsqLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--P-----------VSQLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--c-----------ccccc-ccCcccceeeeEec
Confidence 45778889999999999999984 67776 6899999997542110 0 00110 11245679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.+++..||.|.|||+.+...++.|+||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987543 22224444445678899999999 88999999999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
+.+.||.++. ||..|.+|+.|++||.||++.+....... ....|.++..+|++.+++.+-. ++.+.+.... +
T Consensus 552 DGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-K 623 (705)
T ss_pred CCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-C
Confidence 9999999965 55899999999999999999877665433 3457999999999999999874 5556666543 3
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.....+..|.. .|.++.|.+.|+++++.|.|..+..|...-|..+...... ..|.++.+|.|.+++++|+.|....
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 33444555555 8999999999999999999999999999888877666533 4789999999999999999998888
Q ss_pred EEEC
Q 001160 658 ILAN 661 (1134)
Q Consensus 658 iw~~ 661 (1134)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=201.59 Aligned_cols=252 Identities=20% Similarity=0.285 Sum_probs=209.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~i 481 (1134)
-..|.+.|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|.. -|. +||+++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999988999999999999999999998877667779999999999999976 677 9999999999999
Q ss_pred EECCCCee--eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCC---C
Q 001160 482 WDVVAGRK--QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD---G 553 (1134)
Q Consensus 482 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~---~ 553 (1134)
|.-++|+- .+.+..|+..|++++|.|.+-|-.|++++.||.|.+.++++... ......|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99777753 34677899999999999999999999999999999999887622 3355667889999999986 4
Q ss_pred -----------CEEEEEeeCCCCCCcEEEEeCCCCe--eEEEecCccCcceEEEEEeCCC----CEEEEEeCCCeEEEEE
Q 001160 554 -----------TRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 554 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iwd 616 (1134)
+.|++++. |..|+||+...++ ..+++.+|.+ .|+.++|.|.- .++++++.||++.||.
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 56888885 7789999988764 4456888888 89999999965 5799999999999998
Q ss_pred CCCC-eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 617 MDNM-NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 617 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.. +.-..-..+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 7632 111111112233568999999999999999999999999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=218.85 Aligned_cols=282 Identities=13% Similarity=0.161 Sum_probs=226.7
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccC-CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER-NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
|..-|..+.+|...+.+++++ .|.|+|||+....- .|.. .+..... ...|+++.++
T Consensus 418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvs---------------------qLdcl~r-dnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVS---------------------QLDCLNR-DNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccc---------------------cccccCc-ccceeeeEec
Confidence 666777888888888888765 56899999864211 0100 0111112 7789999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEE--EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
|||+.|++|+ -.++.|||+..-.... .+......+.+++.+| |.++..++..||.|.|||+.+...++.|+||.+.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 9999999999 6889999998654433 3333335688899999 8999999999999999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCc
Q 001160 927 ITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLE 1005 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~ 1005 (1134)
+.||.+++||..|-|||-|.+||-||+.++..+...-. ...|..+..+|.+.+|+++ .++.|.|...++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF---------~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF---------SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh---------hhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 99999999999999999999999999999875432111 1468889999999999997 5678888877444
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
..-.+ +-|...|.++.|++.|+++++.+.|..+-.|...-|..+.+.... ..+++|..+. |.++|
T Consensus 625 ~kyql---hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~-----------SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 625 EKYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES-----------SSVLSCDISF-DDKYI 689 (705)
T ss_pred cceee---cccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc-----------Ccceeeeecc-CceEE
Confidence 33222 456899999999999999999999999999999999999877533 5678888887 66999
Q ss_pred EEEeCCCcEEEEecC
Q 001160 1086 ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1086 ~s~~~Dg~v~vW~~~ 1100 (1134)
|||+.|....||.+.
T Consensus 690 VTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 690 VTGSGDKKATVYEVI 704 (705)
T ss_pred EecCCCcceEEEEEe
Confidence 999999988888763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=198.70 Aligned_cols=301 Identities=16% Similarity=0.238 Sum_probs=230.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~ 422 (1134)
.|.+.|+++.+.+..-+++++|+.||.|.+||+++........+ +.+.......+-..+|+-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l----i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL----IAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc----eeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 38899999999997666889999999999999987652221110 011111122223568999999999999 6668
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCC-cEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK-QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+.+++-|.+++|||.++-+... .|+ ..+.|++-+++|-.. ..++|+|..|-.|++.|+.+|...+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999866543 332 466788888888543 44789999999999999999999999999999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEe--------------cCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDY--------------DAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
++.|+|..+ -.|++|+.||.|++||++.. .+...+ ..|.+.|..++|+.++.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999875 68899999999999999764 333322 345568999999999999999986 7
Q ss_pred CcEEEEeCCCCeeEEE-ec--CccC--c-ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 567 SHLVEWNESEGAIKRT-YS--GFRK--R-SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~-~~--~~~~--~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
..+++|+...|+-... +- .+.+ . .+. +. +.+...++.--.++.+.++++-.+..+..+..| ...+.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEee
Confidence 7899999988753211 11 0111 0 111 22 333444555556689999999999999999988 347899999
Q ss_pred ccCCCEEEEEeCCCcEEEEEC
Q 001160 641 NKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.|+-+...+|..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=195.70 Aligned_cols=243 Identities=16% Similarity=0.122 Sum_probs=191.5
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
...+.|+++.|+|.++.|++++.||++++||+....... .+ .|..++.+++|.++.+ +++|+-||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~~-~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---KF-KHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---he-ecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 357789999999999999999999999999999874333 33 4899999999998664 8999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
++... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+... ..|.++..+ |+.|++++.
T Consensus 84 ~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 84 TGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred CCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccC-ceEEEEecc--CCEEEEeec----
Confidence 88754 455699999999998765 68999999999999999874444444433 378777654 567777654
Q ss_pred CCcEEEEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eeEEEEeCCCC-------CC
Q 001160 566 ESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM----NMLTTVDADGG-------LP 633 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1134)
+..+.+||+++...... ....-+-.++|+++-|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 77899999997654332 22222337899999999888999999999988666654 33344444421 23
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+|++++|+|-...+++|+.||.|.+||..+.+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh
Confidence 68999999998899999999999999998873
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=208.87 Aligned_cols=225 Identities=13% Similarity=0.147 Sum_probs=193.3
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV- 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~- 485 (1134)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEe
Confidence 34679999999999999999999999999999999887 6679999999999999999 89999999999999864
Q ss_pred --------CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 486 --------AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 486 --------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+-++++.|..|.-+|+++...+.+...+++++|.|.++++||+..+..+..+. ....+.+++.+|-++.++
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY 233 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence 34577889999999999998877666899999999999999999887666554 355789999999999999
Q ss_pred EEeeCCCCCCcEEEEeCCC----------------CeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 558 SCGTSKEGESHLVEWNESE----------------GAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
+|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++-||..|++|+.||.|++||+.+.
T Consensus 234 iGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 234 IGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 9875 77788776643 234566777765 57999999999999999999999999999999
Q ss_pred eeEEEEeCCCCCCCcceEEEccC
Q 001160 621 NMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++++++... ..+|+.+.+.|-
T Consensus 310 Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 310 QCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHHhhh--ccccceeEeecc
Confidence 999888743 347888888663
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=209.76 Aligned_cols=253 Identities=17% Similarity=0.261 Sum_probs=205.0
Q ss_pred ccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcc-------ceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 405 NDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGEL-------RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 405 ~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..|.+.|+.+..-|. ...+|+.+..+.|.|||..+.... +....+.+|...-++++|++.... .+++++.|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d 199 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDD 199 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCC
Confidence 459999999999995 456777788999999998654322 233478899998889999998776 89999999
Q ss_pred CcEEEEECCCCe-------eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc--CCCceeEecCCCCcEEEE
Q 001160 477 KMIKVWDVVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 477 ~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~ 547 (1134)
++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||++ +.+.......|...|.|+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 999999997533 2356889999999999999865 799999999999999999 555566788899999999
Q ss_pred EECCCCCEE-EEEeeCCCCCCcEEEEeCCCC-eeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeE-
Q 001160 548 AYSADGTRL-FSCGTSKEGESHLVEWNESEG-AIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNML- 623 (1134)
Q Consensus 548 ~~s~~~~~l-~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~- 623 (1134)
+|+|-+.++ |+++. |++|.+||+++. +++.++.+|.+ .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 279 ~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred EeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999976655 45554 888999999974 57889999988 89999999987 56777889999999999752221
Q ss_pred -----------EEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001160 624 -----------TTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 -----------~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+...+|...|..+.|+|+.. .+++++.|+.+.||.+...
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1244445677899999999665 5678889999999998643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=193.45 Aligned_cols=252 Identities=17% Similarity=0.263 Sum_probs=202.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~ 422 (1134)
|++.|..+...=-|+ .||+++.|++|+|+.+.++.... ....|.||.++|..++|.. -|.+
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 778888887777787 58899999999999998765311 1123789999999999987 8999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-e--eeEEecCCCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-R--KQYTFEGHEAP 499 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~--~~~~~~~h~~~ 499 (1134)
||+++.||.|.||.-.++ ...+..+...|...|++++|.|.+..+.|+.++.||.|.|.+..+. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999887 4445557778999999999999988889999999999999988754 2 22345679999
Q ss_pred eEEEEeeccCC-c-----------cEEEEEecCCeEEEEEccCCCce--eEecCCCCcEEEEEECCCC----CEEEEEee
Q 001160 500 VYSVCPHHKES-I-----------QFIFSTAIDGKIKAWLYDYLGSR--VDYDAPGNWCTMMAYSADG----TRLFSCGT 561 (1134)
Q Consensus 500 v~~i~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 561 (1134)
|++++|.|..- | ..|++|+.|+.|++|+.++.+-. ..+..|...|..++|.|.- .++++|+.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999988621 1 57999999999999999876433 3578899999999999975 46788874
Q ss_pred CCCCCCcEEEEeCCCC--eeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 562 SKEGESHLVEWNESEG--AIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
|+++.||-.+.. ....+ +..... .+..++|+..|+.|++++.|+.|.+|.-..
T Consensus 232 ----Dg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 232 ----DGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ----CCcEEEEEecCccCcccccccccCCc-ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 888999976521 11122 222333 789999999999999999999999997553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=193.79 Aligned_cols=294 Identities=12% Similarity=0.178 Sum_probs=222.0
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
|.++-.++.+.. -.|+.||+.|. +||+|..||.|.|||+.|...-. ++.+|..+|+|++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEEE
Confidence 445566777665 88999999997 89999999999999999865332 3789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
||+||+.|++++.|..|.+||+..|..+++. ....+|+.+.|.|-..+..+++-- +..-.+-++..++.. .+..
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~Lp~ 146 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-VLPK 146 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-eccC
Confidence 9999999999999999999999999877643 257899999999987764444433 334555555543221 1111
Q ss_pred -CCCCeE----EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 496 -HEAPVY----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 496 -h~~~v~----~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
..+... +..| +..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+. |..|
T Consensus 147 d~d~dln~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI 220 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI 220 (405)
T ss_pred CCccccccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence 111111 1123 4456999999999999999999999888777766 78999999999999998875 8889
Q ss_pred EEEeCCC-------Cee--EEEecCc-cCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 570 VEWNESE-------GAI--KRTYSGF-RKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 570 ~~wd~~~-------~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
+.|+++. +++ .+.+..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....+
T Consensus 221 R~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV 299 (405)
T KOG1273|consen 221 RTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDV 299 (405)
T ss_pred EEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeec
Confidence 9999762 111 1111110 111456789999999998876 4567999999999999999877643 56788
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|+|-...+++- ..|.+++|.....
T Consensus 300 ~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 300 NWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ccccceeeeeec-cCCceEEEEeecc
Confidence 999988888877 7789999987543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=220.54 Aligned_cols=285 Identities=20% Similarity=0.204 Sum_probs=215.3
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
|....+.+++.|+|..|++++.||.|++|+.......| .. +. .+ ...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--------------------~t--i~--~~-g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--------------------ET--ID--IS-GELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--------------------ch--hh--cc-CceeEEEee--
Confidence 66778999999999999999999999999864321111 00 00 03 556666665
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++.++++|+ +++|.+|.+.++..-..+....-++++++|+. +|.++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455888888 89999999998876555555677899999999 9999999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCccee
Q 001160 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSR 1008 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~ 1008 (1134)
|.|+|.+.+||+.+-||.|++||++++......-...+.........+..++|+|+|..+++ +.|+.|++|+..+-...
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999999875543221111111111245678999999665555 89999999999544443
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE
Q 001160 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG 1088 (1134)
Q Consensus 1009 ~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~ 1088 (1134)
-......|...+..++|||+|+|||+++.||.|.|||.++-+. |. -...+.+.+|.| +++.+-.-
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~--------~~~~Vc~~aw~p-~~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HE--------FKRAVCCEAWKP-NANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------cc--------ccceeEEEecCC-CCCeeEEE
Confidence 3333344455599999999999999999999999999998111 11 114566788888 55666555
Q ss_pred eCCCcEEEEe
Q 001160 1089 MSDGAVHVVE 1098 (1134)
Q Consensus 1089 ~~Dg~v~vW~ 1098 (1134)
..-|..-+|.
T Consensus 289 ~~~g~~~~~~ 298 (933)
T KOG1274|consen 289 TALGTLGVSP 298 (933)
T ss_pred eeccccccCh
Confidence 5556555553
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=205.73 Aligned_cols=289 Identities=13% Similarity=0.222 Sum_probs=229.1
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEEEEe
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd 573 (1134)
.+.|+++.|+|.. ..+++++.|+++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ...++.||
T Consensus 213 ~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEee
Confidence 4789999999987 8999999999999998875443 445566677999999999999 6777764 67799999
Q ss_pred CCCCeeE--EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe
Q 001160 574 ESEGAIK--RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
+.+.+.. ....++.+..+.....++++++|+..|..|.|.+....+++.+.++...+ .|..++|+.|++.|++.+
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcEEEEEc
Confidence 9987653 34455555578888999999999999999999999999999999998764 579999999999999999
Q ss_pred CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcc
Q 001160 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1134)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1134)
.+|.|.+||+... .++..+..
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D---------------------------------------------------------- 384 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVD---------------------------------------------------------- 384 (514)
T ss_pred CCceEEEEecCCc-ceEEEEee----------------------------------------------------------
Confidence 9999999999876 33322211
Q ss_pred cccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCC
Q 001160 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811 (1134)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~ 811 (1134)
+ ..-.-++++.|++|.+|++|+..|.|.|||.+.--..
T Consensus 385 ---------------------~-----------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---- 422 (514)
T KOG2055|consen 385 ---------------------D-----------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---- 422 (514)
T ss_pred ---------------------c-----------------CccceeeeeecCCCceEEeccCcceEEEeccchhhcc----
Confidence 0 0012267889999999999999999999986531110
Q ss_pred cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCC---CceE
Q 001160 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPP---PAAT 885 (1134)
Q Consensus 812 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~---~~i~ 885 (1134)
...+++.....- ...|+++.|++|++.||.++ ...+++-.+.+......++... +.|+
T Consensus 423 ------------~~PkPik~~dNL----tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt 486 (514)
T KOG2055|consen 423 ------------TNPKPIKTVDNL----TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT 486 (514)
T ss_pred ------------CCCCchhhhhhh----heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE
Confidence 111122211111 67899999999999999998 5779999998887777776543 5689
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 886 FLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 886 ~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
|++||| .+.++|.|..+|.|.+|.+.
T Consensus 487 c~aFSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 487 CMAFSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEecC-CCceEEeecCCCceeeEeec
Confidence 999999 89999999999999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-22 Score=203.27 Aligned_cols=291 Identities=16% Similarity=0.232 Sum_probs=221.9
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d 643 (1134)
...+.+||+++|....++++.....-.++..- .+.+++++. ....+.+|.+....... .+.. ..+|.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL---PGPVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc---ccceeeeecCCC
Confidence 45599999999999999987622122222211 235666655 55679999987765544 2222 236899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
|.+|+.|+..|.|++|.+.+| .++..+.+
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~a-------------------------------------------------- 121 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLSA-------------------------------------------------- 121 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHHh--------------------------------------------------
Confidence 999999999999999999999 66665543
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
|...|+++.|+.||..+++++.||.|.+|.+..
T Consensus 122 -----------------------------------------------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 122 -----------------------------------------------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred -----------------------------------------------hccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 567789999999999999999999999999754
Q ss_pred ccCCCCCCcccccCcccccCCCC--CccccccCCCCCCCCceEEEEeccC--CCEEEEEe-CCeEEEEECCCCeEEEEec
Q 001160 804 TERNPSGKATANVAPQLWQPPSG--TLMTNDINESKPTEESAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~~~~h~~~~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~ 878 (1134)
.- +.... ......+.. | .-+|+++...+. ..++++++ |.++++||+..+.++.++.
T Consensus 155 lv----------------~a~~~~~~~p~~~f~~--H-tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 155 LV----------------SADNDHSVKPLHIFSD--H-TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred ec----------------ccccCCCccceeeecc--C-cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 21 11111 111112333 7 899999988765 45888988 9999999999999988877
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC----------------ceEEEEecCccc--ceEEEEEecCCCEEE
Q 001160 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV----------------DEVKTKLKGHQN--RITGLAFSPTLNALV 940 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~----------------~~~~~~l~~h~~--~i~~l~~s~d~~~l~ 940 (1134)
....+.+++.+| ..+.+.+|+.+|.|.+.++.. +..+..+.||.+ .|+|++++-||.+|+
T Consensus 216 -fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 216 -FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred -cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 566899999999 899999999999999987643 234567889999 999999999999999
Q ss_pred EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCc
Q 001160 941 SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1134)
Q Consensus 941 s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1134)
+|+.||+|+|||+.+.++++.... .. ++|+.+.+.|--+
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~--~k------gpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQT--SK------GPVTNLQINPLER 332 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhh--hc------cccceeEeecccc
Confidence 999999999999999886554321 11 4678888766533
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=204.97 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=204.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|..++|-|||..+++.+ +..+.|||...|..+.+ +++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 789999999998776655 56899999999998875 899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.|..|.+|+-+-...++ ..|.+.|.|+.|+|-.. .++||+-. ..-+|........ ..+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hhh-hheeEEEeee--
Confidence 99999999976544332 26999999999999988 68888744 4678886544322 111 2345666666
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEECCCCC-----EEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAYSADGT-----RLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~-----~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
..||++++.|-.+|+|.+-+-. +++...+. +...+|.+++|+|... .+++.. -..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D----W~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD----WGQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe----ccceeEEEEec-cee
Confidence 5577999999999999987543 34433333 3566999999999642 233331 13345555443 333
Q ss_pred EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+..-+.-.- ...|+++.++|.+++.||.|+.+.+|.. .|-.+.++...+ ..|+.++..|+++.++.|..||+|.-|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehh
Confidence 332221111 3567899999999999999999999964 566666665433 489999999999999999999999999
Q ss_pred ECCCc
Q 001160 660 ANSDG 664 (1134)
Q Consensus 660 ~~~~~ 664 (1134)
++...
T Consensus 291 Nl~fS 295 (1081)
T KOG1538|consen 291 NLIFS 295 (1081)
T ss_pred hhHHh
Confidence 87543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-22 Score=203.96 Aligned_cols=286 Identities=12% Similarity=0.214 Sum_probs=233.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc--cccccceeeccccccccccccccccCCcCeEEEEEcCCCC-E
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER--LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-M 422 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~ 422 (1134)
.+.|++|.|+|..+ +|.+++.||+++||.+..... +.+ +.-...+|.+.+|.|+|. .
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-------------------~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-------------------IHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-------------------eeeccCccceeeecCCCceE
Confidence 57899999999998 788899999999999875432 221 222456899999999999 9
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+++++.....+.||+.+.+..+ ...+.++. ..+.....+++++ +|+..+..|.|.+....+++.+.+++ -.+.|.
T Consensus 273 i~~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~ 348 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVS 348 (514)
T ss_pred EEecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEe
Confidence 9999999999999999876543 22344554 3567788899999 89999999999999999999998886 678899
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---- 576 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---- 576 (1134)
.++|+. ++..|++++.+|.|.+||++...+...+...++ .-++++.++++.++|+|+. .|.|.|||..+
T Consensus 349 ~~~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 349 DFTFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAS 422 (514)
T ss_pred eEEEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhcc
Confidence 999974 558999999999999999999888877765544 4578889999999999974 88899999653
Q ss_pred --CeeEEEecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEe
Q 001160 577 --GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTT 651 (1134)
Q Consensus 577 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~ 651 (1134)
.+++..+..-.. .|++++|++|++.|+.+| .+..+++-.+.+......++.. .....|+|++|+|.+.++|.|.
T Consensus 423 ~~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred CCCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 456666655544 799999999999988877 6778999998887766666433 2345789999999999999999
Q ss_pred CCCcEEEEECC
Q 001160 652 SDNGIKILANS 662 (1134)
Q Consensus 652 ~dg~i~iw~~~ 662 (1134)
.+|.+.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999863
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=194.57 Aligned_cols=253 Identities=13% Similarity=0.233 Sum_probs=196.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 411 V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
-.|+.||+.|.+||+|+.||.|.|||+.+...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976554 6789999999999999999 8999999999999999999999
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC----cEEEEEECCCCCEEEEEeeCCCCC
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.+. ...+|+.+.|+|......+++ -.+..-.+-++..+.....-....+ .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9886 788999999999876444444 3444455555554322221111111 1223468999999999974 8
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------ee--EEEEeCCCCCCCcce
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM-------NM--LTTVDADGGLPASPR 637 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 637 (1134)
|.+.++|..+.+++..++......|..+.++..|.+++.-+.|+.||.|++..- ++ .+.++.--....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 889999999999999888766447899999999999999999999999998631 11 111111111123468
Q ss_pred EEEccCCCEEEEEeC-CCcEEEEECCCchhhhhhhcCCc
Q 001160 638 LRFNKEGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
++|+.+|.+++.++. ...++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999988775 568999999888 7788777754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=206.69 Aligned_cols=292 Identities=13% Similarity=0.152 Sum_probs=215.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
++++++.|+.|++||+.+++.+..+..+.. +.+++|++++ ..+ ++++.++.|++||..+++....+..+ ..+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 688999999999999999999888876544 6778887754 555 66778999999999987766555443 335678
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeeEEEE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1134)
+|+|+++.+++++. .++.+.+||+.+++.+..+.... .+.+++|+|+++.+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876542 36789999999988887776433 467899999999999888664 5778899888776655
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccc
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
.... ....++|++++++|++++ .++.|++||+.++ +....+.
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~--------------------------------- 196 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKIT--------------------------------- 196 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeee---------------------------------
Confidence 4322 347799999999886554 5899999998766 1111100
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCc
Q 001160 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
+...+.
T Consensus 197 --------------------------------------------------------------------------~~~~~~ 202 (300)
T TIGR03866 197 --------------------------------------------------------------------------FEIPGV 202 (300)
T ss_pred --------------------------------------------------------------------------eccccc
Confidence 000000
Q ss_pred ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeE
Q 001160 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKV 863 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i 863 (1134)
... ......++|+||+++++++. ++.+
T Consensus 203 -----------------------------------------------~~~----~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 203 -----------------------------------------------HPE----AVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred -----------------------------------------------ccc----cCCccceEECCCCCEEEEEcCCCCeE
Confidence 000 11223577889998765543 6789
Q ss_pred EEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCCceEEEEecCcccceEEEEEec
Q 001160 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP 934 (1134)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~ 934 (1134)
.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..+... ...++++++|
T Consensus 232 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999888776654 445789999999 88888776 56899999999999999998754 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-22 Score=201.36 Aligned_cols=294 Identities=15% Similarity=0.224 Sum_probs=224.7
Q ss_pred CCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCE
Q 001160 345 QGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~ 422 (1134)
+.++|++++|+|.-. .++|+|+..|+|-+||+.+.+......+ ++..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 678999999999876 7999999999999999975554433211 3678999999999999 5568
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.++.=|...+||++++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999987532 22223333455678889988888 677777777999999998665 556677999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCce----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-- 575 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-- 575 (1134)
+++++|..+ .++++++.|++.+|||++..... .....|...|.++.|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999999876 79999999999999999875443 345568889999999999888888764 7789999983
Q ss_pred --CCeeEEEecCccCc----ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce-EEEccCCC-EE
Q 001160 576 --EGAIKRTYSGFRKR----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR-LRFNKEGS-LL 647 (1134)
Q Consensus 576 --~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~-~l 647 (1134)
...+..++...... ...-..|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 33333333322110 2334679999999999999999999999999877776544322 3433 47999777 55
Q ss_pred EEEeCCCcEEEEECC
Q 001160 648 AVTTSDNGIKILANS 662 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1134)
+.++..|.|+||-..
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555568899998654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=204.57 Aligned_cols=317 Identities=16% Similarity=0.221 Sum_probs=231.9
Q ss_pred eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~w 526 (1134)
..+.||.+.|.++...|.|. +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|+|..+...|+++-... +.+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 36779999999999999999 89999999999999999999999886 56789999999998866666655544 5555
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCCCCE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
+..-+..+... +....|+.+-.....+..+..|.-.... -++..-.|.. .|+.+.|+..|.|
T Consensus 470 np~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCce
Confidence 44332111110 1111222221111234567778654211 1223333444 8999999999999
Q ss_pred EEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 603 FLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 603 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
|++.. ....|.|+++.......-+... ...|.++.|+|...+|++++.. .|+|||+... .+++.+..
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF~ks--kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kq-elvKkL~t------ 605 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPFRKS--KGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQ-ELVKKLLT------ 605 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCchhhc--CCceeEEEecCCCceEEEEecc-ceEEEehhHH-HHHHHHhc------
Confidence 99865 4467999999876655444332 3468999999999888887764 8999998765 44443321
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
+
T Consensus 606 ---------------------------------------------------------------------------g---- 606 (733)
T KOG0650|consen 606 ---------------------------------------------------------------------------G---- 606 (733)
T ss_pred ---------------------------------------------------------------------------C----
Confidence 0
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCC-CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-----
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR----- 912 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~----- 912 (1134)
...|..++++|.|..|+.|+ |+.+..||++- .++.+++..|...+++++|++ .-.++|+|+.||++.|+--.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhh
Confidence 23356677777777777777 78888888864 356778888999999999999 88999999999999998532
Q ss_pred -Cc---eEEEEecCcccc----eEEEEEecCCCEEEEEcCCCcEEEE
Q 001160 913 -VD---EVKTKLKGHQNR----ITGLAFSPTLNALVSSGADAQLCMW 951 (1134)
Q Consensus 913 -~~---~~~~~l~~h~~~----i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1134)
.. -.++.|++|... |..+.|+|...+|+|+|.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 245778899876 8999999999999999999999998
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=225.10 Aligned_cols=235 Identities=17% Similarity=0.321 Sum_probs=213.9
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeeeh
Confidence 3588889999987788999999999999999987765444 6789999999999999988 8999999999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
+.++.++++.+|...+.++.|+|.. .++++|+.|+.+++||++..++...+.+|...+..+.|+|+|++++.++.
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--- 174 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--- 174 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC---
Confidence 9999999999999999999999976 88999999999999999999999999999999999999999999999874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|..+++||...|+....|..|.. .+.++.|+|..-.++.||.|+++++||+++.+.+...... ...|.+.+|+|++
T Consensus 175 -d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 175 -DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDG 250 (825)
T ss_pred -cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCc
Confidence 78899999999999999999987 8999999998888888999999999999998888776654 4579999999999
Q ss_pred CEEEEEeCC
Q 001160 645 SLLAVTTSD 653 (1134)
Q Consensus 645 ~~l~~~~~d 653 (1134)
..+++|-..
T Consensus 251 ~~~~~G~q~ 259 (825)
T KOG0267|consen 251 KIVLSGEQI 259 (825)
T ss_pred eeeecCchh
Confidence 998887665
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=206.21 Aligned_cols=275 Identities=9% Similarity=0.062 Sum_probs=203.7
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCC
Q 001160 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~~ 439 (1134)
++++++.|+.|.+||+.+++.+.. +..+ ..+.+++|+|+|+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788899999999999998876542 2333 346789999999977 5667889999999998
Q ss_pred CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001160 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1134)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~ 519 (1134)
++... .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .++++++.
T Consensus 63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg--~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG--KIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC--CEEEEEec
Confidence 76544 343343 3567899999984 345566789999999999888877753 3346788887754 78888877
Q ss_pred CC-eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC------cceE
Q 001160 520 DG-KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLG 592 (1134)
Q Consensus 520 d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~ 592 (1134)
++ .+.+||..+........ ......+++|+|+++++++++. .++.|.+||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987765544333 2334578999999998876542 367899999999988776653211 0234
Q ss_pred EEEEeCCCCEEEE-EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCCchhhhhh
Q 001160 593 VVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 593 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 670 (1134)
.++|+|+++++++ .+.++.+.+||..+++....+... ..+.+++|+|+|++|+++ +.++.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 5889999998655 456678999999998877665422 257899999999999876 45899999999988 44444
Q ss_pred h
Q 001160 671 L 671 (1134)
Q Consensus 671 ~ 671 (1134)
+
T Consensus 287 ~ 287 (300)
T TIGR03866 287 I 287 (300)
T ss_pred E
Confidence 4
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=184.83 Aligned_cols=304 Identities=15% Similarity=0.196 Sum_probs=219.5
Q ss_pred cccccceEEEEEec-CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
..|.+.|.++.+.+ .|+++++|+.||.+.+||++..........+.. ..++........| ...|.++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k----------~~c~v~~~h~~~H-ky~iss~~ 108 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK----------HKCIVAKQHENGH-KYAISSAI 108 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh----------eeeeccccCCccc-eeeeeeeE
Confidence 34778899999886 689999999999999999975332111111110 0011111122347 89999999
Q ss_pred ecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCC--CCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 848 LSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ--DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 848 ~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
|-| |.-.+.+++ |.+++|||..+.+....|+ -.+.|.+-++||- ..-++|+|..|-.|++-|+.+|.+-..|.||
T Consensus 109 WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 109 WYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred EeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 998 666777777 9999999999998888887 4567888788772 1347889999999999999999999999999
Q ss_pred ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCC--------CCCCCcCceEEEECCCCcEEEE-EE
Q 001160 924 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG--------RQSPLVGETKVQFHNDQTHLLV-VH 993 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~fspdg~~l~~-~~ 993 (1134)
.+.|.++.|+|... .|+||+.||.|++||+..... ...++....+ .....+.+..++|+.||.++++ +.
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 99999999999765 578999999999999976411 0111111111 1111257899999999999999 78
Q ss_pred CCeEEEEeC-CCcc-eeccCCCCCCCC----CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccC
Q 001160 994 ESQISVYDS-KLEC-SRSWSPKDALPA----PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 994 d~~v~vwd~-~~~~-~~~~~~~~~h~~----~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
|..+++|+. ++.. ++.+.+ ..|+. .+. +. +.+...++.--.++.+.++++-.|..+..+..|
T Consensus 267 d~r~r~wn~~~G~ntl~~~g~-~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------- 334 (397)
T KOG4283|consen 267 DDRIRVWNMESGRNTLREFGP-IIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------- 334 (397)
T ss_pred ccceEEeecccCccccccccc-ccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc---------
Confidence 999999999 4332 222211 11111 111 23 445555555667799999999999999988755
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
-....+++|.| +-+...+|..|+.+..|.+
T Consensus 335 -~k~i~c~~~~~-~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 -LKRINCAAYRP-DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -cceeeEEeecC-chhhhhccccCCccccccc
Confidence 24566788888 7788999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=194.75 Aligned_cols=247 Identities=12% Similarity=0.155 Sum_probs=192.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeE------------------EecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLE------------------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
-|+++|.|+.|..|.|||++-...+.+... -.+|+..|.+++|+..-+. .||+||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 367999999999999999864333222222 2379999999999988777 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
+||+.+|++..++..|.+.|.++.|+|... .+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999998865 8999999999999999985333222222355788999999888777666
Q ss_pred eCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 561 TSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
. .+|+++-+|++. ++++.++..|.+ .|.++++++.. ..+++++.|+.|++|++..-.........-......|.
T Consensus 349 t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 T---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred c---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 4 489999999996 589999999988 99999999866 45777999999999998754432222111112234566
Q ss_pred EEccCC-CEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 639 RFNKEG-SLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 639 ~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
++.|+- -.++.|+..+.++|||+.+.....+.|
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 777754 467788888899999998884444444
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=211.18 Aligned_cols=297 Identities=11% Similarity=0.181 Sum_probs=226.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
+....++...++-..+++.| ...+.||.+........ +.+..-. -..-...+..+.|+. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKT----------KQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeeccc----------ccceeeehhhcccccchhhhhe
Confidence 45677788888887666555 34778887765433211 1111000 001122456778876 678999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+++..|.|.+||+.....-.....|..|...+.++.|++.... +|++||.||+|++||++..+...++.+....|..+.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222333367889999999999998777 899999999999999999998889999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
|+|.. +.+++++.+.|.+++||++... ....+..|.++|.|+.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99976 5899999999999999998654 45688899999999999999999999985 788999999877655555
Q ss_pred cCccCcceEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCe-eEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 584 SGFRKRSLGVVQFDTTRNR-FLAAG--DEFQIKFWDMDNMN-MLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
..+...++.++.|-|...+ |++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||+|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555558999999998865 45544 78899999998644 45566655 44688899976 5567888888888765
Q ss_pred EECCCc
Q 001160 659 LANSDG 664 (1134)
Q Consensus 659 w~~~~~ 664 (1134)
-..++.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 444443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=201.87 Aligned_cols=291 Identities=14% Similarity=0.133 Sum_probs=208.3
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCe
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGK 862 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~ 862 (1134)
.+.|+.+..+|.|.++|.....+.+ +..+ .... ..| .+.|..+.|.|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~--lk~~--~aH-~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQ--LKKP--LAH-KNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcch---------------hhhh--hccc--ccc-cceeEeeccCCCceeEEEccCCce
Confidence 3457777888999999875433311 1110 1112 238 99999999999777888887 899
Q ss_pred EEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-------------------------
Q 001160 863 VSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------------------------- 915 (1134)
Q Consensus 863 i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~------------------------- 915 (1134)
+++||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999975321
Q ss_pred --EEEEecCcccceEE---EEEecCCCEEEEEcC-CCcEEEEeCCCcccccc---eeeecCCCCCCCCcCceEEEECCCC
Q 001160 916 --VKTKLKGHQNRITG---LAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 916 --~~~~l~~h~~~i~~---l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
.+....+|...|.+ +.+..|...|||+|. |+.|+|||+......-. ........+.....++.++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 11122345555666 666789999999998 99999999987543211 1111122223334667788888888
Q ss_pred cEEEE-EECCeEEEEeCCCcceeccCCCCCCCCC--eEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccc
Q 001160 987 THLLV-VHESQISVYDSKLECSRSWSPKDALPAP--ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1134)
Q Consensus 987 ~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~--v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1063 (1134)
.+|.+ +.|+.|++|++....+.......++... -..-..|||+.+|++|+.|...++|.+.+.+.--.+
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~-------- 355 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL-------- 355 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh--------
Confidence 88887 8999999999943333322222222111 112235899999999999999999999986543222
Q ss_pred cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1064 YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..+|...+.+++|.|..-.-++++++|..+++|++.++-
T Consensus 356 -l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 -LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -hhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 125567788888888766778888999999999996543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=179.34 Aligned_cols=259 Identities=13% Similarity=0.162 Sum_probs=190.4
Q ss_pred CCCCceEEEEeccCCCEEEEEe-CCeEEEEECC----CCeEEEEecCCCCceEEEEEc-CCCCcEEEEEeCCCcEEEEEc
Q 001160 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMM----TFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGMEDSSVQIYNV 911 (1134)
Q Consensus 838 h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s-~~~~~~lasg~~dg~i~iwd~ 911 (1134)
| ..-|.++.|.+-|+.+|+++ |++++|||.. +..+....+.|.+.|..+.|. |.=|+.+|+++.|+++.||+-
T Consensus 12 h-~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 H-KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred C-cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 7 88899999999999999999 9999999964 346777888999999999995 445899999999999999985
Q ss_pred CC---------ceEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeee-------cCCCCCCC
Q 001160 912 RV---------DEVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQ-------APAGRQSP 973 (1134)
Q Consensus 912 ~~---------~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~-------~~~~~~~~ 973 (1134)
.. .....++....+.|+.+.|.|. |-.||+++.||.+|||+.-..-.++...+. .+.+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~-- 168 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN-- 168 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc--
Confidence 21 2344567777889999999995 678999999999999987543322221111 111111
Q ss_pred CcCceEEEECCCC---cEEEEEECC------eEEEEeC--CCcceeccCCCCCCCCCeEEEEEccC-C---CEEEEEecC
Q 001160 974 LVGETKVQFHNDQ---THLLVVHES------QISVYDS--KLECSRSWSPKDALPAPISSAIYSCD-G---LLVYAGFCD 1038 (1134)
Q Consensus 974 ~~~v~~~~fspdg---~~l~~~~d~------~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~d-g---~~l~~~~~d 1038 (1134)
...-.++.|+|.. .+||++.+. .+.||.. .++.........+|..+|+.++|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 1355788888643 577888765 8999988 55455555555688999999999996 3 369999999
Q ss_pred CcEEEEeCCC------------cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1039 GAIGVFDAET------------LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1039 g~I~vwd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
| |+||.+.. +..+..+.......-. .|...+-.+.|.- -|..|++.+.||+|++|..+-..
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEee-eeeEEeecCCCceeeehhhhhhh
Confidence 9 99999873 2222233322222222 3334455777776 57999999999999999976433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=210.94 Aligned_cols=249 Identities=12% Similarity=0.204 Sum_probs=197.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~las~ 426 (1134)
....|+|+.--..+||+++..|.|.+||+.....- ....++..|+..|+++.|++ ...+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn----------------k~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN----------------KLLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccc----------------hhhhHhhhhccceeeeeeccCCccEEEec
Confidence 45668888666679999999999999999862110 11224778999999999999 56789999
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCCCCCeEEEEe
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~ 505 (1134)
+.||+|++||++..+... ++.+....|.+|.|+|-... .++++.+.|.+.+||++. .++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999876554 66678889999999997655 899999999999999986 4567788999999999999
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecC-CCCcEEEEEECCCCCE-EEEEeeCCCCCCcEEEEeCCCCe-eEEE
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGA-IKRT 582 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~-~~~~ 582 (1134)
+|+. .+|++|+.|++|+|||+.+.+....... ...++.++.|-|...+ |++++. -.|-.|++||++..- +..+
T Consensus 229 hPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cCCC--ceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 9944 8999999999999999987665544433 4558999999998776 455554 236779999998654 5567
Q ss_pred ecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCe
Q 001160 583 YSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+..|.. .++.++|.. |...+.+++.||+|..-..+++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 788877 888899975 34567788899988776665543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=196.40 Aligned_cols=330 Identities=12% Similarity=0.238 Sum_probs=235.6
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEEeCCCcE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGI 656 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~dg~i 656 (1134)
+-..+.+|.+ .|.+++..|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.+++|+|.+. .||++..+ .+
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence 3445778887 89999999999999999999999999999999999998764 689999999665 44544444 46
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
.|.+..-|.++...... .. ++-.|
T Consensus 467 ~ivnp~~G~~~e~~~t~---el---------------------------l~~~~-------------------------- 490 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTK---EL---------------------------LASAP-------------------------- 490 (733)
T ss_pred EEeCccccchhhhcchh---hh---------------------------hhcCC--------------------------
Confidence 67665544221111000 00 00000
Q ss_pred ccccccccCccceeccCCCCCc--cceeEeecCCcccccceEEEEEecCCcceEEeecc---CeeEEeecccccCCCCCC
Q 001160 737 KPRVAEDVDKIKSWRIPDISDP--SQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGK 811 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~ 811 (1134)
.....+..+..|.-...... +.+..+. |...|..+.|+..|.+|++...+ ..|.|+++..
T Consensus 491 --~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK-------- 555 (733)
T KOG0650|consen 491 --NESEPDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK-------- 555 (733)
T ss_pred --CccCCcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEeccc--------
Confidence 00111235566655432211 1222222 67889999999999999987664 5566666532
Q ss_pred cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 812 ~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
...+ ..+.. . .+.+.++.|+|...++++++...|+|||+..+.++..+......|..++.+|
T Consensus 556 --------------~~sQ-~PF~k--s-kG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 556 --------------RKSQ-SPFRK--S-KGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred --------------cccc-Cchhh--c-CCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 1111 11211 2 6779999999999999999999999999999888888887788899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCc-eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR 970 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~ 970 (1134)
.|.-|+.|+.|+.+..+|++-+ +..++++.|...+++++|++.-.++++|+.|+++.|+.-.-...+ ++.
T Consensus 618 -~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl----~qn---- 688 (733)
T KOG0650|consen 618 -NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL----LQN---- 688 (733)
T ss_pred -CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh----hcC----
Confidence 8888889999999999999854 677889999999999999999999999999999998853321111 000
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCC----CCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL----PAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h----~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
..+-.+....+| ...|....|+|..-+|++++.||+|++|.
T Consensus 689 ----------------------------------pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 689 ----------------------------------PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ----------------------------------CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 000001111222 34588999999999999999999999983
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=198.50 Aligned_cols=289 Identities=18% Similarity=0.215 Sum_probs=211.8
Q ss_pred EEEEec--CCCeEEEEEeCCCcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 351 SMDFHP--QQQTILLVGTNVGDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~sp--dg~~llasg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
++.|++ +.+++||.+..||.|.++|....... ....|+ ....|...|..+.|-|....|++++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsas 119 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSAS 119 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEcc
Confidence 355653 45679999999999999998754322 111111 1346999999999999777999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-------------------
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR------------------- 488 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~------------------- 488 (1134)
.|.++++||+++++..... .+.||.+.|.+++|.+++.. .+++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred CCceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 9999999999998776533 46799999999999999887 89999999999999986321
Q ss_pred --------eeEEecCCCCCeEE----EEeeccCCccEEEEEec-CCeEEEEEccCCCceeE--------ecCC---CCcE
Q 001160 489 --------KQYTFEGHEAPVYS----VCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVD--------YDAP---GNWC 544 (1134)
Q Consensus 489 --------~~~~~~~h~~~v~~----i~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v 544 (1134)
.+.....+...|.+ +.| . |...|++++. |+.|+|||++....... +..+ ...+
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 01112234444443 333 2 3378999888 99999999987554331 2222 2367
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEecCccCcceE-EEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLG-VVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
.++.....|.+|++.+. |+.|++||+.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+
T Consensus 275 ~nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EEEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 88888888998887664 778999999863 355556655432322 23468999999999999999999998765
Q ss_pred eE-EEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCCc
Q 001160 622 ML-TTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 622 ~~-~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.- ..+.+| ...|++++|.| .-.-++++++|..+++|++.++
T Consensus 351 ~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 351 APPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 43 333433 45799999988 3345677799999999999776
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-19 Score=187.50 Aligned_cols=274 Identities=15% Similarity=0.211 Sum_probs=212.0
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|+|++|+.||+.+++|+.|..|.+|+..-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 788999999999988775 45699999999999999999999 999999999999999999999999998653322
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+.. .|...|.|+.|+|-...|++++-. ..-+|..... ...+
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K--------------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSK--------------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHh---------------------------------
Confidence 221 344589999999998889888754 4567765432 1000
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEec
Q 001160 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
.....++.+.+|..
T Consensus 129 ------------------------------------------------------------------~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 129 ------------------------------------------------------------------HKSSSRIICCSWTN 142 (1081)
T ss_pred ------------------------------------------------------------------hhhheeEEEeeecC
Confidence 01235678999999
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCcc-ccccCCCCCCCCceEEEEeccCC-----CEEE
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLM-TNDINESKPTEESAACIALSKND-----SYVM 856 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~h~~~~i~~~~~s~dg-----~~la 856 (1134)
||++++.|-.+|+|.+-+- +|+.. ....++ +. ..+|.+++|+|.. ..++
T Consensus 143 DGqylalG~~nGTIsiRNk-----------------------~gEek~~I~Rpg-g~-Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-----------------------NGEEKVKIERPG-GS-NSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred CCcEEEEeccCceEEeecC-----------------------CCCcceEEeCCC-CC-CCCceEEEecCCCCCCccceEE
Confidence 9999999999999998642 22211 111222 24 7899999999964 3666
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1134)
+.+ ..++.+|.+. |+.+..-+.-.-...|+.+-+ +|.++..|+.|+.+.+|. +.|-.+.++......|+.++..|+
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred EEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccC
Confidence 666 6777777774 455544333444567899999 999999999999999997 457777777777788999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCC
Q 001160 936 LNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~ 955 (1134)
++.++.|+.||+|.-|++..
T Consensus 275 sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred CceEEEEEccCeeehhhhHH
Confidence 99999999999999998753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-20 Score=184.36 Aligned_cols=303 Identities=18% Similarity=0.225 Sum_probs=222.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...+|..+.|.+++...+|+|+.|..|+||.+..+..-... ........|..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 35699999999998767999999999999999876543210 01112234788999999999999999999
Q ss_pred EEeCCCeEEEEEcC--------C-----CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 425 VAFSKHIVHLYTYN--------P-----TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 425 s~~~dg~i~iwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
+|+.+|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|..+++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 122334456778999999999999999 89999999999999999999999
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-------------------CC----CCcEEEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------------AP----GNWCTMMA 548 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------~~----~~~v~~~~ 548 (1134)
.+.+|...|..++|.|-. +++++-+.|...+.+.+...+...... .| ..-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999998876 899999988877766654332221100 01 11345678
Q ss_pred ECCCCCEEEEEeeCCCC-----CCcEEEEeCCC-CeeEEEecCccCcceEEEEEeC------------------CCCEEE
Q 001160 549 YSADGTRLFSCGTSKEG-----ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDT------------------TRNRFL 604 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~-----~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~ 604 (1134)
|+|||..+++...--+- -+..++++-.. .++...+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999875421111 22345555432 234444444443 344444443 222334
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+ ....|++||.++..++.....- +...++.++|++||..++..+.||...+..++..
T Consensus 317 iA-t~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IA-TKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Ee-ecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 44 4567999999998888777532 3458999999999999999999999988877765
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=173.98 Aligned_cols=255 Identities=13% Similarity=0.191 Sum_probs=194.2
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
-.+|.+-|.|+.|.+-|+++|+|+.|++++|||.++ ..........+.|.+.|..+.|.+- |+ .+|+++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 467999999999999999999999999999999543 3445556678899999999999653 55 899999999999
Q ss_pred EEECCC------C---eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE------e-------c
Q 001160 481 VWDVVA------G---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD------Y-------D 538 (1134)
Q Consensus 481 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~-------~ 538 (1134)
||.-.. + ....++......|+.+.|.|..-|-.+++++.||.+|||+......... + .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998421 1 1234566778899999999999889999999999999998754332221 1 1
Q ss_pred CCCCcEEEEEECCC---CCEEEEEeeC-CCCCCcEEEEeCCCC----eeEEEecCccCcceEEEEEeCCC----CEEEEE
Q 001160 539 APGNWCTMMAYSAD---GTRLFSCGTS-KEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTTR----NRFLAA 606 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~---~~~l~~~~~~-~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~ 606 (1134)
.+.....|+.|+|. ..+|+.++.+ ...-+.++||....+ ..+.++.+|.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 23446789999974 3567776632 112346788876543 24566777877 99999999964 468889
Q ss_pred eCCCeEEEEECCCCe-----------------eEEEEe-CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 607 GDEFQIKFWDMDNMN-----------------MLTTVD-ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.+.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999987311 122222 33456689999999999999999999999999764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=211.09 Aligned_cols=233 Identities=11% Similarity=0.220 Sum_probs=209.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|...|.|+..-..++ .+++|+.|..+.+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 677888888866665 78999999999999977544332 2689999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.+|+|++||+..++.++ +|.+|...+.++.|+|-+. +.++|+.|+.+++||++..-|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 8889999999999999999 789999999999999998889999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
|+|++ .++++++.|.++++||+..++....+..|...+.++.|+|..-.++.|+. |.++++||+++.+.+....
T Consensus 162 lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 98865 89999999999999999999999999999999999999999888888875 8889999999999888887
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCC
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1134)
.... .|.+..|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7765 89999999999988887644
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-21 Score=219.13 Aligned_cols=253 Identities=14% Similarity=0.243 Sum_probs=208.3
Q ss_pred CCcCeEEEEEcCCCCE----EEEEeCCCeEEEEEcCC---CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 407 AAISVNRCVWGPDGLM----LGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~----las~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
....-+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.... ++|+|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 3456889999998876 88899999999999876 4444444467789999999999998877 89999999999
Q ss_pred EEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCE
Q 001160 480 KVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1134)
.|||+..-+.-.++. ...+.|.+++|+..- ...|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++..
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998865554442 245789999998653 37899999999999999999888777766554 5789999999865
Q ss_pred EEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
-+....+.|+...|.+||++. ..+++.+++|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ..
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 444344556788999999985 457788888887 89999999977 78888999999999999999999998764 34
Q ss_pred CcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+..+.|.|... .+++++-||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 789999999554 8888999999999998765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=175.50 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=212.0
Q ss_pred CCCCeeEEEEec----CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-
Q 001160 345 QGSNVMSMDFHP----QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD- 419 (1134)
Q Consensus 345 h~~~V~~v~~sp----dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd- 419 (1134)
|..+|..++|++ +...++|+.+ ...+.+|+......+. .++...-..|...-..++|+-|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEecC
Confidence 778999999984 3334666655 5689999886543211 0111112347778888999764
Q ss_pred ---CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---
Q 001160 420 ---GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1134)
Q Consensus 420 ---g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--- 493 (1134)
..++|+|+.-|.|+|.|+.+++... .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 3489999999999999999987766 67799999999999999877 8999999999999999999999877
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee----------------------------EecCCCCcEE
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----------------------------DYDAPGNWCT 545 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------------~~~~~~~~v~ 545 (1134)
.||.+.|.++.|++++ .++++++.|.++++|++...+... ....|...|.
T Consensus 178 egHrdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 4699999999997765 799999999999999997322111 0111222333
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCee-------------EEEecCccCcceEE--EEEeCCCCEEEEEeCC
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI-------------KRTYSGFRKRSLGV--VQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~-------------~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~d 609 (1134)
|+.|- |+++++-+ .++.|..|... -++. +..+....- .+.- .+|.|-++.|+.|...
T Consensus 256 Cvrw~--gd~ilSks----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~ 328 (385)
T KOG1034|consen 256 CVRWF--GDFILSKS----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQS 328 (385)
T ss_pred HHHHH--hhheeecc----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccCC
Confidence 33333 45666654 36679999872 1111 122222211 3443 4456667889999999
Q ss_pred CeEEEEECCCCee--EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 610 FQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 610 g~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|.|++||++..++ ..++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus 329 g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 329 GKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999998665 3344444455689999999999999999999999999853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-17 Score=189.99 Aligned_cols=374 Identities=22% Similarity=0.397 Sum_probs=287.7
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecCCCC-CeEEEEeeccCCcc-EEEEEec-CCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEA-PVYSVCPHHKESIQ-FIFSTAI-DGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~~~-d~~i 523 (1134)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3457899999999999999 78888899999999998887 6777776443 77888774 44445 5555445 9999
Q ss_pred EEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC-
Q 001160 524 KAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN- 601 (1134)
Q Consensus 524 ~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 601 (1134)
.+||... ......+..|...|..++|+|+++.+++++. .++.+++|+...+..+..+.+|.. .+.+++|+|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999998 6777788889999999999999998877742 378899999999899999998776 899999999998
Q ss_pred EEEEEeCCCeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 602 RFLAAGDEFQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
.+++++.|+.|++||...+..+. .+..+.. .. ...|++++..+++++.|+.+++|+..........+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 45555899999999998777777 5665543 22 22899999899999999999999987652100000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
..|...+.++.+.|++..+++++.|+.+.+|+...... ..... ...| .
T Consensus 281 --------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~-~ 328 (466)
T COG2319 281 --------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGH-E 328 (466)
T ss_pred --------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-eccc-C
Confidence 11456788889999888888888888899997643211 00000 1115 5
Q ss_pred CceEEEEeccCCCEEEEE-e-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEE-EeCCCcEEEEEcCCceEE
Q 001160 841 ESAACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg~i~iwd~~~~~~~ 917 (1134)
..+..+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..+.. +..++.+.+|+.......
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeee
Confidence 678889884343566666 4 7889999998877333333222 289999999 7 55554 789999999999988877
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.....+...+....+++++..+++++.++.+++|+..+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 77665547889999999999999999999999999988
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=180.02 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=167.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
...-+.++|++++|+|....-++++|+.-|.|-+||+.+. ..+..+..|.++|.++.|+|... ..+++.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCcee
Confidence 4456889999999999877448999999999999999532 34567888999999999999866 789999999999
Q ss_pred EEEEccCCCceeEecC--CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCC
Q 001160 524 KAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
++-|++.......+.. ....+..+.|+.+...++.+.. -|.+.+||.+++.. ...+..|.. .|++++++|..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~----~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN----VGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec----ccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999987655444443 5567888999998888887753 45799999997654 566667776 89999999977
Q ss_pred -CEEEEEeCCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 601 -NRFLAAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 601 -~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+++++|.|++++|||++...... .+..-.|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 457889999999999998643322 23333455689999999988779999999999999963
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=178.07 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=194.2
Q ss_pred cceEEEEecCCCCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccc-cccccceeeccccccccccccccccCCcCeEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRER-LAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
|.-..+...|.+.++.+.-++-|+ .+.|+-+..|.|.||++...-. +....+.+-+ ....+...+.+|.+.=+.
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444456666888999999988763 4667778899999999864321 1110110000 111223346789999999
Q ss_pred EEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---ee
Q 001160 414 CVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RK 489 (1134)
Q Consensus 414 i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~ 489 (1134)
++|||- ...|++|..-+.|++|...++.-......+.+|...|..++|||..+. +|++||.|++|+|||++.+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 999993 335888888889999999987655444567789999999999998877 8999999999999999987 34
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. +.+..+..|..+|+++.|+|.....+.++. .|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D 369 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---ED 369 (440)
T ss_pred eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CC
Confidence 444 7899999999997765 59999999999999999864 456688999999999999997655444332 48
Q ss_pred CcEEEEeCCCCee----------------EEEecCc-cCcceEEEEEeCCC-CEEEEEeCCCeEEEE
Q 001160 567 SHLVEWNESEGAI----------------KRTYSGF-RKRSLGVVQFDTTR-NRFLAAGDEFQIKFW 615 (1134)
Q Consensus 567 ~~i~~wd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 615 (1134)
.+|.+||+....- .+-+-.| .+..+.-+.|++.- .++++.+.|| +.||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 8899999853110 1111122 22256678888765 4666677777 4444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-16 Score=185.07 Aligned_cols=288 Identities=25% Similarity=0.436 Sum_probs=220.1
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCC-cCeEEEEE-cCCC
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVW-GPDG 420 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~-spdg 420 (1134)
.|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ ++++
T Consensus 63 ~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 122 (466)
T COG2319 63 GHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSSPDG 122 (466)
T ss_pred eccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEECCCc
Confidence 4788999999999998 56777789999999998875 2221 22322 36777777 8888
Q ss_pred C-EEEEEeC-CCeEEEEEcCC-CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEEecCC
Q 001160 421 L-MLGVAFS-KHIVHLYTYNP-TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 421 ~-~las~~~-dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~h 496 (1134)
. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+.+|
T Consensus 123 ~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 123 NSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred ceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 8 5555444 99999999987 43333 6778999999999999999 7888875 999999999998999999999
Q ss_pred CCCeEEEEeeccCCcc-EEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 497 EAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
...|.+++++|.+ . .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++|+.
T Consensus 198 ~~~v~~~~~~~~~--~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~ 270 (466)
T COG2319 198 TDPVSSLAFSPDG--GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDL 270 (466)
T ss_pred CCceEEEEEcCCc--ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeee
Confidence 9999999998554 4 55556999999999888666655 466666664 3489999988886653 888999999
Q ss_pred CCCee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eC
Q 001160 575 SEGAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TS 652 (1134)
Q Consensus 575 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~ 652 (1134)
..... +..+.+|.. .+.++.|+|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+ ..
T Consensus 271 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (466)
T COG2319 271 RSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349 (466)
T ss_pred cCCCcEEEEEecCCc-cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC
Confidence 87664 444445544 8999999998889888888889999999888776666511222257888883332455555 56
Q ss_pred CCcEEEEECCCc
Q 001160 653 DNGIKILANSDG 664 (1134)
Q Consensus 653 dg~i~iw~~~~~ 664 (1134)
|+.+.+|+....
T Consensus 350 d~~~~~~~~~~~ 361 (466)
T COG2319 350 DGTIRLWDLRTG 361 (466)
T ss_pred CCcEEeeecCCC
Confidence 777888876544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-19 Score=171.62 Aligned_cols=408 Identities=12% Similarity=0.119 Sum_probs=258.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
-++|||+|+++|+++.- .+.|-|..+-+..+.. .--+.|..+.|..|... .|.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999766 7888888775544321 12456888999998875 566677899999999999998889
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+.....++.+++|+|++. ..|.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 988899999999998753 677778889999999998765544 3334455689999999999998864 1111123333
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.-.....++.+..... ..+.+.|+|||+.+++-. -+-.|+.|... -.+..++|+|.+++|++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2333445555655554 577899999998877632 22333332221 246789999999999999
Q ss_pred eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCc
Q 001160 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+.|+.+|+.|--+- +.+..+- |...+
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~---------------------------------------------------- 254 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSY---------------------------------------------------- 254 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhc----------------------------------------------------
Confidence 99999999775443 1111110 10000
Q ss_pred ccccccccccccccCc-cceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCC
Q 001160 731 SRLVDVKPRVAEDVDK-IKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 731 ~~~~~~~~~~~~~~~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.|.+ ..++.-.. .. -.-...++.|.|..- ...+|..........
T Consensus 255 ------------~dp~~~~~~ke~~-------~~-------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 255 ------------HDPTLHLLEKETF-------SI-------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQ 299 (447)
T ss_pred ------------cCchhhhhhhhhc-------ch-------hhhcccccccCCCcc---------ccCccccchhhhhhh
Confidence 0000 00000000 00 000012233333211 001111000000000
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeC---CeEEEEECCCCeEEEEecCCCCceEE
Q 001160 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASG---GKVSLFNMMTFKVMTMFMSPPPAATF 886 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~ 886 (1134)
...+ .....++.. +.+. + .-.+.-++||+|..++|+-.| +.+.+||++..+....+. ...+|..
T Consensus 300 -----~~pv---~~~~lkp~t-D~pn--P-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pira 366 (447)
T KOG4497|consen 300 -----MTPV---KVHKLKPPT-DFPN--P-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRA 366 (447)
T ss_pred -----hcce---eeecccCCC-CCCC--c-ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeE
Confidence 0000 000000000 1111 3 556778999999999999875 569999998776655544 5678999
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcE
Q 001160 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948 (1134)
Q Consensus 887 l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 948 (1134)
..|.| +...|+.......+++|......++.. .+..-.|..+.|.-+|..++-.+.|...
T Consensus 367 f~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 367 FEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 99999 777777777777899999765444443 3334679999999999999999988743
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=182.64 Aligned_cols=217 Identities=17% Similarity=0.283 Sum_probs=169.2
Q ss_pred EEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
|++......++++++..++|+|||+.. +++...+++ | ...|+++.+.-...|||
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h-~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--H-QSTVTYVDYNNTDEYIA 137 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--C-cceeEEEEecCCcceeE
Confidence 344444447899999999999998742 233344566 8 99999999999999999
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCC-ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccceEEEEEe
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRITGLAFS 933 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s 933 (1134)
+++ .|.|.|..+.++.....|....+ .|.-+.|||....+|.+++++|.|.+||+.....+.. ...|..+...|+|+
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS 217 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec
Confidence 999 68999999999887777775434 4669999996666788999999999999987766554 46899999999999
Q ss_pred cC-CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcceeccC
Q 001160 934 PT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLECSRSWS 1011 (1134)
Q Consensus 934 ~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~~~~~~ 1011 (1134)
|. ..+|++.|.|..|.+||....+....... . .+...++|+++|.+|++| ..|.|..||+.+.... +.
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P-v~ 287 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTY----S-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP-VA 287 (673)
T ss_pred CCccceEEEecccceEEEeecccccccceeee----c-----CCcceeeecCCceEEEeecCCceEEEEecccCCCC-ce
Confidence 95 56889999999999999987553322111 1 346899999999999996 6899999999333221 12
Q ss_pred CCCCCCCCeEEEEEccCC
Q 001160 1012 PKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 1012 ~~~~h~~~v~~v~~s~dg 1029 (1134)
....|...|++++|-+..
T Consensus 288 v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 288 VRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeeecccceeEEEeeecc
Confidence 235668889999997754
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-19 Score=181.01 Aligned_cols=278 Identities=12% Similarity=0.148 Sum_probs=208.4
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc-cce
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGE-LRQ 445 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~-~~~ 445 (1134)
...++|||+...+...... .......+.++.|+.... .+|+.+.|..+++|.-..... +..
T Consensus 11 gd~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPR 73 (673)
T ss_pred CCceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccce
Confidence 4589999987655432100 001122399999998775 233345688899997654311 222
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.....+. .-.|++...... ++++|+..+.|+|||++...+.+.+++|+..|+++.++... .+|++++..|.|.+
T Consensus 74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIII 147 (673)
T ss_pred eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEE
Confidence 2222222 334444444444 89999999999999999887888899999999999987655 89999999999999
Q ss_pred EEccCCCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-CEE
Q 001160 526 WLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRF 603 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 603 (1134)
..+.++.....+... +..|.-+.|+|..+.+++... .+|.|.+||+....++..+...+..+...++|+|.. ..|
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 999988877777766 445668999999888775443 388999999998888877765555588999999977 456
Q ss_pred EEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCC
Q 001160 604 LAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1134)
++.|.|..|++||....+....+... .+...++|+++|.+|++|+..|.|..||++..+..+..+..|
T Consensus 225 vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred EEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 77899999999999988777777543 367899999999999999999999999998775555544443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=170.29 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=210.0
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc-------CCC
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-------PDG 420 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s-------pdg 420 (1134)
-...+.|||||.- +.+-+.|..+.+|++...---...... ...+....+-......|...+|- |+.
T Consensus 51 f~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 51 FLKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGP------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hhccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCc------cccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 3457899999985 556788999999998532110000000 00000000111234567788875 678
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccC---CeeEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeee--EEe-
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG---GVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQ--YTF- 493 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~~~~~~--~~~- 493 (1134)
.++|+.+.+.-|++||.-+|+.......+ .|.. ...+++|+|||. .|+. +..+.|+++|+ +.|+.- +..
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 89999999999999999998765433222 3444 346899999999 5664 55789999998 455432 211
Q ss_pred ----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 494 ----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 494 ----~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+..+-|.+++|+|... ..++.++...++-+|.-...+....+.+|.+.|+.+.|.++|+.|++++. .+..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeE
Confidence 13367788999999754 68999999999999988888889999999999999999999999999985 46679
Q ss_pred EEEeCCC-CeeEEEecCccCcceEE--EEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCC
Q 001160 570 VEWNESE-GAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 570 ~~wd~~~-~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+++ +..+..+..+. ..++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc
Confidence 9999985 55666776665422222 44578899999999999999999998 67666666553 4789999999988
Q ss_pred EEEEEeCC
Q 001160 646 LLAVTTSD 653 (1134)
Q Consensus 646 ~l~~~~~d 653 (1134)
++|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=171.60 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=187.2
Q ss_pred cccccCCcCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCccceeeEEe--cccCCeeEEEEecCCC--cEEEEE
Q 001160 402 ALLNDAAISVNRCVWGP-----DGLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNK--QLCIVT 472 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~sp-----dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~--~~~l~s 472 (1134)
.+..+|+.+|..++|++ +-+.+|+++. ..+.+|.......++...... .|......++|+-|.. ..++|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34678999999999985 2345555544 468899887655333222222 3777788899976533 237888
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCcEEEEEE
Q 001160 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1134)
|+.-|.|+|.|+.++++...+.+|...|+.+.++|... ++++++|.|..||+|++++..++..+ .+|...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999999865 79999999999999999999998876 457789999999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE----------------------------ecCccCcceEEEEEeCCCC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRT----------------------------YSGFRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~ 601 (1134)
+++|.+++++|. |.+|.+|++...+.... -..|.. .|.|+.|- |+
T Consensus 190 ~~~gd~i~ScGm----Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd 262 (385)
T KOG1034|consen 190 SLDGDRIASCGM----DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GD 262 (385)
T ss_pred cCCCCeeeccCC----cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hh
Confidence 999999999997 77899999974321110 011222 45555554 57
Q ss_pred EEEEEeCCCeEEEEECC-CCee-------------EEEEeCCCCCCCcce--EEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 602 RFLAAGDEFQIKFWDMD-NMNM-------------LTTVDADGGLPASPR--LRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~~~v~~--~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++-|-++.|..|... -++. +..++... ..|+- .+|.|-+++||.|...|.|.+||+.+.
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence 88888888899999872 1221 22222222 23343 455667889999999999999999876
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-18 Score=171.27 Aligned_cols=301 Identities=18% Similarity=0.235 Sum_probs=215.0
Q ss_pred ccceEEEEEecCCc-ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 772 ASKVVRLIYTNSGL-SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..++.++.|.+++. .+++++.|..|++|.++.......+..+ .....+. .| ...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H-~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RH-TRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CC-cceeEEEEEcC
Confidence 45788999998877 8999999999999988754331111000 0111132 37 99999999999
Q ss_pred CCCEEEEEe-CCeEEEEECC--------C--------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 851 NDSYVMSAS-GGKVSLFNMM--------T--------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
+|..+|+|+ +|.|.+|-.. + ......+.+|...|..++|+| +++++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 999999999 6899999765 2 345567788999999999999 999999999999999999999
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee---eecCCCCCC------------CCcCce
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQS------------PLVGET 978 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~ 978 (1134)
|+.+..+..|...+..++|.|-++++++-+.|...+...+...+...... +....++.. ...--.
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 99999999999999999999999999999999877777766543322111 111111100 001235
Q ss_pred EEEECCCCcEEEEE-----ECCeE-----EEEeC-CCcceeccCCCCCCCCCeEEEEEcc------------------CC
Q 001160 979 KVQFHNDQTHLLVV-----HESQI-----SVYDS-KLECSRSWSPKDALPAPISSAIYSC------------------DG 1029 (1134)
Q Consensus 979 ~~~fspdg~~l~~~-----~d~~v-----~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~------------------dg 1029 (1134)
.++|+|||.+|++. .++.+ ++|+- ..+...... .+-..+...+.|+| -+
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 67899999999982 13333 45554 222221111 12255666777765 11
Q ss_pred CEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1030 LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
-.+|.+ ....|+|||.++-..++.....+|. ..+.++|++ ||..|+..|.||...+--+...|
T Consensus 313 lvfaiA-t~~svyvydtq~~~P~~~v~nihy~---------~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYS---------AITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEe-ecceEEEeccccccceEEEeeeeee---------eecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 234555 4568999999998888877655443 234788998 88999999999987777666555
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=173.49 Aligned_cols=249 Identities=17% Similarity=0.262 Sum_probs=194.7
Q ss_pred cccCCcCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCC-------------CccceeeEEecccCCeeEEEEecCCCcE
Q 001160 404 LNDAAISVNRCVWGPDG--LMLGVAFSKHIVHLYTYNPT-------------GELRQHLEIDAHVGGVNDIAFAHPNKQL 468 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg--~~las~~~dg~i~iwd~~~~-------------~~~~~~~~~~~h~~~v~~l~~s~d~~~~ 468 (1134)
..+|.+.++-+.-++-| .+.|+-+..|.|.||++... ...+.+.++.+|...=+.++|||--..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 45688888888887754 45666678999999998531 223456688899999999999994332
Q ss_pred EEEEEcCCCcEEEEECCCCeee---EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCc
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNW 543 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~ 543 (1134)
.++||.--+.|++|...+|... ..|.+|...|-.++|+|..+ ..|++||.||+|+|||++.+.. -.....|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 5899998999999999987654 35778999999999999987 6999999999999999998743 2344788899
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC---CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCC
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 619 (1134)
|+.+.|+.+..+|++|+. +|++.|||++. ++++..|+-|.. +|+++.|+|.. ..|+++|.|..|.+||+.-
T Consensus 305 VNVISWnr~~~lLasG~D----dGt~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD----DGTLSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeeEEccCCcceeeecCC----CceEEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999998888863 88999999985 678889999888 99999999976 5677788999999999863
Q ss_pred Ce----------------eEEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEE
Q 001160 620 MN----------------MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILA 660 (1134)
Q Consensus 620 ~~----------------~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~ 660 (1134)
.. +.+.+-.|.+...+..+.|++.- .++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 21 11223345455678899999853 4666666675 34443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=172.64 Aligned_cols=249 Identities=15% Similarity=0.198 Sum_probs=188.8
Q ss_pred CeEEEEEcC-----CCCEEEEE---eCCCeEEEEEcC-CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 410 SVNRCVWGP-----DGLMLGVA---FSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 410 ~V~~i~~sp-----dg~~las~---~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.|+..+|.. +.++||.. +..|...+.-+. +|+.-.....+.||.++|..++|+|-+.+ .||+||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 355555533 45666653 223334443332 33333344456799999999999998877 899999999999
Q ss_pred EEECCCC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC
Q 001160 481 VWDVVAG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 481 iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
||.+..+ +++..+.||+..|..++|+|... +.|++++.|.+|.+|++.+++....+. |..-|+++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998754 35678899999999999999876 799999999999999999999999888 89999999999999
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
.++++.+. |..|++||.++++.+..-.+|.+..-..+.|-.+|..+-+|- .+..+-+||..+-+.-..+..-+
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999874 778999999999999988888765555566888888444432 67889999987644322222222
Q ss_pred CCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCch
Q 001160 631 GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGV 665 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~ 665 (1134)
....|.---|.+|.++++.++ .|+.||.|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 223455556788888877655 49999999998763
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=202.33 Aligned_cols=301 Identities=13% Similarity=0.148 Sum_probs=222.2
Q ss_pred cccccCCChhhhhhhcccCCcceeEeeCCCCCCccccCcccc----ceEEEEecCCCCeeEEEEecCCCe---EEEEEeC
Q 001160 295 GMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLT----KTVVRTLNQGSNVMSMDFHPQQQT---ILLVGTN 367 (1134)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~----~~~~~~l~h~~~V~~v~~spdg~~---llasg~~ 367 (1134)
.+.|+......+......+.+ +..|+.+. .+.++..|... .+.+..+......+.++|.+.|.. ++|.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~-D~sfst~~-slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQF-DASFSTSA-SLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhcc-cccccccc-ccceeeecccCccccccccccccccccceeeeecccCCCccceeecccc
Confidence 455664443344444333322 23333222 33444443322 245666667789999999998876 6899999
Q ss_pred CCcEEEEEccCc---cccccccceeeccccccccccccccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCcc
Q 001160 368 VGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGEL 443 (1134)
Q Consensus 368 dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~ 443 (1134)
||.|.+||...- .... .......|.+.|..+.|++... +||+|+.||.|.|||+..-+..
T Consensus 89 dG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP 152 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP 152 (1049)
T ss_pred CCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence 999999998752 1110 0112567999999999999655 9999999999999999875433
Q ss_pred ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC--CeEEEEeeccCCccEEEEEecCC
Q 001160 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
.... -....+.|.+++|+..-.+ .|++++.+|.+.|||++..+.+-.+..|.+ .+..++|+|+.. ..+++++.|.
T Consensus 153 ~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd 229 (1049)
T KOG0307|consen 153 FTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDD 229 (1049)
T ss_pred CCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCC
Confidence 2111 1124567999999987776 899999999999999999988877766554 477899999876 4555555443
Q ss_pred ---eEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE
Q 001160 522 ---KIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 522 ---~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 596 (1134)
.|.+||++.... ...+.+|...|.++.|++.+ .++++++ .|++|.+|+.++++.+..+....+ .+..+.|
T Consensus 230 ~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg----kD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w 304 (1049)
T KOG0307|consen 230 SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG----KDNRIICWNPNTGEVLGELPAQGN-WCFDVQW 304 (1049)
T ss_pred CCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----CCCCeeEecCCCceEeeecCCCCc-ceeeeee
Confidence 499999987655 44667999999999999977 6777776 488899999999999999998555 8899999
Q ss_pred eCCCC-EEEEEeCCCeEEEEECCCCe
Q 001160 597 DTTRN-RFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 597 ~~~~~-~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+|... .+++++-||.|.|+.+.+..
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecCC
Confidence 99886 67778999999999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=171.40 Aligned_cols=234 Identities=15% Similarity=0.239 Sum_probs=184.8
Q ss_pred ccccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcc----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 403 LLNDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
.+.||+++|..++|+| +...||+|+.|.+|.||++..+... .....|.+|...|..++|+|...+ .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4679999999999999 7789999999999999999876543 345578899999999999998877 899999999
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEEEEECCCCCEE
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRL 556 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l 556 (1134)
+|.+||+.+|+.+-++. |.+.|+++.|+. ||.+|++++.|+.||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999998987 999999999966 559999999999999999999988887766654 556777888998 6
Q ss_pred EEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCee-EEEEeCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM-LTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1134)
++.+.++-.+.++-+||...-+. ...+... ..|.--.|.+|.+.++.+| .|+.||-|.+.+..+ +..+.....
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 66666666789999999876432 2333333 2466667888888887755 899999999987653 233322222
Q ss_pred CCCcceEEEccC
Q 001160 632 LPASPRLRFNKE 643 (1134)
Q Consensus 632 ~~~v~~~~~s~d 643 (1134)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 233355666653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=176.84 Aligned_cols=265 Identities=11% Similarity=0.130 Sum_probs=190.4
Q ss_pred CCeeEEEEecC-------CCeEEEEEeCCCcEEEEEccCccccccccceeeccc---cccccccccccccCCcCeEEEEE
Q 001160 347 SNVMSMDFHPQ-------QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS---AASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 347 ~~V~~v~~spd-------g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
....|++|..- |+ ++|.|+.|..|.|||+.-...+.- .+.+-... +.........-.+|++.|.+++|
T Consensus 174 afPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~ 251 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSW 251 (463)
T ss_pred CcchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHh
Confidence 34456666432 33 899999999999999863322110 00000000 00000111224579999999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEec
Q 001160 417 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFE 494 (1134)
Q Consensus 417 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~ 494 (1134)
+.+ ...||+||.|.+|++||+.++++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+..... ..+
T Consensus 252 n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w- 326 (463)
T KOG0270|consen 252 NRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW- 326 (463)
T ss_pred ccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-
Confidence 985 5589999999999999999998776 67789999999999998776 8999999999999999853322 222
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
...+.|-.++|.+... ..++++..||+++-+|++.. ++...+..|...|.++++++....+++.+. .++.+.+|+
T Consensus 327 k~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~ 402 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWK 402 (463)
T ss_pred EeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEe
Confidence 2467899999988765 67888899999999999987 667899999999999999998776554432 488999999
Q ss_pred CCCCee--EEEecCccCcceEEEEEeCCCCE-EEEEeCCCeEEEEECCCCeeE
Q 001160 574 ESEGAI--KRTYSGFRKRSLGVVQFDTTRNR-FLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 574 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+..... +..-...-. ...|.++.|+-.+ ++.||..+.+++||+.+...+
T Consensus 403 ~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 875433 221111111 4667778887755 555778888999999876543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-16 Score=173.38 Aligned_cols=631 Identities=12% Similarity=0.113 Sum_probs=355.4
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC------
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD------ 419 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd------ 419 (1134)
...-.++.|+|.| ++|.|+ ...|.+-|..+-+.+.. +.-|...|+.+.|.|-
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence 4457789999999 677776 45888889888877764 5669999999999873
Q ss_pred C------CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 420 G------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 420 g------~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
+ -+||++...|.|.+||...+..+. .++.|..++..++|-+ +.+. +|+.-....+|.+|+..+|+..
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF 148 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence 1 268888889999999999876554 6778899999999975 3333 5666666789999999999998
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC------ceeEecCC-CC---------------------
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAP-GN--------------------- 542 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~-~~--------------------- 542 (1134)
...........|+.+.|-....+.+ -+..|.+.+-+.-... ....+... ..
T Consensus 149 Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa 227 (1062)
T KOG1912|consen 149 WKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA 227 (1062)
T ss_pred eccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence 8777666677778888765534444 4445555555432111 11111111 00
Q ss_pred ----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEE
Q 001160 543 ----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 543 ----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd 616 (1134)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|++ ..+++.-.||.+.+|-
T Consensus 228 ~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 228 YFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 0113467786665554444 44599999998887777665554 45567777776 5688899999999997
Q ss_pred CCC----------------CeeEEEEeCCCCCCCcceEEEccC-CCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 617 MDN----------------MNMLTTVDADGGLPASPRLRFNKE-GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 617 ~~~----------------~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
.+. ++....+.......+ ...+..|. ...++.--.+|.+.+|.+.+|........+......
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVL 381 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccc
Confidence 654 222222221111111 22222342 445555566788889988876211111111111000
Q ss_pred CCCCCCCCCCCccccccCCCccc--ccccCCCCCCCC-------CCCCCcccCccCCCCccccccc--ccccccc-cCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNV--SAAIAPTLERPD-------RGPPAVSISSLGTIDGSRLVDV--KPRVAED-VDKI 747 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~i 747 (1134)
-|.+.+....+ -.++.++.++.. +..+.+...........-.+.+ -.++.|. .|+|
T Consensus 382 ------------pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 382 ------------PFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred ------------cccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 01111111111 123344444311 1111111111111111111111 1233344 4999
Q ss_pred ceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCC
Q 001160 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGT 827 (1134)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 827 (1134)
.++|+.+....... ..|...|.++.|..+...+-.+.+. .- +........+.+-|+.+|.
T Consensus 450 ~vvdvst~~v~~~f-------svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGl 509 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASF-------SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGL 509 (1062)
T ss_pred EEEEecchhhhhhh-------cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEccccc
Confidence 99999874332221 2378889999988777643332221 00 0000001123344666665
Q ss_pred ccccc-cCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEc-CC------------
Q 001160 828 LMTND-INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQ------------ 892 (1134)
Q Consensus 828 ~~~~~-~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~------------ 892 (1134)
..... +++ .. +.+|+.+..|..|+|++... +.-+.+||+++..+++...-.-.-|+.+.|+ |.
T Consensus 510 sk~fR~l~~-~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 510 SKRFRGLQK-PD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ 587 (1062)
T ss_pred ccccccCCC-CC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh
Confidence 44322 122 23 88999999999999999998 8899999998876655544334448889988 31
Q ss_pred ---CCcEEEEEeCCCcEEEEEcC-CceEEE-------EecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 893 ---DNNIIAIGMEDSSVQIYNVR-VDEVKT-------KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 893 ---~~~~lasg~~dg~i~iwd~~-~~~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
..+..+..+ +..+++.+. .+.... ..+...-.+.+|+| .+..|+.|..+|.+.+||+.......
T Consensus 588 ~sms~n~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg- 662 (1062)
T KOG1912|consen 588 SSMSENLVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG- 662 (1062)
T ss_pred hhhhhceeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC-
Confidence 012333333 223333322 111111 11111123445677 46689999999999999976543211
Q ss_pred eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001160 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
......+ .......-+-|....+++-....+.+||.+. ..+..+ .+..-...+..+.++.....++. .|.+
T Consensus 663 --~~d~p~~---ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l~--~d~~ 734 (1062)
T KOG1912|consen 663 --VRDSPDP---RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVLP--NDNK 734 (1062)
T ss_pred --ccCCCCc---hhhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceecC--CCCc
Confidence 1111111 1223344445654455555666788999843 333333 22222445555566555444443 4558
Q ss_pred EEEEeCCCcceeeecC
Q 001160 1041 IGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~ 1056 (1134)
+++-.+..........
T Consensus 735 ~Rf~~m~mks~~ll~~ 750 (1062)
T KOG1912|consen 735 ERFRVMPMKSPPLLPK 750 (1062)
T ss_pred eeEEeccccCCccccC
Confidence 8887777655444333
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-17 Score=160.26 Aligned_cols=210 Identities=16% Similarity=0.247 Sum_probs=158.0
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eee-----EEecC-CCCCeEEEEeec-----cCCccEEEEE
Q 001160 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQ-----YTFEG-HEAPVYSVCPHH-----KESIQFIFST 517 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-------~~~-----~~~~~-h~~~v~~i~~~~-----~~~~~~l~s~ 517 (1134)
...+.|+|||. .|++-+.|..+.+|++... ..+ .+++- ....|...+|-+ .++..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45689999999 8999999999999997521 110 11111 234466666542 2344789999
Q ss_pred ecCCeEEEEEccCCCceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC-CCCeeEEEecC------
Q 001160 518 AIDGKIKAWLYDYLGSRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNE-SEGAIKRTYSG------ 585 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~-~~~~~~~~~~~------ 585 (1134)
+.+.-|++||.-+++....+..-.+ .-.+++|+|||..|+++. ...|+++|+ +.|.-...+..
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-----krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-----KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-----cceEEEeeccCCCCCCcchhhhhcccc
Confidence 9999999999999888776654332 456899999999999985 678999999 55553322211
Q ss_pred ccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECCC
Q 001160 586 FRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANSD 663 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~~ 663 (1134)
...+.+.+++|+|... .+++|+....+-|+.-..+.++..+.+|. ..|+.+.|.++|+.|++|.. +-.|..||++.
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 1233788999999764 78889999999999999999999988665 48999999999999999887 67899999987
Q ss_pred chhhhhhhcCC
Q 001160 664 GVRLLRMLEGR 674 (1134)
Q Consensus 664 ~~~~~~~~~~~ 674 (1134)
....+..+..|
T Consensus 283 ~~~pv~~L~rh 293 (406)
T KOG2919|consen 283 SRDPVYALERH 293 (406)
T ss_pred ccchhhhhhhh
Confidence 75666555554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=161.65 Aligned_cols=378 Identities=14% Similarity=0.170 Sum_probs=246.8
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE-EeCCCeEEEEECCCCeeEE
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 624 (1134)
-.+|||+|++++++. +..+.+-|..+-+..+.|..-. .|.-+.|..|.-++++ ...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 357999999999997 4468888988877776666543 4667889998888777 4588899999999888777
Q ss_pred EEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
.++.. ...+.+++|||||+.+. +..-+-.|.+|.+.+.....
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----------------------------------- 128 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----------------------------------- 128 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-----------------------------------
Confidence 77643 45789999999996655 45558899999987651100
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC
Q 001160 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
+.. ....+..++|+||
T Consensus 129 ------------------------------------------------------------~~~----pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 129 ------------------------------------------------------------LPH----PKTNVKGYAFHPD 144 (447)
T ss_pred ------------------------------------------------------------ecc----cccCceeEEECCC
Confidence 000 1123478899999
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe---C
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS---G 860 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s---d 860 (1134)
|++.+..+.-.....+++. ..+-|. ++.. +.. . .-..+.+.|+|||..+|+-. +
T Consensus 145 g~f~ai~sRrDCkdyv~i~--------------~c~~W~-----ll~~-f~~--d-T~DltgieWsPdg~~laVwd~~Le 201 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQIS--------------SCKAWI-----LLKE-FKL--D-TIDLTGIEWSPDGNWLAVWDNVLE 201 (447)
T ss_pred CceeeeeecccHHHHHHHH--------------hhHHHH-----HHHh-cCC--C-cccccCceECCCCcEEEEecchhh
Confidence 9987766553111111100 001121 1111 111 1 45567899999999998764 2
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc--------------
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-------------- 926 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-------------- 926 (1134)
-.|..|.. .-.+..++|+| .+++|++|+.|+.+||.+--+.+....+- |-..
T Consensus 202 ykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~ 267 (447)
T KOG4497|consen 202 YKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETF 267 (447)
T ss_pred heeeeeee------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhc
Confidence 33433332 23578899999 99999999999999998766665544432 2111
Q ss_pred ------eEEEEEecCCCEEEEEcCCCcEEEEeCCCc--c----cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 927 ------ITGLAFSPTLNALVSSGADAQLCMWSIDKW--E----KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 927 ------i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~----~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..++.|.|. |-...+|..+.- + .++...++.+.....+.-++..++||+|..++++-.|
T Consensus 268 ~~~ql~~~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred chhhhcccccccCCC---------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence 123334332 222333433210 0 0111122222333334467889999999999999655
Q ss_pred ---CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 995 ---SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 995 ---~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
+.+.+||+....+...... ..+|....|.|....|+.+.....+++|.......++.-. . .-.
T Consensus 339 ~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~----------GF~ 404 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-K----------GFN 404 (447)
T ss_pred CCCceEEEEechhhhhhhhhhh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-C----------Cce
Confidence 5799999955555544444 5789999999998888888888889999988644443221 1 144
Q ss_pred cEEEeecCCCCCEEEEEeCCC
Q 001160 1072 PLVIAPHPSEPNQIALGMSDG 1092 (1134)
Q Consensus 1072 ~~~~~~~~~d~~~l~s~~~Dg 1092 (1134)
...+.|.- +|..++..+.|.
T Consensus 405 i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 405 IQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred eeeEEecC-CCcEEEEEcCCc
Confidence 55788887 678888888886
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-16 Score=169.26 Aligned_cols=473 Identities=12% Similarity=0.173 Sum_probs=297.1
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC----------CcEEEEEEcCCCc
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN----------KQLCIVTCGDDKM 478 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~----------~~~~l~sg~~d~~ 478 (1134)
..-.++.|+|.| +||.|+. ..|.+-|..+-+.+. .+.-|...|+.+.|.|.. .+++||++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 336788899887 6666654 458888887766665 677899999999998732 3468899999999
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCc--cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC-CCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI--QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-GTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 555 (1134)
|.+||...+..+..+..|..++..++|.+..+. ..|+.-....++.+|+..+++.............|+.+.|- .+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999999876553 46777788899999999999999988877777888888883 344
Q ss_pred EEEEeeCCCCCCcEEEEeCC-------CCeeEEEecCccC-----------c-----c--------eEEEEEeCCCCEEE
Q 001160 556 LFSCGTSKEGESHLVEWNES-------EGAIKRTYSGFRK-----------R-----S--------LGVVQFDTTRNRFL 604 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-----------~-----~--------v~~~~~~~~~~~l~ 604 (1134)
+..-+. .|.+.+-+.- .|+..+.-..|.+ . + ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 443332 3334433321 1222222111111 0 0 11256788776666
Q ss_pred EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC--CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 605 AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG--SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
.......+.++|++-..++.......+ .+.-+.+-|++ ..|++...||.+.+|--.........-..+-
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l------- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL------- 317 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh-------
Confidence 666788899999999988888877654 34456666654 5789999999999997543211111100000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
+.+- ...+.+ .+
T Consensus 318 --------------------------~~dl-------------------------------~~Q~~~-----------vr 329 (1062)
T KOG1912|consen 318 --------------------------SMDL-------------------------------GEQVHV-----------VR 329 (1062)
T ss_pred --------------------------cccc-------------------------------ccceEE-----------Ee
Confidence 0000 000000 00
Q ss_pred EeecCCcccccceEEEEEecC-CcceEEeeccCeeEEeecccccCCCCCCccccc--CcccccCCCCCcccccc----CC
Q 001160 763 ALRLPDSIAASKVVRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANV--APQLWQPPSGTLMTNDI----NE 835 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~w~~~~~~~~~~~~----~~ 835 (1134)
.. .+..+...+..|. ...++..-++|.+.+|.+..+..++++...... .+--++..+..+....+ ..
T Consensus 330 ~m------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~d 403 (1062)
T KOG1912|consen 330 PM------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDD 403 (1062)
T ss_pred ec------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhc
Confidence 00 1111222222333 334555556777888888765544443321110 00000111100000000 01
Q ss_pred CCCCCCceEEEEecc-----------CCC-------EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcE
Q 001160 836 SKPTEESAACIALSK-----------NDS-------YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~-----------dg~-------~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
+.| ....++....| -|+ ++|.|. .|+|.++|+.++...+.+..|++.|.++.|.. ..++
T Consensus 404 g~h-~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~ssl 481 (1062)
T KOG1912|consen 404 GSH-SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSL 481 (1062)
T ss_pred CCC-CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeE
Confidence 124 44444443332 222 577777 79999999999999999999999999999986 4444
Q ss_pred EEEEe---------CCCcEEEEEcCCceEE--EEec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001160 897 IAIGM---------EDSSVQIYNVRVDEVK--TKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 897 lasg~---------~dg~i~iwd~~~~~~~--~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
+-.+. .-+.+.|-|+.+|... +.++ ....+|+.+..|.-+++|+....|.-+.+||+++...+..+..
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~ 561 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL 561 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh
Confidence 43222 2245788899988532 2222 3456899999999999999999999999999988665433222
Q ss_pred ecCCCCCCCCcCceEEEEC
Q 001160 965 QAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fs 983 (1134)
..+ -++.+.|+
T Consensus 562 a~P--------~it~leWs 572 (1062)
T KOG1912|consen 562 ALP--------LITVLEWS 572 (1062)
T ss_pred cCC--------cEEEEeec
Confidence 211 26677777
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-16 Score=162.84 Aligned_cols=490 Identities=11% Similarity=0.125 Sum_probs=290.8
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeE-EEEe-----cCCCcEEEEEEcCCCcE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-IAFA-----HPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-l~~s-----~d~~~~~l~sg~~d~~i 479 (1134)
.|...|.|+.|+.+...+.+++.+-.+.-||+.+... ... .+ ...-|.. +..- ..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 3677788999999888877776666566666654322 110 00 1111111 1110 11111268888999999
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.|.+ +.++..+.+..|.+.+.+-.|+|++ .-|++++.||.|++|.- ++-....+......|+|++|.|+.+.++.|
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999998865 77999999999999973 333344455566799999999999988877
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
. .+.+.+=.+.....+-..+.|.+ -|.++.|++..+.+++||+|-..++||... ..+..-..|. -+|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cceeeee
Confidence 4 45688878877777888888887 899999999999999999999999999864 4444444443 4899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|.|| +.++.++.+ ++|+=..
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p---------------------------------------------------------- 254 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSP---------------------------------------------------------- 254 (737)
T ss_pred eccc-cceeeeeee-eeeecCC----------------------------------------------------------
Confidence 9999 566655543 4442100
Q ss_pred cccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEe
Q 001160 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLW 799 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw 799 (1134)
..+.|..++||+||..++.+++.|.+.+=
T Consensus 255 ---------------------------------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 255 ---------------------------------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------------------------------------CccceEEEEEcCCCceeeccccCceEEEe
Confidence 23567889999999999999998877653
Q ss_pred eccccc-CCCCCCc--ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE
Q 001160 800 KWQRTE-RNPSGKA--TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM 876 (1134)
Q Consensus 800 ~~~~~~-~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~ 876 (1134)
-.-... ..-+.+. .....+.+-|+.++..-...+ ...+...++ .-.+|+++....|++|.-........
T Consensus 284 ~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~------p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpii 355 (737)
T KOG1524|consen 284 YAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEF------PQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPII 355 (737)
T ss_pred eeehhhhhhccceeEeeccceEEeehhhhhHHHHhhC------ccceeeeee--ceeEEEEEeccEEEEEecCCccCcEE
Confidence 221111 1111111 111234455555554422111 445555543 34567777678889988776555555
Q ss_pred ecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe--cCcccc---eEEEEEecCCCEEEEEc--CCCcEE
Q 001160 877 FMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNR---ITGLAFSPTLNALVSSG--ADAQLC 949 (1134)
Q Consensus 877 ~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~---i~~l~~s~d~~~l~s~~--~D~~i~ 949 (1134)
+.+....+.-+.-+. ..+++ .+.-+|.+|..+. +..... .+..-. -..+... ...|+.-. ....+.
T Consensus 356 idgre~tr~lieq~e--k~fli--~dgsSi~lytyeg-R~~~np~~Pg~~~dlL~~rtlsLa--ndtLaird~ad~kvlh 428 (737)
T KOG1524|consen 356 IDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEG-RLHLNPRYPGSQIDLLTWRTLSLA--NDTLAIRDNADPKVLH 428 (737)
T ss_pred EeccccchhHhhhhh--hheEE--ecCcEEEEEEecC-ceecCCCCCCcccccccceeeecc--cceEEeecCCCCeeEE
Confidence 554333332222221 12222 2344677776542 222221 111100 0122222 22344322 234577
Q ss_pred EEeC-CCccccccee-eecCCCCCCCCcCceEEEE----CCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeE
Q 001160 950 MWSI-DKWEKLKSRF-IQAPAGRQSPLVGETKVQF----HNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPIS 1021 (1134)
Q Consensus 950 iWd~-~~~~~~~~~~-~~~~~~~~~~~~~v~~~~f----spdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~ 1021 (1134)
++|. .+|+.+..-- +. |. ..+..++. .++.+.++. -.++.+.+=.+ +...-..+... ..-|.
T Consensus 429 lFd~istgk~qgDgk~L~----hk---~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVh 498 (737)
T KOG1524|consen 429 LFDLISTGKRQGDGKSLR----HK---QQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVH 498 (737)
T ss_pred eccCCCCCcccCCccccc----hh---hhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhh
Confidence 8888 6665321100 10 00 12222222 222333333 33444444443 11111111111 45678
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 1022 ~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
.++|+.-.+ +++|-.|+++.||-..+-
T Consensus 499 tLawndttN-iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 499 TLAWNDTTN-ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred hhhhccccc-eeeeeccceEEEEEcCCc
Confidence 889965544 677889999999987753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=163.98 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=204.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCC-CcEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPG-NWCT 545 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~-~~v~ 545 (1134)
.+|++-..|.|++||..+++.+..|+++...++.+.|........+.+|+.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688888899999999999999999999999999999987655588999999999999999987765433 3333 4677
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee-EEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCe--
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMN-- 621 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1134)
+++.+-+++.++++..--..+-.+.+||++..+. +..+...+...|++++|+|.. +.|++||.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 8887778888888775445577899999998766 666654444499999999976 788899999999999997643
Q ss_pred --eEEEEeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCC
Q 001160 622 --MLTTVDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1134)
Q Consensus 622 --~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1134)
++.++. ....|.++.|..++ +.|.+-+..++..+|+++.+. ....+....... .
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~-----------------~-- 258 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSA-----------------D-- 258 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchh-----------------h--
Confidence 223332 22358899999877 457888889999999999884 222222211000 0
Q ss_pred CcccccccCCCCCCCCCCCCCcccCccCCCCcc-cccccccccccc-cCccceeccCCCCCccceeEeecCCcccccceE
Q 001160 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS-RLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
..+.-+. ..+-.+.. ....+...+++. .++..++-+.................+|..-|+
T Consensus 259 -------d~r~~~~-----------~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR 320 (376)
T KOG1188|consen 259 -------DLRKEDN-----------CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR 320 (376)
T ss_pred -------hHHhhhh-----------hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH
Confidence 0000000 00000111 011122334444 366666665544444444444555566888889
Q ss_pred EEEEecCCcceEEeeccCeeEEeec
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKW 801 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~ 801 (1134)
++.|...+..+.+|+.||.+.+|..
T Consensus 321 ~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 321 DILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHhhhcccceeeccCCCceEEEEec
Confidence 9999999999999999999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-16 Score=145.57 Aligned_cols=288 Identities=14% Similarity=0.180 Sum_probs=195.1
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..|.+-+++|.+++|+++..+|.|.+..+..-.. +.+ ...|+......+ .| .++++.++|. .
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa----------~~~gk~~iv~eq--ah-dgpiy~~~f~--d 72 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSA----------EPPGKLKIVPEQ--AH-DGPIYYLAFH--D 72 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---ccc----------CCCCCcceeecc--cc-CCCeeeeeee--h
Confidence 3455668899999999999999999998764211 000 011222221223 38 9999999998 4
Q ss_pred CEEEEEeCCeEEEEECCCCeE------EEEec-------CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 853 SYVMSASGGKVSLFNMMTFKV------MTMFM-------SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 853 ~~la~~sdg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
.+|++|+||.|+=|....... +.... .....|+++-..|..+.++ .++.|+.++-||+++|+...+
T Consensus 73 ~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 73 DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEE
Confidence 688888899999998654221 11111 1235689999999555555 455899999999999999999
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCC--CCcCceEEEECCCCcEEEEEECCeE
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
++||++.|-+++--.....+.||+.||++|+||.++++..+. +........ +..+-.-.+..-+..+|+++....+
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~l 229 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKL 229 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCce
Confidence 999999999998744445688999999999999999886542 222221111 0011122456667789999989999
Q ss_pred EEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEe
Q 001160 998 SVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1076 (1134)
Q Consensus 998 ~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1134)
.+|.+ ...+...+.. ..++..+.|-.| .++++++.++|.-|.+. |.+...++.. ++..+..+..
T Consensus 230 slwhLrsse~t~vfpi----pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--------s~~c~s~s~~ 294 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPI----PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE--------STACYSASWQ 294 (325)
T ss_pred eEEeccCCCceEEEec----ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC--------ccceeeeccc
Confidence 99999 5555554443 567888888554 57778888899999987 5555554432 1222323333
Q ss_pred ecCCCCCEEEEEeCCCcEEEEe
Q 001160 1077 PHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
-+| -++|-.++..+.+.+..
T Consensus 295 ~~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 295 TSP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred CCc--eEEEEecccceeeeeee
Confidence 334 35666677777777763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-16 Score=162.89 Aligned_cols=270 Identities=15% Similarity=0.208 Sum_probs=189.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--cCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--GPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--spdg~~ 422 (1134)
|...|.|+.|+.+.. ++.+++ |..+.+|.-.+.......... ....+. ..| +....- -.....
T Consensus 13 ~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p-------~df~pt---~~h---~~~rs~~~g~~~d~ 77 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLP-------DDFVPT---DMH---LGGRSSGGGKGSDT 77 (737)
T ss_pred cceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCC-------cccCCc---ccc---ccccccCCCCCcce
Confidence 566788999999987 555544 666666654433322110000 000000 011 000000 012347
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
++.++.||.+.+.+-.. +.-+ ...+|.+.|.+-.|+|||. -|+|.++||.|++|. ++|-...++.....+|.|
T Consensus 78 ~~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred EEEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 88899999999987543 2222 5668999999999999999 799999999999999 788766666667789999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++|.|+.+ ..+.+.+ +.+.+=-+.....+.....|.+-|.++.|++..+.+++++. |-..++||.. |..+..
T Consensus 151 ~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~ 222 (737)
T KOG1524|consen 151 ARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFT 222 (737)
T ss_pred EEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccccc
Confidence 99998764 4555443 45555566666778889999999999999999999999985 7889999965 666666
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
-..|.. +|++++|+|+ +.++.++. .+++ +.. ...+.|..++||+||..++.|+..|.+.+=.
T Consensus 223 S~~~ey-~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 223 SAAEEY-AITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred CChhcc-ceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 666665 8999999999 55555553 2333 211 1234789999999999999999998876543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-18 Score=176.98 Aligned_cols=250 Identities=14% Similarity=0.180 Sum_probs=190.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-----PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
+..|.+.|..++|.|-...|++++.||++.+|+++ ....+.++.+|.+|.++|.|+++.++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 56799999999999999999999999999999993 2344667789999999999999999999 8999999999
Q ss_pred EEEEECCC------C----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC--CCcEEE
Q 001160 479 IKVWDVVA------G----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTM 546 (1134)
Q Consensus 479 i~iwd~~~------~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~ 546 (1134)
|+.|++.. . .....+.||.+.|+.++++... ..|++++.||++++|+...... ..+... .+...+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99996541 1 1234678999999999999887 6799999999999998765544 333222 223344
Q ss_pred EEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------CcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 547 MAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 547 ~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+.+.... ...++... .+.-.+++...+..+..+.... ...++-+..+|.+.+.+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 5443332 12222111 2223334444444444333221 12466788899999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9999888766 447899999999999999999999999998665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-17 Score=153.91 Aligned_cols=308 Identities=13% Similarity=0.152 Sum_probs=198.2
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
+...+..+.+.++++.|-.+++ |+++. ..|.+.+|++.+......++++....|+.+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~----~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGL----SVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccc----ccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4455667888999999988877 55654 37889999999999999999766668999988886 578888899999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-cEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.+|++..+..+..-. -.++++-|.+-. +...+... ..-.++-+...+ .....+..
T Consensus 80 ~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~g~---------------- 135 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDGGD---------------- 135 (323)
T ss_pred EEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhhccCc----------------
Confidence 999998755443322 123444443311 11111110 111111111100 00000000
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc
Q 001160 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
.-.+.+-+-+ ..+.
T Consensus 136 ----------------------------------------------------~tqv~i~dd~--------------~~~K 149 (323)
T KOG0322|consen 136 ----------------------------------------------------TTQVQIADDS--------------ERSK 149 (323)
T ss_pred ----------------------------------------------------cceeEccCch--------------hccc
Confidence 0001111100 0112
Q ss_pred ccceEEEEEe-cCCc--ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001160 772 ASKVVRLIYT-NSGL--SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 772 ~~~v~~~~~s-~~g~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
.+.+.+..+. .++. .+++|..+|.+.+||+.......+-. ..| .+.... ..| ..++.++.|
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~------kv~~~~--ash-~qpvlsldy 213 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSS------KVESPN--ASH-KQPVLSLDY 213 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccc------ccccch--hhc-cCcceeeee
Confidence 2334443322 1222 35677789999999987642211100 111 111112 227 899999999
Q ss_pred ccCCCEEEEEe-CCeEEEEECCC--CeE--EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMT--FKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
.+.-..=++|+ +..+..|+++. +.+ .....-....|..+.+-| |++++|++++||.||||..++...+..++.|
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhh
Confidence 87655556666 77888888763 222 222223355688999999 9999999999999999999999999999999
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
++.|.+++|+||...+|+++.|++|.+|++
T Consensus 293 sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=169.59 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=165.1
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECC-CCeE--EEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMM-TFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~ 913 (1134)
......++++||+++|++++ ++.|.+|++. +++. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34566789999999988775 6889999997 3432 22222 233567899999 788777765 488999999974
Q ss_pred -c---eEEEEecCcccceEEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccc---eeeecCCCCCCCCcCceEEEECCC
Q 001160 914 -D---EVKTKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKS---RFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 914 -~---~~~~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
+ +.+..+.+ .....+++++||+++++++ ..++.|.+||+.+...+.. .......+ ..+..++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 3 22333332 2345678899999988554 4679999999987432211 11111222 34678999999
Q ss_pred CcEEEEE--ECCeEEEEeCC--Ccce---eccCCC---CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceeee
Q 001160 986 QTHLLVV--HESQISVYDSK--LECS---RSWSPK---DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 986 g~~l~~~--~d~~v~vwd~~--~~~~---~~~~~~---~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~~~~~~~~~ 1054 (1134)
|++++++ .+++|.+|+++ ...+ ..+... ..+......+.|+|||++|+++.. ++.|.+|+++......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 37899999994 2222 111111 011223346899999999998864 78999999965432222
Q ss_pred cCCcccccccccCCCCccEEEeecCCCCCEEEEEeC-CCcEEEEecCCCccccC
Q 001160 1055 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS-DGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~~~~~~~~~~ 1107 (1134)
+..+. +.+ ..+..+.++| ||++|++++. +++|.+|++......+.
T Consensus 266 ~~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 266 FEGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EeEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 22111 111 3455788999 7788887665 89999999865443343
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=143.75 Aligned_cols=281 Identities=18% Similarity=0.261 Sum_probs=191.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|.+-++||.++ +|++|..+|.|.+..+..-..-.. ..+...++ ....+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa-------~~~gk~~i--v~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA-------EPPGKLKI--VPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc-------CCCCCcce--eeccccCCCeeeeeee--hhheeecc
Confidence 466778999998 788899999999999864321110 00000111 1136899999999998 45676764
Q ss_pred CCCeEEEEEcCCCCc---cceeeEE--eccc-----CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 428 SKHIVHLYTYNPTGE---LRQHLEI--DAHV-----GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~---~~~~~~~--~~h~-----~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
||.|+-|....... .+...+. ..|. -.|+++...|... -+++++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998765432 1110011 1122 2588999998877 45666679999999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC----------CCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP----------GNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
+.|.++.-.... ..+++|+.||++|+||.++.+....+... +.+|-+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 999999864333 57999999999999999998887755332 235555554 556888875 45
Q ss_pred cEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC-CE
Q 001160 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG-SL 646 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~ 646 (1134)
.+.+|.++..++...|.-.. .+..+.|.. +.+++++..+.|.-|.+. |.....++...+ ..++..|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 69999999988888776543 566677764 478888888899999874 444444433222 33444444332 34
Q ss_pred EEEEeCCCcEEEE
Q 001160 647 LAVTTSDNGIKIL 659 (1134)
Q Consensus 647 l~~~~~dg~i~iw 659 (1134)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455556666665
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=157.73 Aligned_cols=293 Identities=11% Similarity=0.131 Sum_probs=211.8
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.|.+-|+++.||.+++ +||+|+.|..+++|++...-.... ..+++. .-..|...|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEccCCee
Confidence 34888999999999997 899999999999999874322111 001111 02346689999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEeccc---CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-ee--EEecCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHV---GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ--YTFEGH 496 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~---~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~--~~~~~h 496 (1134)
+.+|+.+++|...|+.+.+.+. .+ .|. +.|+.+..+|... .+++.+.++.|.+||.+... .+ ..+...
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~---V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIY---VA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred EecCCCcceeEeeecccceeee---ee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 9999999999999999977654 22 344 4899999999977 89999999999999987654 21 222234
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-------ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
......+.|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 45677888998765 6889999999999999987654331 1111223357789999999987643 2334
Q ss_pred EEEeCCCCee-EEEecCccC-----cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----------------------
Q 001160 570 VEWNESEGAI-KRTYSGFRK-----RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------------------- 621 (1134)
Q Consensus 570 ~~wd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------- 621 (1134)
.+||+.+..+ +..+..... ..+.+++|..|. .+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 5678776443 333331111 146678887665 48999999999999875311
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+..+.+| ..-++.+.|+|...+|++.+-.+.+++|...
T Consensus 348 ~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 23344555 3467899999999999999999999999753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=149.60 Aligned_cols=290 Identities=15% Similarity=0.269 Sum_probs=208.3
Q ss_pred EEEEecCCCCeeEEEEe--cCCCeEEEEEeC----CCcEEEEEc--cCccccccccceeeccccccccccccccccCCcC
Q 001160 339 VVRTLNQGSNVMSMDFH--PQQQTILLVGTN----VGDISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~s--pdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 410 (1134)
.+......-.+.++.|| |+.+..||.|+. .+.|.|-.+ .+++.+...+ ..|..+
T Consensus 37 eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP 98 (364)
T KOG0290|consen 37 EIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP 98 (364)
T ss_pred eEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence 35555556688999998 566667888874 345555544 3444443322 258999
Q ss_pred eEEEEEcCCCC-----EEEEEeCCCeEEEEEcCCCC-ccceeeEE-----ecccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 411 VNRCVWGPDGL-----MLGVAFSKHIVHLYTYNPTG-ELRQHLEI-----DAHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 411 V~~i~~spdg~-----~las~~~dg~i~iwd~~~~~-~~~~~~~~-----~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
++.+.|.|+.. +||+++ ..+++|.+...+ .+.....+ ..+..++++..|+.-..+ +|.+++-|-+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence 99999999863 666653 359999987422 11111111 246779999999886655 89999999999
Q ss_pred EEEECCCCee---eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCC--CCcEEEEEECCCC
Q 001160 480 KVWDVVAGRK---QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAP--GNWCTMMAYSADG 553 (1134)
Q Consensus 480 ~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~~~ 553 (1134)
.|||+++|.. ...+-.|...|..++|... .-+.+++.+.||.+|++|++..+.-. .+... ..+...++|++..
T Consensus 176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999743 3456789999999999873 34799999999999999999766533 23322 4578889998855
Q ss_pred -CEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCee------EE
Q 001160 554 -TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNM------LT 624 (1134)
Q Consensus 554 -~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------~~ 624 (1134)
+++++... ....|.+.|++. ..++..+++|.. .|+.++|.|.. ..++++|+|..+.+||+...-. +.
T Consensus 255 pnymATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 255 PNYMATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred chHHhhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 55666554 245699999986 567889999988 99999999976 6788899999999999976332 11
Q ss_pred EEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 625 TVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
.+. ....|+.+.|++ .+.+++.+... .+.+
T Consensus 331 ay~---a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 331 AYT---AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred hhh---ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 222 234789999996 66788877654 4443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-18 Score=183.81 Aligned_cols=278 Identities=16% Similarity=0.277 Sum_probs=215.7
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.|.+.|+|+.|...|. ++++|+.|..|+||...++.++.+ ..||.+.|+.++.+.+..+
T Consensus 187 lgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred Hhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhhhh
Confidence 34888999999999997 678999999999999999999876 7899999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE---ec-CCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT---FE-GHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~---~~-~h~~ 498 (1134)
+|+++.|..|++|.+.++..+. .+.+|.+.|++++|+|- .+.+.||++++||.+-...++. +. ....
T Consensus 247 iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccccc
Confidence 9999999999999999998776 77899999999999985 3678899999999771111111 11 1224
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC-EEEEEeeCCCCCCcEEEEeCCCC
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.+.++.|. .++..+++++.|+.-..|.+..... +...+.-+.++.+-. +.+++- .+..+.+|++.+|
T Consensus 318 ~~~s~~~~--~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 318 LVDSILFE--NNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTG 385 (1113)
T ss_pred ceeeeecc--ccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccc
Confidence 45555553 3457899999999988886542111 111122222222322 222222 3667899999999
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
...+.+.+|.+ .+..+.++|-+..++ +++.||...|||+-.|.+++..... ...+...+||+||..++...+-|.+
T Consensus 386 ~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 386 QLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCce
Confidence 99999999988 899999999886655 5899999999999999888877633 2367788999999999998888999
Q ss_pred EEEECCCc
Q 001160 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
.|.....+
T Consensus 463 ~i~g~gqs 470 (1113)
T KOG0644|consen 463 YILGTGQS 470 (1113)
T ss_pred EEeccCCC
Confidence 99876544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=167.58 Aligned_cols=241 Identities=13% Similarity=0.172 Sum_probs=165.3
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.||.+.|+|++|+.||.+||+|+.|-.+.|||.-..+.+..+. .||...|.++.|-|....-.+++|..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 478999999999999999999999999999999998766655433 489999999999997555589999999999999
Q ss_pred ECCC----------CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-ee---------EecCCCC
Q 001160 483 DVVA----------GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RV---------DYDAPGN 542 (1134)
Q Consensus 483 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~---------~~~~~~~ 542 (1134)
|+.. ....+.+..|...|..++..|.+. ..+.+++.||+|+-+|++.... .. .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9984 234455667899999999877654 7999999999999999986321 11 1111122
Q ss_pred cEEEEEECCCCCE-EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC------cceEEEE-EeCCCCEEEEEeCCCeEEE
Q 001160 543 WCTMMAYSADGTR-LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQ-FDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 543 ~v~~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~-~~~~~~~l~~~~~dg~i~i 614 (1134)
...++.++|...+ |++|+. +...++||.+... ..+..... ....|+. |+|.+- ...+|.+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~-- 269 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL-- 269 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc--
Confidence 5678999997665 555553 7789999964211 11111110 0111221 222210 0111110
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhc
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
.... ..++-++|+|+|.-|++.-....|+++|+..++.....+.
T Consensus 270 --------~~~~------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~~ 313 (758)
T KOG1310|consen 270 --------DRYI------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYFL 313 (758)
T ss_pred --------ccce------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeecC
Confidence 0000 1246789999998877777777999999988755544443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=154.45 Aligned_cols=217 Identities=19% Similarity=0.338 Sum_probs=165.7
Q ss_pred ccceEEEEec--CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 335 LTKTVVRTLN--QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 335 ~~~~~~~~l~--h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
.+.+++..|. +-+.|.|+.|.|++..+++. .|..|.+|+++.+..+.. .+ ....-.+|....+
T Consensus 110 ~tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ft 174 (370)
T KOG1007|consen 110 STLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFT 174 (370)
T ss_pred chhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceec
Confidence 3456666776 45699999999999875543 389999999998876321 11 0011224677889
Q ss_pred EEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-Cee
Q 001160 413 RCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRK 489 (1134)
Q Consensus 413 ~i~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~ 489 (1134)
+-+||| ||+.+++. .|+++..||+++..+...+ -.+|...|..+.|+|+-+. +|+||++||.|+|||.+. ..+
T Consensus 175 sg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred ccccCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCcc
Confidence 999999 88888887 6788999999987665432 2478899999999999877 899999999999999875 567
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-----------------------------CceeEecCC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-----------------------------GSRVDYDAP 540 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-----------------------------~~~~~~~~~ 540 (1134)
+.++.+|...|+++.|+|..| +++++++.|..|.+|....- +.+..+..|
T Consensus 251 v~el~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh 329 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH 329 (370)
T ss_pred ccccCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc
Confidence 889999999999999999887 89999999999999965321 112245667
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
...|++++||.-..++++.-. -||++.|=.+
T Consensus 330 EDSVY~~aWSsadPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 330 EDSVYALAWSSADPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred ccceEEEeeccCCCeeEEEec---cCceEEeecC
Confidence 788999999988777664331 2666665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-15 Score=168.46 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=173.8
Q ss_pred ccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEee-ccCeeEEeecccccCCCCCCcccccC
Q 001160 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
++...++.|.+|++.+.......+.+. .......++++|++++|++++ .++.|.+|++..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------- 66 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------- 66 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------------
Confidence 334567999999996422112222222 224567889999999887765 468888887641
Q ss_pred cccccCCCCCcc-ccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCC-C---eEEEEecCCCCceEEEEEc
Q 001160 818 PQLWQPPSGTLM-TNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-F---KVMTMFMSPPPAATFLAFH 890 (1134)
Q Consensus 818 ~~~w~~~~~~~~-~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~s 890 (1134)
++... ..... . ......++++|+|+++++++ ++.|.+|++++ + +.+..+. +.....+++++
T Consensus 67 -------~g~l~~~~~~~---~-~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~ 134 (330)
T PRK11028 67 -------DGALTFAAESP---L-PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANID 134 (330)
T ss_pred -------CCceEEeeeec---C-CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeC
Confidence 11110 00001 1 33456799999999999887 79999999974 2 2233333 23456788999
Q ss_pred CCCCcEEEE-EeCCCcEEEEEcCCceEEE-------EecCcccceEEEEEecCCCEEEEEcC-CCcEEEEeCCC--cccc
Q 001160 891 PQDNNIIAI-GMEDSSVQIYNVRVDEVKT-------KLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDK--WEKL 959 (1134)
Q Consensus 891 ~~~~~~las-g~~dg~i~iwd~~~~~~~~-------~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~--~~~~ 959 (1134)
| +++++++ ...++.|.+||+.+...+. .... ......++|+|||++++++.. +++|.+|+++. ++..
T Consensus 135 p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~ 212 (330)
T PRK11028 135 P-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE 212 (330)
T ss_pred C-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE
Confidence 9 7777754 4566999999997633221 1111 234578999999999988775 89999999974 2211
Q ss_pred cceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
....+...............++|+|||++++++ .++.|.+|++ ++........... ......++|+|||++|+++
T Consensus 213 ~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 213 CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEE
Confidence 111111111110001223468999999999996 3678999998 2222211111000 1245578999999999987
Q ss_pred ec-CCcEEEEeCC
Q 001160 1036 FC-DGAIGVFDAE 1047 (1134)
Q Consensus 1036 ~~-dg~I~vwd~~ 1047 (1134)
+. +++|.+|+++
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 76 8999999875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=153.89 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=199.4
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEEE
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVW 416 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~~ 416 (1134)
+...|. |.+.|+++.|-.+++ |.+|...|.|++|++++...+.. +. -|...|+.+.-
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~lq~ 64 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITNLQS 64 (323)
T ss_pred CeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeeceee
Confidence 334444 888999999999996 56899999999999998765532 22 36778999998
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCC-----CcE--EEEEEcCCC-cEEEEECCCCe
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPN-----KQL--CIVTCGDDK-MIKVWDVVAGR 488 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-----~~~--~l~sg~~d~-~i~iwd~~~~~ 488 (1134)
-|+ ..|.+-+.|+.+.+|++..+.-+. -|.-.++++.|++-. +.. .++.-++.. .+++-|.....
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 888 567788899999999998754332 355566777776532 100 111111100 01222221111
Q ss_pred eeEEe----cCCCCCeEEEEeeccCC-ccEEEEEecCCeEEEEEccCCCcee----------EecCCCCcEEEEEECCCC
Q 001160 489 KQYTF----EGHEAPVYSVCPHHKES-IQFIFSTAIDGKIKAWLYDYLGSRV----------DYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 489 ~~~~~----~~h~~~v~~i~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~~ 553 (1134)
.+... .+..+.+.+..+..... .-++++|..+|.+.+||+.++.... ....|..+|.++.+.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 12111 12345666666432221 1356778899999999999874433 334567789999998766
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCC--Cee-EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001160 554 TRLFSCGTSKEGESHLVEWNESE--GAI-KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
..=++++. +..+..|++.. +.+ +.....-....+..+.+-||++.++++|.|+.||+|+.++.+++..+..|.
T Consensus 218 ~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs 293 (323)
T KOG0322|consen 218 DRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS 293 (323)
T ss_pred cCCcCCCc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh
Confidence 55555554 44577887763 222 222222222367789999999999999999999999999999999999886
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..|++++|+|+..++|+++.|+.|.+|++
T Consensus 294 --agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 --AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 48999999999999999999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=146.35 Aligned_cols=242 Identities=11% Similarity=0.113 Sum_probs=186.9
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
...+..+.|+.|...|..|+.|| -++|..+...... ........|.-+-|+..= +.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 34577888999999999999999 6788876643321 111122345555665431 13334433456999999988
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC---CCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
..++.+. ....|.++.++. ++|+++-.+. |.+||+.+.+.+..+.. +...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 8888775 566799998854 5677666555 99999998887775543 3445777777777789987643 2
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|..++++++.|+ ||++.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 367799999999999999999887 9999999999999999998887 79999999999999976555567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCc
Q 001160 644 GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++|++.++.++|.+|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998754
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=155.92 Aligned_cols=275 Identities=12% Similarity=0.138 Sum_probs=196.4
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~las~~~dg~i~iwd~ 437 (1134)
..+|++-..|.|++||..+++.+.. ++++...++.++|.. ....+.+|+.||+|++||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 3677888899999999999887764 678888999999987 4678999999999999999
Q ss_pred CCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEc----CCCcEEEEECCCCee-eEE-ecCCCCCeEEEEeeccCC
Q 001160 438 NPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG----DDKMIKVWDVVAGRK-QYT-FEGHEAPVYSVCPHHKES 510 (1134)
Q Consensus 438 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~----~d~~i~iwd~~~~~~-~~~-~~~h~~~v~~i~~~~~~~ 510 (1134)
+........ .+.+|. .+..+++..-.+. .+++|. .|-.|.+||++..+. +.. ...|.+.|+++.|+|+.+
T Consensus 102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 987665433 344555 4666777665565 677765 467899999998766 554 356999999999999876
Q ss_pred ccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 511 IQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 511 ~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
++|++||.||-|.++|+..... +.....+...|.++.|..++ +.+.+.+ ......+|+++.+.....+...
T Consensus 179 -nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 179 -NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred -CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccCceeEEEccCCChhhcccCc
Confidence 8999999999999999976533 23344566789999999888 3454444 3667999999988765554332
Q ss_pred cC------------cceEEEEEeCCCCEEEEEeC-CCeEEEEECC---CC---eeEEEEeCCCCCCCcceEEEccCCCEE
Q 001160 587 RK------------RSLGVVQFDTTRNRFLAAGD-EFQIKFWDMD---NM---NMLTTVDADGGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 587 ~~------------~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l 647 (1134)
.- ..|.+. ...++..++.++. -+...++-+. ++ +.+..+.+ ++..-|.++.|...+.++
T Consensus 254 ~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 254 DVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVL 331 (376)
T ss_pred cchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccccee
Confidence 10 012111 1223345555443 5555555433 22 23333433 234467888998889999
Q ss_pred EEEeCCCcEEEEECCC
Q 001160 648 AVTTSDNGIKILANSD 663 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1134)
.+|+.||.+.+|....
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-17 Score=171.68 Aligned_cols=267 Identities=13% Similarity=0.201 Sum_probs=192.5
Q ss_pred Eec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCC
Q 001160 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1134)
Q Consensus 342 ~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg 420 (1134)
++. |.+.|+.++|.|... .|++++.||++.+|+++....-... ...+...+.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCCc
Confidence 444 889999999999998 6889999999999999432111110 111222367899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCC-------ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 421 LMLGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
..+.+|+.||+|+.|++.... .......+.||.+.|+.+++++... .|++++.||++++|+.....+ .+|
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-ccc
Confidence 999999999999999664221 1122336779999999999999888 799999999999999776655 444
Q ss_pred cCC--CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------CCcEEEEEECCCCCEEEEEeeCCC
Q 001160 494 EGH--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 494 ~~h--~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
... .+.-.++.+..... ...++...-+.--+.++........+... ...+..+.+.|.+...+++..
T Consensus 434 ~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he--- 509 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE--- 509 (577)
T ss_pred CCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc---
Confidence 332 22233444432211 12222222222233333333333333221 135678888999988888874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 -d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 -DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred -CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 78899999999999999999988 8999999999999999999999999999877666555443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-16 Score=148.64 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=185.3
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCC-------CcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCV 415 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~ 415 (1134)
.|.++|+.++-+|-.+++|+++..+ ..+.||.+....... +...|+ ....+. .+-+.|.|+.
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE--------~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLE--------CVASLDTEAVGKINCVE 130 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhh--------HhhcCCHHHhCceeeEE
Confidence 3678999999999999899988653 257788876432210 000010 001122 4556899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceee---EEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~---~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
|.|++..+|+-. |..|.+|+++.+..+.... .-.+|....++-+|+| ||. .+++.+ |+++..||+++.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhh
Confidence 999999999875 7889999999876532111 1113566788899998 566 556554 899999999998877
Q ss_pred EEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEE-EEeeCCCCCC
Q 001160 491 YTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGES 567 (1134)
Q Consensus 491 ~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~ 567 (1134)
..+. .|...|..+.|+|+.. .+|++|+.||.|++||.+..+. +..+..|.++|.++.|+|.-..|+ +++. |.
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds 281 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DS 281 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----Cc
Confidence 6664 5888999999999865 6899999999999999987665 558889999999999999766555 5553 66
Q ss_pred cEEEEeCCCC-----------------------------eeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEEC
Q 001160 568 HLVEWNESEG-----------------------------AIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDM 617 (1134)
Q Consensus 568 ~i~~wd~~~~-----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~ 617 (1134)
.|.+|....- ..+.++..|.+ .|.+++|+.-..++ ++-+.||.+.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 7888754210 12345667777 89999999876664 55789999988665
Q ss_pred C
Q 001160 618 D 618 (1134)
Q Consensus 618 ~ 618 (1134)
.
T Consensus 361 ~ 361 (370)
T KOG1007|consen 361 P 361 (370)
T ss_pred C
Confidence 4
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=170.74 Aligned_cols=271 Identities=16% Similarity=0.213 Sum_probs=199.4
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
.+|..... ..+-..+....+|+|++|+|....++|.|.++|+|.+||+..+....... .......|
T Consensus 225 ~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh 290 (555)
T KOG1587|consen 225 LVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSH 290 (555)
T ss_pred EEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccC
Confidence 34444443 67777778888999999999999999999999999999999876531100 11124569
Q ss_pred CcCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCccceeeEEe---------cccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 408 AISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 408 ~~~V~~i~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..+|+.+.|-.+-. -+++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+++
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~ 369 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEE 369 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCC
Confidence 99999999987544 59999999999999886533211111111 12246899999987766 78999999
Q ss_pred CcEEEEE---CCCCe-----eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCceeEecCCCCcEEEE
Q 001160 477 KMIKVWD---VVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 477 ~~i~iwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~ 547 (1134)
|.|.--+ ...+. .+..+..|.++|.++.++|-.. ..+++++ |.++++|.-. .......+..+...++++
T Consensus 370 G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 370 GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred cEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence 9988733 22222 1235566899999999988764 3444444 9999999887 556666777777789999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCC--CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESE--GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+|||-...++++. +.+|.|.+||+.. ..++.+.... ....+.+.|++.|+.+++|...|.+.+|++..
T Consensus 448 aWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 448 AWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999887777665 4689999999974 3445554444 32677888999999999999999999999864
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=165.82 Aligned_cols=296 Identities=17% Similarity=0.254 Sum_probs=232.0
Q ss_pred EEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-
Q 001160 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP- 418 (1134)
Q Consensus 341 ~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp- 418 (1134)
..|. |.+-|+.|.|...|. +|++|+.|..|.+||+..+..... ...+|...|.-..|-|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPF 196 (559)
T ss_pred hcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCC
Confidence 3444 899999999999998 899999999999999998876543 2568999999889988
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---c
Q 001160 419 -DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1134)
Q Consensus 419 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---~ 494 (1134)
+.+.+++++.||.+++=.+...+.+.....+..|.++|.-++.-|+... -|.+++.|+.+.-.|+.++.+...+ .
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeec
Confidence 5678999999999999887766655555567789999999999999877 7999999999999999887654332 2
Q ss_pred CCCC---CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce------eEec------CCCCcEEEEEECCCCCEEEEE
Q 001160 495 GHEA---PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR------VDYD------APGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 495 ~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.+.. ....++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-+++.
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred cCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 467788888754 58999999999999998754332 1111 223378999999777666665
Q ss_pred eeCCCCCCcEEEEeCCC--C----------eeEE-EecCccCc-ceEEEE-EeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001160 560 GTSKEGESHLVEWNESE--G----------AIKR-TYSGFRKR-SLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
.. |-.|+++.... | ..+. .+++|... .|..+- |.|...++++|++-|.|.||+-.+++.+.
T Consensus 355 Yn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 355 YN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred ec----ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 43 55688885432 3 2233 37888653 355554 57888999999999999999999999999
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+.+..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 431 ~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 431 FMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred Hhhcccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9887766 689999999999999999999999998743
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=150.66 Aligned_cols=300 Identities=14% Similarity=0.174 Sum_probs=217.6
Q ss_pred eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC------CCeeEEEecCccCcceEEEEEeCCCCEEEEEeC
Q 001160 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 535 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
..+..|.+.|.++.|+.++++|++++. |..+++|++. +.+++.....|+...|.|++|...+..+++|+.
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 345678889999999999999999985 7789999975 346666666666568999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCC
Q 001160 609 EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1134)
+++|...|+++.+.+..+........|+.+..+|-.+.+++.+.++.|.+||....+.....+-
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~---------------- 189 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL---------------- 189 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee----------------
Confidence 9999999999999998887766667899999999999999999999999999876521110000
Q ss_pred CCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCC
Q 001160 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1134)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1134)
..
T Consensus 190 ---------------------------------------------------------------~A--------------- 191 (609)
T KOG4227|consen 190 ---------------------------------------------------------------PA--------------- 191 (609)
T ss_pred ---------------------------------------------------------------ec---------------
Confidence 00
Q ss_pred cccccceEEEEEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 769 SIAASKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.......++.|.|.... |++.+..+-+-+||....+... +.... ...++. . ...-..+.
T Consensus 192 -N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~------------~~~~~----~~~L~~--~-~~~~M~~~ 251 (609)
T KOG4227|consen 192 -NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV------------YQRSM----FKGLPQ--E-NTEWMGSL 251 (609)
T ss_pred -CCCccceeeeecCCCceeEEeccccCCCCceeeccccchH------------Hhhhc----cccCcc--c-chhhhhee
Confidence 01123456777776554 4555666888889875432211 00000 000110 0 22345688
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-------CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC------
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-------PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV------ 913 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~------ 913 (1134)
|+|+|..+.+.- ...-.+||+-+..+..--..|. ..+.+++|.. ..-+++|+++=.|++|.+..
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccC
Confidence 999999988876 4456778887755432222233 2467888975 35599999999999998752
Q ss_pred -----------------ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 914 -----------------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 914 -----------------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.+.+.+|+||.+-+..+.|+|...+|++.|-.+.++||.--
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 12345789999999999999999999999999999999643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-15 Score=168.42 Aligned_cols=302 Identities=17% Similarity=0.297 Sum_probs=208.2
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC---CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
+-..+.|+|-.. .+++++..-.|++||.+.++.+..|..+ ...|+.+.+....|..++++|+.||.||+|+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888877 6888887789999999999998877654 35789999888888899999999999999953211
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCe
Q 001160 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ 611 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 611 (1134)
. | ....|+++.. .-++. ..+..+.. .-+.|.....+|+++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw~------------~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAWS------------SLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEeec------------ccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 0 0 1223444321 11111 11111111 23567777778888888899
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
|+|||+........+..... ..|+++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999999888887765533 3455554433 5799999999999999997644110
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcc
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
..|..|. .
T Consensus 1245 ------------------------------------------------------s~v~~~R------------------~ 1252 (1387)
T KOG1517|consen 1245 ------------------------------------------------------SLVCVYR------------------E 1252 (1387)
T ss_pred ------------------------------------------------------ccceeec------------------c
Confidence 0111111 1
Q ss_pred cccc--eEEEEEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC--CCceEE
Q 001160 771 AASK--VVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT--EESAAC 845 (1134)
Q Consensus 771 ~~~~--v~~~~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~--~~~i~~ 845 (1134)
|... |..+.+.+.|-. |++++.+|.|++||+..... . .. +....|. .+..++
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e------------------~~----~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-E------------------TF----LTIVAHWEYGSALTA 1309 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-c------------------cc----ceeeeccccCcccee
Confidence 3333 778888886655 99999999999999865210 0 00 0000010 335899
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCCeEEEEecC-------CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS-------PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
+..+++...+|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus 1310 l~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence 9999999999999999999999974 33333332 235689999999 7888999999999999987654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=166.73 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=185.9
Q ss_pred CCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc--cceee-EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGE--LRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 407 h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~--~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
-...|.|+.|+| +..++|.|..+|.|.+||+..+.. ..... ....|..+++.+.|..+-...-+++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 677888889999999999998765 22111 22368899999999776543358999999999999
Q ss_pred ECCCCee------eEEec------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc---CCC-----ceeEecCCCC
Q 001160 483 DVVAGRK------QYTFE------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD---YLG-----SRVDYDAPGN 542 (1134)
Q Consensus 483 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~-----~~~~~~~~~~ 542 (1134)
+++.-.. ..... .-...+++++|.+... ..++.|+.+|.|.--+-. ... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8764322 11111 1234688899987765 689999999998873322 222 1225566788
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1134)
.|+++.++|-+..++..+ +|-+++||... ...++..+..+.+ .+.+++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~----gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSV----GDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeee----ccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 999999999887766554 27789999988 6677777777766 699999999875 4566778999999999754
Q ss_pred e--eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 621 N--MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 621 ~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. ++.+.... ....+.+.|++.|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 4 33333333 345678888999999999999999999999643
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-16 Score=159.65 Aligned_cols=199 Identities=22% Similarity=0.242 Sum_probs=154.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceee
Q 001160 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||++.++..+...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999998888888888899999999999999999999999 8999999998543221
Q ss_pred ecCCCCCCCCcCceEEEECCCC---cE-EEEE--ECCeEEEEeC---CCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQ---TH-LLVV--HESQISVYDS---KLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg---~~-l~~~--~d~~v~vwd~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
.+.+. ......+.|+.|+ .+ +++. ..+.|+.||+ .+.....+...-.-...|++++.|+||+++|.|
T Consensus 224 -t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 224 -TPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred -CCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11111 1346778898888 33 3332 3467777777 221111111111114689999999999999999
Q ss_pred ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+.||.|.|++..+-+.+.-... .|...++.+.|+| |.+++++.+.|.+..|-.+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998776654431 3556888999999 789999999999999988865
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=163.90 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=150.3
Q ss_pred EeccC-CCEEEEEeCCeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---eEEEEec
Q 001160 847 ALSKN-DSYVMSASGGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---EVKTKLK 921 (1134)
Q Consensus 847 ~~s~d-g~~la~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~---~~~~~l~ 921 (1134)
.|-.. |.++++|+-..|+|||...-.+.+.+.. ....|+++.-+-..|+++|+|..||.|++||.+.. ..+...+
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 34343 3444444457799999988777777654 34457887766547899999999999999998754 3567788
Q ss_pred Ccccc--eEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEE
Q 001160 922 GHQNR--ITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998 (1134)
Q Consensus 922 ~h~~~--i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~ 998 (1134)
.|.+. |..+.+-+.|- .|++|+.||.|++||+.........-+.... .. ....+++..+++...+|+|+.+.|+
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~y--Gs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EY--GSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-cc--CccceeeeeccCCCeeeecCcceEE
Confidence 99988 99999988765 4999999999999999874322211111111 00 0247899999999999998779999
Q ss_pred EEeCCCcceeccCCCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001160 999 VYDSKLECSRSWSPKDA----LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 999 vwd~~~~~~~~~~~~~~----h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
||++.++.+..+....+ ..+.+.|++|+|---+||+|+.|.+|.||...++.
T Consensus 1329 Iy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1329 IYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99997777766544322 24578999999999999999999999999887654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=173.78 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=221.5
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
+.++.+.+|.. .|.|+.|...|.++++|++|..++||..+++.++....+|.+ .|+.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCceEE
Confidence 44566778877 899999999999999999999999999999999999988755 799999999999999999999999
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
+|.+.++ ..+..+.+|++.+....+. |-
T Consensus 258 vWrl~~~-~pvsvLrghtgavtaiafs-------------------------P~-------------------------- 285 (1113)
T KOG0644|consen 258 VWRLPDG-APVSVLRGHTGAVTAIAFS-------------------------PR-------------------------- 285 (1113)
T ss_pred EEecCCC-chHHHHhccccceeeeccC-------------------------cc--------------------------
Confidence 9999999 8999999998776543222 21
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
..++.||++++||..-.......+...+ ....-+.++.|..++..+.+++.|+.-..|.+..
T Consensus 286 -~sss~dgt~~~wd~r~~~~~y~prp~~~---~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~-------------- 347 (1113)
T KOG0644|consen 286 -ASSSDDGTCRIWDARLEPRIYVPRPLKF---TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ-------------- 347 (1113)
T ss_pred -ccCCCCCceEeccccccccccCCCCCCc---ccccceeeeeccccccccccccCCcccccchhhH--------------
Confidence 1345679999999872111111111111 1235567788888899899999998877775431
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCc
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN 895 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 895 (1134)
..| + ...+.-+.++.|-. +.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+.+
T Consensus 348 -l~~----------------~-~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 348 -LAW----------------R-SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred -hhh----------------h-ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 011 1 22223333333333 444444 778999999999999999999999999999998888
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001160 896 IIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
+..+++.||...|||+..|..++.. .+| +.+..-+||+||+.++....-|.+.|.....++.
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 8889999999999999998777664 454 5567789999999999888889999987766553
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-15 Score=142.67 Aligned_cols=261 Identities=13% Similarity=0.241 Sum_probs=186.2
Q ss_pred ccccceEEE--EecCCCCeeEEEEecCCC----eEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 333 DDLTKTVVR--TLNQGSNVMSMDFHPQQQ----TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 333 ~~~~~~~~~--~l~h~~~V~~v~~spdg~----~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
+...++.+. ++.|.-+++.+-|.|+.+ .+||++ +..+++|.+...+.... +...+....-..
T Consensus 81 d~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns~ 148 (364)
T KOG0290|consen 81 DEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNSE 148 (364)
T ss_pred ccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCcccc
Confidence 344444433 356999999999999873 467765 45899999874321110 000111111345
Q ss_pred CCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 AAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+..++++..|+. |-++|.+++-|.+..|||++++..-.....+-+|...|..++|...+.+ ++|+.|.||+|+++|++
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLR 227 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEec
Confidence 778999999998 7889999999999999999997543334467799999999999998777 89999999999999998
Q ss_pred CCe---eeEEecCCCCCeEEEEeeccCCccEEEEEecC-CeEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEE
Q 001160 486 AGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSC 559 (1134)
Q Consensus 486 ~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~ 559 (1134)
.-+ .+++-.....+...++|+.... .++++-..| ..|.+.|++.... ...+..|.+.|+.++|.|.. ..++++
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 644 3333333356778888886644 677776655 5689999987654 55889999999999999965 567777
Q ss_pred eeCCCCCCcEEEEeCCCCe------eEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEE
Q 001160 560 GTSKEGESHLVEWNESEGA------IKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKF 614 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 614 (1134)
|. |.++.+||+...- ++..+. .++.|+.+.|++.. ..++.+. ++.+.+
T Consensus 307 GD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 307 GD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 64 8889999997532 233344 22379999999644 5565554 344444
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-14 Score=143.98 Aligned_cols=240 Identities=14% Similarity=0.208 Sum_probs=182.0
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iwd~~~~~~~ 917 (1134)
...+..+.|..|...|..|+....++|+.+..............|..+-||. .++|..+.+. .+++++...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4567778899999999999966678888877555333333444577778876 4777766554 5999999888877
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-E--EC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V--HE 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~--~d 994 (1134)
..+. ...+|.++.+.. ++|+.+=.+. |+|||+++-+.+.......++ ..++.++.+++.+.+||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-----~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-----PKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCC-----ccceEeeccCCCCceEEecCCCCC
Confidence 7766 556799999854 4566665554 999999997754432221111 134666677777789999 3 46
Q ss_pred CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001160 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 995 ~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
|.|.+||+ +.+....+ ..|.+++.+++|++||.+|||+|..|+ ||||.+.+|+.+.+++...+ ....
T Consensus 153 GdV~l~d~~nl~~v~~I---~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~I 221 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI---NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSI 221 (391)
T ss_pred ceEEEEEcccceeeeEE---EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEE
Confidence 89999999 66665555 467999999999999999999999998 89999999999999986532 2445
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
.+++|+| |+.+|++.|..++|+++.+++..
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 5899999 78999999999999999997644
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=156.82 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=157.3
Q ss_pred EEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC
Q 001160 844 ACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~ 922 (1134)
.+++|++||..+++|+ ||++|||+..+...+.....|...|.++.||| ||++|++-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999998888888889999999999999 99999999999 999999999977766653
Q ss_pred c--ccceEEEEEecCC-----CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-EC
Q 001160 923 H--QNRITGLAFSPTL-----NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HE 994 (1134)
Q Consensus 923 h--~~~i~~l~~s~d~-----~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d 994 (1134)
. ......+.|+.|+ ...+....-+.|+.|++...+.-......... .....+++++.|+||+++|.+ .+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~---~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI---KRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh---hccCcceeEEEcCCCcEEEEeccC
Confidence 2 2346678898887 33444455567888887765532111111111 111368999999999999994 79
Q ss_pred CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 995 SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 995 ~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|.|.|++. +.+++... .+.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999 55554433 467899999999999999999999999999988764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-14 Score=162.12 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=183.6
Q ss_pred cccCCcCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc
Q 001160 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg-~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~ 478 (1134)
+..|...|..++.+++. .++++|+.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 56788889999988755 99999999999999998642 22333334444567899999999999 7888999999
Q ss_pred EEEEECCCC--e-----eeEEecC-CCCCeEEE-EeeccCCccEEEEEecCCeEEEEEccCCCceeE--ecCCCCcEEEE
Q 001160 479 IKVWDVVAG--R-----KQYTFEG-HEAPVYSV-CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMM 547 (1134)
Q Consensus 479 i~iwd~~~~--~-----~~~~~~~-h~~~v~~i-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~ 547 (1134)
|++.++... + +.+.... ..+.+.++ ++........++.+..-+.|..||++....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998762 1 1111122 22344444 333322223788888999999999988766554 44567799999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC---CEEEEEe--CCCeEEEEECCCCee
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAG--DEFQIKFWDMDNMNM 622 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 622 (1134)
+.+|-+.+++.|+. .|.+.+||++-+.++..+......+++.+..+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999975 78899999999999988776555577777766643 3555544 578899999999877
Q ss_pred EEEEeCCCCC-----------------CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 623 LTTVDADGGL-----------------PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 623 ~~~~~~~~~~-----------------~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
...+-..... .......+...+..+.+|+.|..||.||....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6666433110 01122333334568899999999999998766
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-13 Score=147.63 Aligned_cols=331 Identities=14% Similarity=0.141 Sum_probs=206.5
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
+++++-..++.|.+.|..+.+.+.++......-..+.+++ ||.++++++.||.|.++|+.+.+....+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 4567778899999999999999999986544434456655 558999999999999999999987777765 4456889
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------CcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCC
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------KRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNM 620 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1134)
++|+||++++++.. ..+.+.++|.++.++++.+.... ...+..+..+|....++..- +.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 99999999998764 46789999999999998876542 22567787888888666554 5588888898776
Q ss_pred eeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCC
Q 001160 621 NMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1134)
Q Consensus 621 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
+.+..-..... .......|+|++++++++ ..++.|-++|..+++ ....+..
T Consensus 161 ~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~-------------------------- 212 (369)
T PF02239_consen 161 KNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDT-------------------------- 212 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE---------------------------
T ss_pred cccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccce-EEEEeec--------------------------
Confidence 54432221111 245789999999987665 446788899987662 1111100
Q ss_pred cccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEE
Q 001160 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 779 (1134)
.. ..|..++..+
T Consensus 213 -----------------------------------------------------g~--------------~p~~~~~~~~- 224 (369)
T PF02239_consen 213 -----------------------------------------------------GK--------------KPHPGPGANF- 224 (369)
T ss_dssp -----------------------------------------------------SS--------------SBEETTEEEE-
T ss_pred -----------------------------------------------------cc--------------cccccccccc-
Confidence 00 0011111111
Q ss_pred EecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE-EEE
Q 001160 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV-MSA 858 (1134)
Q Consensus 780 ~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l-a~~ 858 (1134)
..|. .+.++.. +..+... ...
T Consensus 225 php~--------------------------------------------------------~g~vw~~--~~~~~~~~~~i 246 (369)
T PF02239_consen 225 PHPG--------------------------------------------------------FGPVWAT--SGLGYFAIPLI 246 (369)
T ss_dssp EETT--------------------------------------------------------TEEEEEE--EBSSSSEEEEE
T ss_pred cCCC--------------------------------------------------------cceEEee--ccccceecccc
Confidence 1111 1111111 1122222 222
Q ss_pred eCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE----eCCCcEEEEEcCCceEEEEecCcc-cceEEEEEe
Q 001160 859 SGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG----MEDSSVQIYNVRVDEVKTKLKGHQ-NRITGLAFS 933 (1134)
Q Consensus 859 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg----~~dg~i~iwd~~~~~~~~~l~~h~-~~i~~l~~s 933 (1134)
+.+.+.+||..+++.++++....+. ..+.-+| +++++.+. ...+.|.++|..+.+.+..+.... ..+..+.|+
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred cCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 3445668899999999999876666 8888899 88888877 455899999999998888775332 358999999
Q ss_pred cCCCEEEEEcC--CCcEEEEeCCCccccc
Q 001160 934 PTLNALVSSGA--DAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 934 ~d~~~l~s~~~--D~~i~iWd~~~~~~~~ 960 (1134)
+||+.+..+.. ++.|.++|..+.+..+
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 99996655443 3379999999988544
|
... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-11 Score=127.02 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred cceEEEEEecCCcceEEeeccC-eeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
..|.-..+..++.-++.+..|| .+-||+.. +++.... .. . -+.|.++..++|
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~-e~---~-lg~I~av~vs~d 412 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRI-EK---D-LGNIEAVKVSPD 412 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEe-eC---C-ccceEEEEEcCC
Confidence 3455555666666788888887 77777653 3322211 12 2 678999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC----cEEEEEcCCceEEEEecCcccc
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----SVQIYNVRVDEVKTKLKGHQNR 926 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----~i~iwd~~~~~~~~~l~~h~~~ 926 (1134)
|++++++. ...|.+.|+++++....-+...+-|+.++||| +++++|.+--+| .|+++|+.+++....-. ..+.
T Consensus 413 GK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 413 GKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred CcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 99999998 68999999999988777666778899999999 999999987665 79999999988665433 2333
Q ss_pred eEEEEEecCCCEEEEEc
Q 001160 927 ITGLAFSPTLNALVSSG 943 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~ 943 (1134)
=.+-+|.||+++|.--+
T Consensus 491 DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccCcccCCCCcEEEEEe
Confidence 45678999999887654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=163.24 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=163.0
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccc
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELR 444 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 444 (1134)
+..|.+||....... .+..|...+.+.+|||||+.||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998755421 145678889999999999999988653 479999998875321
Q ss_pred eeeEEecccCCeeEEEEecCCCcEEEEEE-cCCCcEEE--EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cC
Q 001160 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKV--WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-ID 520 (1134)
Q Consensus 445 ~~~~~~~h~~~v~~l~~s~d~~~~~l~sg-~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d 520 (1134)
...+.+| ...++|+|||+ .|+.+ +.++.+.| ||+.++. ...+..+...+....|+|++ ..|+.++ .+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 2223333 44689999999 55554 46776555 5666655 45566677778889998764 6665544 67
Q ss_pred CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
+...+|+++..........+.. .+..|+|||++++..+. ..+.+||+.+++........ ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8889998765433222222322 46789999999988753 23777999988765333222 23457899999
Q ss_pred CEEEEEeCCCeEEEEEC--CCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 601 NRFLAAGDEFQIKFWDM--DNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++++.++.++.+.+|.+ .++.....+..+.+ .+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 99999998888888875 35777777765533 5778899874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=155.54 Aligned_cols=324 Identities=17% Similarity=0.257 Sum_probs=223.6
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~w 526 (1134)
.|..|.+.|..|.|+..|. .+++|+.|..|.+||+..++....+. ||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 6789999999999999999 89999999999999999998877664 69889998899998877899999999998864
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-CEEEE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLA 605 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 605 (1134)
.+.. ++.. .+ ...+..|.+ .|.-++.-|+. ..|.+
T Consensus 215 ~i~~---------------------------t~~~----e~------------t~rl~~h~g-~vhklav~p~sp~~f~S 250 (559)
T KOG1334|consen 215 EILE---------------------------TGYV----EN------------TKRLAPHEG-PVHKLAVEPDSPKPFLS 250 (559)
T ss_pred eecc---------------------------ccce----ec------------ceecccccC-ccceeeecCCCCCcccc
Confidence 3221 1110 00 112222333 67777777766 45788
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCC-C---CCcceEEEccCC-CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGG-L---PASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~---~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
+++|+.+.-+|++...+...+..... . ...+.++..|.. ..+++++.|..+++||...-.+. ...+ ..-.+
T Consensus 251 ~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~--~~~~f 326 (559)
T KOG1334|consen 251 CGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG--VLDKF 326 (559)
T ss_pred cccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc--hhhhc
Confidence 99999999999987765544432211 1 245788888854 48999999999999997543110 0000 00000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
+|.+
T Consensus 327 ~p~h---------------------------------------------------------------------------- 330 (559)
T KOG1334|consen 327 CPHH---------------------------------------------------------------------------- 330 (559)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
+.. ...-.|++++|+.++.-|++...|-.|+++.-.... |.......++ ........+++.. .
T Consensus 331 -----l~~-d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~----G~~p~~~s~~------~~~~k~vYKGHrN-~ 393 (559)
T KOG1334|consen 331 -----LVE-DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD----GSEPDPSSPR------EQYVKRVYKGHRN-S 393 (559)
T ss_pred -----ccc-cCcccceeEEecCCccceeeeecccceEEecccccc----CCCCCCCcch------hhccchhhccccc-c
Confidence 000 133568999999999889999999889988433211 1100000000 0111111455333 4
Q ss_pred CceEEEEe-ccCCCEEEEEeC-CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 841 ESAACIAL-SKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 841 ~~i~~~~~-s~dg~~la~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
..|..+-| -|...|+++|+| |.|.||+-.+++.+..+.+-..-|+|+.-+| --.+||+.+-|..|+||.-.+.+
T Consensus 394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 45677654 678899999995 9999999999999999988777899999999 67899999999999999865443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=143.52 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=196.3
Q ss_pred cEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcc
Q 001160 512 QFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS 590 (1134)
Q Consensus 512 ~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 590 (1134)
+++ ++-..++.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++.... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--N 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--C
Confidence 344 55667899999999998888888766555566889999999998864 6789999999999999988755 4
Q ss_pred eEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCC-----CCCcceEEEccCCCEEEEE-eCCCcEEEEECCC
Q 001160 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~ 663 (1134)
...+++++||++++++. .++.+.++|.++.+++..+..... ...+.++..+|....++.. -+.+.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998865 789999999999999988864321 1244566666666644433 3335555544332
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
...
T Consensus 160 ~~~----------------------------------------------------------------------------- 162 (369)
T PF02239_consen 160 PKN----------------------------------------------------------------------------- 162 (369)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 200
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
+.. +.
T Consensus 163 -------------------------------------------~~~-------~~------------------------- 167 (369)
T PF02239_consen 163 -------------------------------------------LKV-------TT------------------------- 167 (369)
T ss_dssp -------------------------------------------EEE-------EE-------------------------
T ss_pred -------------------------------------------cce-------ee-------------------------
Confidence 000 00
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecC----CCCceEEEEEcCC-----
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQ----- 892 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~----- 892 (1134)
+. . ........|+|++++++++. .+.|.++|.++++.+..+.. |..+...+ .+|.
T Consensus 168 ---------i~---~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw 233 (369)
T PF02239_consen 168 ---------IK---V-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVW 233 (369)
T ss_dssp ---------EE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEE
T ss_pred ---------ec---c-cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEE
Confidence 00 0 23345677888888877765 57888888888877766532 22233222 1221
Q ss_pred ----CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEE----cCCCcEEEEeCCCcccccceee
Q 001160 893 ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSS----GADAQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 893 ----~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~----~~D~~i~iWd~~~~~~~~~~~~ 964 (1134)
.+...++.-....+.+||..+.+.++.+....++ .-+..+||++++... ....+|.++|.++.+.... +
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~--i 310 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKT--I 310 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---H
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEE--E
Confidence 2222222222336668999999999999877776 778889999999987 4558899999999753221 1
Q ss_pred ecCCCCCCCCcCceEEEECCCCcEEEEE---ECCeEEEEeC-CCcceecc
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV---HESQISVYDS-KLECSRSW 1010 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg~~l~~~---~d~~v~vwd~-~~~~~~~~ 1010 (1134)
....+ ..+.++.|++||+++.++ .++.|.+||. +.+.+..+
T Consensus 311 ~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 311 TPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp HHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred eccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 11111 237899999999987774 3448999999 66665554
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-14 Score=148.32 Aligned_cols=289 Identities=11% Similarity=0.131 Sum_probs=215.9
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
++++.|.+...-+.+..||||++++|+|.+.-.|++||+.+-.....+. -....|.-.-+|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 4566777888999999999999999999999999999998765442210 023456666677
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
-|-..++.-..|.+|.+...-+- .. .+. -...-.+++++.-.-. |+.++....|+-++++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~G~-hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYGR-HY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhcCe-ee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 78777777778888876553321 11 110 1122345555544442 4444455679999999999999998888
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC------CCC-----cEEEEEECCCCCEEEEEeeCCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA------PGN-----WCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
+.++++.+++.. .+|++|+.+|.|..||.+.......+.. +.+ .|+++.|+.+|-.+++|+. .
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~ 249 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----T 249 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----C
Confidence 999999998776 7999999999999999987665544322 222 5999999999999999875 7
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|.+.|||+++.+++..-.....-+|..+.|.+.+ +.+++. +...++|||-.+|+....+... ..++.+++-|++
T Consensus 250 G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~s 325 (703)
T KOG2321|consen 250 GSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGS 325 (703)
T ss_pred CcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---CCcCceeeecCC
Confidence 8899999999888766554444478889997763 445544 5678999999999999888754 358899999999
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 001160 645 SLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+++++-.++.+..|=+..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEEecCCCcceeEEccc
Confidence 9999999988887776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-13 Score=134.48 Aligned_cols=285 Identities=15% Similarity=0.182 Sum_probs=189.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~la 424 (1134)
+-.+..++|++.-- -+|++..|-.|++||-.. .+... +-......|+|++|-|. ++.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceee
Confidence 34688899999543 467888999999999665 22110 01224567999999995 55777
Q ss_pred EEeCCCeEEEEEcCCCCccc-----------eeeEEecccCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEE
Q 001160 425 VAFSKHIVHLYTYNPTGELR-----------QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-----------~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~ 492 (1134)
+|+..| |.+|..+...... +...-.+| .+|++++|.+||. .+++++. |..|.|||+.+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777766 9999875422111 11122345 5899999999999 6777764 67899999999987765
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
....-+.+.-+.|+|++ ++|+++..|+..++|.....-.........+.|...+|+|+|++|+.... +. -.+|
T Consensus 234 ~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gs--p~ly 306 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GS--PRLY 306 (445)
T ss_pred cccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CC--ceEE
Confidence 54456778899998865 89999999999999965433333333334459999999999999886553 22 2333
Q ss_pred eCCC----Ce-----------eEEEe------cC--ccCcceEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCe
Q 001160 573 NESE----GA-----------IKRTY------SG--FRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMN 621 (1134)
Q Consensus 573 d~~~----~~-----------~~~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~ 621 (1134)
.+.- +. ++..+ .+ .-.+...+++|.|.|.++++.-.. ..|.+||....-
T Consensus 307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 3211 00 01111 11 012367889999999999985432 346778877654
Q ss_pred eEEEEe--CCCCCCCcceEEEcc---CCCEEEEEeCCCcEEEEECC
Q 001160 622 MLTTVD--ADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 622 ~~~~~~--~~~~~~~v~~~~~s~---d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.... ...+ ..-..+.|+| +|.+|.++-+.|.+.-|++.
T Consensus 387 ~vels~cg~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 387 PVELSYCGMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ceEEEecccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 444331 1111 1245677776 67788888888888887763
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-14 Score=137.52 Aligned_cols=237 Identities=13% Similarity=0.149 Sum_probs=181.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
..+|+|.+|++|+. .+|++.....|.||.......- ...+.++.|...|+++.|+|..+.|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46999999999998 6788888899999998766521 122347789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee----EEecCCCCCeE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ----YTFEGHEAPVY 501 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 501 (1134)
|+.|..-++|....+...++...+..|...++++.|+|.+. .+|+|+.-+.|.||-.+...-- +.-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999977777777777888999999999999999 8999999999999987654322 12234678899
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEc-----cCC-------------CceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLY-----DYL-------------GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
++.|+|.+ -+|++|+.|+..|++.. +.. +....+....+.+..+.|+|+|..|+-.+.
T Consensus 151 sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 99999976 89999999999999953 211 111133356779999999999999998874
Q ss_pred CCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCC
Q 001160 564 EGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 609 (1134)
|..+.+-|..... .+........ +..++.|-.+. .+++++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecCC-ceeecCCC
Confidence 7778888876554 3333333333 66667666543 45555554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=128.16 Aligned_cols=241 Identities=13% Similarity=0.159 Sum_probs=170.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-----CCcEEEEEC
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKVWDV 484 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i~iwd~ 484 (1134)
...+++|+.|...+++|..+| .+||+.+.-+... ..+-+.+.+.-+...--.+.+.|+-|+. -..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345599999999999998888 8999987633211 1111222222222211223223333332 247999996
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCceeEecCCC--CcEEEEEECCCCCEEEEEee
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGSRVDYDAPG--NWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~ 561 (1134)
...+++.++. ...+|.++.+.++ .+++. ..+.|.+|... +.+....+.... ....+++-+.+...|+.-|
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg- 155 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG- 155 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence 6777887775 6788999998653 44443 47899999887 444444443322 2333444333444455444
Q ss_pred CCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 562 SKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
-.-|+|.+-|+...+. ...+..|.. .|.|++.+-+|..++++|..|+ |||||..+|+++..+........|+++
T Consensus 156 --~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 156 --FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred --CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 3568899999986655 467777777 9999999999999999998887 799999999999999766666789999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|||+..+||++++.|++.||.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=140.28 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=151.6
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc-----CeEEEEEcCCCC
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-----SVNRCVWGPDGL 421 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~i~~spdg~ 421 (1134)
+.|....+.-..+ .++.++.++.+.|||...+..+.. ..+.. ...-+.++++.-
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 3455566666666 466777789999999987655432 01111 223344677888
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCe
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPV 500 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v 500 (1134)
++++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|+|+++++|++.+++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998433222 4779999999999999999 99999999999999999988776 667899999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+.+++++. .+++++.|.+.++|+.+..+.. .+..| ...+..++..++...+++++. |+.+++|++..
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 99999874 8999999999999976543333 45554 447899999998888888874 88899999764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=156.36 Aligned_cols=270 Identities=14% Similarity=0.196 Sum_probs=185.1
Q ss_pred ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEE
Q 001160 335 LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNR 413 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 413 (1134)
..|..+..+. |...|..++.++....++++|+.||+|++||...-..-. ..++ ....+...++.+.+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEK 1103 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEE
Confidence 4566777777 999999999988874589999999999999987532211 0111 00012235778999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC--Cccc--eeeEEeccc-C-CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPT--GELR--QHLEIDAHV-G-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~--~~~~--~~~~~~~h~-~-~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+...+.|+.+|+++.||.|++.+++-. .... +......+. + -|..-+|....+...++.+..-+.|..||+.+.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762 1111 111112222 2 234445554444336888888999999999877
Q ss_pred eeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-CCcEEEEEECC---CCCEEEEEee
Q 001160 488 RKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-GNWCTMMAYSA---DGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~---~~~~l~~~~~ 561 (1134)
....+++ ...+.|++++.+|.. .++++|+..|.+.+||++-......+... ..++..+..+| .....++++.
T Consensus 1184 ~~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1184 HDAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hhHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 6555443 346889999998766 79999999999999999987776655432 34566555544 4456666654
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCc------------------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKR------------------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 620 (1134)
.+.+.|.+|++.+|....++-...+. ......+...+..+++|+.|..|+.||....
T Consensus 1262 --~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 --SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred --cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 24667999999998766655433110 1122334444568899999999999998643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-10 Score=119.57 Aligned_cols=529 Identities=14% Similarity=0.138 Sum_probs=281.7
Q ss_pred ccCccccceEEEEecCCCCeeEEEEecCCCeEEEE------EeCCCcEEEEEccCccccccccceeeccccccccccccc
Q 001160 330 YSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLV------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 330 ~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llas------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
|..+...++..+...|-+-|+-..|+|||+.++++ +...+.+.+.+.+.|+..+- ++
T Consensus 62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi-Ty---------------- 124 (668)
T COG4946 62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI-TY---------------- 124 (668)
T ss_pred HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE-EE----------------
Confidence 44445567777777788899999999999976552 12334677777787775431 10
Q ss_pred cccCCcCeEE-EEEcCCCCEEEEEeCCCe----EEEEEcCCCCc-cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 404 LNDAAISVNR-CVWGPDGLMLGVAFSKHI----VHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 404 l~~h~~~V~~-i~~spdg~~las~~~dg~----i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
+ ...-+. ..|+|||+.|++...-.- -.+|.+..... .. .+ .-++.+.+.+ .||. ++.|-.--
T Consensus 125 f---Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~L--nlGpathiv~-~dg~---ivigRnty 192 (668)
T COG4946 125 F---GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PL--NLGPATHIVI-KDGI---IVIGRNTY 192 (668)
T ss_pred e---ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---ec--cCCceeeEEE-eCCE---EEEccCcc
Confidence 1 123333 459999999988754332 23343332211 11 11 2334555554 3342 33332111
Q ss_pred ------------cEEEEECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcE
Q 001160 478 ------------MIKVWDVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC 544 (1134)
Q Consensus 478 ------------~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 544 (1134)
.=++|--.. |+....+-...+.|.+-.+... ...+....||.=.+|..+-...-..-...-..-
T Consensus 193 dLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~---RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY 269 (668)
T COG4946 193 DLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGE---RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY 269 (668)
T ss_pred cCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcc---eEEEEecccCccceEEeccCCchhhhcCCchhc
Confidence 123454332 2222223223333333222111 222333345444444433222211111111123
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC---c---cCc-ceE---EEE-EeC-CCCEEEEEeCCCeE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---F---RKR-SLG---VVQ-FDT-TRNRFLAAGDEFQI 612 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~-~v~---~~~-~~~-~~~~l~~~~~dg~i 612 (1134)
.+-..+.||+.++... .|.|++||..+.+..+.--+ . ... .+. -+. |++ +|.+++..|. |..
T Consensus 270 Y~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gka 343 (668)
T COG4946 270 YPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKA 343 (668)
T ss_pred cccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcE
Confidence 3444578999988653 45599999987654322111 1 000 010 011 222 5677777764 567
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-cEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN-GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
.+.+...+-.++.-. ...|.-..+.-+++-++.|..|| .+-|+|..++. .. .+.
T Consensus 344 Fi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~k-r~e------------------- 398 (668)
T COG4946 344 FIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VK-RIE------------------- 398 (668)
T ss_pred EEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCce-EE-Eee-------------------
Confidence 776665554444321 22466677777788889999998 89999988772 11 000
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc
Q 001160 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
..
T Consensus 399 ------------------------------------------------------------------------------~~ 400 (668)
T COG4946 399 ------------------------------------------------------------------------------KD 400 (668)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 02
Q ss_pred ccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
-+.|.++..+++|+.++++.....+.+.|+ .+|......-.. .+-|+.++|+|+
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vidi----------------------dngnv~~idkS~----~~lItdf~~~~n 454 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDI----------------------DNGNVRLIDKSE----YGLITDFDWHPN 454 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEe----------------------cCCCeeEecccc----cceeEEEEEcCC
Confidence 356789999999998888877777766655 344433322222 678999999999
Q ss_pred CCEEEEEe-CC----eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE--ecCcc
Q 001160 852 DSYVMSAS-GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK--LKGHQ 924 (1134)
Q Consensus 852 g~~la~~s-dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~--l~~h~ 924 (1134)
++++|.+- +| .|+++|+.+++....-. ....-.+-+|.| ++++|..-+.- -.|..+.+.+.. +..|+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vs 528 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVS 528 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeec
Confidence 99999986 44 59999999887755433 444456678999 88888765421 111111111111 11122
Q ss_pred cceEEEE----EecCCCEEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE--------
Q 001160 925 NRITGLA----FSPTLNALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-------- 991 (1134)
Q Consensus 925 ~~i~~l~----~s~d~~~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-------- 991 (1134)
.+-..+- .||-.+..-. -+.++.+-+=+++... . .+....+ .-..++=-.+|+.+..
T Consensus 529 kPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~---e-P~pVee~------dY~sI~~lk~~killfs~pi~Gef 598 (668)
T COG4946 529 KPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV---E-PFPVEEG------DYRSIAGLKNGKILLFSYPIHGEF 598 (668)
T ss_pred cceEEEecCCCCChhhcCchhcCccccceehhhhcccc---c-ccccCcc------ceeEeeecCCCeEEEEEeeccchh
Confidence 2211110 1221111111 1223333322222211 0 0111110 1112222222222211
Q ss_pred -----E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 992 -----V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 992 -----~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
+ .-|.+.+||++.+....+ ...++++..|+|++.++. -.||.+++++++.
T Consensus 599 s~yy~gq~~kG~l~~ydletkk~~e~------k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 599 SQYYWGQPEKGRLEKYDLETKKVEEY------KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hhhhcCCCccceEEEEecchhhHHHH------hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1 236788999977766555 467999999999999888 7899999999986
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-12 Score=138.77 Aligned_cols=566 Identities=12% Similarity=0.111 Sum_probs=340.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.....|++|+.... ++|+|+.||.++|-.+.+...-.. .--++..+...-.+.+.||.+.|..+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCC-eEEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 45788999999887 789999999999998876543211 0011122222333458999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCCCCeEEEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSVC 504 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~ 504 (1134)
...+|.|.+|-+-.|.-..... -....+.|.++.|+.||. .|+....||.|.+=.+...+.- +.+++. ....+.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ 163 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVL 163 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--ecccee
Confidence 9999999999998876554221 123456799999999999 6888888998877664432211 123321 123566
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCC-------cee----EecCCCCcEEEEEEC--------CCCCEEEEEeeCCCC
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLG-------SRV----DYDAPGNWCTMMAYS--------ADGTRLFSCGTSKEG 565 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~----~~~~~~~~v~~~~~s--------~~~~~l~~~~~~~~~ 565 (1134)
|+++. ..++.+-..|.++++|.+..- +.. .+......+..+.|. ||...++.|..
T Consensus 164 ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---- 237 (1189)
T KOG2041|consen 164 WSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---- 237 (1189)
T ss_pred ecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----
Confidence 76654 667777788999999875321 111 112222345555552 57778888874
Q ss_pred CCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 566 ESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 566 ~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+|.+.+..-.+ ..++..-.+ - .+....|+++|..++.+|.+ +.|.+|.. -|+.+.+++.++. .|
T Consensus 238 nGr~QiMR~eND~~Pvv~dtg-m--~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I 311 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDTG-M--KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI 311 (1189)
T ss_pred CceehhhhhcCCCCCeEEecc-c--EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence 55566654433 333322222 1 57778999999999998743 25566643 4677788877654 68
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCC
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
++++|-..|-.++.+ .|+.|.+=+++.... ...+.. .+
T Consensus 312 t~lsWEg~gLriA~A-vdsfiyfanIRP~yk-Wgy~e~---Tv------------------------------------- 349 (1189)
T KOG2041|consen 312 TGLSWEGTGLRIAIA-VDSFIYFANIRPEYK-WGYIEE---TV------------------------------------- 349 (1189)
T ss_pred eeeEEcCCceEEEEE-ecceEEEEeecccce-EEEeee---EE-------------------------------------
Confidence 999998888777765 466887766654311 000000 00
Q ss_pred CCCCcccCccCCCCcccccccccccccc---cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec
Q 001160 716 GPPAVSISSLGTIDGSRLVDVKPRVAED---VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 792 (1134)
-++-... .-.|.+||..+....-+. -....++++..+--.|+.-..
T Consensus 350 ---------------------Vy~y~~~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d 398 (1189)
T KOG2041|consen 350 ---------------------VYVYQKEELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQD 398 (1189)
T ss_pred ---------------------EEEEccCCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccc
Confidence 0000000 135778887764332211 122345666666555565555
Q ss_pred cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCe
Q 001160 793 NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFK 872 (1134)
Q Consensus 793 dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~ 872 (1134)
+|.+.-++.-.+. + ....+.+-+ .-|+.+... -..|.-.-..-++.+++.++...+.+|.....+
T Consensus 399 ~~~i~e~s~le~~----~---~~~~l~LCN-SIGT~lD~k-------ytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK 463 (1189)
T KOG2041|consen 399 DGVIPEYSTLENR----S---RVYFLQLCN-SIGTSLDYK-------YTDIRPKFVCVNGICVVIASEERYFIWHYVLPK 463 (1189)
T ss_pred cCCCcchhhhhcc----c---ceEEEeeec-ccCCcCCCC-------cceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence 6666544211000 0 000000111 001111100 112222222337788889998889999876655
Q ss_pred EEEEecC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 873 VMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 873 ~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
....+.+ +...- |+-| ..-+|+.|+++. .. .+++.|..++|.+++.| .++|..+-..|.|.
T Consensus 464 ~~s~l~~~k~rkegr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~ 527 (1189)
T KOG2041|consen 464 FNSVLAGVKIRKEGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIY 527 (1189)
T ss_pred hhhhhhhhhhccccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceE
Confidence 4333332 21111 3321 223455665542 11 35678889999999986 57888888899999
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC----CCcceeccCCCCCCCCCeEEEE
Q 001160 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS----KLECSRSWSPKDALPAPISSAI 1024 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~~h~~~v~~v~ 1024 (1134)
-+.+.+...... .... ..+..++..-+..++|+ -.-|.+.+.|+ ++.++..+.... ...|+.+.
T Consensus 528 rySl~nv~l~n~------y~~n---~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~ 596 (1189)
T KOG2041|consen 528 RYSLNNVVLTNS------YPVN---PSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYE 596 (1189)
T ss_pred EEEecceeeeec------cccC---chheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhh
Confidence 999887542211 1111 35678888888888887 45677777776 455555333322 67899999
Q ss_pred EccCCCEEEEEecCCcEEEEeCCC
Q 001160 1025 YSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1025 ~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|..|...|++--....+.|++-.+
T Consensus 597 Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 597 WAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hccCCchHHhhhhhceEEEecCcC
Confidence 998877666554555678887554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-14 Score=159.40 Aligned_cols=234 Identities=13% Similarity=0.116 Sum_probs=151.7
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
.++.+|...........+...+.+++|||||++++.++..+ ..|.+||+.+++..... .+.
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~ 247 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFR 247 (429)
T ss_pred EEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCC
Confidence 44444543333333344788899999999999655443322 37999999887532110 022
Q ss_pred cCCcCeEEEEEcCCCCEEEEEe-CCCeEEEE--EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAF-SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~-~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+| ..+++|||||+.|+.++ .+|.+.|| |+.++.. . .+..+...+....|+|||+. +++++..++...||
T Consensus 248 g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVY 319 (429)
T ss_pred Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEE
Confidence 23 44689999999998875 57766555 5555432 2 45567777889999999994 33345567888888
Q ss_pred ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
++.. +.....+ ++.. ....|+|+ |+.|+.++.++ +.+||+.++........ .....+.|+|||++++.++.
T Consensus 320 ~~~~~~~~~~~l-~~~~--~~~~~SpD--G~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 320 RMSASGGGASLV-GGRG--YSAQISAD--GKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred EEECCCCCeEEe-cCCC--CCccCCCC--CCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc
Confidence 7653 2222333 3443 45667665 47888877765 55599987765433222 23456789999999998875
Q ss_pred CCCCCCcEEEEeC--CCCeeEEEecCccCcceEEEEEeCC
Q 001160 562 SKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 562 ~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
++...+|.+ .+|+.++.+..+.. .+...+|+|-
T Consensus 392 ----~g~~~~l~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 392 ----QGLGKVLQLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred ----CCCceEEEEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 344555553 35778888877665 6778888874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-11 Score=140.76 Aligned_cols=278 Identities=13% Similarity=0.111 Sum_probs=189.9
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC--cCeEEEEEcCCCCEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--ISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~i~~spdg~~la 424 (1134)
+++++.++-. +++|| ++.-.|.+||+..+..+.. ......+..|. +.+.+ .+-+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~-------------~~~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH-------------LIQSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh-------------hhhhccccccccccccee-----ccceEE
Confidence 3555555555 44554 3356899999998876642 11111233440 00110 233444
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe--EE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV--YS 502 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~ 502 (1134)
++..-+.+..=+..-. .+..-...|....+.-+.+ .++.+..++.+.+||...+.....+....... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5444333332222211 1111233444455666666 67888888999999988887766665332211 11
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE-
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR- 581 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~- 581 (1134)
+-+-...+.-++++|+.-+.|.+|+....+....+.+|.+.+.++.++.||+++++++. |..+++|++.+++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 11212223368999999999999999865566678999999999999999999999985 7789999999988776
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.-+|.. .+..++|.|+ .++++++|.+.++|+.. ++.+..+..|.. ..+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 5566776 7888889987 99999999999999764 455557777755 37899999999999999999999999997
Q ss_pred CCc
Q 001160 662 SDG 664 (1134)
Q Consensus 662 ~~~ 664 (1134)
.+.
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=134.39 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=180.4
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC-C
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-V 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~ 485 (1134)
-..+|+|.||++|++.+|++..+..|.||...+.+......++..|...|+.++|+|... .|++|+.|..-++|.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999998887777778999999999999999998 7999999999999998 3
Q ss_pred CCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee----EecCCCCcEEEEEECCCCCEEEEE
Q 001160 486 AGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 486 ~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.++ +.-.+..+....+++.|+|.+ +.|++|+.-+.|.+|-++....-. .-......|.++.|+|++-+++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 443 344566789999999999987 799999999999999887544321 334456689999999999999998
Q ss_pred eeCCCCCCcEEEEeC-----CC-------------CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 560 GTSKEGESHLVEWNE-----SE-------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+. |+..+++.. +. |+++..+. ...+.+..+.|+|+|+.|+-.+.|..+.+=|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 666777743 11 22333343 233479999999999999999999999999987765
Q ss_pred -eEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 622 -MLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 622 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.+...... .-+..++.|-.+...++.|
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVAAG 267 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceeecC
Confidence 23332221 1355667776655444433
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-09 Score=126.02 Aligned_cols=535 Identities=10% Similarity=0.083 Sum_probs=298.4
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLY----TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
...+.|.++.+-++...++.+..+|.|.+. +..+.. +. ....-..+|.+++||||++ .|+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 356789999999999999999999999999 444422 22 2233567899999999999 6666666777776
Q ss_pred EECCCCeee------------------------EEecCCCC------------------Ce----EEEEeeccCCccEEE
Q 001160 482 WDVVAGRKQ------------------------YTFEGHEA------------------PV----YSVCPHHKESIQFIF 515 (1134)
Q Consensus 482 wd~~~~~~~------------------------~~~~~h~~------------------~v----~~i~~~~~~~~~~l~ 515 (1134)
.+ .+-..+ ..|+|-.+ .+ ..+.++..+||.+++
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 54 211111 11211100 01 223344477889999
Q ss_pred EEec---C---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc---
Q 001160 516 STAI---D---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF--- 586 (1134)
Q Consensus 516 s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--- 586 (1134)
+.+. . +.+|+|+-+ +.....-....+--.+++|-|.|+++++... ..+...|.+|. ++|-.-..|...
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCC
Confidence 8875 2 579999865 3322222333334468899999999998765 23345566666 445444444432
Q ss_pred cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEECCC
Q 001160 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+..|..+.|++|+..|+..-.|. |++|...+... .+.+..... ..+..+.|+| +...|...+.+|.+..++..-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~ 380 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW 380 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence 334789999999999999977655 99999988663 333443322 2345699999 455677777778887766532
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccc-cccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLV-DVKPRVAE 742 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 742 (1134)
... .+.. ..+ |...+++-
T Consensus 381 ~v~-----~s~~--------------------------------------------------------~~~~D~g~vaVI 399 (928)
T PF04762_consen 381 DVS-----RSPG--------------------------------------------------------SSPNDNGTVAVI 399 (928)
T ss_pred EEE-----ecCC--------------------------------------------------------CCccCceEEEEE
Confidence 100 0000 001 11122222
Q ss_pred ccCccceeccCCCCC--ccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 743 DVDKIKSWRIPDISD--PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
+..++++-.+..... +.....+.+ ...|..++|++++..+++...||.+.+|.+..............
T Consensus 400 DG~~lllTpf~~a~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~----- 469 (928)
T PF04762_consen 400 DGNKLLLTPFRRAVVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL----- 469 (928)
T ss_pred eCCeEEEecccccCCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh-----
Confidence 224455444443222 222233332 46799999999998899999999999998755332210000000
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-C---CeEEEEECCCCe---EEEEecCCCCceEEEEEcCCC
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFK---VMTMFMSPPPAATFLAFHPQD 893 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~ 893 (1134)
............... . ...+..++|..+..+++... + ..+.++++...+ .......-.+.+..+...+ .
T Consensus 470 ~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 545 (928)
T PF04762_consen 470 SSISLDSMDISDSEL--P-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-D 545 (928)
T ss_pred hhccccccccccccc--c-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-C
Confidence 000000000000000 1 45678899988888777766 3 468888874332 2233333344555566665 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCceE-EEEecCcccceEEEEEecCCC---EEEEEcCCCcEEEEeCCCcccccceeeecCCC
Q 001160 894 NNIIAIGMEDSSVQIYNVRVDEV-KTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1134)
Q Consensus 894 ~~~lasg~~dg~i~iwd~~~~~~-~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1134)
...++.-..||.+...+...... +..|..-...+ .+....+.. .++.-+..+.+++ ++.. +.
T Consensus 546 ~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~-----la---- 611 (928)
T PF04762_consen 546 SGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA----NSRL-----LA---- 611 (928)
T ss_pred CcEEEEEECCCEEEEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE----CCEE-----Ee----
Confidence 44466677899998776654422 22333222222 222222322 4444444454442 1111 11
Q ss_pred CCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCC--cceeccCCCC--CCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 970 RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL--ECSRSWSPKD--ALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 970 ~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~--~~~~~~~~~~--~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
..+++.++ .+.+|+. .....+++.++.. ..+....... .+...+.. -..|..|+++-....=.|.
T Consensus 612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVL 681 (928)
T PF04762_consen 612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVL 681 (928)
T ss_pred -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEE
Confidence 23455555 3445544 6677788888851 1111110000 00112222 2567788877666555666
Q ss_pred eCCCcce
Q 001160 1045 DAETLRF 1051 (1134)
Q Consensus 1045 d~~~~~~ 1051 (1134)
-+.-|.+
T Consensus 682 QmPRGNL 688 (928)
T PF04762_consen 682 QMPRGNL 688 (928)
T ss_pred EcCCCch
Confidence 6665543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-13 Score=129.91 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=167.9
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCc--eEEEEEcCCCCcEEEE-EeCC------CcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAI-GMED------SSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~las-g~~d------g~i~iwd 910 (1134)
+....+++|..|...+++|.+...+||+.+..+.......+.+. +.-+-| ..++||. |+.+ ..|.|||
T Consensus 5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEe
Confidence 34456699999999999999988999999875543333222222 333333 2345443 4333 4799999
Q ss_pred cCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 911 VRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 911 ~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
=...+++.++. ...+|.++.+++| .|+.+- .+.|.||.... .+.+. .+...... .+..+++-+..-.+|
T Consensus 82 D~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~--~~et~~NP----kGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 82 DLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLH--VIETRSNP----KGLCSLCPTSNKSLL 151 (346)
T ss_pred cccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhhee--eeecccCC----CceEeecCCCCceEE
Confidence 66677888876 6788999999876 455443 66799999984 33222 22222111 123333333344455
Q ss_pred EE-E-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEeCCCcceeeecCCccccccccc
Q 001160 990 LV-V-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-IGVFDAETLRFRCRIGPSAYIPTYAV 1066 (1134)
Q Consensus 990 ~~-~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~ 1066 (1134)
|. | .-|+|.|-|+.......-....+|.+.|.+++.+-+|.+|||+|..|+ |||||..+|+++.+++...
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------- 224 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------- 224 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-------
Confidence 55 4 458999999933333111223567999999999999999999999998 8999999999999987442
Q ss_pred CCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1067 SNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1067 ~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
......+++|+| ++.+|+++|.-|+|+++.+....
T Consensus 225 -d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 -DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 124455999999 88999999999999999987655
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-12 Score=128.51 Aligned_cols=284 Identities=13% Similarity=0.138 Sum_probs=188.8
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+++++--..++++..|-.|++|+-.... -..+.. . . ...|+|++|-|.+
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~--------------------pt~Lks--~---s-QrnvtclawRPls 152 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC--------------------PTKLKS--V---S-QRNVTCLAWRPLS 152 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC--------------------Cceecc--h---h-hcceeEEEeccCC
Confidence 456778888876678889999999999743200 001111 1 2 6789999999954
Q ss_pred -CEEEEEeCCeEEEEECCCCe----E----------EEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCCceE
Q 001160 853 -SYVMSASGGKVSLFNMMTFK----V----------MTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEV 916 (1134)
Q Consensus 853 -~~la~~sdg~i~vwd~~~~~----~----------~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~~~~ 916 (1134)
+-+++|..+.|.||..+..- . +..-.+| .+|++++|.+ ||..+++++ .|..|.|||.+++..
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc
Confidence 57777779999999876321 1 1112234 5799999999 788888877 467899999999877
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
+.-..--.+.++-+.||||+.+|..+.-|+..++|+... ....+. .+. . ..|...+|+|+|++|..+..+
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~lg--s------grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-ILG--S------GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-ecc--C------CceeeeeecCCCCEEEEEEcC
Confidence 655544556788999999999999999999999995443 222111 111 1 358899999999999887666
Q ss_pred eEEEEeC--CCcceecc--------------------CCCCCCCCCeEEEEEccCCCEEEEEecCCc--------EEEEe
Q 001160 996 QISVYDS--KLECSRSW--------------------SPKDALPAPISSAIYSCDGLLVYAGFCDGA--------IGVFD 1045 (1134)
Q Consensus 996 ~v~vwd~--~~~~~~~~--------------------~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~--------I~vwd 1045 (1134)
.-++|.+ .++..... ....--.+++.+++|.|.|.+||+.-..+. |..||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 6666665 11111110 011112578999999999999998654433 66777
Q ss_pred CCCcceeeecCCcccccccccCCCCccEEEeecC--CCCCEEEEEeCCCcEEEEecC
Q 001160 1046 AETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP--SEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
....-.+.-.-.. . ....+|-.++|+| .++.+|..+=..|.+.-|++.
T Consensus 382 tr~sp~vels~cg------~-i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 382 TRKSPPVELSYCG------M-IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccccCceEEEecc------c-ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7654333222111 0 1113344566655 466777777777888877764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=141.80 Aligned_cols=117 Identities=26% Similarity=0.441 Sum_probs=105.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
.+.|...+|||||++||+.+ ||.++|||..+.+++..++..-+...|++||| ||++|++|++|-.|.||.+...+++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 56788999999999999999 99999999999998888887788999999999 99999999999999999999999999
Q ss_pred EecCcccceEEEEEec-------------------------------C----C-------------CEEEEEcCCCcEEE
Q 001160 919 KLKGHQNRITGLAFSP-------------------------------T----L-------------NALVSSGADAQLCM 950 (1134)
Q Consensus 919 ~l~~h~~~i~~l~~s~-------------------------------d----~-------------~~l~s~~~D~~i~i 950 (1134)
.=.+|.+.|..|+|.| + + -.+.++|.|..+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 25778899999999
Q ss_pred EeCCCcc
Q 001160 951 WSIDKWE 957 (1134)
Q Consensus 951 Wd~~~~~ 957 (1134)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-12 Score=145.23 Aligned_cols=236 Identities=10% Similarity=0.106 Sum_probs=157.1
Q ss_pred cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCcccee
Q 001160 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---SKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~---~dg~i~iwd~~~~~~~~~~ 446 (1134)
.|.+||........ +..+...+.+.+|||||+.||..+ .+..|.+|++.+++..
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--- 236 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 236 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---
Confidence 68888887554321 334667899999999999999764 3457999999887532
Q ss_pred eEEecccCCeeEEEEecCCCcEEEE-EEcCCC--cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-Ce
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-GK 522 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~~ 522 (1134)
.+....+.+..++|+|||+. |+ +.+.++ .|++||+.+++... +..+...+....|+|++ +.|+..+.+ +.
T Consensus 237 -~l~~~~~~~~~~~~SPDG~~--La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~ 310 (429)
T PRK03629 237 -QVASFPRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDS--QNLAYTSDQAGR 310 (429)
T ss_pred -EccCCCCCcCCeEECCCCCE--EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCC--CEEEEEeCCCCC
Confidence 22223334567899999995 44 334444 59999998887544 44445567788888754 777666654 44
Q ss_pred EEEE--EccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 523 IKAW--LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
..+| |+.++.. ..+...........|+|||++++..+.. ++...|.+||+.+++.. .+.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE-EeCCCC--CCCCceECCCC
Confidence 4555 5554433 3333344456678999999999876642 23457999999888644 333221 23457899999
Q ss_pred CEEEEEeCCCe---EEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 601 NRFLAAGDEFQ---IKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 601 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+.++.++.++. ++++++. +.....+..+. ..+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 99999886654 6777874 44455555443 3567788886
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=146.23 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=214.4
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.-..+.|+.+|+++ +.|+..|.|-.+|+.++...... .-...|.++.|-.+.+++|++
T Consensus 131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei--------------------~v~Etv~Dv~~LHneq~~AVA- 188 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEI--------------------NVMETVRDVTFLHNEQFFAVA- 188 (545)
T ss_pred CCeeeeecCCccEE-EecCCccceeeeecccceeeeee--------------------ehhhhhhhhhhhcchHHHHhh-
Confidence 56789999999965 56788999999999998866431 134568999999999999998
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
....+.|||-.+ ..+. .+..| .+|..+.|.|.-- +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus 189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 555699999765 3344 33333 4689999999876 899999999999999999999999988889999998888
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
.+ ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+++++.|. |..+.|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecCC
Confidence 76 78889999999999999999999999999999999999999999999986 7789999999888777776622
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEEC-CCC--eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM-DNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+...+++|..| +++.|....|.||.= -.+ ..-..+-.|.....|..+.|.|-...|-+|...|.-.+.
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 56778888665 445555668999942 221 112222223333478999999987788877776655554
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-14 Score=156.99 Aligned_cols=349 Identities=17% Similarity=0.184 Sum_probs=220.9
Q ss_pred CCCCCCc-hhHHHHHHHHHHHHHHhhCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001160 161 LSFPSFK-SSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGP 239 (1134)
Q Consensus 161 ~~~~~~p-~~rL~~ll~q~~~~Q~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 239 (1134)
.+.|-.| +--|..|+-|+++.|+.+|..+.+..+++|||..|+|++++.....|.++...+ -.. ..+
T Consensus 1004 q~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl----~~r--------el~ 1071 (1516)
T KOG1832|consen 1004 QMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRL----GTR--------ELQ 1071 (1516)
T ss_pred cCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcc----cch--------hhc
Confidence 3344344 335999999999999999999999999999999999999654444444443322 000 000
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCccCCCCCCCCCCcccccccCCCCCCCCCcccccCCChhhhhhhcccCCcceeE
Q 001160 240 FQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVS 319 (1134)
Q Consensus 240 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 319 (1134)
++ |- .+.-...|...+..+.+
T Consensus 1072 -~~------------------------------y~--------------------gV~g~~~dr~~IFSRFr-------- 1092 (1516)
T KOG1832|consen 1072 -SF------------------------------YS--------------------GVHGNRRDRQFIFSRFR-------- 1092 (1516)
T ss_pred -Cc------------------------------cc--------------------ccccCcccchhhHhhcc--------
Confidence 00 00 00000012222222222
Q ss_pred eeCCCCCCccccCccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccc
Q 001160 320 FAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMP 398 (1134)
Q Consensus 320 ~s~~g~~~~~~~~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 398 (1134)
..+++. |....+|++||-+.+ .|+.|+..|.|+++++.+|.....
T Consensus 1093 -------------------~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------- 1138 (1516)
T KOG1832|consen 1093 -------------------SWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------- 1138 (1516)
T ss_pred -------------------cchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc--------------
Confidence 233344 667899999999998 678899999999999999987654
Q ss_pred ccccccccCCcCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 399 LQNALLNDAAISVNRCVWGPDGLMLGVAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 399 ~~~~~l~~h~~~V~~i~~spdg~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
..+|...|+-+.-|.||..+.+.+.- ....+|++.+. ......+. .-.++.|+..... -+.|..-
T Consensus 1139 -----~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~ 1205 (1516)
T KOG1832|consen 1139 -----VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEA 1205 (1516)
T ss_pred -----ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccc
Confidence 56799999999999999988776543 35789998762 22222322 3467889876553 3334444
Q ss_pred CcEEEEECCCCeeeEEe-cC---CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001160 477 KMIKVWDVVAGRKQYTF-EG---HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
..+.+||++++..+.++ .+ .+..-++..|+|.. .+++ .|| .+||++..+.+..+.... .-..-.|+|.
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~ 1277 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPS 1277 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCC
Confidence 57899999999877663 22 22233666787764 3443 244 469999877666554332 1123369999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--CC---------------CeEEEE
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--DE---------------FQIKFW 615 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iw 615 (1134)
|..++..+ .|||+++.+.++....-.+ ..+.|+..|+.++..- .| ...+-+
T Consensus 1278 g~eVIINS---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf 1345 (1516)
T KOG1832|consen 1278 GNEVIINS---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTF 1345 (1516)
T ss_pred CceEEeec---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccc
Confidence 99999875 4799999988887765543 4577888888766532 01 123344
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+......+.++... ..+..++-++...++++-
T Consensus 1346 ~a~dYs~iaTi~v~---R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1346 DAIDYSDIATIPVD---RCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cccccccceeeecc---cchhhhhcCCccceEEEE
Confidence 44444555555433 234555555555555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=126.64 Aligned_cols=520 Identities=11% Similarity=0.129 Sum_probs=310.5
Q ss_pred EEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 340 VRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 340 ~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
-+++. |.+.|.-+.|+.+.+. |.++..+|.|.||-+-.|..... .+-...++.|.+++|+.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNL 125 (1189)
T ss_pred hhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcC
Confidence 45566 9999999999999884 78888999999999988865432 11233567799999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-------eeeE
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-------RKQY 491 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-------~~~~ 491 (1134)
||+.++....||.|.+=.+++...... .+++. -...+.|++|.+ .++.+-.+|.+.++|.+.. .+..
T Consensus 126 dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~V 199 (1189)
T KOG2041|consen 126 DGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEV 199 (1189)
T ss_pred CCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEE
Confidence 999999999999999999887654332 23322 245789999999 5677778899999995432 1111
Q ss_pred E----ecCCCCCeEEEEeecc------CCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 492 T----FEGHEAPVYSVCPHHK------ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 492 ~----~~~h~~~v~~i~~~~~------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
. +......|..+.|... ++...|+.+...|.+.+-.-.+......+... -.+..+.|+++|..|+.||.
T Consensus 200 n~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 200 NGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred eeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccC
Confidence 1 1112223555555321 24478999999999998876666655555433 67889999999999999987
Q ss_pred CCCC----C-CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 562 SKEG----E-SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 562 ~~~~----~-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
+.+. + +.|.+|. .-|+.+.+++.... .|++++|-..|-.++.+ .|+.|++=+++..-....+..
T Consensus 279 ~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~-------- 347 (1189)
T KOG2041|consen 279 DSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEE-------- 347 (1189)
T ss_pred cccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeee--------
Confidence 5432 2 2455554 45788888887766 89999998877666655 578888877764333222221
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCC
Q 001160 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
.+.|-..+.- ...-.|.+||..+.++.++.......- .++
T Consensus 348 TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~-a~~----------------------------------- 387 (1189)
T KOG2041|consen 348 TVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENM-AFY----------------------------------- 387 (1189)
T ss_pred EEEEEEccCC----CcceEEEEEecccChhhhhhhcceeeh-hee-----------------------------------
Confidence 1111111100 112357899998886666554432211 100
Q ss_pred CCCcccCccCCCCcccccccccccccc-cCccceeccCCCCCccceeEeec---CCcc---cccceEEEEEecCCcceEE
Q 001160 717 PPAVSISSLGTIDGSRLVDVKPRVAED-VDKIKSWRIPDISDPSQIKALRL---PDSI---AASKVVRLIYTNSGLSLLA 789 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~---~~~~---~~~~v~~~~~s~~g~~l~~ 789 (1134)
.+--.++... ++.+.-+. +....+....+.+ .+.. .-..|.-.-..-++..++.
T Consensus 388 -----------------~ehCvL~~~~d~~~i~e~s--~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vvi 448 (1189)
T KOG2041|consen 388 -----------------REHCVLINRQDDGVIPEYS--TLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVI 448 (1189)
T ss_pred -----------------cccEEEEeccccCCCcchh--hhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEE
Confidence 0000111111 12222110 0000000000000 0000 1112222233345555555
Q ss_pred eeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEC
Q 001160 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1134)
Q Consensus 790 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~ 868 (1134)
++.+ .+.+|.....+...... +...+ . .+. ..+...|. |+ |+++. .
T Consensus 449 AS~e-~~~iWhy~~pK~~s~l~--------------~~k~r--k------egr-~h~Ddtp~------ga~d~~l~---y 495 (1189)
T KOG2041|consen 449 ASEE-RYFIWHYVLPKFNSVLA--------------GVKIR--K------EGR-FHGDDTPE------GAQDRTLE---Y 495 (1189)
T ss_pred eccc-cEEEEEEeccchhhhhh--------------hhhhc--c------ccc-ccCCCCcc------chhhceee---c
Confidence 5554 57788765433211100 00000 0 000 11111122 22 33221 1
Q ss_pred CCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcE
Q 001160 869 MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948 (1134)
Q Consensus 869 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i 948 (1134)
. ..++.|...+|.+++.|. ++|.++-..|.|+-|.+.+.-...... -...|.+++..-+...+|.-.--|.+
T Consensus 496 s----~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~ 567 (1189)
T KOG2041|consen 496 S----TKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVV 567 (1189)
T ss_pred c----ceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhcee
Confidence 1 356777888999999975 688899999999999998876665544 44568899998888889888888888
Q ss_pred EEEeCC---CcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC
Q 001160 949 CMWSID---KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS 1002 (1134)
Q Consensus 949 ~iWd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~ 1002 (1134)
.+.|+. ++..+.. +..... ..|..+.|..|+..|.+- ....+.+++-
T Consensus 568 tf~dLd~d~~g~ql~~--~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 568 TFQDLDYDFDGDQLKL--IYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred eeeecccccCcceeee--eehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 888886 2332221 111111 357888888888766663 3445666665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=129.68 Aligned_cols=272 Identities=11% Similarity=0.133 Sum_probs=193.1
Q ss_pred CCCeeEEEEecCCCe-EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 346 GSNVMSMDFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~-llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
...|..++|--|++. ++...+.|..+............. .|+.. .......+|..++.. ...|+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEEE
Confidence 357888888877763 333333566666666665554332 12221 123345556666553 33677
Q ss_pred EEeCCCeEEEEEcCCCCccc-eeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecC------
Q 001160 425 VAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEG------ 495 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~------ 495 (1134)
+|-.+|.+.+|..+.+..-. ....+.. ..++..|.-++.... .+++|+.. ..+.|||+++.+.+.+-+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 78899999999998543111 1112322 346777777777665 67779998 8999999998876654332
Q ss_pred -C--CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 496 -H--EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 496 -h--~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
- .-+++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|++++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 1245667787775568999999999999999997665 4477778889999999999999999864 777999
Q ss_pred EeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 572 WNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 572 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
+|.+.++.... +.+..+ .++++..+|.+++++++|-|+.+||+|+.+.+++...-... ..+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 99999998877 666665 89999999999999999999999999999976665543322 345555544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=145.97 Aligned_cols=238 Identities=9% Similarity=0.034 Sum_probs=155.2
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeecccccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..+|.+|....+......+...+.+.+|||||+.++++.. .+..|.+|++.+++... +
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 3455555444444444457778999999999996655432 23579999998875432 1
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-CC--c
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-DK--M 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-d~--~ 478 (1134)
....+.+...+|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++ .
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 1223335578999999998875 3344 5889999887543 3334455678899999999 5554443 34 4
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|+++|+.+++. ..+..+........|+|++ .+++..+.+ ..|.+||+.++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 55557766654 3443344445667787754 777666543 358889988765443 322 223456789999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
++..+.++ +...+.++++ +|.....+.++.. .+...+|+|
T Consensus 388 i~~~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 99887633 2445788887 4666666776554 677788876
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=143.26 Aligned_cols=238 Identities=11% Similarity=0.166 Sum_probs=164.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~ 422 (1134)
|.+-|+|++|+.||. +|++|+.|-.+.|||.-..+.++. +-.||...|.|+.|-| +.+.
T Consensus 49 H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred ccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCCeE
Confidence 899999999999998 899999999999999987666653 3468999999999999 5678
Q ss_pred EEEEeCCCeEEEEEcCCCC-------ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-e----
Q 001160 423 LGVAFSKHIVHLYTYNPTG-------ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-Q---- 490 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~-------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~---- 490 (1134)
+++|..|..|+++|+...+ .......+..|...|..++-.|++.. .+-++++||+|+-+|++.... -
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~ 188 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDED 188 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcccc
Confidence 9999999999999998521 12233355679999999999999965 889999999999999986321 1
Q ss_pred -----EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-----ecCCCCcEEEEE-ECCCCCEEEEE
Q 001160 491 -----YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMA-YSADGTRLFSC 559 (1134)
Q Consensus 491 -----~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~l~~~ 559 (1134)
..+...--...++.++|..+ .+|+.|+.|--.++||.+....... .........|+. |+|.+- .
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----k 263 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----K 263 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----c
Confidence 11111223457788888865 7999999999999999642211110 000011111121 122111 0
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1134)
. .+ +... +.-..++-+.|+|+|..+++.-..-.|+++|+..++....+
T Consensus 264 n----~~----------gn~~-----~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 264 N----SQ----------GNLD-----RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred C----cc----------cccc-----cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 00 1000 00013566889999987777555568999999987755544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.3e-12 Score=143.18 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=152.1
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc--
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM-- 478 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~-- 478 (1134)
+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+. ++++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEECCCCCE-EEEEEecCCCce
Confidence 4567889999999999999998764 468999999887542 34456677889999999995 3445555554
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|++||+.+++. ..+..+........|+|++ ..++..+. ++ .|.+||+..+... .+......+....|+|||+.
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCE
Confidence 78889887765 4566666667778887754 77776653 33 5778887655443 33333455677899999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC------CeEEEEECCCCeeEEEEeCC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE------FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++....+ .+...|.+||+.++.. +.+... . .+....|+|||+.|+..+.+ ..++++|+..+.. ..+...
T Consensus 348 ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~-~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~ 422 (435)
T PRK05137 348 IAFTKQG-GGQFSIGVMKPDGSGE-RILTSG-F-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP 422 (435)
T ss_pred EEEEEcC-CCceEEEEEECCCCce-EeccCC-C-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCC
Confidence 9987642 2345789999865543 333321 1 45678899999998775532 3688888876554 344322
Q ss_pred CCCCCcceEEEcc
Q 001160 630 GGLPASPRLRFNK 642 (1134)
Q Consensus 630 ~~~~~v~~~~~s~ 642 (1134)
..+...+|+|
T Consensus 423 ---~~~~~p~Wsp 432 (435)
T PRK05137 423 ---GDASDPAWSP 432 (435)
T ss_pred ---CCccCcccCC
Confidence 1356667776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-13 Score=140.88 Aligned_cols=154 Identities=19% Similarity=0.295 Sum_probs=117.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc-----------ccceeeccccccccccccccccCCcCeEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-----------KPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+..|+|+.|-|.++.++.++-.+|.+.+||..-.-.... ..+..|.-..... +.....--.+.|..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN--Pv~~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN--PVARWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC--ccceeEeccccccce
Confidence 579999999999887888888899999998632110000 0111111111111 111112234589999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ +|++|++|-.|.||.+..++.+..=+
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 999999999999999999999999876654 3333456799999999999 99999999999999999999999999
Q ss_pred CCCCCeEEEEee
Q 001160 495 GHEAPVYSVCPH 506 (1134)
Q Consensus 495 ~h~~~v~~i~~~ 506 (1134)
+|..+|..++|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999998
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-12 Score=143.37 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccce
Q 001160 369 GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQ 445 (1134)
Q Consensus 369 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 445 (1134)
..|.+||........ +..+...+.+.+|+|||+.|+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 368889986543221 3457778999999999999998864 347999999887542
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCe
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGK 522 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~ 522 (1134)
.+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+|++ ..|+.++. ++.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~ 315 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGR 315 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCC
Confidence 23334445568899999995 334445454 699999988875 4455565556678887754 77776653 444
Q ss_pred --EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 523 --IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 523 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|.++|+.+++.. .+..........+|+|||++++....+ ++...|.+||+.+++.. .+... . ......|+|||
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~~-~-~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTPG-S-LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCCC-C-CCCCceECCCC
Confidence 566666554433 233333445578999999999876532 23457999999887755 33322 1 23457899999
Q ss_pred CEEEEEeC---CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 601 NRFLAAGD---EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 601 ~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
++++..+. .+.|+++++..+ ....+..+. ..+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 98887664 346888888543 444444332 2456667775
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=142.69 Aligned_cols=231 Identities=14% Similarity=0.171 Sum_probs=193.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
-.-..+.++.+|++|+.|+..|.+..+|+.++.... ++. -...|.++.|..+.+ ++|.+ ..+.++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCCc
Confidence 345688999999999999999999999999976544 332 345799999998887 55554 577899999 8899
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 89888755 568899998876 68888999999999999999999988888889999999998888888764 889
Q ss_pred EEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
|.+|.....+++..+-.|.. +|.++++.++|.++++.|.|..++|||+++...+.++... .+...+++|..|. ||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkgl-LA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKGL-LA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCccccccccccc-ee
Confidence 99999999999999999988 9999999999999999999999999999998877766542 2467788887763 44
Q ss_pred EEeCCCcEEEEE
Q 001160 649 VTTSDNGIKILA 660 (1134)
Q Consensus 649 ~~~~dg~i~iw~ 660 (1134)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 3 3444889995
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=145.67 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=151.1
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
...+|..|...........+...+.+.+|||||+.++++...+ ..|.+||+.+++...
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-------------------- 234 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-------------------- 234 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------
Confidence 3455666654444444456788999999999998655544333 369999999886432
Q ss_pred cccCCcCeEEEEEcCCCCEEEE-EeCCCeEEEEEc--CCCCccceeeEEecccCCeeEEEEecCCCcEEEE-EEcCCCcE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMI 479 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las-~~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~~i 479 (1134)
+....+.+.+.+|||||+.|+. .+.+|...||.+ .++. .+ .+..+........|+|||+. |+ ++..++..
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~ 308 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAP 308 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCc
Confidence 2223345678999999998875 566777666654 4433 22 34445556677899999994 44 34345555
Q ss_pred EEEEC--CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 480 KVWDV--VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 480 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.||.+ .+++.. .+..+........|+|+ |++++..+.++ .|.+||+.+++...... ........|+|||+
T Consensus 309 ~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpD--G~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~ 383 (427)
T PRK02889 309 QIYRMPASGGAAQ-RVTFTGSYNTSPRISPD--GKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGR 383 (427)
T ss_pred EEEEEECCCCceE-EEecCCCCcCceEECCC--CCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCC
Confidence 66654 445432 22222233445677764 47887776554 69999998776543322 23346789999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.|+..+..+ +...+++.+. ++.....+..+.. .+...+|+|
T Consensus 384 ~l~~~~~~~-g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 384 YILYATQQG-GRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred EEEEEEecC-CCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 999877533 3455777776 4555555554433 566667776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=145.45 Aligned_cols=237 Identities=12% Similarity=0.109 Sum_probs=153.5
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeeccccccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
.++.+|....+......+...+.+.+|||||+.++.+... +..|.+||+.+++... +.
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~ 244 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VA 244 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ec
Confidence 3555555444444445577889999999999965554322 2469999998876432 22
Q ss_pred cCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCCc--E
Q 001160 406 DAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKM--I 479 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~~--i 479 (1134)
...+...+.+|||||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+..+ .++. |
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQI 318 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceE
Confidence 234455688999999988654 4444 6999999887532 3445555567889999999 455444 4444 7
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
+++|+.+++... +..+.......+|+|++ ++++..+.++ .|.+||+.+++.. .+. +........|+|||+++
T Consensus 319 y~~dl~~g~~~~-lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 319 YRVAASGGSAER-LTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred EEEECCCCCeEE-eecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEE
Confidence 777877766432 32233344567887754 7777655433 6999999876654 332 22244567999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
+..+.. .+...|++++.. +.....+..+.. .+...+|+|
T Consensus 394 ~~~s~~-~g~~~L~~~~~~-g~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 394 LYATRE-GGRGVLAAVSTD-GRVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEEEec-CCceEEEEEECC-CCceEEcccCCC-CCCCCccCC
Confidence 877653 345678889885 444555544333 455666765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=130.27 Aligned_cols=316 Identities=11% Similarity=0.173 Sum_probs=212.5
Q ss_pred eeEeeCCCCCCccc------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC-----------CCcEEEEEccCc
Q 001160 317 EVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----------VGDISLWEVGSR 379 (1134)
Q Consensus 317 ~v~~s~~g~~~~~~------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~-----------dg~i~iwd~~~~ 379 (1134)
-|.|||-|.++..+ .|.+.....++.+-|. .|.-+.|||..++ |++-+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkY-LVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEKY-LVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccce-EEEecCCccccCcccCCCceEEEEEcccc
Confidence 37888888776554 4555666677777787 6999999999984 555432 147999999999
Q ss_pred cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEE
Q 001160 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1134)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 459 (1134)
...+...+ +.+....-.-+.||.|++++|--..+ .|.||+..+-..+... .+ .-..|...
T Consensus 293 ~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K-sl--ki~gIr~F 352 (698)
T KOG2314|consen 293 LLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK-SL--KISGIRDF 352 (698)
T ss_pred chhcceec----------------cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc-cc--CCccccCc
Confidence 88764221 11222223457899999999987665 5999998764433211 11 24568899
Q ss_pred EEecCCCcEEEEEEcC-----CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe----------cCCeEE
Q 001160 460 AFAHPNKQLCIVTCGD-----DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------IDGKIK 524 (1134)
Q Consensus 460 ~~s~d~~~~~l~sg~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------~d~~i~ 524 (1134)
.|+|.+. +||--.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.-- .-..+.
T Consensus 353 swsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 353 SWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 9999988 6665432 2367777777877777654443 5555666666777776532 222355
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C---eeEEEecCccCcceEEEEEeCCC
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G---AIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|+.++........-.-...|...+|-|.|+.+++.+.. +...++.+|.+++ . +++..+.. ...+.+.|+|.|
T Consensus 429 IfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG 504 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKG 504 (698)
T ss_pred EEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCC
Confidence 66666555544444445578899999999998866532 3466788888773 2 23334433 257789999999
Q ss_pred CEEEEE---eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEEEECCCc
Q 001160 601 NRFLAA---GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSDG 664 (1134)
Q Consensus 601 ~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~iw~~~~~ 664 (1134)
++++.+ |..|.+.++|........+- ...| ...+.+.|.|.|++++++++ |..-++|+....
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTA-SPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhcc-Cccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 998875 46789999999853322221 1122 24578999999999999876 566788888655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-11 Score=125.52 Aligned_cols=282 Identities=9% Similarity=0.104 Sum_probs=186.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
..+.+..++|++|+ ++|.+ .++.+.|++..++..+.+ -....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999998 66655 478999999988753322 11226899999999999987
Q ss_pred E-----eC-----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 426 A-----FS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 426 ~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
- .. .-.+.+|++.++.... .+..-...-++..|+.|.. ++.--..+.+++|++..-+.+. -+-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 11 2347799999843322 2222222227899999986 3433445689999987643322 123
Q ss_pred CCCCeEEEEeeccCCccEEEE-----EecCCeEEEEEccCCCceeEe---cCCCCcEEEEEECCCCCEEE-EEeeC--C-
Q 001160 496 HEAPVYSVCPHHKESIQFIFS-----TAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSADGTRLF-SCGTS--K- 563 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~-~~~~~--~- 563 (1134)
|...|+.+.++|.+.-..+++ .+.-..+++|.+......... ......-..+.|++-|.-|+ .++.+ +
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 677899999988754445554 355667999977622211111 11122334677888777544 33322 1
Q ss_pred ----CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 564 ----EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 564 ----~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
.++..++++++........+ ...++|.++.|+|+++.+++ |-.--.+.|||++ +.++..+.. .+-++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~ 316 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT 316 (566)
T ss_pred CccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence 24567889988844443333 33449999999999987766 4577889999986 455555432 24578
Q ss_pred EEEccCCCEEEEEeC---CCcEEEEECCCc
Q 001160 638 LRFNKEGSLLAVTTS---DNGIKILANSDG 664 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~---dg~i~iw~~~~~ 664 (1134)
+-|+|.|++++.++- .|.|.|||+.+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 999999999998876 478999999875
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-11 Score=126.62 Aligned_cols=331 Identities=14% Similarity=0.156 Sum_probs=205.2
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-----C-----CC
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-----D-----EF 610 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----dg 610 (1134)
.......+++++|++++.+. +..+.|++..++..+.+.... .+..+.|+|.|+++.+-- . .-
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeecccccccccccccccccCCCCCCC
Confidence 33567889999999999885 556999999888654444433 477899999999887621 2 23
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
.+.+|+++++.....+...... -++..|+.|..+.+- -..+.+.+|++.+-......+....
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~--------------- 167 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSG--------------- 167 (566)
T ss_pred ceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccceeeeeeccc---------------
Confidence 4779999996666666544322 268899998765443 2355899999876432222222111
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCC--ccceeEeecCC
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD--PSQIKALRLPD 768 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~--~~~~~~~~~~~ 768 (1134)
...+.++|.++.... +.+.| -.-|.-..+++|.+..... ....+.+.
T Consensus 168 ------------i~~f~lSpgp~~~~v------------AvyvP----e~kGaPa~vri~~~~~~~~~~~~a~ksFF--- 216 (566)
T KOG2315|consen 168 ------------ITMLSLSPGPEPPFV------------AVYVP----EKKGAPASVRIYKYPEEGQHQPVANKSFF--- 216 (566)
T ss_pred ------------eeeEEecCCCCCceE------------EEEcc----CCCCCCcEEEEeccccccccchhhhcccc---
Confidence 012233333211000 00000 0001225678887763211 11122211
Q ss_pred cccccceEEEEEecCCcceEEeec---cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 769 SIAASKVVRLIYTNSGLSLLALAS---NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
...=..+.|++-|.-|+.... |.+ ....-+..++.+.+.. |......+.. .++|.+
T Consensus 217 ---kadkvqm~WN~~gt~LLvLastdVDkt-------------n~SYYGEq~Lyll~t~-g~s~~V~L~k----~GPVhd 275 (566)
T KOG2315|consen 217 ---KADKVQMKWNKLGTALLVLASTDVDKT-------------NASYYGEQTLYLLATQ-GESVSVPLLK----EGPVHD 275 (566)
T ss_pred ---ccceeEEEeccCCceEEEEEEEeecCC-------------CccccccceEEEEEec-CceEEEecCC----CCCceE
Confidence 112235667776665443322 210 0001111112222223 3333334554 889999
Q ss_pred EEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCCceEEEE
Q 001160 846 IALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 846 ~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~~~~~~~ 919 (1134)
+.|+++|+-++++. -.++.|||++ +..+..+. .++-+++-|+| .|++|+.++-+ |.+.|||+.+.+++..
T Consensus 276 v~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 276 VTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 99999999888775 5789999986 56666664 67788999999 88988888755 8999999999998888
Q ss_pred ecCcccceEEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1134)
+..-.. +-..|+|||.+++|+.. |+.++||++..
T Consensus 352 ~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 352 FKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 875443 45799999999998873 67899999976
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-12 Score=124.47 Aligned_cols=344 Identities=13% Similarity=0.239 Sum_probs=217.1
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.++.++|+.+ .++....-|..+-+++.++|.++++|--. .++.-..+.. ....++.++.+.++...|++|-..|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEE
Confidence 4566778777 77777777888889999999999999543 4444444332 2234678999999999999999999988
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
-+.+..........+.
T Consensus 94 efs~sedfnkm~~~r~---------------------------------------------------------------- 109 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKD---------------------------------------------------------------- 109 (404)
T ss_pred EEEhhhhhhhcchhhh----------------------------------------------------------------
Confidence 8776533111111000
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccC
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVA 817 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 817 (1134)
| ..|...+..+.|+-.-..+++.+.|..+. |...
T Consensus 110 ------------~------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~--------------- 143 (404)
T KOG1409|consen 110 ------------Y------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT--------------- 143 (404)
T ss_pred ------------h------------------hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------
Confidence 0 12677788888888888888888886654 3221
Q ss_pred cccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEC--CCCeEEEEecCCCCceEEEEEcCCCC
Q 001160 818 PQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM--MTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 818 ~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
+.+..+.... - ....+++.+.- .+...|. .|.|..-.+ ....++.++.+|.+.+++++|.+ ..
T Consensus 144 ------e~~~~lg~Y~----~-~~~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~ 209 (404)
T KOG1409|consen 144 ------ESGNRLGGYN----F-ETPASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQ 209 (404)
T ss_pred ------ccCCcccceE----e-eccCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CC
Confidence 1111110000 0 01111111111 1333444 455444433 34677889999999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcCCce-EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC-----
Q 001160 895 NIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA----- 968 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~----- 968 (1134)
++|.+|..|..+.+||+...+ ....+.+|.+.|..+..-+--+.|.+++.||.|.+|+++.........+..-.
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhC
Confidence 999999999999999997654 34568899999999999888899999999999999999865432221111100
Q ss_pred -------------------CCC--CCCcCceEEEECCCCcEEEEEECCeEEEEeCCCccee-----ccCCCCCCCCCeEE
Q 001160 969 -------------------GRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSR-----SWSPKDALPAPISS 1022 (1134)
Q Consensus 969 -------------------~~~--~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~-----~~~~~~~h~~~v~~ 1022 (1134)
-|. .....+...+-+....+...+..-.+++-|.-...+. .+...+.-...|+.
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgIta 369 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITA 369 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeE
Confidence 000 0001122222222222222344445565554111111 11112211357999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|.+..+-.+|+|++.|..|+|||+..
T Consensus 370 mhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 370 MHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEhhhhccceeecCCceEEEEEechh
Confidence 99988888999999999999999874
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=140.78 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=145.4
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 46999999987643 23334455678999999994 3346677777666
Q ss_pred EE--CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEE
Q 001160 482 WD--VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 482 wd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
|. +..+. ...+..+.+......|+|++ ..|+..+. ++...+|.++.. .....+..........+|+|||++++
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 65 44444 45666566666777887754 77665554 566777765432 22222222333445678999999999
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeeEEEEeCCCCCCC
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF---QIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
..+.. .+...|.+||+.+++....... . ......|+|||+.|+.++.++ .+++.++ ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 76642 2234799999988875433222 1 235678999999988876443 3556666 4555555543322 4
Q ss_pred cceEEEcc
Q 001160 635 SPRLRFNK 642 (1134)
Q Consensus 635 v~~~~~s~ 642 (1134)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 56677776
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-10 Score=123.76 Aligned_cols=212 Identities=18% Similarity=0.215 Sum_probs=136.1
Q ss_pred CceEEEEeccCCCEEEEEe--CCeEEEEECCC-CeEEEE---ec----------CCCCceEEEEEcCCCCcEEEEEeC-C
Q 001160 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM---FM----------SPPPAATFLAFHPQDNNIIAIGME-D 903 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~lasg~~-d 903 (1134)
.....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++... .
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3455688999999999886 78999999976 433322 21 1234578999999 8887776543 3
Q ss_pred CcEEEEEcCCce--EE--EEec-CcccceEEEEEecCCCEEEEE-cCCCcEEEEeCC--CcccccceeeecCCCCCCCCc
Q 001160 904 SSVQIYNVRVDE--VK--TKLK-GHQNRITGLAFSPTLNALVSS-GADAQLCMWSID--KWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 904 g~i~iwd~~~~~--~~--~~l~-~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~--~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
..|++|++.... +. ..+. .....-..++|+||++++... -.+++|.++++. ++.......+...........
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 489999997654 32 2222 234457899999999987655 467889999998 443222222222211111112
Q ss_pred CceEEEECCCCcEEEEEE--CCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeC--CC
Q 001160 976 GETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDA--ET 1048 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~--~~ 1048 (1134)
....++++|||++|.++. .+.|.+|++ ....+...............++++|||++|+++.. ++.|.+|++ .+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 578999999999999964 578999998 22233322221111345789999999999988874 568999876 56
Q ss_pred cceee
Q 001160 1049 LRFRC 1053 (1134)
Q Consensus 1049 ~~~~~ 1053 (1134)
|.+..
T Consensus 326 G~l~~ 330 (345)
T PF10282_consen 326 GKLTP 330 (345)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-11 Score=119.17 Aligned_cols=190 Identities=15% Similarity=0.281 Sum_probs=124.5
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----eeEEecCCC------------CCeEEEEeeccCCccEEE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHE------------APVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~~~~l~ 515 (1134)
..-|.++.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999743322 122344454 357888999888888999
Q ss_pred EEecCCeEEEEEccCCCceeE-----ecCCCCcEEEEEE---CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 516 STAIDGKIKAWLYDYLGSRVD-----YDAPGNWCTMMAY---SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
..+.|++|++|.+........ .......++++.. .+....+. ..+.+.+...+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 999999999998876544331 1111112222211 11110110 12334444444
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-eEEEEeCCCC-----CCCcceEEEcc-CCCEEEEEeCCCcEEEEE
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN-MLTTVDADGG-----LPASPRLRFNK-EGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~ 660 (1134)
.-.|++++++.|+..++++ +|=.|.+|+++--. .......... ..-|++..|+| .-.+++..++.|+|++-|
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 4479999999999988887 56789999987432 2222221111 12378889999 456788888999999999
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
++..
T Consensus 243 mR~~ 246 (433)
T KOG1354|consen 243 MRQS 246 (433)
T ss_pred chhh
Confidence 8754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-11 Score=139.18 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=156.2
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1134)
...+|.+|...........+...+.+.+|||||+.|+.+.. .+..|.+||+.+++...
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 34566666544444444558889999999999996555443 24689999998876432
Q ss_pred cccCCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CC--C
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DD--K 477 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d--~ 477 (1134)
+..+.+.+.+.+|||||+.|+.. +.++ .|.+||+.++... .+..+........|+|||+ .|+..+ .+ .
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~ 314 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGS--QIVFESDRSGSP 314 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCC--EEEEEECCCCCC
Confidence 33456677889999999988644 4454 4777788876532 3445666677899999999 455444 33 3
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.|++||+.+++. ..+..+.+.+....|+|++ +.|+..+.+ ..|.+||+..... ..+.. ...+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence 688889776654 3444345556677887754 777766543 3688888765443 22322 23567889999999
Q ss_pred EEEEEeeCCCCC--CcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 555 RLFSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 555 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.++..+...... ..++++|+..+.. ..+.. .. .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 998766432221 4688888876544 34432 21 345566665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-07 Score=115.49 Aligned_cols=519 Identities=13% Similarity=0.166 Sum_probs=287.3
Q ss_pred cCeEEEEEcCCCCEEEEEeC--CC--eEEEEEcCCCCccceeeEEe-----cccCCeeEEEEecCCCcEEEEEEcCCCcE
Q 001160 409 ISVNRCVWGPDGLMLGVAFS--KH--IVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~--dg--~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~sg~~d~~i 479 (1134)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 35777777776654443322 22 34444433332222222332 2346799999999998 57777788999
Q ss_pred EEE----ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc------------C-C----------C
Q 001160 480 KVW----DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------Y-L----------G 532 (1134)
Q Consensus 480 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~------------~-~----------~ 532 (1134)
.+. |..+... ...-.-+..|.+++|+|+. ..|+..+.++++.+-.-+ . + +
T Consensus 100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCcee-EEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 998 5444332 1222346789999999976 788888888888775321 0 0 0
Q ss_pred ceeEecC------------------------CCCcEEEEEECCCCCEEEEEeeCCC-C-CCcEEEEeCCCCeeEEEecCc
Q 001160 533 SRVDYDA------------------------PGNWCTMMAYSADGTRLFSCGTSKE-G-ESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 533 ~~~~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
....+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |.+..+...
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~- 254 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP- 254 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-
Confidence 0000000 1224467899999999998876333 2 4789999965 665544442
Q ss_pred cCcceEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeeEEEEeCC--CCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 587 RKRSLGVVQFDTTRNRFLAAGD---EFQIKFWDMDNMNMLTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..+--.+++|-|.|+.+++... ...|.+|.-+ |-.-..+... .....|..+.|++|+..||....|. |.+|-.
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 2224456899999999998653 4567777643 3333333332 2334789999999999999987664 999987
Q ss_pred CCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccc
Q 001160 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1134)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1134)
.+- .. .++.
T Consensus 333 ~NY-HW--YLKq-------------------------------------------------------------------- 341 (928)
T PF04762_consen 333 SNY-HW--YLKQ-------------------------------------------------------------------- 341 (928)
T ss_pred eCC-EE--EEEE--------------------------------------------------------------------
Confidence 654 11 0000
Q ss_pred cccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCC-cceEEeeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
.+.++ ....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 342 ---------------------ei~~~---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------ 379 (928)
T PF04762_consen 342 ---------------------EIRFS---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------ 379 (928)
T ss_pred ---------------------EEEcc---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------
Confidence 00000 01112225555532 335555555666665542
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEeCCeEEEEECCCCeE-----EEEecCCCCceEEEEEcCCCC
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSASGGKVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~sdg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
|+...+.. .+| |...+++.++.++.+-.+..... ...+. -...|.+++|++ ++
T Consensus 380 ~~v~~s~~-------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~ 438 (928)
T PF04762_consen 380 WDVSRSPG-------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SN 438 (928)
T ss_pred EEEEecCC-------------------CCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CC
Confidence 11111100 111 33345555556677777664321 12232 356899999999 67
Q ss_pred cEEEEEeCCCcEEEEEcCCceEE--------EEec----------CcccceEEEEEecCCCEEEEEcCC---CcEEEEeC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVK--------TKLK----------GHQNRITGLAFSPTLNALVSSGAD---AQLCMWSI 953 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~--------~~l~----------~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~ 953 (1134)
..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 77888999999999985443211 1111 123457889998887776666554 56888887
Q ss_pred CCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCC--
Q 001160 954 DKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGL-- 1030 (1134)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-- 1030 (1134)
...+... ......... ..+..+...++...++. ..+|.+..++..+.......... .-+-..++...+..
T Consensus 519 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~--~c~~~~~~~~~~~~~~ 591 (928)
T PF04762_consen 519 DDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ--PCPWMEVCQINGSEDK 591 (928)
T ss_pred ccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC--CCcEEEEEEECCccce
Confidence 4433211 111111111 23444445555553444 67888887766333222111110 11222232223322
Q ss_pred -EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1031 -LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1031 -~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
.++.-+..|.+++ ++..++ ..+++.+.+. .+|+-......+++.++.
T Consensus 592 ~~~~GLs~~~~Ly~----n~~~la----------------~~~tSF~v~~---~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 592 RVLFGLSSNGRLYA----NSRLLA----------------SNCTSFAVTD---SFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred eEEEEECCCCEEEE----CCEEEe----------------cCCceEEEEc---CEEEEEecCceEEEEECc
Confidence 3333333444443 233332 2223444433 567766777889999988
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-10 Score=112.73 Aligned_cols=257 Identities=13% Similarity=0.171 Sum_probs=174.5
Q ss_pred CCceEEEEeccCCCEEEEEe----CCeEEEEECCC--CeEEE--EecCCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS----GGKVSLFNMMT--FKVMT--MFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd 910 (1134)
....+-++++|++++|.++. +|.|..|.++. |++.. .......+-+.+++++ ++++|+++.. -|.|.++-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEEE
Confidence 67788999999999998885 36788888875 44322 2222223348899999 8999988875 48999999
Q ss_pred cCC-ceEEE--EecCcccc----------eEEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 911 VRV-DEVKT--KLKGHQNR----------ITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 911 ~~~-~~~~~--~l~~h~~~----------i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+.. |.+.. ....|.+. +-...+.|++++|++.+ .| .|.+|+++.|+........... ..
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~-----G~ 191 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP-----GA 191 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCC-----CC
Confidence 865 43222 12235544 77888999999999875 45 4999999977754333333322 26
Q ss_pred CceEEEECCCCcEEEEE--ECCeEEEEeCCC--cceeccCCC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEE
Q 001160 976 GETKVQFHNDQTHLLVV--HESQISVYDSKL--ECSRSWSPK------DALPAPISSAIYSCDGLLVYAGFC-DGAIGVF 1044 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~--~d~~v~vwd~~~--~~~~~~~~~------~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vw 1044 (1134)
+.+.++|+|++++..+. -+++|.+|..+. ..+..+... ..-.....+|.+++||++|.++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 78999999999988874 479999999833 333332221 111456778899999999988753 3468888
Q ss_pred eCCCc-ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-cEEEEecCCCccccCCCCC
Q 001160 1045 DAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-AVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1045 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-~v~vW~~~~~~~~~~~~~~ 1111 (1134)
.+... ..+.... .. ..+...|....+.| +|++|++++.|+ .|.++.++...+.+.....
T Consensus 272 ~V~~~~g~L~~~~---~~----~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 272 SVDPDGGKLELVG---IT----PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEcCCCCEEEEEE---Ee----ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 77643 2222221 11 12335588899999 678888888775 7999988766655554443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-10 Score=114.88 Aligned_cols=280 Identities=11% Similarity=0.117 Sum_probs=184.3
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc---CeeEEeecccccCCCCCCcccccCccc
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN---AVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
++.|.+|++.+....... +.+ .......+-++++|+++.|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~--~~~--v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL--LQL--VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCcccccch--hhh--ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 467899988843222111 111 1255677889999999999887664 66666654
Q ss_pred ccCCCCCcccc-ccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCC-CeEEEE--ecCCCCc----------e
Q 001160 821 WQPPSGTLMTN-DINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMT-FKVMTM--FMSPPPA----------A 884 (1134)
Q Consensus 821 w~~~~~~~~~~-~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i 884 (1134)
|..+|++... .... . ..+.+.++++++|++++++. .|.|.++-++. |.+... +..|.+. +
T Consensus 72 -D~~~G~Lt~ln~~~~--~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 -DPDDGRLTFLNRQTL--P-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHV 147 (346)
T ss_pred -cCCCCeEEEeecccc--C-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCcc
Confidence 3343432211 0111 1 33348899999999999998 69999999965 433221 2224444 8
Q ss_pred EEEEEcCCCCcEEEEEeC-CCcEEEEEcCCceEEEEec---CcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCCc--c
Q 001160 885 TFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKW--E 957 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~~~l~---~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~--~ 957 (1134)
....|.| ++++|++.+- --.|.+|++..|++...-. .-...-+.|+|+|++++..... -+++|.+|..+.. +
T Consensus 148 H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 8899999 8998887653 2389999999876533211 2334568999999999887665 5899999999873 3
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--CCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEE
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
......+......-........+..++||++|.++. ...|.+|.+ .+..+........+...-..+.|+++|++|+
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 221112222222222235678899999999999974 347888888 4444444433333455578899999999999
Q ss_pred EEecCC-cEEEEeCC--Ccce
Q 001160 1034 AGFCDG-AIGVFDAE--TLRF 1051 (1134)
Q Consensus 1034 ~~~~dg-~I~vwd~~--~~~~ 1051 (1134)
++.+++ .|.+|.++ +|++
T Consensus 307 aa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 307 AANQKSDNITVFERDKETGRL 327 (346)
T ss_pred EEccCCCcEEEEEEcCCCceE
Confidence 988774 58888765 4443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=120.03 Aligned_cols=361 Identities=12% Similarity=0.150 Sum_probs=227.6
Q ss_pred EEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE
Q 001160 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1134)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|.-..+..+..+... .|..+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeecC---CceecccCccccee
Confidence 3455444444444444566888999999999999875 334999998877755555532 68889999999999
Q ss_pred EEEeCCC---------------eEEEEECCCCeeEEEEeCCCCCCCcc-eEEEccCCCEEEEEeCCCcEEEEECCCchhh
Q 001160 604 LAAGDEF---------------QIKFWDMDNMNMLTTVDADGGLPASP-RLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1134)
Q Consensus 604 ~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1134)
.+-+..+ .+.+||..++..+..+.........+ -+.|+.+.+++|-. ....+.|+++ ++ ..
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~-n~ 163 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TD-NI 163 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CC-cc
Confidence 9866443 49999999999999887654422233 67899888887765 3347888887 33 10
Q ss_pred hhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCcc
Q 001160 668 LRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKI 747 (1134)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 747 (1134)
..+... .+
T Consensus 164 ----~~~p~~--------------~l------------------------------------------------------ 171 (561)
T COG5354 164 ----EEHPFK--------------NL------------------------------------------------------ 171 (561)
T ss_pred ----ccCchh--------------hc------------------------------------------------------
Confidence 011000 00
Q ss_pred ceeccCCCCCccceeEeecCCcccccceEEEEEecCCc--ceEE-----eeccCeeEEeecccccCCCCCCcccccCccc
Q 001160 748 KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL--SLLA-----LASNAVHKLWKWQRTERNPSGKATANVAPQL 820 (1134)
Q Consensus 748 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 820 (1134)
....|....++|.|. .|+. .+..+.+++|.+..+ +.+...+ +
T Consensus 172 -----------------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~------s~l~tk~--l 220 (561)
T COG5354 172 -----------------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN------SVLVTKN--L 220 (561)
T ss_pred -----------------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC------Ceeeeee--e
Confidence 012233444444321 1111 123455566654311 1111100 0
Q ss_pred ccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe------------CCeEEEEECCCCeEEEEecCCCCceEEEE
Q 001160 821 WQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 821 w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1134)
+ ...-..+.|.+.|+++.+-- ...+.|+++....+.... .-.++|...+
T Consensus 221 ------------f------k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~ 281 (561)
T COG5354 221 ------------F------KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFT 281 (561)
T ss_pred ------------E------eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeee
Confidence 0 11123456666676655321 245888888754443333 5678999999
Q ss_pred EcCCCCcEEE-EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC---CcEEEEeCCCcccccceee
Q 001160 889 FHPQDNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---AQLCMWSIDKWEKLKSRFI 964 (1134)
Q Consensus 889 ~s~~~~~~la-sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---~~i~iWd~~~~~~~~~~~~ 964 (1134)
|.|...++.+ +|-.+..+.++|++.. +...+ ....=..+.|||.+++++.++-| |.+-+||....-. ++
T Consensus 282 W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~~ 354 (561)
T COG5354 282 WEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----VA 354 (561)
T ss_pred ecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceE----EE
Confidence 9994444433 3357889999999866 33333 33344568899999999998876 5699999887442 23
Q ss_pred ecCCCCCCCCcCceEEEECCCCcEEEEE-------ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEec
Q 001160 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV-------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC 1037 (1134)
Q Consensus 965 ~~~~~~~~~~~~v~~~~fspdg~~l~~~-------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~ 1037 (1134)
....+. ..+.+.|+|||.++.+. -|..|.+||+.+.... +.+.+.|.|.|++..+.+.
T Consensus 355 ~~~~~~-----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 355 GAFNGL-----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred EEeecC-----CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hhhhccccCCcccceeecc
Confidence 233332 35778899999998883 2678999999666543 4567788898998887776
Q ss_pred CC
Q 001160 1038 DG 1039 (1134)
Q Consensus 1038 dg 1039 (1134)
+.
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 54
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-11 Score=117.68 Aligned_cols=263 Identities=13% Similarity=0.157 Sum_probs=176.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc--ccCCcCeEEEEEcCCCC-
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL--NDAAISVNRCVWGPDGL- 421 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~i~~spdg~- 421 (1134)
..+-|.+|.|...|. +||+|..+|.|.++.-.....- .++....-.... ....-+ -.-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshe-pEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHE-PEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeeccccccc---ceeeeeeeeccC-cccchhhhhhhhhhhhhceecCCCCc
Confidence 346799999999998 7999999999999975432220 111110000000 000001 11346799999999765
Q ss_pred -EEEEEeCCCeEEEEEcCCCCccc--------------------------------eeeE-EecccCCeeEEEEecCCCc
Q 001160 422 -MLGVAFSKHIVHLYTYNPTGELR--------------------------------QHLE-IDAHVGGVNDIAFAHPNKQ 467 (1134)
Q Consensus 422 -~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~~-~~~h~~~v~~l~~s~d~~~ 467 (1134)
.+...+.|.+|++|.+....... +... -.+|.--|+++.++.|++
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667799999999986422111 0011 136788899999999998
Q ss_pred EEEEEEcCCCcEEEEECCCCee---eEEecCC-----CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC-----c-
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRK---QYTFEGH-----EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG-----S- 533 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h-----~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~- 533 (1134)
.++++ +|=.|-+|+++--.. +-.++.+ ..-|++..|+|... ..++-.+..|+|++.|++... .
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 56665 478899999874322 2223332 24578888998765 688888899999999998321 1
Q ss_pred eeEe----------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCc-----------c-
Q 001160 534 RVDY----------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKR-----------S- 590 (1134)
Q Consensus 534 ~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~-----------~- 590 (1134)
.... ..--..|..+.|+.+|+++++-. --+|.+||+. ..+++.+++.|..- .
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 1111 11123678999999999999863 3579999994 56777777766421 1
Q ss_pred --eEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 591 --LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 591 --v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
-..++|+.++.++++|+....+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2347899999999999999999999965543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.6e-11 Score=120.37 Aligned_cols=250 Identities=10% Similarity=0.137 Sum_probs=182.7
Q ss_pred CCcCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCcccee---eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 407 AAISVNRCVWGPDGL--MLGVAFSKHIVHLYTYNPTGELRQH---LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~--~las~~~dg~i~iwd~~~~~~~~~~---~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
....|+.++|.-|++ .+...+.+..+....+......... ........+|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 456788888887665 4444446667777777665443321 1222345667777664 34 5889999999999
Q ss_pred EECCCCe----eeEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEccCCCceeEecCC---------CCcEEE
Q 001160 482 WDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGSRVDYDAP---------GNWCTM 546 (1134)
Q Consensus 482 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~---------~~~v~~ 546 (1134)
|..+.+. .+..+..+ ..+..+.-++... .++++|+.. ..+.+||++..+.++.-... .-+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9987443 23334333 4455555444432 577779998 88999999987555433221 126788
Q ss_pred EEECCC--CCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 547 MAYSAD--GTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 547 ~~~s~~--~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+.|-+. ...+++++. -+++++||.+.++ ++..|..... +++++...|+++++++|..-|.+..||.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999888 888998874 7789999999754 6777776655 8999999999999999999999999999999888
Q ss_pred EE-EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhh
Q 001160 624 TT-VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 624 ~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1134)
.. +.+- .+.|.++..+|.++++++++-|..+||+|+.+.+.+.+
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 76 5544 34789999999999999999999999999999644333
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-11 Score=119.54 Aligned_cols=110 Identities=19% Similarity=0.316 Sum_probs=91.6
Q ss_pred CCceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~ 913 (1134)
.++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...+..+.||| +|++|++|+.+ |.|.+||+.+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 55799999999999887663 5789999997 66666664 56788999999 89999998754 6799999999
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcC------CCcEEEEeCCC
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGA------DAQLCMWSIDK 955 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~ 955 (1134)
.+.+.... |. .++.++|||||++++++.. |..++||++..
T Consensus 135 ~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 135 KKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 88887765 43 4789999999999999874 78899999964
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=131.05 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=151.0
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCe--EEEEEeCCC--cEEEEEccCccccccccceeecccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT--ILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~--llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
..+|..|...++..........+..-+|||||+. ++++...+| .|.+.++.+++...
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~------------------- 225 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK------------------- 225 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-------------------
Confidence 3455555544444444445667788999999975 333554444 57777888775432
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC--ccceeeEEecccCCeeEEEEecCCCcEEEEE-Ec
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT-CG 474 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~-----dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s-g~ 474 (1134)
+....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.......+|+|||+. |+. ..
T Consensus 226 -lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~--Laf~s~ 300 (428)
T PRK01029 226 -ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR--LVFVSN 300 (428)
T ss_pred -eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE--EEEEEC
Confidence 2223444567899999999987653 2234557776532 2221 22222334567899999994 443 34
Q ss_pred CCCcEEEE--ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 475 DDKMIKVW--DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 475 ~d~~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.++...+| ++.. +.....+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..... .....+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~ 377 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPS 377 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceE
Confidence 46654555 4432 33344555555667788888765 777766543 46999999877654433 2334567899
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
|+|||+.|+..... .+...|+++|+.+++........ . .+...+|+|..
T Consensus 378 wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~~ 426 (428)
T PRK01029 378 WAIDSLHLVYSAGN-SNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEEEECC-CCCceEEEEECCCCCEEEeecCC-C-cccCceecCCC
Confidence 99999998865532 34577999999887765444322 2 45567777743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.3e-10 Score=117.17 Aligned_cols=314 Identities=10% Similarity=0.057 Sum_probs=205.8
Q ss_pred CcceeEeeCCCCCCccc------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCC---------------cEE
Q 001160 314 QSDEVSFAGVAHTPNVY------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG---------------DIS 372 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg---------------~i~ 372 (1134)
++..+.+||.|..++.. .++......+..+.|. .|..+.|||.++ +|.+-+..+ .+.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~ 111 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK-YLVTWSREPIIEPEIEISPFTSKNNVF 111 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchhheeeeecC-CceecccCcccc-eeeeeccCCccChhhccCCccccCcee
Confidence 44557778888776554 2333444455556665 799999999998 677765443 489
Q ss_pred EEEccCccccccccceeeccccccccccccccccCCcC--eE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEE
Q 001160 373 LWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS--VN-RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI 449 (1134)
Q Consensus 373 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~-~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~ 449 (1134)
+||..+|..+..... ...+ .. -+.|+-|.+++|-- ....++|+++...-.......+
T Consensus 112 vwd~~sg~iv~sf~~-------------------~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~l 171 (561)
T COG5354 112 VWDIASGMIVFSFNG-------------------ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNL 171 (561)
T ss_pred EEeccCceeEeeccc-------------------cCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhc
Confidence 999999988765221 2222 33 67899999988766 3446999997322111211122
Q ss_pred ecccCCeeEEEEecCCCcEEEEE-----EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEE-------
Q 001160 450 DAHVGGVNDIAFAHPNKQLCIVT-----CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST------- 517 (1134)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~s-----g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~------- 517 (1134)
. ...|....|+|.+....|+. .+.++++++|.+..++.+.+-.-....=..+.|.+.+ .+|+.-
T Consensus 172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ks 247 (561)
T COG5354 172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKS 247 (561)
T ss_pred c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeec
Confidence 1 35688899999865434443 4678899999998777665432222222334555444 443321
Q ss_pred ----ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE
Q 001160 518 ----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1134)
Q Consensus 518 ----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1134)
-....+.++++......... ...++|...+|.|.++.+++++. .....+.++|++.. ....+... .=+.
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g--~~pa~~s~~~lr~N-l~~~~Pe~---~rNT 320 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISG--YMPASVSVFDLRGN-LRFYFPEQ---KRNT 320 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEec--ccccceeecccccc-eEEecCCc---cccc
Confidence 11245778888744444443 55779999999999999887762 24667889998865 43333322 3355
Q ss_pred EEEeCCCCEEEEEeCC---CeEEEEECCCCeeEE-EEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEEEECCC
Q 001160 594 VQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLT-TVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKILANSD 663 (1134)
Q Consensus 594 ~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~iw~~~~ 663 (1134)
+.|+|.+++++.++-| |.+.+||........ .+.+. ...-+.|+||++++.+... |..+.||++..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~----n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL----NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC----CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 7799999999998744 789999988765544 55543 3466789999999887654 78899999865
Q ss_pred c
Q 001160 664 G 664 (1134)
Q Consensus 664 ~ 664 (1134)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 5
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-11 Score=125.51 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=188.3
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC-CCeEEEEeeccCCccEEEEEecCCeEEEEEcc
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~ 529 (1134)
.|...-+.|..+|||++ +++||...-.|++||+..-... |..|. ..+..+.+. +.|-..++.-..|.+|.+...-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence 46777889999999997 7899999999999998765543 33332 333333222 1222445555566666654211
Q ss_pred CCCceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC
Q 001160 530 YLGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608 (1134)
Q Consensus 530 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 608 (1134)
.......++. .-..++++. ...+++.++ ...|+-++++.|..+..|..... .++++..++....|++|+.
T Consensus 125 G~hy~~RIP~---~GRDm~y~~~scDly~~gs-----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 125 GRHYRTRIPK---FGRDMKYHKPSCDLYLVGS-----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTE 195 (703)
T ss_pred CeeeeeecCc---CCccccccCCCccEEEeec-----CcceEEEEccccccccccccccc-cceeeeecCccceEEeccc
Confidence 1101111111 112344443 333444433 33499999999999999887765 8999999999999999999
Q ss_pred CCeEEEEECCCCeeEEEEeCCC---------CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 609 EFQIKFWDMDNMNMLTTVDADG---------GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 609 dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
+|.|.+||.+....+.++.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+...++..-.+...++.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 9999999999888777665332 2345899999999999999999999999999887444332222221111
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
. +.|- -..+...+++.....+++||-.++....
T Consensus 276 ~-------------------------l~~~----------------------~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 276 K-------------------------LDWQ----------------------DTDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred e-------------------------eccc----------------------ccCCCceEEecchHHhhhcccccCCcee
Confidence 0 0110 0113345566666899999988765443
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
.+. ....+..+++-|++-.++++-.++.+..|-++.
T Consensus 309 siE--------pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 309 SIE--------PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ecc--------ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 332 345588999999999899888887777765544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-09 Score=113.02 Aligned_cols=203 Identities=15% Similarity=0.112 Sum_probs=119.6
Q ss_pred EEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-ceEE--
Q 001160 844 ACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-DEVK-- 917 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-~~~~-- 917 (1134)
..++++|||+++.+.. +..|.+.|+.+++.+..+.... ...-...+. +..+ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3467777887777664 5778888888888777776422 111122222 2221 122344433332221 2111
Q ss_pred --EEecCcccceE-EEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC----CCCcCceEEEECCCCcEE
Q 001160 918 --TKLKGHQNRIT-GLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ----SPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 918 --~~l~~h~~~i~-~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~fspdg~~l 989 (1134)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+.............. -......-++++|||+++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11111001100 014456 8877766665 99999997654432222222111100 011344459999999998
Q ss_pred EEEE---C--------CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCcceeeec
Q 001160 990 LVVH---E--------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGF-CDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 990 ~~~~---d--------~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~~-~dg~I~vwd~~~~~~~~~~ 1055 (1134)
.+.. . +.|.++|. +.+.+..+.. ...+..++|||||+ +|++.+ .++.|.++|..+++.+.++
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 1 57999999 6666666554 46899999999999 877666 5788999999999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=115.26 Aligned_cols=163 Identities=18% Similarity=0.320 Sum_probs=115.1
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 412 NRCVWGPDGLMLGVAFS----------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+.|+|+|++|++-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.+++|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46789999998886533 2345666664332222211222 345799999999999755666777889999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
||++ ++.+..+. ...+..+.|+|.+ ++|++++.+ |.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~--~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG--TQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec--CCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9986 77777774 5678899998865 899888754 679999999665554443 345789999999999998
Q ss_pred EeeC--CCCCCcEEEEeCCCCeeEEEe
Q 001160 559 CGTS--KEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 559 ~~~~--~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
+... ...|..++||+.. |+.+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEec
Confidence 8752 1235668999974 5555443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-10 Score=130.65 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=147.7
Q ss_pred cccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeecccccccccccccccc
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
++..|....+....+.+...+...+|||||+++++++..+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444544444445556778899999999999766655433 368899998876432 122
Q ss_pred CCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~i 481 (1134)
..+.+...+|||||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++++...+ ..|++
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 33445678999999988854 4444 6888899886532 34445556677899999995 23333333 36888
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-C--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-G--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+|+.+++... +...........|+|++ +.++..+.+ + .|.+||+.+++...... ........|+|||+.++.
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEE
Confidence 8888777533 22112223345676654 677666543 3 57888988765433222 122235689999999987
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.+.. .+...|++++.. +.....+..... .+...+|+|
T Consensus 391 ~~~~-~g~~~l~~~~~~-g~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATRQ-QGRGVLMLVSIN-GRVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEec-CCceEEEEEECC-CCceEECcCCCC-CcCCCccCC
Confidence 7642 234568888875 344444443322 455566665
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-09 Score=114.32 Aligned_cols=247 Identities=15% Similarity=0.177 Sum_probs=163.7
Q ss_pred CcCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCC-CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 408 AISVNRCVWGPDGLMLGVAFS----KHIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~----dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
......++++|++++|.+... ++.|..|++... ..+............-..++++|+++. ++++...++.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence 345678999999999999866 579999998875 344433343333445678999999994 34444569999999
Q ss_pred ECCC-CeeeEE---ec----------CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCCc-e---eEe-cCCCC
Q 001160 483 DVVA-GRKQYT---FE----------GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS-R---VDY-DAPGN 542 (1134)
Q Consensus 483 d~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~-~---~~~-~~~~~ 542 (1134)
++.. |..... +. .......++.++|++ +++++.. ....|.+|+++.... + ..+ ...+.
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9987 443322 21 123456788887765 6666554 456899999987652 1 122 23455
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--CCe--eEEEecCc----cC-cceEEEEEeCCCCEEEEEe-CCCeE
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGA--IKRTYSGF----RK-RSLGVVQFDTTRNRFLAAG-DEFQI 612 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~--~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~-~dg~i 612 (1134)
....++|+|+++++++... ..+.|.++++. ++. .+...... .. .....+.++|||++|+++. ..+.|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 7889999999999988763 57779999887 443 22332221 11 1467799999999988865 67889
Q ss_pred EEEECC--CCe--eEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECC
Q 001160 613 KFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1134)
Q Consensus 613 ~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~ 662 (1134)
.+|+++ +++ .+..+...+ .....++++|+|++|+++.. ++.|.+|++.
T Consensus 270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999994 233 333333322 24689999999999998874 6789999764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-10 Score=128.48 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=137.4
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---CcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
..|.++|...... +.+..+...+...+|+| |+++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 3588888864443 44555666788999999 89988887654 479999999886533 334556677899999998
Q ss_pred EEEE-EcCCC--cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC----CeEEEEeCCCcceecc
Q 001160 938 ALVS-SGADA--QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE----SQISVYDSKLECSRSW 1010 (1134)
Q Consensus 938 ~l~s-~~~D~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d----~~v~vwd~~~~~~~~~ 1010 (1134)
.|+. .+.++ .|++||+.+++... +. .+. .......|+|||++|+.+.+ ..|.++|+.+.....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l~---~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---LT---NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---CC---CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44443 58889998765321 11 111 12346789999999887432 2688888854444333
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCC---cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDG---AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
... ...+..+.|+|||++|+.++.++ .|.+||+.++.... +... .......|+| ||++|+.
T Consensus 318 ~~~---~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-----------~~~~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 TFR---GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-----------GLDESPSFAP-NGRMILY 381 (417)
T ss_pred ecC---CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-----------CCCCCceECC-CCCEEEE
Confidence 322 45677889999999999888776 79999998865432 2111 1112357888 6777777
Q ss_pred EeCCC
Q 001160 1088 GMSDG 1092 (1134)
Q Consensus 1088 ~~~Dg 1092 (1134)
.+.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 66654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-09 Score=122.96 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=141.5
Q ss_pred ccCCcCeEEEEEcCCCCEEE---EEeCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC----
Q 001160 405 NDAAISVNRCVWGPDGLMLG---VAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD---- 475 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~la---s~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~---- 475 (1134)
......+.+-+|||||+.++ +...+ ..|.+.++.+++..+ +....+.....+|+|||+. ++++...
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~ 255 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGNP 255 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCCc
Confidence 33455677889999998633 33333 468888888775432 2234445567899999995 2333322
Q ss_pred CCcEEEEECCCC---eeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEc--cC-CCceeEecCCCCcEEEEE
Q 001160 476 DKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLY--DY-LGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 476 d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~--~~-~~~~~~~~~~~~~v~~~~ 548 (1134)
|-.+.+|++..+ +......++.+.....+|+|++ ..|+..+ .+|...+|.+ .. +.....+......+....
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECcccccceEEeccCCCCcccee
Confidence 334455777653 3333333333444667887754 7666655 4666556644 32 223344444455677889
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeeEEE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~ 625 (1134)
|+|||+.|+..+.. ++...|.+||+.+++....... .. .+....|+|||+.|+..+ ....|+++|+.+++....
T Consensus 334 wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 334 WSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-PE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-CC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99999999977642 2356799999998876543332 22 466789999999887643 246799999988776554
Q ss_pred EeCCCCCCCcceEEEccCC
Q 001160 626 VDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~ 644 (1134)
.... ..+...+|+|-.
T Consensus 411 t~~~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 411 VIGS---GEKRFPSWGAFP 426 (428)
T ss_pred ecCC---CcccCceecCCC
Confidence 4322 235667888743
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-10 Score=129.75 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=144.0
Q ss_pred cccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccccc
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
++..|....+....+.+...+.+..|||||++++.+...++ .|.+||+.+++... +..
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~ 259 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTS 259 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecC
Confidence 33334333333344456778999999999997665554444 58888988775422 111
Q ss_pred CCcCeEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVA-FSKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~-~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i~i 481 (1134)
..+.....+|||||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|++
T Consensus 260 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 260 FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYR 334 (448)
T ss_pred CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 22234578999999988764 5555 4777888876532 33445556778999999995 233343333 5777
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
+|+.+++... +..........+|+|++ ++++..+. ++ .|.++|+.++.... +... .......|+|||+.++.
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEE
Confidence 7887776543 22122223445777654 66655544 44 35556776655433 2221 12234589999999987
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.... ++...+++++. +|.....+..... .+...+|+|
T Consensus 410 ~~~~-~g~~~l~~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 410 STTY-QGKQVLAAVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEec-CCceEEEEEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 6642 33456888886 5666666655433 566677776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-09 Score=113.93 Aligned_cols=293 Identities=11% Similarity=0.129 Sum_probs=187.1
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
.|.-+.|||+.++|++-+..-...-|+-. ....+.+||+.+|...+........ ...-.-..||.|++
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDK 318 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCC-ccccceEEeccCCc
Confidence 36678899999999987754332222210 0113567777888766543321001 12223478999999
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCceEEEEecCcccceE
Q 001160 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
|+|--....|.||+..+..++-.-.-.-..|....|+| .+++||.=+.. ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999987655443333456789999999 88999875432 4688888888888887666655445
Q ss_pred EEEEecCCCEEEEEcC----------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E--C
Q 001160 929 GLAFSPTLNALVSSGA----------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H--E 994 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~----------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~--d 994 (1134)
.|.|-.+|.+|+.--. =..+.|+.+...+. ....+. ....+...+|-|.|..+++- . .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeee-------cchheeeeeeccCCCeEEEEEccccc
Confidence 6788888888875321 11244555544331 111111 11467889999999998883 2 3
Q ss_pred CeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEEEE---ecCCcEEEEeCCCcceeeecCCcccccccccCCC
Q 001160 995 SQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAG---FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNT 1069 (1134)
Q Consensus 995 ~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~---~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1134)
.++.+|.++ ......+...+ ....+.+.|||.|++++.+ |..|.+.++|.........-...+
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh---------- 537 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH---------- 537 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc----------
Confidence 578889883 33333332233 4567889999999987664 457889999988532222111111
Q ss_pred CccEEEeecCCCCCEEEEEeCC------CcEEEEecC
Q 001160 1070 AHPLVIAPHPSEPNQIALGMSD------GAVHVVEPS 1100 (1134)
Q Consensus 1070 ~~~~~~~~~~~d~~~l~s~~~D------g~v~vW~~~ 1100 (1134)
....-+-|+| .|+|++++++- .-.++|...
T Consensus 538 ~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 538 FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 2233588999 67999998863 345677764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=124.80 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=142.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MI 479 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i 479 (1134)
..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .|
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~I 269 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEI 269 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCceE
Confidence 3467789999999999999887643 469999998875432 2223344567899999994 233454454 68
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++||+.+++. ..+..+........|+|++ ..++..+. ++ .|.++|+.+++... +...........|+|||+++
T Consensus 270 y~~d~~~~~~-~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 270 YVMDLASRQL-SRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEECCCCCe-EEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8889988765 3455555556667787754 66655543 33 57777776655433 22222334567899999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeeEEEEeCCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..++++++... ....+..+. .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 877642 23446899999887653322221 12246899999998876633 35777777543 333443322 2
Q ss_pred CcceEEEcc
Q 001160 634 ASPRLRFNK 642 (1134)
Q Consensus 634 ~v~~~~~s~ 642 (1134)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667766
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=124.64 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=140.9
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc--E
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSK---HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM--I 479 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~--i 479 (1134)
..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++. |
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~I 288 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPEI 288 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeEE
Confidence 3466789999999999999887543 368899998875421 2222333457899999995 3334555664 8
Q ss_pred EEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 480 KVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 480 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
++||+.+++. ..+..+.......+|+|++ +.++..+ .++ .|.++|+.+++... +..........+|+|||+++
T Consensus 289 y~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 289 YVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 8889887764 4455555566778887754 6665554 344 46666766555433 22233334567899999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC-CC--eEEEEECCCCeeEEEEeCCCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+..+.. .+...|.++|+.+++... +.... ......|+|+|+.++..+. ++ .+++++. ++.....+..+. .
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--G 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--C
Confidence 887642 233467778988876533 22221 1223579999998877553 33 4777787 455555554432 2
Q ss_pred CcceEEEcc
Q 001160 634 ASPRLRFNK 642 (1134)
Q Consensus 634 ~v~~~~~s~ 642 (1134)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 456677776
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-09 Score=110.31 Aligned_cols=239 Identities=11% Similarity=0.034 Sum_probs=150.8
Q ss_pred eccCCCEEEEEe-----------CCeEEEEECCCCeEEEEecCCCC-------ceEEEEEcCCCCcEEEEEe-C-CCcEE
Q 001160 848 LSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-E-DSSVQ 907 (1134)
Q Consensus 848 ~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~~lasg~-~-dg~i~ 907 (1134)
+||||+.++++. ++.|.+||..+++.+..+..... ....+++|| ||++|.+.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999887764 36799999999999988874322 234789999 888888665 4 68999
Q ss_pred EEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC-CC
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN-DQ 986 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp-dg 986 (1134)
+.|+.+++.+..+.--. ...-...+.+ ..++- +.|+......+.+.............+...+ . ...-.|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~-v-~~rP~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTAND-TFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY-L-INHPAYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCC-ccEEE-eecCceEEEEecCCCceEEeeeeeecCCccc-c-ccCCceEcCCC
Confidence 99999999998876422 2222222222 22222 2344444433322111111111111110000 0 01114556 99
Q ss_pred cEEEEEECCeEEEEeCCCcceec---c---CCC----CCCCCCeEEEEEccCCCEEEEEe----------cCCcEEEEeC
Q 001160 987 THLLVVHESQISVYDSKLECSRS---W---SPK----DALPAPISSAIYSCDGLLVYAGF----------CDGAIGVFDA 1046 (1134)
Q Consensus 987 ~~l~~~~d~~v~vwd~~~~~~~~---~---~~~----~~h~~~v~~v~~s~dg~~l~~~~----------~dg~I~vwd~ 1046 (1134)
+++.++..|+|.+.|+.+..... + ... .-..+.+.-+++++|++++++.. ..+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 99999888999999962221111 1 111 00234455599999999888743 2247999999
Q ss_pred CCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001160 1047 ETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
.+++.+.++... ..+..++++| |++ +|.+.+ .++.|.+.|+.+.+.
T Consensus 287 ~t~kvi~~i~vG-----------~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 287 KTGKRLRKIELG-----------HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCeEEEEEeCC-----------CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999999888632 4566889999 667 666655 678999999988773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-10 Score=127.51 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=145.1
Q ss_pred CccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCC--CcEEEEEccCccccccccceeecccccccccccccc
Q 001160 327 PNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..++..|.........+.+...+.+.+|||||++++++...+ ..|.+||+.+++... +
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~ 229 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------V 229 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------e
Confidence 334555544344444455777899999999999655544332 479999998875432 2
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-eCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCC--c
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-FSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK--M 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~--~ 478 (1134)
..+.+.+.+++|+|||+.|+.. +.+ ..|.+||+.++... .+..+........|+|||+ .|+..+ .++ .
T Consensus 230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~ 303 (417)
T TIGR02800 230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQ 303 (417)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCce
Confidence 2345567789999999988754 333 35888998876432 3334555556789999999 454443 333 6
Q ss_pred EEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCE
Q 001160 479 IKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 555 (1134)
|+++|+.+++.. .+..+...+....|+|++ .+++.++.++ .|.+||+.+..... +.. ........|+|||+.
T Consensus 304 iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~ 378 (417)
T TIGR02800 304 IYMMDADGGEVR-RLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRM 378 (417)
T ss_pred EEEEECCCCCEE-EeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCE
Confidence 888898776643 444455566777887754 7888877765 78899988744332 222 223345689999999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
|+...... +...+++.+.. +.....+..
T Consensus 379 l~~~~~~~-~~~~l~~~~~~-g~~~~~~~~ 406 (417)
T TIGR02800 379 ILYATTRG-GRGVLGLVSTD-GRFRARLPL 406 (417)
T ss_pred EEEEEeCC-CcEEEEEEECC-CceeeECCC
Confidence 98877532 23456666643 444444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=117.30 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=155.7
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe------c------------CCCcEEEEEEcCCCc
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA------H------------PNKQLCIVTCGDDKM 478 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~sg~~d~~ 478 (1134)
.|-+.++|....||.+++|+...++....+.....-.+..++..|. | .+...+++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3456799999999999999999876544322222233445555553 1 122237889999999
Q ss_pred EEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 479 IKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 479 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
|.++++..|+....+. .|.+.|.++.++..- ..|.+++.|+.+..|+.........+......+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888776 599999999886544 789999999999999999888888888888899999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC-----CCEEEE-EeCCCeEEEEECCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT-----RNRFLA-AGDEFQIKFWDMDN 619 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~ 619 (1134)
++++ ++|.+||+++++.+..|.+|.. +|++++|.-+ |.++++ ...+..+.+|-+..
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9885 4699999999999999999998 9999999877 677776 44666678887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-09 Score=113.22 Aligned_cols=190 Identities=16% Similarity=0.241 Sum_probs=148.3
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--------------------cCC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------------------GPD 419 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--------------------spd 419 (1134)
.++|..+.||.++|||+.+++...... + ...-++...+..| +.|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~-------------p---~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFA-------------P---IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeec-------------c---chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 478888999999999999886543210 0 0011223333333 224
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
-..++-|...|.|.+|++..|+.-... .-..|.++|.++.++.+-. .|.+++.|+.+..|+..+++.++.+......
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 457888889999999999988754422 2346999999999998888 8999999999999999999999999999999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC-----CCEEEEEeeCCCCCCcEEEEeC
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD-----GTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+.+++++|+ |..+++++ ++|++||+++.+....+.+|.++|.+++|..+ |.++++... .+.-+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999999876 58888876 68999999999999999999999999999887 788876542 3444777765
Q ss_pred C
Q 001160 575 S 575 (1134)
Q Consensus 575 ~ 575 (1134)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 4
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-08 Score=109.95 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=96.2
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.++.++.++.|..+|..+|+.+..+............ ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5788888999999999999988766543322222222 336788889999999999998888776554332211112
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
. .+..++.+. .++.++.||.++|+.+..+..... .+ .+.... +..++.+..++.+..+|..+|+.+
T Consensus 143 v--~~~~v~v~~----~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 143 V--ANGLVVVRT----NDGRLTALDAATGERLWTYSRVTP-ALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred E--ECCEEEEEC----CCCeEEEEEcCCCceeeEEccCCC-ceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 2 234555554 377899999999998877654332 11 111122 246777888899999999888765
Q ss_pred EEE
Q 001160 624 TTV 626 (1134)
Q Consensus 624 ~~~ 626 (1134)
...
T Consensus 214 W~~ 216 (377)
T TIGR03300 214 WEQ 216 (377)
T ss_pred eee
Confidence 543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=108.73 Aligned_cols=211 Identities=15% Similarity=0.244 Sum_probs=137.2
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
.++||.+.|++...-|-.. -+++.+.|.+++||--. .++.-..+. ....+++++.+.+.. ..|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~--~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES--RRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc--eEEEEEEecceEEE
Confidence 5678999999888888777 68999999999999633 344333332 234567777776544 78899999999988
Q ss_pred EEcc----CCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe-CCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 526 WLYD----YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 526 wd~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
+.+. ..........|...+..+.|+-...++++++. |..+ .|- .+.+..+..+.... .-.++.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 8654 33344456678889999999999999999875 3223 333 23333222211110 0011111111
Q ss_pred CEEEEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 601 NRFLAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
+.+.|...|.|.+-.+. .-.++.++.++ ...+.+++|.+....|.+|..|..+.+||+..++.....+.+
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 44445556666655443 34455566555 568999999999999999999999999998665333333333
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=108.66 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=122.8
Q ss_pred chHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHH
Q 001160 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFF 74 (1134)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~ 74 (1134)
..+|+.|||+.||-..||.++|+.+.+|+|+..+ -.+.|.+|..|+-++|+..+.+|.+..-.. ...+.|
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~F 103 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELFF 103 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHHH
Confidence 4678999999999999999999999999999882 457889999999999999999885432222 223899
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc---chhhhccCCCchhHHHHHHHHHHhhc
Q 001160 75 EIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR---QNEQLSKYGDTKSARNIMLVELKKLI 151 (1134)
Q Consensus 75 ~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~~r~~l~~~l~~~~ 151 (1134)
.+.+|+++|++..+...+|+.|+|.++.|...-++..++.|...+..--++ ..+...-+ ....|.++...+.+.|
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~--~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL--SQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999777777777777655432222 11111000 2344777777766665
Q ss_pred ccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 001160 152 EANPLFRDKLSFPSFKSSRLRTLINQSLNWQ 182 (1134)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~q~~~~Q 182 (1134)
-...- . --..+|..||+.-+..|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 33111 0 01457888886555555
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-09 Score=102.39 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=162.4
Q ss_pred CCCeeEEEEec---CCCeEEEEEeCCCcEEEEEccCcccccc-ccceeeccccccccccccccccCCcCeEEEEEcCCCC
Q 001160 346 GSNVMSMDFHP---QQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1134)
Q Consensus 346 ~~~V~~v~~sp---dg~~llasg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~ 421 (1134)
...+..+.|.. +|...++-+..+|.|.++.....+.... +.+.. ..-......++.|++.+.
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT 134 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence 34566667753 4443556667788999987654332211 00000 000111355788999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEE-ecCCCCC
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYT-FEGHEAP 499 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 499 (1134)
.++++..+|.+.+-+.... .+.....+++|.-.++...|+..... ++.+|++|+.+..||++ .++.+.. .+-|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 9999999999985554432 23334477899999999999877665 89999999999999998 4444443 5568999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC--EEEEEeeCCCCCCcEEEEeCCCC
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
|.+|.-+|. ...++++|+.|-.|++||.++......-....+.|..+.++|.-. .+++|-.+ | .++.+...+
T Consensus 213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~--G---~ki~~~~~~ 286 (339)
T KOG0280|consen 213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN--G---AKILDSSDK 286 (339)
T ss_pred eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc--C---ceEEEeccc
Confidence 999987765 347999999999999999997776665555668899999999543 34444321 1 444444432
Q ss_pred --e---eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEE-EEECCCC
Q 001160 578 --A---IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIK-FWDMDNM 620 (1134)
Q Consensus 578 --~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~ 620 (1134)
+ .....+.|.. -...-.|......+++++ .|+.++ +|-.-++
T Consensus 287 ~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2 2233444443 333334433335577765 566644 6654443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-09 Score=101.22 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=138.2
Q ss_pred eEEEEeccCCCEEEEEe-CCeEEEEECCCCeEE--EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEE
Q 001160 843 AACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKT 918 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~ 918 (1134)
..++.|++.+..++++. +|.+.+-+....... +..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 46788889898888886 798886666555443 47889999999999998788899999999999999998 455555
Q ss_pred E-ecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCC--cEEEEEE
Q 001160 919 K-LKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVH 993 (1134)
Q Consensus 919 ~-l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~~ 993 (1134)
. .+-|...|.++.-+| ++.+++||+-|..|++||..+ ++.+. .... .++|..+..+|-- +.|+++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~----~~~v-----~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF----KAKV-----GGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc----cCcc-----ccceEEEEecchhhhHHHHHHH
Confidence 4 567889999998876 578999999999999999985 23211 1111 1689999999864 3455565
Q ss_pred CCeEEEEeCCCccee---ccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEE-EEeCCCc
Q 001160 994 ESQISVYDSKLECSR---SWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIG-VFDAETL 1049 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~---~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~-vwd~~~~ 1049 (1134)
-+..+|-+.+.+... .+.....|.+-+..-.|.....+|||++ .|+.++ +|-.-++
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 555666666222222 3333444554444455533345678754 566644 7755544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-08 Score=121.34 Aligned_cols=257 Identities=14% Similarity=0.165 Sum_probs=161.6
Q ss_pred EEEEeccCCCEEEEE-e-CCeEEEEECCCCeEEEEecC--C------------CCceEEEEEcCCCCcEEEEE-eCCCcE
Q 001160 844 ACIALSKNDSYVMSA-S-GGKVSLFNMMTFKVMTMFMS--P------------PPAATFLAFHPQDNNIIAIG-MEDSSV 906 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~-s-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~lasg-~~dg~i 906 (1134)
..+++++++..+.++ . ++.|++||... +.+..+.+ . -.....+++++ +++.|.++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 568898865544444 4 68899999864 44444332 1 12357899998 66655444 456789
Q ss_pred EEEEcCCceEEEEecCc-----------------ccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCccccccee---ee
Q 001160 907 QIYNVRVDEVKTKLKGH-----------------QNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRF---IQ 965 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h-----------------~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~ 965 (1134)
+++|..++.. .++.+- -..-..++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 333210 11236799999 56777888888999999998765321000 00
Q ss_pred cCCCCC---CCCcCceEEEECCCCcEEEE--EECCeEEEEeCCCcceeccCC--------------CC-----CCCCCeE
Q 001160 966 APAGRQ---SPLVGETKVQFHNDQTHLLV--VHESQISVYDSKLECSRSWSP--------------KD-----ALPAPIS 1021 (1134)
Q Consensus 966 ~~~~~~---~~~~~v~~~~fspdg~~l~~--~~d~~v~vwd~~~~~~~~~~~--------------~~-----~h~~~v~ 1021 (1134)
...+.. .....+..++|+|||++|++ ..++.|++||++......... .. .....-.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 11135678999999986665 357899999984322211110 00 0112346
Q ss_pred EEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccc-cccc--ccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY-IPTY--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1022 ~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
+++|+++|.++++-+.++.|++||..++........... ...+ ....-..|..+++++ +|+++++.+.+++|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888999999999998765533211000 0000 011223677899998 789999999999999999
Q ss_pred cCCCcc
Q 001160 1099 PSDAEL 1104 (1134)
Q Consensus 1099 ~~~~~~ 1104 (1134)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 988763
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=119.46 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=195.6
Q ss_pred ccCCcceeEeeCCCCCCccccCcc-------ccceEEEEecCC--CCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCcc
Q 001160 311 RTGQSDEVSFAGVAHTPNVYSQDD-------LTKTVVRTLNQG--SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRE 380 (1134)
Q Consensus 311 ~~~~~~~v~~s~~g~~~~~~~~~~-------~~~~~~~~l~h~--~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~ 380 (1134)
-.+++..+..+|-|+.++..+..+ .++.+.+-+.|- =.|-.+.|||... -+-++......-.+|++....
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 345788899999998887765533 467777777763 3577888988653 234455556777889887543
Q ss_pred ccccccceeeccccccccccccccccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEE
Q 001160 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459 (1134)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 459 (1134)
.-. ...++.+|+..|+.+.|.|. ...+|+++.|..+..||+.+.... ...+..-......|
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--FYSTSSWRSAASQV 164 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--eeeeecccccCcee
Confidence 221 11236789999999999995 568999999999999999876432 22333444567789
Q ss_pred EEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-
Q 001160 460 AFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY- 537 (1134)
Q Consensus 460 ~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~- 537 (1134)
+|+.... .+.+.+..+.|.+||++.| .++..+++|...|+.+.|..... ..+.+.+.|++|+.||.+........
T Consensus 165 kwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 165 KWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred eecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeeccccccccccee
Confidence 9987666 4566677889999999875 56788999999999998865433 57889999999999999865543322
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE---------EeCCC-CeeEEEecCccCcceEEEEEeCCC-------
Q 001160 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE---------WNESE-GAIKRTYSGFRKRSLGVVQFDTTR------- 600 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~------- 600 (1134)
.....+|..-.+.|-|+-.+.--.. |+..+.+ |+..+ .+++.+|.||.+ .|....|-..+
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCC
Confidence 2234466666777755543332211 1223333 44333 468899999987 44433332211
Q ss_pred ---CEEEEEeCCCeEEEEECCC
Q 001160 601 ---NRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 601 ---~~l~~~~~dg~i~iwd~~~ 619 (1134)
-.|++-+.|..+++|-+.+
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 2689999999999998864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.8e-08 Score=120.02 Aligned_cols=261 Identities=10% Similarity=0.062 Sum_probs=163.0
Q ss_pred EEEEEecC-CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCE
Q 001160 776 VRLIYTNS-GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY 854 (1134)
Q Consensus 776 ~~~~~s~~-g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~ 854 (1134)
..++++++ +..+++-..++.|+++|........-+. .. . .....|..-. .+ -.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g-~--~G~~dG~~~~------a~-f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TG-E--EGLRDGSFED------AT-FNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CC-C--cCCCCCchhc------cc-cCCCcEEEEeCCCCE
Confidence 46788875 5566666677889998864321100000 00 0 0000111000 01 234578999999887
Q ss_pred EEEEe--CCeEEEEECCCCeEEEEecCC-----------------CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 855 VMSAS--GGKVSLFNMMTFKVMTMFMSP-----------------PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 855 la~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
|.++. ++.|+++|..++.. .++.+- -..-..++|+|+++.++++.+.++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77775 57899999977653 333210 11236799999566677777788999999988775
Q ss_pred EEEEecC---------c------ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccce--------eeecC---C
Q 001160 916 VKTKLKG---------H------QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSR--------FIQAP---A 968 (1134)
Q Consensus 916 ~~~~l~~---------h------~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~--------~~~~~---~ 968 (1134)
.. .+.+ + -....+|+++||++ ++++-+.++.|++||+.++...... .+... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 2211 1 12346799999998 4555667789999999876521100 00000 0
Q ss_pred C--CCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCC-----------CCCCCCeEEEEEccCCCEEEE
Q 001160 969 G--RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPK-----------DALPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 969 ~--~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~-----------~~h~~~v~~v~~s~dg~~l~~ 1034 (1134)
+ ..........++|+++|..+++ ..+++|++||.++..+..+... .+.......++++++|+++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0001124578999999997777 5788999999955554433221 112346788999999999888
Q ss_pred EecCCcEEEEeCCCcce
Q 001160 1035 GFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 1035 ~~~dg~I~vwd~~~~~~ 1051 (1134)
-+.+++|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999865
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=106.99 Aligned_cols=286 Identities=12% Similarity=0.100 Sum_probs=171.2
Q ss_pred cccCccccceEEEEecCCCCee-EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVM-SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~-~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
++.+|..+++.+-...-...+. .+. .++. .++.++.+|.+..+|..+|+.+.+..+
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~-------------------- 133 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERLSGGVG--ADGG-LVFVGTEKGEVIALDAEDGKELWRAKL-------------------- 133 (377)
T ss_pred EEEEEccCCcEeeeecCCCCcccceE--EcCC-EEEEEcCCCEEEEEECCCCcEeeeecc--------------------
Confidence 3444555566655554322322 222 2344 355678899999999999987643111
Q ss_pred CcCeEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCe-----eEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 408 AISVNR-CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----NDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 408 ~~~V~~-i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
.+.+.+ ... .+..++.++.++.+..||.++|+.+... ......+ .+.... + . .++.+..++.+..
T Consensus 134 ~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~-~-~--~v~~~~~~g~v~a 204 (377)
T TIGR03300 134 SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA-D-G--GVLVGFAGGKLVA 204 (377)
T ss_pred CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE-C-C--EEEEECCCCEEEE
Confidence 111111 111 3456777888999999999998765422 1111110 111221 2 3 5677888999999
Q ss_pred EECCCCeeeEEecCCCC-------CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 482 WDVVAGRKQYTFEGHEA-------PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~-------~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
+|+.+|+.+........ ....+.-+|.-.+..++.++.+|.+..||..+++......... ..... .++.
T Consensus 205 ld~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~--~~~~ 280 (377)
T TIGR03300 205 LDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA--VDDN 280 (377)
T ss_pred EEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce--EeCC
Confidence 99999987654331100 0001111111123578888899999999999887766554221 11122 3456
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
.++.++ .++.++.+|..+|+.+............+... .+..+++++.+|.|+++|..+++.+..+..+... .
T Consensus 281 ~vyv~~----~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~-~ 353 (377)
T TIGR03300 281 RLYVTD----ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG-I 353 (377)
T ss_pred EEEEEC----CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-c
Confidence 666664 37889999999998876653322212222222 3568999999999999999999999888765421 1
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEE
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
....++. +..|+.++.||.|..|
T Consensus 354 ~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE--CCEEEEEeCCceEEEe
Confidence 1222222 3458889999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=110.31 Aligned_cols=246 Identities=14% Similarity=0.196 Sum_probs=171.5
Q ss_pred cccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-cc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 402 ALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-EL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 402 ~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~-~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
..+.||...|..++--.+.+-+++++.|.+|++|.++... .+ ....+++.|..+|.++.|..+.+ +++++ |+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~ 804 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DG 804 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cC
Confidence 3478999999999888888899999999999999987532 12 24457789999999999999988 66655 88
Q ss_pred cEEEEECCCCeeeEEec--CCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccCCCceeEe-----cCCCCcEEEEEE
Q 001160 478 MIKVWDVVAGRKQYTFE--GHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAY 549 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~ 549 (1134)
.|++||.--|+.+..+. ...+.+..+...++-+...++.+ +...+|+++|.+..+-...+ .+....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988887765332 12223333333344343555555 78899999999887765543 334557899999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEE-EECCCCeeEEEEeC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF-WDMDNMNMLTTVDA 628 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 628 (1134)
.+.|++++++-. .|.|.+.|.++|+.+..++...- ....++ .|..+.++....|.++.+ |..-.+........
T Consensus 885 a~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 885 ADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred ccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 999999998764 78899999999998887664322 121222 345566777777888888 98877765554443
Q ss_pred CCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.. +. --.-.-|.-++++...+.+.+|.-
T Consensus 959 ppe--pa--hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 959 PPE--PA--HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCc--ch--hhhhccCceeEEeccCcEEEEEec
Confidence 211 10 001123667777777778888853
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-07 Score=104.27 Aligned_cols=217 Identities=12% Similarity=0.020 Sum_probs=131.8
Q ss_pred CCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC---CCcEEEEEccCccccccccceeecccccccccccc
Q 001160 326 TPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
...++..|....+....+.. +.+....|||||+++++..+. +..|.++|+.+++...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred cceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 34445544433333333334 388899999999864443333 3478889998876432
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFS---KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-- 477 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-- 477 (1134)
+....+.+...+|||||+.|+.... +..|.++|+.+++. + .+..+........|+|||+.+++.+ ...+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCc
Confidence 2234455667889999998876532 45788888877653 2 2333333344568999999643333 2223
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCCCCcEEEEE
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMA 548 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1134)
.|.+.|+.+++..+.... .. ....|+|++ +.++..+.. ..|.+.|++++.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GK--NNSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CC--cCceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688889888776433221 11 123676654 666665543 367788887765433 3322 2334688
Q ss_pred ECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 549 YSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 549 ~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
|+|||+.++..... .+...+.+.++..
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence 99999999877643 2344577777654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=125.59 Aligned_cols=200 Identities=14% Similarity=0.228 Sum_probs=161.4
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
+.+-..|.++.=+|...+.++|+.||.|++|....++.+....+. | ...|+.+.|+.+|. .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g-~s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-G-NSRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-C-cchhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 345567888888999999999999999999999988877654442 3 38899999999999 6888888999999996
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEccCCCce-eEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGSR-VDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
. .++....+.|........|.. ..+++++ .++.+.+||....... ..-..|.+.++++++.|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 666677788988888888765 3566653 5788999997644332 23377889999999999999999998
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
. +|.|++||++..+.+++++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 5 77899999998887777664 33 457899999999999999998877777653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=111.86 Aligned_cols=217 Identities=17% Similarity=0.245 Sum_probs=153.3
Q ss_pred EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC-------ceEEEEecCcccceEEEEEecCCCEEEEEcCCC
Q 001160 874 MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVSSGADA 946 (1134)
Q Consensus 874 ~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~ 946 (1134)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..+++.|..+|.++.|-.|-++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999887666 666778899999999999863 24677889999999999999999988876 78
Q ss_pred cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE--CCCCcEEEEE--ECCeEEEEeC-CCcceecc--CCCCCCCCC
Q 001160 947 QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF--HNDQTHLLVV--HESQISVYDS-KLECSRSW--SPKDALPAP 1019 (1134)
Q Consensus 947 ~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f--spdg~~l~~~--~d~~v~vwd~-~~~~~~~~--~~~~~h~~~ 1019 (1134)
.|.+||---+..+....-....+ .+..+.- +-|...++++ ...+|+++|. ...-...+ ....+-.+-
T Consensus 805 giHlWDPFigr~Laq~~dapk~~------a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEG------AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred cceeecccccchhHhhhcCcccC------CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 89999987766543221111111 1222222 2244444443 5789999998 33332222 222333577
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEE-Ee
Q 001160 1020 ISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV-VE 1098 (1134)
Q Consensus 1020 v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~v-W~ 1098 (1134)
+.+++..+.|++++++-.+|+|.+.|..+|+.+..+++.. ...+-++ -|.| +.|+....|.++.| |-
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsd-q~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSD-QALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-Cchh-HHHHhhcccceeEeeeh
Confidence 8999999999999999999999999999999887766442 1111222 2434 68888888999999 98
Q ss_pred cCCCccccCCCCC
Q 001160 1099 PSDAELKWGGTPS 1111 (1134)
Q Consensus 1099 ~~~~~~~~~~~~~ 1111 (1134)
..++--.+...+|
T Consensus 947 aldgimh~q~kpp 959 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPP 959 (1034)
T ss_pred hcCCeeeeccCCC
Confidence 8877765655443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=124.85 Aligned_cols=214 Identities=16% Similarity=0.172 Sum_probs=156.6
Q ss_pred CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-CcccceEEEEEecCCCE
Q 001160 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~i~~l~~s~d~~~ 938 (1134)
++...-|..+.+.. .++.+-..|.++.=+| ...+.++|+.||.|++|....++.+..++ +-...|+.+.|+..|+-
T Consensus 2189 ~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk 2265 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASV--MIKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK 2265 (2439)
T ss_pred Cccccceeccccee--EeecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc
Confidence 34444444432222 2333566788888899 67788899999999999998887776664 23378999999999999
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-E---ECCeEEEEeCCCcceeccCCCC
Q 001160 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-V---HESQISVYDSKLECSRSWSPKD 1014 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~---~d~~v~vwd~~~~~~~~~~~~~ 1014 (1134)
...+..||.+.+|.+... ....-..|. .....+.|-. ..+++ + .++.+.+||........+. +.
T Consensus 2266 ~~i~d~dg~l~l~q~~pk------~~~s~qchn---k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~ 2333 (2439)
T KOG1064|consen 2266 FGIVDGDGDLSLWQASPK------PYTSWQCHN---KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HT 2333 (2439)
T ss_pred eeeeccCCceeecccCCc------ceeccccCC---ccccceeeee--hhhhccccCCCCCcccchhcccCccccee-ee
Confidence 999999999999998731 222223333 2445666655 55565 2 3578999998322222222 37
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcE
Q 001160 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1015 ~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
.|.+.++++++-|..++|++|+.+|.|++||+...+++++++. ++ ...++++|+..|.+
T Consensus 2334 ~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------------------~~--~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------------------LD--TREYFVTGSSEGNI 2392 (2439)
T ss_pred ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------------------hh--hhheeeccCcccce
Confidence 7899999999999999999999999999999999888877652 11 23699999999999
Q ss_pred EEEecCCCccccCCC
Q 001160 1095 HVVEPSDAELKWGGT 1109 (1134)
Q Consensus 1095 ~vW~~~~~~~~~~~~ 1109 (1134)
+||+++........|
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999999887544443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-06 Score=86.95 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=136.8
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCC--eEEEEe---cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTF--KVMTMF---MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~--~~~~~~---~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
++.+.||++||+.-|..|.|-..++. ..+.+. +.....=+-++||| |+.+||.+...|+|+++|+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999999988876652 222222 22334467899999 999999999999999999875443 333
Q ss_pred cC-------cccceEEEEEecCC------CEEEEEcCCCcEEEEeCCCcc--cccceeeecCCCCCCCCcCceEEEECCC
Q 001160 921 KG-------HQNRITGLAFSPTL------NALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 921 ~~-------h~~~i~~l~~s~d~------~~l~s~~~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
.. -...|.+|.|-+-. ..|+...-+|.++=+-+..+. .-+.........|. ..+|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 22 12457777775421 145555667777766654321 11111111111121 157999999999
Q ss_pred CcEEEEEE-----C-------CeEEEEeC-CC-----------cce---------eccC------CCCCCCCCeEEEEEc
Q 001160 986 QTHLLVVH-----E-------SQISVYDS-KL-----------ECS---------RSWS------PKDALPAPISSAIYS 1026 (1134)
Q Consensus 986 g~~l~~~~-----d-------~~v~vwd~-~~-----------~~~---------~~~~------~~~~h~~~v~~v~~s 1026 (1134)
.++|++++ + -.+..|.+ +. ..+ ..+. ........|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 99988842 1 13666765 11 000 0000 001125689999999
Q ss_pred cCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1027 CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
|||+.||+...+|.|.+|++.+..+......+
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 99999999999999999999998888777644
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-06 Score=85.71 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=135.3
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcc---cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQ---NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 887 l~~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~---~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
++.+. +|++||+. .|..|.|=..++. .++....... ..-..++||||+.+||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 56667 89988855 6778888765542 2333332222 3467899999999999999999999999987543211
Q ss_pred eeeecCCCCCCCCcCceEEEECCCC-------cEEEEEECCeEEEEeC------CCcceeccCCCCCCCCCeEEEEEccC
Q 001160 962 RFIQAPAGRQSPLVGETKVQFHNDQ-------THLLVVHESQISVYDS------KLECSRSWSPKDALPAPISSAIYSCD 1028 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg-------~~l~~~~d~~v~vwd~------~~~~~~~~~~~~~h~~~v~~v~~s~d 1028 (1134)
.......+ .....|..+.|-+-. .+|+....|.++-|-+ .......+.....+...|.++.++|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 11010111 111456677775543 3455577887777665 11222233333445789999999999
Q ss_pred CCEEEEEecC-----------CcEEEEeCCCcceeeecCCcccc--------------cc-----cccCCCCccEEEeec
Q 001160 1029 GLLVYAGFCD-----------GAIGVFDAETLRFRCRIGPSAYI--------------PT-----YAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1029 g~~l~~~~~d-----------g~I~vwd~~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~~~ 1078 (1134)
.++|++|+.. .-+..|.+-++............ +. ..-.....+..+..+
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 9988777631 13777887766554432110000 00 001123455577788
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCc--cccCC
Q 001160 1079 PSEPNQIALGMSDGAVHVVEPSDAE--LKWGG 1108 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~ 1108 (1134)
| ||..||+...+|+|.+|++..-. ++|.+
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 8 89999999999999999987544 66665
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-06 Score=87.00 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=144.6
Q ss_pred eEEEEecc-CCCEEEEEe-CC-eEEEEECCCCeEEEEecCCCCce--EEEEEcCCCCcEEEEEeC-----CCcEEEEEcC
Q 001160 843 AACIALSK-NDSYVMSAS-GG-KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGME-----DSSVQIYNVR 912 (1134)
Q Consensus 843 i~~~~~s~-dg~~la~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~lasg~~-----dg~i~iwd~~ 912 (1134)
.-.++.+| ++..++.+. .| ...+||..+++....+....+.- -.-.||+ ||++|.+.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34688899 566666676 45 48999999999988877554442 2578999 8999887644 3789999999
Q ss_pred -CceEEEEecCcccceEEEEEecCCCEEEEEc------------------CCCcEEEEeCCCcccccceeeecCCCCCCC
Q 001160 913 -VDEVKTKLKGHQNRITGLAFSPTLNALVSSG------------------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSP 973 (1134)
Q Consensus 913 -~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~------------------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~ 973 (1134)
+.+.+.++..|.-.--.+.+.|||+.|+.+- .+..+.+-|..+|+.+....+... -|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~-- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQ-- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc-ccc--
Confidence 6788888988876667888999997777652 233466677777775544333211 122
Q ss_pred CcCceEEEECCCCcEEEEEEC-C-------eEEEEeCCCcceeccCCC----CCCCCCeEEEEEccCCCEEEE-EecCCc
Q 001160 974 LVGETKVQFHNDQTHLLVVHE-S-------QISVYDSKLECSRSWSPK----DALPAPISSAIYSCDGLLVYA-GFCDGA 1040 (1134)
Q Consensus 974 ~~~v~~~~fspdg~~l~~~~d-~-------~v~vwd~~~~~~~~~~~~----~~h~~~v~~v~~s~dg~~l~~-~~~dg~ 1040 (1134)
..+..+++.++|..++.... + -|-+++.... +..+... ....+.|-+|+++++|.++++ +-.-++
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46899999999988777421 1 1444544211 2222111 122578999999999987754 446678
Q ss_pred EEEEeCCCcceeeecC
Q 001160 1041 IGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~ 1056 (1134)
+.+||..+|+.+....
T Consensus 241 ~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEECCCCCEeeccc
Confidence 9999999999987765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-07 Score=99.18 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 412 NRCVWGPDGLMLGVAF----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 412 ~~i~~spdg~~las~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+-..|+|...++|+++ ..|.|.||- ++|+.-+.. +..- .+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3456999999988875 357888875 344432211 2222 356799999876 8899999999999997776
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--C--CC--cEEEEEECCCCCEE-----
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P--GN--WCTMMAYSADGTRL----- 556 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~~~~l----- 556 (1134)
+.-.....|..+|..+.|++++ ..++++..-|.+.+|..+-.+....... | +. ...|...++++.-+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 6655556799999999998765 8999999999999998875444332211 1 11 23455566664322
Q ss_pred -EEEeeCCCCCCcEE-EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 557 -FSCGTSKEGESHLV-EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 557 -~~~~~~~~~~~~i~-~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
++.+ | +.-+- .++.+.....++.. + .-.|+|..++.++.+|+|+--|- +|+..........
T Consensus 170 aaVtg---D-e~alD~~fnwk~~~a~rs~~-k--------sgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 170 AAVTG---D-ESALDEPFNWKESLAERSDE-K--------SGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhccC---c-hhhhcccccCccchhhcccc-c--------cCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 2222 1 11121 22221111001110 1 12477888889999999988774 4455544443321
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEE
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
..+-|.+....+++...+-.+.++
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeEE
Confidence 234555544444444444344333
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-09 Score=117.81 Aligned_cols=216 Identities=13% Similarity=0.202 Sum_probs=159.0
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC-cEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-MIKVW 482 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-~i~iw 482 (1134)
+..|...-+|++||-+.+.|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... ...+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 66788999999999999999999999999999999998766 66789999999999999994 333333333 56799
Q ss_pred ECCC-CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cC---CCCcEEEEEECCCCCEEE
Q 001160 483 DVVA-GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DA---PGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 483 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~~~~l~ 557 (1134)
++.. +...++|.+ -.++.|+... +.-+.|.......+||+++.....++ .. ....-++..|+|+.++++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9864 555566643 3456676543 34455555577889999998776652 22 122347888999998887
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcce
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 637 (1134)
--| .+||.+..+.++.|..... .+ .-.|+|.|..++.-++ |||+++.+.+.....-.. ..
T Consensus 1247 ndG---------vLWDvR~~~aIh~FD~ft~-~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 NDG---------VLWDVRIPEAIHRFDQFTD-YG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred eCc---------eeeeeccHHHHhhhhhhee-cc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 532 4799998888888776543 22 3459999999988765 999999988877764432 56
Q ss_pred EEEccCCCEEEE
Q 001160 638 LRFNKEGSLLAV 649 (1134)
Q Consensus 638 ~~~s~d~~~l~~ 649 (1134)
+.|+..|..++.
T Consensus 1307 VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYA 1318 (1516)
T ss_pred EEeccCccchhh
Confidence 788887776553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.8e-06 Score=97.51 Aligned_cols=216 Identities=12% Similarity=0.103 Sum_probs=133.0
Q ss_pred CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEE-EEc-CCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCG-DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~-~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
..|.+-|.+... .+ .+... +.+....|+|||+.+.++ +-. .+..|.++|+.+|+..... ...+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~---~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QK---VIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-ee---EEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECC
Confidence 355555555433 12 22222 377889999999852222 222 2467999999888764433 3455566677877
Q ss_pred cCCccEE-EEEecC--CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 508 KESIQFI-FSTAID--GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 508 ~~~~~~l-~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
++ ..+ ++.+.+ ..|.++|+..+... .+...........|+|||+.++..+. ..+...|+++|+.+++..+...
T Consensus 243 DG--~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 243 DG--SKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CC--CEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc
Confidence 54 444 444444 45777787766533 33333333445689999999987763 3345579999998877644332
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC-
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN- 654 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg- 654 (1134)
. .. . ...|+|||++++..+.. ..|++.|+.++.... +.... ......|+|||+.|+..+.++
T Consensus 319 ~-g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~---~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 319 H-GK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG---VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred C-CC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC---CcCCeEECCCCCEEEEEEccCC
Confidence 2 11 1 24899999998876533 368888988876533 33221 224588999999887766532
Q ss_pred --cEEEEECCC
Q 001160 655 --GIKILANSD 663 (1134)
Q Consensus 655 --~i~iw~~~~ 663 (1134)
.+.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 355555543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-07 Score=103.27 Aligned_cols=302 Identities=11% Similarity=0.171 Sum_probs=192.2
Q ss_pred ccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC--cC
Q 001160 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA--IS 410 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~ 410 (1134)
+..+...--.++-.+++.++..+|.|+-+ |.++.-| +.+-|+...-.... .-.|. -.
T Consensus 11 ns~tf~kslsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~ 69 (1081)
T KOG0309|consen 11 NSPTFGKSLSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQ 69 (1081)
T ss_pred CCCccCceeEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce-------------------eeeccCcch
Confidence 33344444445566799999999999864 4555433 44555543221100 01122 23
Q ss_pred eEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-
Q 001160 411 VNRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG- 487 (1134)
Q Consensus 411 V~~i~~spdg--~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~- 487 (1134)
|..+.|||.. .+-++........+|++.....-..-..+.+|...|+.+-|.|.... .+++++.|..+..||+++.
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCC
Confidence 6677888743 23344444555778998765544444567899999999999998876 8999999999999999875
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECCCC-CEEEEEeeCCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEG 565 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~ 565 (1134)
.+++.+..-...-..++|+... ..+.+.+..+.|++||.+.+.. +..+.++...|+.+.|..-- ..+.+++ .
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~ 222 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----N 222 (1081)
T ss_pred cceeeeecccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----C
Confidence 4566666556667788888764 4555667788899999998765 44677777788888886532 2344543 4
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE--eCCCeEEE---------EECCC-CeeEEEEeCCCCCC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--GDEFQIKF---------WDMDN-MNMLTTVDADGGLP 633 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~ 633 (1134)
|++|..||..............+.+|..-++.|-|.-.+.- -.+..+.+ |+..+ .+++.++.+|..
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-- 300 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-- 300 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--
Confidence 88999999875433222222233356666666665433331 11223333 33332 356777777644
Q ss_pred CcceEEEccC----------CCEEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKE----------GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d----------~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|....|-.. .-.|++-+.|.++++|-+.+.
T Consensus 301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 4544444332 226899999999999998754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-06 Score=85.02 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=127.1
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001160 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI--SVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
+..++.|.++++.++..+.... .-|.. .+.++++|+|++++++.+....|..|.++.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~---------------------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKF---------------------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccc---------------------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 4456788888888887654321 11332 388999999999999999999999999987
Q ss_pred CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-----EecCCCCCeEEEEeeccCCccEE
Q 001160 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFI 514 (1134)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l 514 (1134)
..............+.-.+..|+.... .+|++..||++.|||++.-.... +-..|.+.+..+.|++.+.-++|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 654433323334455567889998888 79999999999999998643322 23458999999999987766788
Q ss_pred EEEecCCeEEEEEccCCCceeEecCCC--------CcEEEEEECCCCCEEEEEe
Q 001160 515 FSTAIDGKIKAWLYDYLGSRVDYDAPG--------NWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 515 ~s~~~d~~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~ 560 (1134)
+..-.-+.+.+.|+++......+.... ..+....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 888888999999999876544332221 2366666766666655543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=98.38 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=114.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE-
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~- 426 (1134)
.++.+.++|.++ ++|++..+....++++..... ..+.++.. .-...-+.+.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 556677788887 788888777877777765543 11122210 011122334444444444444
Q ss_pred --eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCCCeEEE
Q 001160 427 --FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYSV 503 (1134)
Q Consensus 427 --~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i 503 (1134)
+....+.+|....+... .+-||-..++.++|+||++ +|+++..|..|++-....-..+..| -||...|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667766653322 3458999999999999998 8999999999999887665555544 4799999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEec
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD 538 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 538 (1134)
+..++ ..|+++|.|+++++||+.+++.+..+.
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCcccccc
Confidence 98654 679999999999999999888775443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-06 Score=92.96 Aligned_cols=308 Identities=11% Similarity=0.065 Sum_probs=170.1
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC--cEE-----EEEEC--CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCT-----MMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
..+++++.++.+.-+|..+++.+........ ... .+.-. -++..++.++ .++.++.+|.++|+.+-+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~----~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS----EKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc----CCCEEEEEECCCCCCccc
Confidence 5677777788888888888777765543321 000 00000 1344555554 367899999999998877
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC---CcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP---ASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
...... ...+.... +..++.+..++.++.+|..+|+.+-......... ...+... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 765432 11112222 4567778889999999999999887776431100 0011111 23457778889999999
Q ss_pred ECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccc
Q 001160 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1134)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
|..+|+. .......... +.
T Consensus 221 d~~~G~~-~W~~~~~~~~----------------------------------------------------------~~-- 239 (394)
T PRK11138 221 LMEQGQL-IWQQRISQPT----------------------------------------------------------GA-- 239 (394)
T ss_pred EccCChh-hheeccccCC----------------------------------------------------------Cc--
Confidence 9988832 2211100000 00
Q ss_pred cccccCcc-ceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCc
Q 001160 740 VAEDVDKI-KSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1134)
Q Consensus 740 ~~~~~~~i-~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 818 (1134)
..+ +++++. ..++ + .+..+++++.+|.+..+|..+++
T Consensus 240 -----~~~~~~~~~~------------------~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------------- 277 (394)
T PRK11138 240 -----TEIDRLVDVD------------------TTPV----V--VGGVVYALAYNGNLVALDLRSGQ------------- 277 (394)
T ss_pred -----cchhcccccC------------------CCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------
Confidence 000 000000 0000 1 12335555666766666543221
Q ss_pred ccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcE
Q 001160 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNI 896 (1134)
Q Consensus 819 ~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~ 896 (1134)
.+|....+ ....+.. ++..+..++ +|.+..+|..+++.+....... ....+..+. + ..
T Consensus 278 ~~W~~~~~---------------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~ 337 (394)
T PRK11138 278 IVWKREYG---------------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GY 337 (394)
T ss_pred EEEeecCC---------------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CE
Confidence 12322110 0111222 344455555 8999999999998776543211 122223332 3 46
Q ss_pred EEEEeCCCcEEEEEcCCceEEEEecCcccceEE-EEEecCCCEEEEEcCCCcEEEEeC
Q 001160 897 IAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG-LAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~-l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
|++++.||.|+..|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 677899999999999999988877644333332 222 2446778889998887654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.4e-07 Score=90.48 Aligned_cols=248 Identities=16% Similarity=0.248 Sum_probs=164.9
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ccceeeEEeccc------------CCeeEEEEecCCCcEEEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHV------------GGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s 472 (1134)
..+.|+++.|...|.|||+|...|.|.++.-.... ..+-..++++|. ..|..+.|..++.+-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765432 222233455664 3578888887766556777
Q ss_pred EcCCCcEEEEECCCCe-------------------------------------ee-----EEe-cCCCCCeEEEEeeccC
Q 001160 473 CGDDKMIKVWDVVAGR-------------------------------------KQ-----YTF-EGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~-------------------------------------~~-----~~~-~~h~~~v~~i~~~~~~ 509 (1134)
.+.|++|++|.+.... .+ +.. ..|...|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8889999999875431 00 001 2466667778776543
Q ss_pred CccEEEEEecCCeEEEEEccCCCcee---EecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE-
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK- 580 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~- 580 (1134)
..+++ +.|=.|.+|+++....-. .+..+.- -|++..|+|....++.-+. ..|.|++-|++...+.
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 45554 568889999987654432 3333322 5788899996554432221 3778999999843211
Q ss_pred ---EEe------------cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCC----------CCC
Q 001160 581 ---RTY------------SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGG----------LPA 634 (1134)
Q Consensus 581 ---~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 634 (1134)
..+ .+.. ..|..+.|+++|+++++-+. -+|.+||+.. ..++.++..|.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 111 1111 15777899999999887654 5799999986 446776654421 111
Q ss_pred c---ceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 635 S---PRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 635 v---~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
| ..+.||.|.+.+.+|+..+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357889999999999998888887643
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-06 Score=82.63 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=153.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
...+||.|+..|...+|...+.+.... ....|...|+-+.=.-|.+. -+..++.|.++++.++.-+..-..+ |..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~s~~~~~--h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGDSNKFAV--HNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecCccccee--ecc
Confidence 345899999999999999987654321 22334444433322223332 4667888999999987655432222 333
Q ss_pred C--eEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 499 P--VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 499 ~--v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
. +.+++++++ +.++++.+....|..|.++...... ........-.+..|+.....+|++.. |+++.|||
T Consensus 158 ~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q----dg~~~I~D 231 (344)
T KOG4532|consen 158 NLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ----DGTCAIYD 231 (344)
T ss_pred ccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec----CCcEEEEE
Confidence 3 677777654 4899999999999999998765533 22333445568899999999999974 88999999
Q ss_pred CCCCeeEE----EecCccCcceEEEEEeCCCC--EEEEEeCCCeEEEEECCCCeeEEEEeCCCCC------CCcceEEEc
Q 001160 574 ESEGAIKR----TYSGFRKRSLGVVQFDTTRN--RFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PASPRLRFN 641 (1134)
Q Consensus 574 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s 641 (1134)
++...... .-+.++.+.++.+.|++.|. .|+..-.-+.+.+-|++++...+.+...... ..|....|+
T Consensus 232 VR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 232 VRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred ecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccccc
Confidence 98754332 23345666899999998773 4555555678999999998877666433222 335666777
Q ss_pred cCCCEEEEEeCCCcEEEEECC
Q 001160 642 KEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.++.-+.+.+.+ .+.=|++.
T Consensus 312 ~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcccccccch-hhheeecc
Confidence 766666555544 33445443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-05 Score=82.82 Aligned_cols=234 Identities=13% Similarity=0.157 Sum_probs=154.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCC-cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVG-DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
....++.+|+....++.+-.-| ...+||..+++.+.... .....-+.|| -.||+||++|.+.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4567889997666888887776 57899999998765311 0111124445 5799999999986
Q ss_pred -----eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc----------------CCCcEEEEECC
Q 001160 427 -----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG----------------DDKMIKVWDVV 485 (1134)
Q Consensus 427 -----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~----------------~d~~i~iwd~~ 485 (1134)
...|.|-|||... .++...++..|.-.-..+.+.|||+.+.++-|+ .+-++...|..
T Consensus 69 End~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred ccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3468999999983 244555777777677789999999854444443 23356677888
Q ss_pred CCeeeEE--e--cCCCCCeEEEEeeccCCccEEEEEecCCe-------EEEEEccCCCceeEec-------CCCCcEEEE
Q 001160 486 AGRKQYT--F--EGHEAPVYSVCPHHKESIQFIFSTAIDGK-------IKAWLYDYLGSRVDYD-------APGNWCTMM 547 (1134)
Q Consensus 486 ~~~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~-------~~~~~v~~~ 547 (1134)
+|+.+.. + .-|.-.|..+++..++ ..++..-..|. +-+++. ++....+. .-.+.+-++
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G--~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG--TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC--cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEE
Confidence 8887765 4 3377889999986653 44443322222 333322 22222222 224578899
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
++++++..+++.+. ..+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+
T Consensus 223 a~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 223 AADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCC-CccE
Confidence 99999999987764 4678999999999998876654 45566666665 555544 3443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-06 Score=91.06 Aligned_cols=215 Identities=10% Similarity=0.133 Sum_probs=147.0
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC--C-eeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEE
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--G-RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAW 526 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~~w 526 (1134)
-|.+.|+.+.-+.. + ++.+++.||.++.|--.. | +.+..+..|-+.|.+++.+.+ |.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEE
Confidence 47777888776554 3 799999999999998433 1 234456678888998888654 478888777 9999999
Q ss_pred EccCCCceeEecCCCCcEEEEEECCCCC--EEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEEEEeCCCCEE
Q 001160 527 LYDYLGSRVDYDAPGNWCTMMAYSADGT--RLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVVQFDTTRNRF 603 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l 603 (1134)
|+++......+....-+-.+-.+...|. -+++.+. -.++.+.++|-.... +..-+.+.+-.+|.++.+++.+..+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 9987655432222111111112222332 1222222 247789999977544 4445555454599999999999999
Q ss_pred EEEeCCCeEEEEECCC------CeeEEEE-------eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhh
Q 001160 604 LAAGDEFQIKFWDMDN------MNMLTTV-------DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 604 ~~~~~dg~i~iwd~~~------~~~~~~~-------~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1134)
++....|.|.-|.... .+....+ ..........++.|+|+|..+.+-+.|..|++++..++ ++++.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhh
Confidence 9999999999999873 1111111 11122345689999999999999999999999999999 67666
Q ss_pred hcC
Q 001160 671 LEG 673 (1134)
Q Consensus 671 ~~~ 673 (1134)
+..
T Consensus 239 iDE 241 (558)
T KOG0882|consen 239 IDE 241 (558)
T ss_pred hhc
Confidence 643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-07 Score=89.19 Aligned_cols=255 Identities=14% Similarity=0.181 Sum_probs=165.1
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccc---ccceeeccccccccccccccc--cCCcCeEEEEEcCCC
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH---KPFKVWDISAASMPLQNALLN--DAAISVNRCVWGPDG 420 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~i~~spdg 420 (1134)
.+-|++|.|...|. +|++|...|.|.++.-.....-.. ..|+..+.. ...++ .-...|..+.|..++
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E-------FDYLkSleieEKin~I~w~~~t 97 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE-------FDYLKSLEIEEKINAIEWFDDT 97 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccc-------hhhhhhccHHHHhhheeeecCC
Confidence 46899999999997 789998889999998654331100 011111100 00011 123568899998765
Q ss_pred C--EEEEEeCCCeEEEEEcCCCC-------------------cc------c--------------eeeEE-ecccCCeeE
Q 001160 421 L--MLGVAFSKHIVHLYTYNPTG-------------------EL------R--------------QHLEI-DAHVGGVND 458 (1134)
Q Consensus 421 ~--~las~~~dg~i~iwd~~~~~-------------------~~------~--------------~~~~~-~~h~~~v~~ 458 (1134)
. .++..+.|.+|++|.+.... .+ . +.+.. ..|..-|.+
T Consensus 98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence 4 56666799999999875420 00 0 00111 467778899
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
+.|..|.+ .++++ +|=.|.+|++.-... +..++.|. .-|++..|+|... ..+.-.+..|.|++-|++.
T Consensus 178 iS~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 178 ISFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhh
Confidence 99999888 56655 477899999874322 22334443 4578888988754 5667777899999999973
Q ss_pred CC-----c-ee--Ee--------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccC-----
Q 001160 531 LG-----S-RV--DY--------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRK----- 588 (1134)
Q Consensus 531 ~~-----~-~~--~~--------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~----- 588 (1134)
.. . .. .+ ..-...|..+.|+++|+++++-. -.++.+||.+. ..++.++..|..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHH
Confidence 21 1 11 11 11223678899999999999864 45699999985 456777655432
Q ss_pred ------cce---EEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 589 ------RSL---GVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 589 ------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
..| ..+.|+.|.+.+++|+.....-++-.
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 23778888888888887776666643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=97.35 Aligned_cols=160 Identities=14% Similarity=0.249 Sum_probs=112.4
Q ss_pred EEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001160 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
..+..++++++++.+.++....++++..... ..++|+. ... ...-+++.|..+...+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~---------~~v----~~~~~ai~~~~~~~sv 122 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDV---------SCV----PKRPTAISFIREDTSV 122 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeE---------eec----ccCcceeeeeeccceE
Confidence 4456677888777777777766666543211 0111111 011 2333445555555555
Q ss_pred EEEe----CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEE
Q 001160 856 MSAS----GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGL 930 (1134)
Q Consensus 856 a~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l 930 (1134)
.++. ...+.+|....+.+ ..+.||-+.++.++|+| |+++|+++..|..|+|-.+..--.+..+ -||..-|..+
T Consensus 123 ~v~dkagD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred EEEeecCCceeeeeecccccCc-chhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 5543 35677777776444 45567999999999999 8899999999999999988776666665 4799999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+.-++ ..|+|+|.|++|++||+.+|+.+..
T Consensus 201 sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 201 SLTDN-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred eeccC-ceeeecCCCCcEEEEecccCCcccc
Confidence 98755 5689999999999999999997643
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-06 Score=88.90 Aligned_cols=225 Identities=15% Similarity=0.136 Sum_probs=137.2
Q ss_pred CCeEEEEECCCCeEEEEecCC--CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 860 GGKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
+|+|..||..+++.+....-. .....+..+ + ++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccc
Confidence 588999999999999887631 122222233 2 345666678999999999999999888764 222211122 2345
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-CCeEEEEeC-CCcceeccCCCCC
Q 001160 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISVYDS-KLECSRSWSPKDA 1015 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~v~vwd~-~~~~~~~~~~~~~ 1015 (1134)
.++.++.|+.++.+|..+|+.+............ .........++..++++. ++.|..+|+ +++.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 5666667889999999999865442121111110 111222333377777754 899999998 6776655544221
Q ss_pred C-CC------CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE
Q 001160 1016 L-PA------PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG 1088 (1134)
Q Consensus 1016 h-~~------~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~ 1088 (1134)
. .. .+.+-....++ .++.++.++.+.-+|+.+|+.+-+.... .... .... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~------------~~~~-~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPIS------------GIYS-LPSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-------------ECE-CEEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCC------------CccC-Ccee-eCCEEEEE
Confidence 1 11 12222333345 6777777886444499999866433211 0111 1223 45778877
Q ss_pred eCCCcEEEEecCCCccccC
Q 001160 1089 MSDGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1089 ~~Dg~v~vW~~~~~~~~~~ 1107 (1134)
+.++.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998885
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-05 Score=91.25 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=113.8
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC--CCeE-----EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--APVY-----SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG 541 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 541 (1134)
.++.++.++.+.-+|..+|+.+....-.. .... .+.-.+.-++..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 57777888999999999999876654221 0000 0000111123577788899999999999998888766543
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
....+.... + ..++.+. .++.++.+|..+|+.+-.+..... .+ .+... .+..++.++.+|.+..+|
T Consensus 151 ~~~ssP~v~-~-~~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 151 EALSRPVVS-D-GLVLVHT----SNGMLQALNESDGAVKWTVNLDVP-SLTLRGESAPAT--AFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ceecCCEEE-C-CEEEEEC----CCCEEEEEEccCCCEeeeecCCCC-cccccCCCCCEE--ECCEEEEEcCCCEEEEEE
Confidence 322222221 3 3444443 367899999999998877764321 10 11111 134577778899999999
Q ss_pred CCCCeeEEEEeCCCCC--CC---cceEEEcc--CCCEEEEEeCCCcEEEEECCCc
Q 001160 617 MDNMNMLTTVDADGGL--PA---SPRLRFNK--EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~~~~~~~~~~--~~---v~~~~~s~--d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+|+.+......... .. ...+.-+| .+..++.++.+|.+..+|..+|
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 9999876554321100 00 01111122 3456777778899999998877
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-06 Score=84.31 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=72.3
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE-EEecCcccceEEEEEec-CCCE
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSP-TLNA 938 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~-~~l~~h~~~i~~l~~s~-d~~~ 938 (1134)
+..+.|+++..+....-......|++++-+|...+++++|+.||.+.+||.+..... ..+..|..+|+.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345556555433222211123349999999977788999999999999999887443 34789999999999999 5789
Q ss_pred EEEEcCCCcEEEEeCCC
Q 001160 939 LVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~ 955 (1134)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999886
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0025 Score=74.28 Aligned_cols=283 Identities=11% Similarity=0.115 Sum_probs=139.3
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccc--cCCCCCCCCceEEEEeccC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND--INESKPTEESAACIALSKN 851 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~h~~~~i~~~~~s~d 851 (1134)
.|.-..+-.|..+|+++.+||.+.-+.+.. .+|..-... .-| ..++.--.|+..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~--------------------~tg~lsd~Kk~~lG----t~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDI--------------------NTGQLSDRKKVTLG----TQPISLRTFSSK 640 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEc--------------------ccceEccccccccC----CCCcEEEEEeeC
Confidence 344455556688899999999988776532 222211111 111 334444455443
Q ss_pred C-CEEEEEeCCeEEEEECCCCeEEEEecCCCCceE-EEEEcCC-CCcEEEEEeCCCcEEEEEcCCce--EEEEecCcccc
Q 001160 852 D-SYVMSASGGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQ-DNNIIAIGMEDSSVQIYNVRVDE--VKTKLKGHQNR 926 (1134)
Q Consensus 852 g-~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~-~~~~lasg~~dg~i~iwd~~~~~--~~~~l~~h~~~ 926 (1134)
+ ..+.+.+|.-..+|.-. ++...+-- .-..+. .+.|+.+ .+..|+++ ..+.+++.-++.-+ .++++.-| ..
T Consensus 641 ~~t~vfa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~-~~ 716 (1096)
T KOG1897|consen 641 SRTAVFALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLG-ES 716 (1096)
T ss_pred CceEEEEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCC-CC
Confidence 3 34444445544444432 23222211 001111 1223221 22344444 33456665554321 12223322 23
Q ss_pred eEEEEEecCCCEEEEEcC-----------C---CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC-CcEEEE
Q 001160 927 ITGLAFSPTLNALVSSGA-----------D---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV 991 (1134)
Q Consensus 927 i~~l~~s~d~~~l~s~~~-----------D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~ 991 (1134)
...+++.+....+++.+. . ..++++|-.+.+.+........+. ...+..+.|..| +.++++
T Consensus 717 prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~----~~Si~s~~~~~d~~t~~vV 792 (1096)
T KOG1897|consen 717 PRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET----ALSIISCKFTDDPNTYYVV 792 (1096)
T ss_pred hhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce----eeeeeeeeecCCCceEEEE
Confidence 445565553333333221 1 236777777755433221111111 134566679988 778877
Q ss_pred EE-----------CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcc
Q 001160 992 VH-----------ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059 (1134)
Q Consensus 992 ~~-----------d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~ 1059 (1134)
|. .|.|.||.. +.+.+...... ...+.+.++.. -+|++||. -...|++|+..+++.++.-..+
T Consensus 793 GT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~- 867 (1096)
T KOG1897|consen 793 GTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNI- 867 (1096)
T ss_pred EEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcc-
Confidence 52 367888888 43444433221 11344444442 46777765 4668999999988555332211
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
...+. ++... ..|+.++.|..-+++.+-.....|
T Consensus 868 -------~~~~~--aL~l~-v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 868 -------SNPII--ALDLQ-VKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -------cCCeE--EEEEE-ecCcEEEEeeccceEEEEEEeccC
Confidence 11123 33322 267899999988888776665555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-06 Score=95.14 Aligned_cols=112 Identities=13% Similarity=0.369 Sum_probs=85.0
Q ss_pred CCeeEEEEecCCCeEEEEEe----CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGT----NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..-+-..|+|... ++|+++ ..|.|.||- ++|+.-...+. .-.+++++|+|..-.
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------------------P~hatSLCWHpe~~v 73 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------------------PVHATSLCWHPEEFV 73 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc--------------------ceehhhhccChHHHH
Confidence 3445568999987 677664 357888884 45554332111 112667999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
||.|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 9999999999999988754322 3346999999999999999 89999999999999865
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-07 Score=86.51 Aligned_cols=209 Identities=13% Similarity=0.194 Sum_probs=127.0
Q ss_pred eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC
Q 001160 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS 428 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~ 428 (1134)
|+.+.|+-+- .|+++..++.+......++.+... |+-.. ...+...+..|.++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~--~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDD--GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhccc--CcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6677777664 577888888877777665544321 11100 01111123345555555555667889999999
Q ss_pred CCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEc-----CCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG-----DDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
||.+.+.+.+.- ++....... |.+ --+......+. .+.++. .-+..++|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 999999998762 211111111 211 12223333444 333332 1224556665543322211112234899
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
++-+|... +.+++|+.||.+-+||.++...+. .+..|..++..+-|+| ++..|++++. +|.+..||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888764 788999999999999999875444 5677888999999999 4577888874 78899999664
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-05 Score=73.52 Aligned_cols=143 Identities=8% Similarity=0.034 Sum_probs=93.9
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeE
Q 001160 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1134)
Q Consensus 353 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i 432 (1134)
..-+|.+++++.|+..+.+.--|..+|..... . --...|-+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~-------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A-------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------h-------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 34456677899999999999999999876543 1 112233333322 57789999999999
Q ss_pred EEEEcCCCCccceeeEEecccCCee-EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCc
Q 001160 433 HLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI 511 (1134)
Q Consensus 433 ~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 511 (1134)
++.+.++|+.......+. .|. .....+++. ++..|+.|++.+..|..+..+++..+-..+...+-++.+. +
T Consensus 76 Yfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~- 147 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILE----TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D- 147 (354)
T ss_pred EEEEecchhheeeeeehh----hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-
Confidence 999999997766433322 222 234456777 8999999999999999999998886633322222233332 2
Q ss_pred cEEEEEecCCeEE
Q 001160 512 QFIFSTAIDGKIK 524 (1134)
Q Consensus 512 ~~l~s~~~d~~i~ 524 (1134)
..|..+...|.+.
T Consensus 148 ~sly~a~t~G~vl 160 (354)
T KOG4649|consen 148 GSLYAAITAGAVL 160 (354)
T ss_pred ceEEEEeccceEE
Confidence 3344444445443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-05 Score=79.54 Aligned_cols=218 Identities=19% Similarity=0.204 Sum_probs=141.5
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe-cCCCcEEEEEEcCCCcEEEEECCCCeee
Q 001160 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQ 490 (1134)
Q Consensus 413 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s-~d~~~~~l~sg~~d~~i~iwd~~~~~~~ 490 (1134)
+++|.+ ++.++++--..+.|..|+..++... .+.. . ....+++. +++. ++.+..+ .+.++|+.+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~----~~~~-~-~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE----VIDL-P-GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EEES-S-SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE----EEec-C-CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 577888 7777777777999999999886432 1221 2 26777887 6654 4445444 4556699988654
Q ss_pred EEecC-----CCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 491 YTFEG-----HEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 491 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
..... .....+.+++.++ |.+.++.... |.|..++.. .........-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence 43322 3456778888665 4666665543 456666665 33333333345678999999999887
Q ss_pred EEeeCCCCCCcEEEEeCCCC-e-e--EEEe---cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC
Q 001160 558 SCGTSKEGESHLVEWNESEG-A-I--KRTY---SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~-~--~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
.+.. ..+.|..+++... . . .+.+ .... +....+++..+|+..++....+.|.+++.+ |+.+..+....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 6543 4667888888532 2 1 1222 2221 146789999999988887789999999988 88888888763
Q ss_pred CCCCcceEEEc-cCCCEEEEEe
Q 001160 631 GLPASPRLRFN-KEGSLLAVTT 651 (1134)
Q Consensus 631 ~~~~v~~~~~s-~d~~~l~~~~ 651 (1134)
..+++++|. ++.+.|++.+
T Consensus 225 --~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SSEEEEEEESTTSSEEEEEE
T ss_pred --CCEEEEEEECCCCCEEEEEe
Confidence 368999994 6766666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-05 Score=83.67 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=150.4
Q ss_pred ccccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 403 LLNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
++.+|...|..++|||... ++..++.+..|+|.|+.+...+. .+..| ..+++++|.-|..+ +|+.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5778999999999999877 78889999999999999976555 45556 78999999999877 8999999999999
Q ss_pred EECCCCee-eEEecC--CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEccCCC--ceeEecC-CCCcEEEEEECC
Q 001160 482 WDVVAGRK-QYTFEG--HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLG--SRVDYDA-PGNWCTMMAYSA 551 (1134)
Q Consensus 482 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~-~~~~v~~~~~s~ 551 (1134)
+|++..+- +..+.+ ...+|..++..+.. .|.+++..+.+ +..|.+.... ....... ..+...++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986442 223322 22344444322211 12344444433 3445543322 2222222 244556677777
Q ss_pred CCCEEEEEeeCCCCCCcEEE----EeCCCCeeEEEec-Cc---cCcc---eEEEEEeCCCCEEEE-EeCCCeEEEEECCC
Q 001160 552 DGTRLFSCGTSKEGESHLVE----WNESEGAIKRTYS-GF---RKRS---LGVVQFDTTRNRFLA-AGDEFQIKFWDMDN 619 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~----wd~~~~~~~~~~~-~~---~~~~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 619 (1134)
..+.++.......+..+++. .|-.+|.++..-+ ++ .... -..+.-.++.++++. +++.+.+.+||+.+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66666655443211111111 1222333332211 11 1000 112223455566665 55778999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEcc-C-CCEEEEEeCCCcEEEEECC
Q 001160 620 MNMLTTVDADGGLPASPRLRFNK-E-GSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~-d-~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.++++... .+|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 3566666544 3 44666555 4478888754
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0001 Score=77.95 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=143.1
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc-CCCCEEEEEeCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG-PDGLMLGVAFSK 429 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s-pdg~~las~~~d 429 (1134)
++.|.+....|+++....+.|..|+..+++.... .......+++. +++. |+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~~~G~~~~~~~g~-l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPGPNGMAFDRPDGR-LYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSSEEEEEEECTTSE-EEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCCCceEEEEccCCE-EEEEEcC
Confidence 6789984445888887889999999988764321 11116677777 6654 4555555
Q ss_pred CeEEEEEcCCCCccceeeEEe--c-ccCCeeEEEEecCCCcEEEEEEcCC--------CcEEEEECCCCeeeEEecCCCC
Q 001160 430 HIVHLYTYNPTGELRQHLEID--A-HVGGVNDIAFAHPNKQLCIVTCGDD--------KMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~--~-h~~~v~~l~~s~d~~~~~l~sg~~d--------~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
+ +.++|..+++... ..... . .....+.+++.++|. +.++.... +.|..++.. ++..... ..-.
T Consensus 61 ~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLG 134 (246)
T ss_dssp C-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEES
T ss_pred c-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEe-cCcc
Confidence 5 5556988875432 22322 1 345688999999998 56655433 557778866 5544333 3355
Q ss_pred CeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCc----ee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 499 PVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGS----RV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~----~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
..+.++|++++ +.| ++-+..+.|..++++.... .. .+....+..-.+++..+|+..++.. ..+.|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEE
Confidence 67899998865 554 5677889999999875443 11 1222223578999999998877754 367799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEE
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAA 606 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 606 (1134)
+++.. |+.+..+..... .+++++|. ++.+.|+..
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 99987 888888887644 78889994 666666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-06 Score=87.36 Aligned_cols=300 Identities=14% Similarity=0.167 Sum_probs=190.3
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
|...|+.+..+ -.+++++++-||.++.|.-.. .+|......+.. | ...|.+++.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------------------isGvEfVKhFra--H-L~~I~sl~~S~ 63 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVKHFRA--H-LGVILSLAVSY 63 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------------------ccceeehhhhHH--H-HHHHHhhhccc
Confidence 55555555444 456689999999999995311 122222222333 6 78889999999
Q ss_pred CCCEEEEEe--CCeEEEEECCCCeEEEEecCCCC-ceEEEEEcCCCC-cEEEE-EeCCCcEEEEEcCCce--EEEEecCc
Q 001160 851 NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDN-NIIAI-GMEDSSVQIYNVRVDE--VKTKLKGH 923 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~-~~las-g~~dg~i~iwd~~~~~--~~~~l~~h 923 (1134)
||.++.+++ |..++++|+.+...+..++-..- .-.++..++.+. ..||+ .-.+|.+.|+|-.... ....-.-|
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH 143 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH 143 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence 999999976 78899999987655433332111 112223333111 13333 3467899999966443 33334569
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-cccccceeee------cCCCCCCCCcCceEEEECCCCcEEEE-EECC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQ------APAGRQSPLVGETKVQFHNDQTHLLV-VHES 995 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~------~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~ 995 (1134)
..+|..+.+++-+..++|....|.|.-|..+. .+.......- .+.+.........++.|+|+|..+.+ +.|.
T Consensus 144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 99999999999999999999999999999873 2211111111 11122233356789999999999999 7899
Q ss_pred eEEEEeC-CCcceeccCCC-----------------------------CCC-CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 996 QISVYDS-KLECSRSWSPK-----------------------------DAL-PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 996 ~v~vwd~-~~~~~~~~~~~-----------------------------~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
.|++++. .++.++.+... ..| ...-+.+.|...|++|+.|+.=| |+|.
T Consensus 224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi 302 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI 302 (558)
T ss_pred EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence 9999998 44444332211 001 23456788999999999987665 9999
Q ss_pred eCCCcceeeecCCcccc----------------cccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEE
Q 001160 1045 DAETLRFRCRIGPSAYI----------------PTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVV 1097 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1097 (1134)
++.+++..+.+...... +......+..++ +-+.+ |+.+++++=.-+.++++
T Consensus 303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence 99999887765532211 000001111222 22444 77778888788888887
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.1e-05 Score=80.73 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=137.1
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceee
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~ 447 (1134)
+|+|..||..+|+.+.+..+ ..-.....+. ..+++.++++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 68899999999987654211 0001111111 3346777888889999999999998765432
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCC---CeEEEEeeccCCccEEEEEecCCeE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEA---PVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
.. ...+....... +. .++.++.++.|+.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~~-~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVVD-GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEEE-TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeeec-cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 21 22222222333 33 4566667889999999999998874 32211 1111222222 3788888889999
Q ss_pred EEEEccCCCceeEecCCCCc----------EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE
Q 001160 524 KAWLYDYLGSRVDYDAPGNW----------CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV 593 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~ 593 (1134)
..+|+++++.+......... +..-....++ .++.+.. ++.+..+|..+++.+.... .. .+..
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~----~g~~~~~d~~tg~~~w~~~--~~-~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG----DGRVVAVDLATGEKLWSKP--IS-GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC----TSSEEEEETTTTEEEEEEC--SS--ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC----CCeEEEEECCCCCEEEEec--CC-CccC
Confidence 99999999988776654322 1222233344 5555542 4434444999999664333 22 2222
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001160 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
....++..+++++.++.|.+||+.+++.+-
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 145677888888899999999999998764
|
... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-05 Score=84.89 Aligned_cols=266 Identities=15% Similarity=0.212 Sum_probs=150.6
Q ss_pred ecCCCeEEEEE--------eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 355 HPQQQTILLVG--------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 355 spdg~~llasg--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 68888666522 224678999999876543 12225678999999999999998
Q ss_pred eCCCeEEEEEcCCCCccceeeEEec-------c---------cCCeeEEEEecCCCcEEEEEEc-CCCc-----------
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDA-------H---------VGGVNDIAFAHPNKQLCIVTCG-DDKM----------- 478 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~sg~-~d~~----------- 478 (1134)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+... ++..
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 4 56799999877644322 1112 0 122367889999995 44322 1222
Q ss_pred ------------------------EEEEECCCCeeeE-Ee----cCCCCCeEEEEeeccCCccEEEEE--ecCC---eEE
Q 001160 479 ------------------------IKVWDVVAGRKQY-TF----EGHEAPVYSVCPHHKESIQFIFST--AIDG---KIK 524 (1134)
Q Consensus 479 ------------------------i~iwd~~~~~~~~-~~----~~h~~~v~~i~~~~~~~~~~l~s~--~~d~---~i~ 524 (1134)
+.|+|+.+++... .. ..-...+..+.|.+++ ..|+.. ..+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 2345554444321 11 1223446666776654 423332 2222 356
Q ss_pred EEEccCCCceeEecC-CCCcE---EEEEEC-CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-EEEEEeC
Q 001160 525 AWLYDYLGSRVDYDA-PGNWC---TMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-GVVQFDT 598 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~-~~~~v---~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-~~~~~~~ 598 (1134)
++|..++........ ...+| ....|. +++..++..+. +++-..|++++...+... .+....- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGDW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCce-eecccceEcC
Confidence 667766655443322 22222 245554 88888877765 667778888898877744 3433322 45 4577889
Q ss_pred CCCEEEE-EeC----CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 599 TRNRFLA-AGD----EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 599 ~~~~l~~-~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+++.++. +.. ...++.-++..+..+..+...... ...+.|||+|++++....
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 8877664 443 335666667623444555544332 158999999998876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=92.58 Aligned_cols=270 Identities=8% Similarity=0.085 Sum_probs=159.9
Q ss_pred ccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 772 ASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
...|.++.|-.++..++.+...|.|.+-|..+.....-| . - ...|.+++||||
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-----------------------~---v-d~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-----------------------N---V-DNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-----------------------e---c-cCceEEEeecCC
Confidence 478999999999999999999999988754332111100 0 1 678999999999
Q ss_pred CCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-----EE------EEe
Q 001160 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-----VK------TKL 920 (1134)
Q Consensus 852 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~-----~~------~~l 920 (1134)
++.++....+...++...+..++....-+. .-.+ .+++ +.+++...=.-+.-..|+ .+ ...
T Consensus 121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~-v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKF-VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-cccc-ceecccccceeeecchhhhcccccccccccccch
Confidence 999999985444444444444443322111 0011 1122 222222211111111111 00 101
Q ss_pred cCcccceEEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE---
Q 001160 921 KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--- 992 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--- 992 (1134)
.-| +.=++|.|--||.++|+. .....|+|||-+ |..... ..+.. ..-.+++|-|.|.++++-
T Consensus 193 ~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~-----~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 193 EQD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVE-----GLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred hhc-cCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCccc-----ccccceeecCCCCeEeeeeec
Confidence 112 223579999999998873 233789999988 332111 11110 223689999999999982
Q ss_pred -ECCeEEEEeCCCcceeccCCCCCC-CCCeEEEEEccCCCEEEE---EecCCcEEEEeCCCccee--eecCCcccccccc
Q 001160 993 -HESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYA---GFCDGAIGVFDAETLRFR--CRIGPSAYIPTYA 1065 (1134)
Q Consensus 993 -~d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~---~~~dg~I~vwd~~~~~~~--~~~~~~~~~~~~~ 1065 (1134)
+++.|.+|..+|-....+...... ..+|..++|+.++..||+ ......|++|-..+..-- +.+. .+..
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~- 337 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK- 337 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-
Confidence 567899999877665544433222 344999999999999988 444455999998875332 1111 1111
Q ss_pred cCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1066 VSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
. -+.|+|.....|..-..+|...+.+
T Consensus 338 ----~---~~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 338 ----A---LLMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred ----c---cccccCCCceeEEEEecCCcEEEEE
Confidence 1 1777776666666665666555544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-07 Score=92.08 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=124.3
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCe
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~ 431 (1134)
++||-+-.-+-++.+.+-.|-+-|+++|.... + ..++.|.++.|...+.++..|..+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 37775433233444557789999999886432 1 26678999999999999999999999
Q ss_pred EEEEEcCCCCc--cceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCCCCeEEEEe
Q 001160 432 VHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 432 i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i~~ 505 (1134)
|..+|+..+.. ......+ .|...|+++.... +++ +|++.+.+|.|++||++.-++ +..+.||...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986521 1111122 5899999998877 555 788899999999999987666 8889999776665555
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
+-++....+++++.|...|+|.++.+....+++..
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55555578999999999999999988777665544
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00047 Score=67.39 Aligned_cols=137 Identities=11% Similarity=-0.022 Sum_probs=90.8
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
.+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777776665554332 2233322222 4667887775 66799999999988887766543 22
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
......+++..+.+|+.|+..+..|..+...+...+..+.. ..+-+..+ ++.+. .+...|.+.-
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly-~a~t~G~vla 161 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLY-AAITAGAVLA 161 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEE-EEeccceEEE
Confidence 23557888999999999999999999999998887765442 23344555 44444 3444444433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-07 Score=62.81 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=37.2
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
|+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.8e-05 Score=78.94 Aligned_cols=284 Identities=10% Similarity=0.102 Sum_probs=160.3
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----------CCCeEEEEECCCCeeEEEEeCCCC-----
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFWDMDNMNMLTTVDADGG----- 631 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~----- 631 (1134)
++++++|..+++.+-.+..... ..+..+|+++.+++++ ..-.|.+||..+-.+...+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 4599999999998877765433 3366899999988754 234699999999988887765532
Q ss_pred CCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCC
Q 001160 632 LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1134)
......++++.||+++++... ...|.|.|+..+ +.+.++.-..+. .
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~----------------------------~--- 141 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCW----------------------------L--- 141 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEE----------------------------E---
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEE----------------------------E---
Confidence 123456788899998776533 567888888776 333333221100 0
Q ss_pred CCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee-EeecCCcccccceEEEEEecCCcceE
Q 001160 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK-ALRLPDSIAASKVVRLIYTNSGLSLL 788 (1134)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~ 788 (1134)
.-...+..+...+.||++....+.......... .+..+. ...-...-+++..+..++
T Consensus 142 --------------------iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~--~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 142 --------------------IYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD--DDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp --------------------EEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT--TS-B-S--EEETTTTEEE
T ss_pred --------------------EEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC--CcccccccceECCCCeEE
Confidence 011223445666777777777776433222111 111111 122223344455554455
Q ss_pred EeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe----CC---
Q 001160 789 ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG--- 861 (1134)
Q Consensus 789 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s----dg--- 861 (1134)
-.+-+|.|+--++......+ ..-|.+.+......... .+.-.-+++++....|.+-- +|
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~Wr-----PGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGWR-----PGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTEE-----E-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred EEecCCEEEEEeccCCcccc---------cCcccccCccccccCcC-----CcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 56667777766654322111 11222211110000000 22233467776555444321 22
Q ss_pred ----eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCCceEEEEecC
Q 001160 862 ----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKG 922 (1134)
Q Consensus 862 ----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~~~~~~~l~~ 922 (1134)
.|.++|+.+++.+.++.. ..++.+|+++.++..+|.+.+ .++.+.+||..+|+.+.++.+
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 399999999999999874 346889999996666776554 578999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-05 Score=88.06 Aligned_cols=279 Identities=11% Similarity=0.179 Sum_probs=158.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.|.++.|.-++..+ +.+..+|.|.+-|..+..... ...-.+.|.+++||||++.++.
T Consensus 68 d~~i~s~~fl~d~~~i-~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSI-CVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccceE-EEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 3589999999999854 456778999998887765432 2345678999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEec---ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
.+..+++.+-+.. -..+... .+.. ..+..-.+-|-....+ +-|+ .|....-+...... +... .-.+.=+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQI-EQDDHKT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccch-hhccCCc
Confidence 9988887765432 1111100 0100 0111222333222211 1111 11111111000000 0000 0112234
Q ss_pred EEEeeccCCccEEEEE-----ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 502 SVCPHHKESIQFIFST-----AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~-----~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+|.| .+||+++++. ...+.|++||-+ +.....-....+.-.+++|-|.|..+++.....+ ++.|.++..+.
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 5666 5677888883 233789999876 2222222223334568999999999998775443 55788887432
Q ss_pred ---CeeEEEecCccCcceEEEEEeCCCCEEEE---EeCCCeEEEEECCCCeeE--EEEeCCCCCCCcceEEEccCC-CEE
Q 001160 577 ---GAIKRTYSGFRKRSLGVVQFDTTRNRFLA---AGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEG-SLL 647 (1134)
Q Consensus 577 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~-~~l 647 (1134)
|+....+..... .+..++|+.++..|++ ......|++|-..+.... +.+..... .-+.|+|.. ..+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence 222222333332 4889999999999887 455666999999876533 33333322 227888832 334
Q ss_pred EEEeCCCcEEEEEC
Q 001160 648 AVTTSDNGIKILAN 661 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1134)
..-..+|...+++.
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446666666554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.6e-06 Score=94.77 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666776 888999999998888877666656776666 6789999999999999999999999999999999977
Q ss_pred EEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC--cEEEEEECCeEE
Q 001160 930 LAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ--THLLVVHESQIS 998 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg--~~l~~~~d~~v~ 998 (1134)
+.. .|+.|+|||. |.-|+|||+..-+.+.. +..+.+ ..-+.|.|.= +..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccC-------chhhhhcccccceEEEEeccccee
Confidence 655 6889999983 56689999988664432 222222 2446677743 334446788888
Q ss_pred EEeC----CC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 999 VYDS----KL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 999 vwd~----~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
+-|. +. ..+..+.+ ....+.++++|++|+.+|.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p---~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNP---NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEcc---CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 8884 11 11122222 145599999999999999999999999998
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0012 Score=70.64 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=147.2
Q ss_pred ccccceEEEEecCCCC------eeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccc
Q 001160 333 DDLTKTVVRTLNQGSN------VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~------V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
|..++..+..|.+... .+.=+|.+||++||+++..|| .+.+-|+.+++..+ |
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------L 75 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------L 75 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------C
Confidence 4456666666653322 223478999998999888777 55566777776553 2
Q ss_pred ccCC-cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe--cCCCcEEEEEEc-------
Q 001160 405 NDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA--HPNKQLCIVTCG------- 474 (1134)
Q Consensus 405 ~~h~-~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~sg~------- 474 (1134)
.... .......++|+++.++-......++--|+++.+... .+......+-...|. .|+. .++..-
T Consensus 76 Tdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 76 TDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWK 150 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG--
T ss_pred ccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhcc
Confidence 2222 223356778999988777667789999999876432 333345555456664 3454 333221
Q ss_pred ---------------CCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCe-EEEEEccCCCcee
Q 001160 475 ---------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGK-IKAWLYDYLGSRV 535 (1134)
Q Consensus 475 ---------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~-i~~wd~~~~~~~~ 535 (1134)
..+.|.--|+.+|+....+. -...+..+.|+|..+ ..|.-|- .+.. -|+|-+++.....
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~ 228 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNV 228 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcc
Confidence 12345666778877544443 566788889998764 3333332 2221 3667665433322
Q ss_pred -EecC--CCCcEEEEEECCCCCEEEEEee-CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC--
Q 001160 536 -DYDA--PGNWCTMMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-- 609 (1134)
Q Consensus 536 -~~~~--~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 609 (1134)
.+.. ....+.-=-|.|||..+...+. .+..+..|.-+|+.+++........ ....+..++||+.++-=|.|
T Consensus 229 ~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 229 KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE----
T ss_pred eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCC
Confidence 2221 2224455568999998876543 3333556888888887654332221 23345567898888763332
Q ss_pred --------------CeEEEEECCCCeeEEEEeCC--------CCCCCcceEEEccCCCEEEEEeC-CCcEEEEEC
Q 001160 610 --------------FQIKFWDMDNMNMLTTVDAD--------GGLPASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1134)
Q Consensus 610 --------------g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~ 661 (1134)
--|+++++..+......... .....=....|+|||++|+..++ .|...||-+
T Consensus 306 ~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 306 VDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 25677888876654322210 00112256899999998876655 666666643
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-05 Score=85.78 Aligned_cols=232 Identities=12% Similarity=0.036 Sum_probs=140.8
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCeEEEEecC------C---------CCceE-----EEEEcCCCCcEEEE-EeCCCcE
Q 001160 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------P---------PPAAT-----FLAFHPQDNNIIAI-GMEDSSV 906 (1134)
Q Consensus 850 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~---------~~~i~-----~l~~s~~~~~~las-g~~dg~i 906 (1134)
.||+|+..-. +..|...+++..++-+.+.- | +..|. .+-++| ||+.+.. .-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 3899999887 57787788877665444321 1 11121 233455 5655432 2344678
Q ss_pred EEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC----CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE
Q 001160 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
.+.|.++.+....+.-- +....++++|||+++.+.+.+ .++..-+..... .+....- -..-++
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----~~vvfni-------~~iea~ 284 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----WVVVFNI-------ARIEEA 284 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----eEEEEch-------HHHHHh
Confidence 88888887777665532 244678899999999887632 223222222111 0000000 001134
Q ss_pred CCCCcEEEEEECCeEEEEeCCC-----cceeccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceee--e
Q 001160 983 HNDQTHLLVVHESQISVYDSKL-----ECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRC--R 1054 (1134)
Q Consensus 983 spdg~~l~~~~d~~v~vwd~~~-----~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~--~ 1054 (1134)
.++|++..+ .+++|.+.|... ..+..+.+. ......+.+||||+++++++ .+.+|.|.|+.+.+... .
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 567887666 467899999943 333333222 56788999999999877655 48899999999865311 0
Q ss_pred cCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1055 IGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
+.....+ .........|+..+|++ +|+.+.|---|..|..|++.+
T Consensus 361 ~~~~~~v-vaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAV-VAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceE-EEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1000000 00011236788999998 789999999999999999876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-05 Score=89.05 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=134.1
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc-eEEEEEecCCCEEEEEcCCCc-----EEEEeCCCccccc-
Q 001160 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLK- 960 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~- 960 (1134)
+|++ ++..+|.|+.+|.|.+++ .+-+.+..++++... |+.+..-.+..+|++.+.|+. ++||+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999999987 345556778888777 555554445579999987764 8999998754333
Q ss_pred ceee--ecCCCCCCC--CcCceEEEECCCCcEEEEE-ECCeEEEEeC-----CCcceeccCCCCCCCCCeEEEEEccCCC
Q 001160 961 SRFI--QAPAGRQSP--LVGETKVQFHNDQTHLLVV-HESQISVYDS-----KLECSRSWSPKDALPAPISSAIYSCDGL 1030 (1134)
Q Consensus 961 ~~~~--~~~~~~~~~--~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-----~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 1030 (1134)
..++ .....+..+ ..++..++.|.+-+.+|+| .+|.|..+.- .+...... +.-..+|+.+++-.|++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS---HRGKEPITGLALRSDGK 184 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee---ccCCCCceeeEEecCCc
Confidence 2333 111111111 2578899999998888887 6788988865 12222211 22278999999999998
Q ss_pred EEEEEecCCcEEEEeCCCcce-eeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCC
Q 001160 1031 LVYAGFCDGAIGVFDAETLRF-RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGT 1109 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1109 (1134)
.++.+.+-..|.+|.+....+ ++.+.. +....-|.++++..+ .+++++. ..|.+|+....++-|+.+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~----------~G~~lnCss~~~~t~-qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDN----------NGISLNCSSFSDGTY-QFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeecc----------CCccceeeecCCCCc-cEEEecC-ceEEEEcCCCcceeeeec
Confidence 744445567899999984331 222331 224445777776443 3555543 468999987666666655
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=83.47 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=76.6
Q ss_pred EeccCCCEEEEEeCCeEEEEECCC-----CeEEEEecCCCCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCCceE----
Q 001160 847 ALSKNDSYVMSASGGKVSLFNMMT-----FKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRVDEV---- 916 (1134)
Q Consensus 847 ~~s~dg~~la~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~~~~---- 916 (1134)
++.+||++... .+++|.+.|..+ .+.+..+. -......+++|| ||++++++ ..+.+|.|.|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34457887665 467899999988 35555555 345678899999 77766554 5689999999987542
Q ss_pred --------EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 917 --------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 917 --------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+....--. .-...+|.++|....|..-|..|..||+++
T Consensus 360 ~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333222 235678999999888999999999999986
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00022 Score=74.78 Aligned_cols=205 Identities=18% Similarity=0.177 Sum_probs=123.9
Q ss_pred EEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEEE-
Q 001160 845 CIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTK- 919 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~~- 919 (1134)
.+++|.||+++.+.. .-.|.|.|+...+.+..+... .+..+--+ +++-+.+-|.||++.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEee
Confidence 357888888888775 467999999999998887632 23333223 33457788899999998887 4554322
Q ss_pred ---ecCcccce-EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCC---CC-CCcCceEEEECCCCcEEEE
Q 001160 920 ---LKGHQNRI-TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGR---QS-PLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 920 ---l~~h~~~i-~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~~fspdg~~l~~ 991 (1134)
|..-.+++ ..-+++.++..++-.+.+|.|+--|+......-.......... .. ..++-..+++++..++|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 2334555566666677888888888776553222111111000 00 0133456888877766665
Q ss_pred E----ECC-------eEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCcceeeecCC
Q 001160 992 V----HES-------QISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAG-FCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 992 ~----~d~-------~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~-~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
- .++ .|.+||+ +.+.+..+.. ..++.+|++|.|.+ +|++. ..++.+.+||..+|+++.++..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 2 221 3778888 6667766654 34688999999887 55444 4578999999999999988863
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=87.28 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=122.3
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC----Cce
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL----GSR 534 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~ 534 (1134)
++|+-+-.... ++.+.+..|-+-|+++|... .|. ..+.|.++.|.... .+++.|+..|.|..+|++.. ...
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 36654433213 55566778889999888653 343 66788888887655 79999999999999999876 333
Q ss_pred eEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcc-eEEEEEeCCCCEEEEEeCC
Q 001160 535 VDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRS-LGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d 609 (1134)
...-.|...|+++..-. ++.+|++.+. ++.|.+||.+.-+. +.++.||.... -.-+-+.+....++++|.|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 44455788888888777 7778877754 88899999997666 89999986522 1123456667789999999
Q ss_pred CeEEEEECCCCeeEEEEeCCC
Q 001160 610 FQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~ 630 (1134)
...+||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999999887553
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-06 Score=85.41 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCccc-ccccchhhHHHHHH
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKHFEDQVQAGEWDEVERYLCGFTK-VEDNRYSMKIFFEI 76 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~l~~-~~~~~~~~~~~~~i 76 (1134)
.-+-|+|..||..+||.+||..|-++|.+. .++...++++++|+...|+.-...-.. +. +....+.|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 346799999999999999999999999886 237788999999999988776643211 11 1222478999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCcc
Q 001160 77 RKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFR 125 (1134)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 125 (1134)
..|.|+||+..+++.+|+.+.++.+.|...-+.++++....++..+...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999887889999999998876554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00017 Score=80.57 Aligned_cols=289 Identities=12% Similarity=0.086 Sum_probs=167.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...|.--+++..++ +++.|+..|.+.+|+-.+++..... ..+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhh
Confidence 344566666777777 6888999999999998887654321 223455677788999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeE--E-ecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----eeEEecCCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLE--I-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHE 497 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~--~-~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~ 497 (1134)
.|+..|.|.++-++.+........ + ..|...|++++|++|+. .+++|...|.|..-.+.+.. ..+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887543322211 1 13678999999999999 79999999999998877621 122333345
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-C-cEEEEEECCC----CCEEEEEeeCCCCCCcEEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-N-WCTMMAYSAD----GTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~-~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~ 571 (1134)
+.|-.+.... .+|+.++.-.. .+++.+.......-+... + .-...+|-|. .+-.+.|+. .-.++
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-----PG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-----PGLRL 240 (726)
T ss_pred cceEEeeccc----ceehHhhhhhh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-----CCCce
Confidence 6666665432 23333333322 234444322111111111 1 1234445443 333444443 22788
Q ss_pred EeCC-CCeeEEEecCcc------C-----------------c-----ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 572 WNES-EGAIKRTYSGFR------K-----------------R-----SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 572 wd~~-~~~~~~~~~~~~------~-----------------~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
|..+ .|..+++..-.. . . ....+.+- .+.++++-++-| |+|+|..+...
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v 318 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQV 318 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceE
Confidence 8765 355444422100 0 0 00011111 122444444444 88888877665
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
+.-.... ..|.. .+..|+-|++-..|+.+++..+.+.++.+..+
T Consensus 319 ~l~se~~---~DI~d--Vs~~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 319 YLWSEGG---HDILD--VSHCGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred EEeecCC---CceeE--EeecCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 5444322 13433 34456677777778888888887765544433
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=59.63 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=36.9
Q ss_pred CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
++++.++.+|.+.|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-06 Score=79.98 Aligned_cols=134 Identities=20% Similarity=0.214 Sum_probs=97.8
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHH
Q 001160 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQ 117 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~ 117 (1134)
...++++|++|+++.|+..+....+.-... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998764321111 1238899999999999999999999999999987664335678888888
Q ss_pred hhcccCccc--hhhhccCCCchhHHHHHHHHHHhhcccCccccccCCCCCCc-hhHHHHHHHHHHHHH
Q 001160 118 LLTLDNFRQ--NEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLSFPSFK-SSRLRTLINQSLNWQ 182 (1134)
Q Consensus 118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~Q 182 (1134)
++...+..+ ...+..+-+. ..|+.+.+.+.+.+-...- +| .+.|+.++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888776654 2333333333 6788999988887654221 23 457888888765443
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=83.61 Aligned_cols=200 Identities=16% Similarity=0.195 Sum_probs=130.4
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC-----cEEEEECCCC--
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAG-- 487 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-----~i~iwd~~~~-- 487 (1134)
+|++.+..+|.|+.+|.|.+.+-.- .....++++...|...-+.-+++. +|++-+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc----eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 4788999999999999888877432 222356667666333333444433 677666554 5899998632
Q ss_pred ----eeeE--EecC-----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---Ccee-EecCCCCcEEEEEECCC
Q 001160 488 ----RKQY--TFEG-----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRV-DYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 488 ----~~~~--~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~-~~~~~~~~v~~~~~s~~ 552 (1134)
.+++ .+.+ ...++.+++++.+- ..+|.|-.+|.|.++.-+-. .... .......+|+.+++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2331 2222 35678888887664 89999999999999853321 1122 22334569999999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
++.++.+.. ...|.+|.+....+... +..+ +..++|.+|++....+++++. ..+.+|+.....+...+.
T Consensus 183 ~~s~lFv~T----t~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVAT----TEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEe----cceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 988332222 44589999884443333 4444 448999999987765776654 469999988666555554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0004 Score=77.52 Aligned_cols=266 Identities=13% Similarity=0.163 Sum_probs=142.5
Q ss_pred CccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccccccee-eccccccc--cccccccccCC
Q 001160 332 QDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKV-WDISAASM--PLQNALLNDAA 408 (1134)
Q Consensus 332 ~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~h~ 408 (1134)
.|..+++..........+....|||+|+.++++- ++.|.+++..++...+- +..- -.+..+.. ..+..++
T Consensus 28 ~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~---- 100 (353)
T PF00930_consen 28 YDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVF---- 100 (353)
T ss_dssp EETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTS----
T ss_pred EecCCCceEECcCCccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEe-ccccceeEEcCccceecccccc----
Confidence 3444444433333467899999999999655443 78999999877744321 1000 00000000 0111111
Q ss_pred cCeEEEEEcCCCCEEEEEeCC-C-----------------------------------eEEEEEcCCCCccceeeE--Ee
Q 001160 409 ISVNRCVWGPDGLMLGVAFSK-H-----------------------------------IVHLYTYNPTGELRQHLE--ID 450 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~d-g-----------------------------------~i~iwd~~~~~~~~~~~~--~~ 450 (1134)
+.-..+-|||||++||....| . .+.|+|+.+++....... +.
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 223568899999999976322 1 144455555443211000 01
Q ss_pred cccCCeeEEEEecCCCcEEEEEEcCCC---cEEEEECCCCeeeEEecC-CCCCe---EEEEee-ccCCccEEEEEecCCe
Q 001160 451 AHVGGVNDIAFAHPNKQLCIVTCGDDK---MIKVWDVVAGRKQYTFEG-HEAPV---YSVCPH-HKESIQFIFSTAIDGK 522 (1134)
Q Consensus 451 ~h~~~v~~l~~s~d~~~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~-h~~~v---~~i~~~-~~~~~~~l~s~~~d~~ 522 (1134)
.-..-+..+.|.++++.+++.....+. .+.++|..++.+...+.. ..+.| ....+. +.+ +.++.....||-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~-~~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDG-NEFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTS-SEEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCC-CEEEEEEEcCCC
Confidence 223457889999998854555555444 466788877765433321 22222 244444 333 356666668887
Q ss_pred EEEEEccCCCce-eEecCCCCcEE-EEEECCCCCEEEEEee-CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 523 IKAWLYDYLGSR-VDYDAPGNWCT-MMAYSADGTRLFSCGT-SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 523 i~~wd~~~~~~~-~~~~~~~~~v~-~~~~s~~~~~l~~~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
-++|-++..... ..+....-.|. -+.++++++.++..+. .......|+..++..+..+..+..... .-..+.|+|+
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-TTEEEEE-TT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-CceEEEECCC
Confidence 666655544433 34444444664 4778898888774443 222355677777773444555655443 2257999999
Q ss_pred CCEEEEE
Q 001160 600 RNRFLAA 606 (1134)
Q Consensus 600 ~~~l~~~ 606 (1134)
+++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9988764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=75.91 Aligned_cols=237 Identities=12% Similarity=0.095 Sum_probs=138.1
Q ss_pred EEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC-CEEEE
Q 001160 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVS 941 (1134)
Q Consensus 863 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s 941 (1134)
+++.+..+.+....+.++...|..++|||....++..++.+..|.|.|+.+..++..+..| ..+++++|.-|. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777777777888899999999955558899999999999999999999999888 789999998775 56777
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE------ECCCCcEEEEEECCeEEEEeC--CCcceeccCCC
Q 001160 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ------FHNDQTHLLVVHESQISVYDS--KLECSRSWSPK 1013 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~ 1013 (1134)
|...|.|.|+|+...+...........- .+|..++ ..+.|.+|+.+ --....|+. ...+.......
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 7789999999998765432222211111 1223222 23334444432 223456666 22222221111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecC-C------cEE-EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE
Q 001160 1014 DALPAPISSAIYSCDGLLVYAGFCD-G------AIG-VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI 1085 (1134)
Q Consensus 1014 ~~h~~~v~~v~~s~dg~~l~~~~~d-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 1085 (1134)
+..+...++++.+-.+.++..-.. - .|- --|-.+|..++..+...+.... .. ....-..+.+.+.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~--~k-l~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQ--TK-LSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcc--cc-cccccceeccccccEE
Confidence 114555666665544544333221 1 111 1233455555544432211000 00 1111122223354665
Q ss_pred EE-EeCCCcEEEEecCCCccccCCCC
Q 001160 1086 AL-GMSDGAVHVVEPSDAELKWGGTP 1110 (1134)
Q Consensus 1086 ~s-~~~Dg~v~vW~~~~~~~~~~~~~ 1110 (1134)
+. |+...++++||+...+....++-
T Consensus 404 v~~gd~tn~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFEVVQTLAL 429 (463)
T ss_pred EEecCCcceeEEeccchhheeeeccc
Confidence 54 55667899999998885555543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.047 Score=64.26 Aligned_cols=224 Identities=11% Similarity=0.092 Sum_probs=122.5
Q ss_pred CEEEEEeCCeEEEEECCCCeE--EEEecCCCCceEEEEEcCCCCcEEEEEeCC--------------CcEEEEEcCCceE
Q 001160 853 SYVMSASGGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGMED--------------SSVQIYNVRVDEV 916 (1134)
Q Consensus 853 ~~la~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~~d--------------g~i~iwd~~~~~~ 916 (1134)
..++++..+.+++.-++.-+. ++++.- ......+++.+ ...++++.+.- ..++++|-.+.+.
T Consensus 685 d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~v 762 (1096)
T KOG1897|consen 685 DSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEV 762 (1096)
T ss_pred ceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeE
Confidence 456666677777776654322 233322 22345556655 34444433311 2467777666554
Q ss_pred EEEecCc----ccceEEEEEecC-CCEEEEEc----------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEE
Q 001160 917 KTKLKGH----QNRITGLAFSPT-LNALVSSG----------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 917 ~~~l~~h----~~~i~~l~~s~d-~~~l~s~~----------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 981 (1134)
+...+-. .-.|.++.|..| +.+++.|. ..|.|.++.+...+.++...-.... +.+ .+
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~------Gav--~a 834 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK------GAV--YA 834 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec------cce--ee
Confidence 4432211 113555568877 66776664 2366777777763322211111111 112 22
Q ss_pred ECCCCcEEEEEECCeEEEEeCCCc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE--eCCCcceeeecCCc
Q 001160 982 FHNDQTHLLVVHESQISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF--DAETLRFRCRIGPS 1058 (1134)
Q Consensus 982 fspdg~~l~~~~d~~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw--d~~~~~~~~~~~~~ 1058 (1134)
.---...++++-+..|++|+.+.+ .++. ...|..++..+...-.|..+++|.-=++|.+. +-..|...-..+
T Consensus 835 L~~fngkllA~In~~vrLye~t~~~eLr~---e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-- 909 (1096)
T KOG1897|consen 835 LVEFNGKLLAGINQSVRLYEWTTERELRI---ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-- 909 (1096)
T ss_pred hhhhCCeEEEecCcEEEEEEccccceehh---hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--
Confidence 222234455566788999999444 4433 33447889999999999999999888887765 444443443222
Q ss_pred ccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1059 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
-+. +.+.+++.+-. ++.++-+..+|.+++-...
T Consensus 910 D~~-------p~Wmtaveil~--~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 910 DYN-------PNWMTAVEILD--DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred hhC-------ccceeeEEEec--CceEEeecccccEEEEEec
Confidence 111 23444555543 4566667778888887654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=80.36 Aligned_cols=147 Identities=16% Similarity=0.245 Sum_probs=104.4
Q ss_pred ccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCC----CCcEEEEEeCCCcEEEEEcC--CceEEEEec
Q 001160 849 SKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----DNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 921 (1134)
Q Consensus 849 s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~lasg~~dg~i~iwd~~--~~~~~~~l~ 921 (1134)
..+|.++|+|+ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-. ..+.-..+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 56899999999 9999999998887776665 4568999999993 256788899888 8777532 112112455
Q ss_pred CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEe
Q 001160 922 GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYD 1001 (1134)
Q Consensus 922 ~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd 1001 (1134)
.-.++|.++.| .|+++|-++.+| |+++|+.+++.+.. +..+.....+..-...+.|.++.+ |++|-..+|++..
T Consensus 158 ~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 158 EGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICS 231 (846)
T ss_pred cCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEE
Confidence 66788999999 588999999888 99999998775432 222222222223456788887765 4555556777777
Q ss_pred CC
Q 001160 1002 SK 1003 (1134)
Q Consensus 1002 ~~ 1003 (1134)
++
T Consensus 232 I~ 233 (846)
T KOG2066|consen 232 IK 233 (846)
T ss_pred Ee
Confidence 63
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00047 Score=77.58 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=121.9
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
......+.++|+|++++++++|...|+.......... +.-...+|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 4457889999999999999999999999665554332 3445688988 666 55566688999974323333233
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEE
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~v 999 (1134)
++.. ..+..|.. |.+|...+.+ .|.+||+++++.+ ....- ..|..+.|+++|.+++...+..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i-----~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLI-----RRIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EE-----EEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHccee-----eEEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12444433 8888777655 7999999998743 33221 2378999999999999988899999
Q ss_pred EeCCCc------------ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccC
Q 001160 1000 YDSKLE------------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 1000 wd~~~~------------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
++.+.. ........ ...|.+.+|..| .++-.+.. .|+.+=-.....++.+..
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld~---------- 233 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLDK---------- 233 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-SS----------
T ss_pred EEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcCC----------
Confidence 888555 33333221 467888899777 44434344 777632222222333321
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..+.+. +.| +.+.+.....|+.+..+.+.-.+
T Consensus 234 -~~yllg--y~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 234 -PLYLLG--YLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp ---EEEE--EET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -ceEEEE--EEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 234333 444 34788888899999888776444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=83.25 Aligned_cols=188 Identities=14% Similarity=0.146 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
...++|++++. ++++.|+.+|.|++++... .. .+...|+.. .-+|.+++||+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 34678888864 7999999999999999764 33 444446554 5679999999999999999998876433
Q ss_pred ceeeecCCCCCCCCcCceEEEECCC-----CcEEEEEECCeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEE
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFHND-----QTHLLVVHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspd-----g~~l~~~~d~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
..-.. .++..++++|| .+++++|+...+.++.-+ ++.... ......++|.++.| .|.++|
T Consensus 108 ~~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v--~l~~~eG~I~~i~W--~g~lIA 174 (846)
T KOG2066|consen 108 QYDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV--VLSEGEGPIHSIKW--RGNLIA 174 (846)
T ss_pred eEecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce--eeecCccceEEEEe--cCcEEE
Confidence 22111 35789999999 567777655448787751 221111 12223789999999 566777
Q ss_pred EEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1034 AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1034 ~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
=++.+ -|+|||..+++.+..+...... ...+..+-.+.|.+ ...|+.|= -.+|.+-.+.
T Consensus 175 Wand~-Gv~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 175 WANDD-GVKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred EecCC-CcEEEeccccceeeccCCCCCC----CCcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 66544 5999999999999888765422 12335566788886 35666664 3468888776
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0051 Score=71.80 Aligned_cols=191 Identities=10% Similarity=0.077 Sum_probs=115.9
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCC------CeE--EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA------PVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
.++.++.++.|+-.|..+|+.+..+..... .+. .+.+ . ++..++.++.++.|..+|.++++.+......
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 466777789999999999998876653322 010 0111 1 1157888889999999999999988876654
Q ss_pred CCc-----E-EEEEECCCCCEEEEEeeCCC-----CCCcEEEEeCCCCeeEEEecCccC-------------------cc
Q 001160 541 GNW-----C-TMMAYSADGTRLFSCGTSKE-----GESHLVEWNESEGAIKRTYSGFRK-------------------RS 590 (1134)
Q Consensus 541 ~~~-----v-~~~~~s~~~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~-------------------~~ 590 (1134)
... + .+..+. +..++.++.+.+ .++.++.+|..+|+.+-.+..... ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 331 1 111221 244444432211 257799999999998877654311 00
Q ss_pred e-EEEEEeCCCCEEEEEeCCC------------------eEEEEECCCCeeEEEEeCCCCCC----CcceEEEc----cC
Q 001160 591 L-GVVQFDTTRNRFLAAGDEF------------------QIKFWDMDNMNMLTTVDADGGLP----ASPRLRFN----KE 643 (1134)
Q Consensus 591 v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s----~d 643 (1134)
+ ...++.+.+..++.++.++ .|.-+|..+|+..-..+...+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1244555567777776554 78889999998887765321100 00011111 13
Q ss_pred CC---EEEEEeCCCcEEEEECCCc
Q 001160 644 GS---LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 644 ~~---~l~~~~~dg~i~iw~~~~~ 664 (1134)
|. .++.++.+|.+..+|..+|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG 321 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTG 321 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCC
Confidence 33 5677778888888888887
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00066 Score=76.08 Aligned_cols=204 Identities=12% Similarity=0.084 Sum_probs=123.5
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...|.--+++..+++++.|++.|.+.+|+-..+ +.......+ - .+.+....+|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~~--~-~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNEG--A-TGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhcccccC--c-cceEEEEEecc
Confidence 4455666677888999999999999999974322 111111111 1 45667788899
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE---E--EEe-cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce----EEEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV---M--TMF-MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE----VKTK 919 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~---~--~~~-~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~----~~~~ 919 (1134)
+..++|.|+ .|.|.|+-+..... + ..+ ..|...|+|++|++ ++..+.+|...|+|..-.+.+.. ....
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~ 165 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQE 165 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccce
Confidence 999999998 78899998765321 1 111 23678899999999 99999999999999998887721 1122
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC----CcEEEEEECC
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND----QTHLLVVHES 995 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd----g~~l~~~~d~ 995 (1134)
+..-.+.|..|... ++.+|++.... ..+.+++.+...+ +...... ...-...+|-|. .+-.+.+..-
T Consensus 166 il~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti~Q---IG~k~R~---~~~~~GACF~~g~~~~q~~~IycaRP 236 (726)
T KOG3621|consen 166 ILSEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETITQ---IGKKPRK---SLIDFGACFFPGQCKAQKPQIYCARP 236 (726)
T ss_pred eeccCcceEEeecc-cceehHhhhhh--hheeecchhHHHH---hcCCCcC---CccccceEEeeccccCCCceEEEecC
Confidence 33345677777764 45555554433 3445554433110 1000000 011345566554 3444445555
Q ss_pred eEEEEeC--CCcceec
Q 001160 996 QISVYDS--KLECSRS 1009 (1134)
Q Consensus 996 ~v~vwd~--~~~~~~~ 1009 (1134)
..++|.+ .|..+++
T Consensus 237 G~RlWead~~G~V~~T 252 (726)
T KOG3621|consen 237 GLRLWEADFAGEVIKT 252 (726)
T ss_pred CCceEEeecceeEEEe
Confidence 5667765 4444443
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.2e-06 Score=50.19 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhc
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1134)
+++.+||++||.++||.+||++|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0056 Score=71.48 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=65.6
Q ss_pred EEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE------------------eCCCcEEEEEcCCc
Q 001160 854 YVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG------------------MEDSSVQIYNVRVD 914 (1134)
Q Consensus 854 ~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg------------------~~dg~i~iwd~~~~ 914 (1134)
.+++++ +|.+...|..+|+.+...... ...++.+| ..+..+ ..+|.+.-.|+.+|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 455666 899999999999988776421 11233333 222222 24678888899999
Q ss_pred eEEEEecCcc--------cceE--EEEEecCCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 915 EVKTKLKGHQ--------NRIT--GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 915 ~~~~~l~~h~--------~~i~--~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+.+....... .+.. .++ -.+..|+.++.|+.|+.+|.++|+.+-.
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 8887765321 1111 122 2457788889999999999999996544
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0066 Score=69.91 Aligned_cols=250 Identities=12% Similarity=0.089 Sum_probs=139.7
Q ss_pred eeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...++||||++++++-+..| .+++.|+.+|+.+.. . +. ...-..++|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~--~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IE--NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EE--EEESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------cc--ccccceEEEeCCCCEEE
Confidence 446789999997666655555 599999999976542 0 11 11123499999999877
Q ss_pred EEeCC-----------CeEEEEEcCCCCccceeeEEecccCC--eeEEEEecCCCcEEEEEEcC-C-CcEEEEECCCC--
Q 001160 425 VAFSK-----------HIVHLYTYNPTGELRQHLEIDAHVGG--VNDIAFAHPNKQLCIVTCGD-D-KMIKVWDVVAG-- 487 (1134)
Q Consensus 425 s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~sg~~-d-~~i~iwd~~~~-- 487 (1134)
....+ ..|..|.+.+...-. ...+...... ...+..++|++.++|.+.+. + ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 66432 247788887654321 1234443333 56888999999633333332 2 46888898775
Q ss_pred --eeeEEecCCCCCeE-EEEeeccCCccEEEEEe---cCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEEE
Q 001160 488 --RKQYTFEGHEAPVY-SVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 488 --~~~~~~~~h~~~v~-~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
.....+......+. .+... ++ .+++... ..+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~--~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH--GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE--TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CcCCcEEEeCCCCceEEEEEcc--CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 22333333333343 33332 21 3443332 345677778777663 2244444443333333445566665
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE--Ee--CCCeEEEEECCCCeeE
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA--AG--DEFQIKFWDMDNMNML 623 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1134)
... .++...|+++++..+.....+.....+.|..+...++++.+.. .| .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 3456789999998555555555544445666666666655443 33 4467888899887754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=82.93 Aligned_cols=183 Identities=10% Similarity=0.092 Sum_probs=129.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
++..++.|+-...+..+|+.+.+..+ ...--...|.-++. +++ ++.+|...|+|.+-|..+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 55677888888889999999876554 22222334554543 466 899999999999999999999999999999
Q ss_pred CeEEEEeeccCCccEEEEEec---------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCc
Q 001160 499 PVYSVCPHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG-TRLFSCGTSKEGESH 568 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~ 568 (1134)
.|..+.. .|+.|++++. |.-|+|||++..+.+..+..+.++ .-+.|.|.- ..+++++. .|+
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 3478888875 445899999987766554443332 345666643 34445543 566
Q ss_pred EEEEeCCC-Cee-EEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 569 LVEWNESE-GAI-KRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 569 i~~wd~~~-~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
..+-|..+ +.+ ...+..+. +..+..++++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77777432 111 22222222 224889999999999999999999999973
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00042 Score=76.62 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCceEEEEecc-CCCEEEEEe-----CCe----EEEEECCCCeEEEE---ecCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001160 840 EESAACIALSK-NDSYVMSAS-----GGK----VSLFNMMTFKVMTM---FMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 840 ~~~i~~~~~s~-dg~~la~~s-----dg~----i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
+....++.||. +...+.+.. +|. ..+|++...+..+. --.....|.+++++| +...|+.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 45567788887 344444432 343 56788766543322 113667899999999 88899999999999
Q ss_pred EEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
.+||...+... +..+.-..+.++|+|+|.++++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99998766332 22344557899999999999999999999999997643
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0026 Score=70.62 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred CceEEEECC-CCcEEEEE-----ECCe----EEEEeCCCcceec-cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 976 GETKVQFHN-DQTHLLVV-----HESQ----ISVYDSKLECSRS-WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 976 ~v~~~~fsp-dg~~l~~~-----~d~~----v~vwd~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
.+.++.||- +...+.+. .+|. -.+|+.....++. -...-.+...|.+.+++|+...|+.|+.||+|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 446788886 34444442 2333 3577772222221 11112347899999999999999999999999999
Q ss_pred eCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1045 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
|...+..... + ....|..++|+| +|.++++|+..|.+.+||+.-.-
T Consensus 287 D~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9987643322 1 225577899999 78999999999999999986544
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0024 Score=71.78 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=120.7
Q ss_pred EecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeE--E
Q 001160 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKI--K 524 (1134)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i--~ 524 (1134)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-+|+|++. .++++...||.. .
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 3334556778899999996433333333 369999999887655443 223334456777652 455556667764 5
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
+.|+....... +....+.-..-.|+|||++++..+ ++.+...|.+++.+.+.. ..+..... .-..-.++|||++++
T Consensus 266 ~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~-~riT~~~~-~~~~p~~SpdG~~i~ 341 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQV-TRLTFSGG-GNSNPVWSPDGDKIV 341 (425)
T ss_pred EEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCce-eEeeccCC-CCcCccCCCCCCEEE
Confidence 55666555333 333333334778999999999876 455667788888887665 33322222 112677999999998
Q ss_pred EEeC-CCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 605 AAGD-EFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 605 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
..+. +|. |.+.|+.++.....+.... ....-.|.++|..+...+..
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 8663 344 6677776666544443321 23456778888877665543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0057 Score=65.71 Aligned_cols=291 Identities=16% Similarity=0.110 Sum_probs=135.5
Q ss_pred ceEEEEEecCCcceEEeec-cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 774 KVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
.-+.=+|.+||+.|+.++. +|.-.+|-+ |+.+++..+..-.. ........++++.
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QLTdg~----g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQLTDGP----GDNTFGGFLSPDD 92 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE---SS-----B-TTT-EE-TTS
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEECccCC----CCCccceEEecCC
Confidence 3344567889977665554 666666644 44555544321110 1122246677888
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEc-CCCCcEEEEEe---CC-------------------CcEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH-PQDNNIIAIGM---ED-------------------SSVQI 908 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~lasg~---~d-------------------g~i~i 908 (1134)
+.++... +..++-.|+++.+....+..+..-+....|. ..|+..++-.- .| ..|.-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 8887665 6789999999988766666666666555664 22555543221 11 13555
Q ss_pred EEcCCceEEEEecCcccceEEEEEecCCCEEEEEc----CCCc-EEEEeCCCcccccceeeecCCCCCCCCcCceEEEEC
Q 001160 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG----ADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~----~D~~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
-|+.+|+....+. -..-+..+.|||....+++-+ .|.. -|||-+.+.......+..... ...+..=-|+
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~ 246 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWV 246 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----Cccccccccc
Confidence 5777777554444 334567899999655554433 3332 477876653322211111111 2456777899
Q ss_pred CCCcEEEE-EE-----CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC----------------c
Q 001160 984 NDQTHLLV-VH-----ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG----------------A 1040 (1134)
Q Consensus 984 pdg~~l~~-~~-----d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg----------------~ 1040 (1134)
|||..+.. +. +..|.-+|+ +++. ..+.. ......+.-++||++++-=+.|. .
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEEEE----E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 99998877 32 234666676 3333 22211 23455666679999877544442 4
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEE-EEEeCCCcEEEEecC
Q 001160 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQI-ALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~s~~~Dg~v~vW~~~ 1100 (1134)
|+++++.++......................--...|+| ||+++ .++...|...||-+.
T Consensus 322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEEEETTTTEEEEEEE-------BTTBSSTT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 677888877654222211000000000111223588999 55554 466677877776543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.048 Score=63.93 Aligned_cols=108 Identities=9% Similarity=0.001 Sum_probs=65.1
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC-cEEE----------EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN-WCTM----------MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~----------~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
..++.++.++.|.-.|..+++.+..+..... .+.. +++ .+..++.++ .++.+.-.|.++|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t----~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGT----LDARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEc----CCCEEEEEECCCCCEE
Confidence 4677777778888888888887776543221 1111 112 123455544 3678999999999988
Q ss_pred EEecCccCc---ceEE-EEEeCCCCEEEEEe------CCCeEEEEECCCCeeEEEEe
Q 001160 581 RTYSGFRKR---SLGV-VQFDTTRNRFLAAG------DEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 627 (1134)
-........ .+.+ -... ++ .++++. .+|.|+.+|.++|+.+-.+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred eecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 776532110 1111 1111 33 455543 26899999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.5e-05 Score=61.74 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=42.2
Q ss_pred HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHHHHHHHHHHHHhccCH
Q 001160 38 MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDR 90 (1134)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~lEll~~~~~ 90 (1134)
+..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||+..++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 67899999999999999999887544322222 48999999999999998764
|
Alpha-helical motif of unknown function. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.1e-05 Score=53.02 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCC
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1134)
++++.++|+|||...||.+|+++|++|+|+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.007 Score=67.34 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=139.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------------------------------------ceeeEE
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL----------------------------------------RQHLEI 449 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~----------------------------------------~~~~~~ 449 (1134)
.|+.+.|+++...||+|...|.|.||.+...+.. ....-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4889999999999999999999999876432111 112223
Q ss_pred ecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE--ecC------CCCCeEEEEee---ccCCc---cEEE
Q 001160 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT--FEG------HEAPVYSVCPH---HKESI---QFIF 515 (1134)
Q Consensus 450 ~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~--~~~------h~~~v~~i~~~---~~~~~---~~l~ 515 (1134)
+...++|++++.|.-| +++.|..+|.+.|.|++....++. +.. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3457899999998666 799999999999999988887765 222 23467788776 33343 5788
Q ss_pred EEecCCeEEEEEccC-CCcee------EecCCCCcEEEEE-ECCC---------------------CCEEEEEeeCCCCC
Q 001160 516 STAIDGKIKAWLYDY-LGSRV------DYDAPGNWCTMMA-YSAD---------------------GTRLFSCGTSKEGE 566 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~-~~~~~------~~~~~~~~v~~~~-~s~~---------------------~~~l~~~~~~~~~~ 566 (1134)
+|...|.+.+|.+.- ..... ....+...|..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 999999999998752 21111 1113444554444 3221 11444544 4
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEe-----CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceEE
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFD-----TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRLR 639 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~ 639 (1134)
..++++...+.+.......... ....+.+- ..+..|++-..+|.|+++.+..-+.+..+..... ...+....
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 5699999888776655442211 23334442 2456677888999999999999998888876421 12356778
Q ss_pred EccCCCEEEEEeCCCcEEEEEC
Q 001160 640 FNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++++|..++-.+.. .+.++.+
T Consensus 314 is~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSS-EEEEEEE
T ss_pred ECCCCCEEEEeCcc-cEEEEEE
Confidence 89999977766544 4444444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0018 Score=72.79 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=113.4
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe---CC-CcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM---ED-SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~---~d-g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
..+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++....+. ..+.-...+|||||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence 445555655 555555555556677888999 777665543 22 359999999886544443 22333467899999
Q ss_pred CEEEEE-cCCCc--EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC----eEEEEeCCCcceec
Q 001160 937 NALVSS-GADAQ--LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES----QISVYDSKLECSRS 1009 (1134)
Q Consensus 937 ~~l~s~-~~D~~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~----~v~vwd~~~~~~~~ 1009 (1134)
+.|+-+ ..|+. |.+.|+.++... .+....+.. ..-.|+|||++++..+|+ .|.+++.++.....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~---~Lt~~~gi~------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLP---RLTNGFGIN------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCcce---ecccCCccc------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 887754 45665 555677665521 133333322 367899999999986543 47778887766655
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcceee
Q 001160 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCD-GA--IGVFDAETLRFRC 1053 (1134)
Q Consensus 1010 ~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g~--I~vwd~~~~~~~~ 1053 (1134)
+....+ .-..-.+||||++++..+.. |. |.+.|+.++....
T Consensus 321 iT~~~~---~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 321 LTFSGG---GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred eeccCC---CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 544321 12277899999998877753 44 7777777766433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0058 Score=68.93 Aligned_cols=222 Identities=11% Similarity=0.074 Sum_probs=118.9
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
........+.++|+|++++++ .+|.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 344557899999999999994 6777777773332 21 1223456788988664 6666668899997422
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+.+....++. ...+..+-. |.+|...+.+ .|.+||+.+.+.+..+... .|..+.|+++|++++..+
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----- 163 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----- 163 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE------
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe-----
Confidence 3333233332 223444432 3566655544 8999999998888877654 489999999999999886
Q ss_pred CCcEEEEeCCCC-----------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--eEEEEeCCCCC
Q 001160 566 ESHLVEWNESEG-----------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--MLTTVDADGGL 632 (1134)
Q Consensus 566 ~~~i~~wd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 632 (1134)
+..+.+++.... .....+.... ..|.+.+|..+ .++-.... .++.+ -.|+ .+..++
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld----- 232 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD----- 232 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-----
T ss_pred CCeEEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-----
Confidence 345777765433 0122222112 26788888866 44433333 66663 3333 333332
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++-+.+.++.+.+.....++.+..+.+...
T Consensus 233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 25677788887788999999999999988654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.012 Score=60.54 Aligned_cols=191 Identities=10% Similarity=0.113 Sum_probs=110.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...+.+++|.|++..|+|+....+.|...+.. |+.+.+.. +.+ .+..-.|++..++.++++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEEE
Confidence 34699999999988899999888899888864 66554321 222 346778899888888887
Q ss_pred EeCCCeEEEEEcCCCCc-c--ceee--EEe---cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeeeEE--
Q 001160 426 AFSKHIVHLYTYNPTGE-L--RQHL--EID---AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQYT-- 492 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~-~--~~~~--~~~---~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---~~~~~~-- 492 (1134)
.-.++.+.+.++..... + .... .+. .+...+..++|.+.++. |+.+-+.....++.+.. +..+..
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeecc
Confidence 76799999999854322 1 1111 111 24567899999999885 44445555555555442 221111
Q ss_pred e------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------CcEEEEEECCCCCEEE
Q 001160 493 F------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLF 557 (1134)
Q Consensus 493 ~------~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~ 557 (1134)
. ......+.+++++|.. +.+++.......|..+| ..++.+..+.... ...-.++|.++|+..+
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred ccccccccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1234567888998874 47888888889999998 4455444333332 2578999999997776
Q ss_pred EE
Q 001160 558 SC 559 (1134)
Q Consensus 558 ~~ 559 (1134)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 65
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0091 Score=66.45 Aligned_cols=253 Identities=15% Similarity=0.194 Sum_probs=133.3
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc------cc------------cceeecccccc------ccccccc
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA------HK------------PFKVWDISAAS------MPLQNAL 403 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~ 403 (1134)
.|+.+.|+++... |++|...|.|.||.+...+.-. .. .-.+-|+.... ...+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999763 6789999999999886553321 00 11122222111 1233445
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEec------ccCCeeEEEEec---CCC---cEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAH---PNK---QLCIV 471 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~---d~~---~~~l~ 471 (1134)
+....++|++++.| |=-++|+|..+|.+.|.|+++...+... .+.. ....|+++.|+- .++ .+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 5559999999999999999876654321 1222 234688888872 222 25788
Q ss_pred EEcCCCcEEEEECC-C--Ceee----EEecCCCCCeEEEEeeccCCc-------------------cEEEEEecCCeEEE
Q 001160 472 TCGDDKMIKVWDVV-A--GRKQ----YTFEGHEAPVYSVCPHHKESI-------------------QFIFSTAIDGKIKA 525 (1134)
Q Consensus 472 sg~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~~~d~~i~~ 525 (1134)
.|...|.+.+|.+. . +... .....+.++|..+..-....| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999775 1 2211 122246677777653311110 23455556888999
Q ss_pred EEccCCCceeEecCCCCcEEEEEEC-----CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC---cceEEEEEe
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYS-----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK---RSLGVVQFD 597 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~ 597 (1134)
+...+.+..............+.+- ..+..|++-. .+|.++++.+..-+.+..+..... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888766655444222233444453 2344455444 488899999999888877665321 123345667
Q ss_pred CCCCEEEEEe
Q 001160 598 TTRNRFLAAG 607 (1134)
Q Consensus 598 ~~~~~l~~~~ 607 (1134)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.02 Score=64.77 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=110.6
Q ss_pred EEEeccCCCEEEEEeCC------------eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 845 CIALSKNDSYVMSASGG------------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 845 ~~~~s~dg~~la~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
.++.+|.|..+|...|. .|.||+.. |+.+..+.-..+.|.++.|+. +.. |++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCC
Confidence 35666777777766543 59999985 566666544448999999997 544 4557799999999986
Q ss_pred Cce------EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc-cceeeecCCCCCC---CCcCceE-EE
Q 001160 913 VDE------VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL-KSRFIQAPAGRQS---PLVGETK-VQ 981 (1134)
Q Consensus 913 ~~~------~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~-~~~~~~~~~~~~~---~~~~v~~-~~ 981 (1134)
... .+....-....+....+..+|-.+.+ .++.+.+- ...+.. ....+....+... ....... ..
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 185 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL 185 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceE
Confidence 333 11111112222333344445533333 33333332 222210 1011111111000 0001111 33
Q ss_pred ECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 982 FHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 982 fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
++.++...+. ..++.+.+.+. ..+. +. ..+++..|++||+|++||.-..+|.+.|.+.+-.+.++++...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 5555554444 44556664443 2111 11 1468999999999999999999999999988777777666543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0066 Score=60.68 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=138.4
Q ss_pred EEEeccCCC-EEEEEe-CCe-EEEEECCCCeEEEEecCCCCc--eEEEEEcCCCCcEEEEEeCC-----CcEEEEEcCCc
Q 001160 845 CIALSKNDS-YVMSAS-GGK-VSLFNMMTFKVMTMFMSPPPA--ATFLAFHPQDNNIIAIGMED-----SSVQIYNVRVD 914 (1134)
Q Consensus 845 ~~~~s~dg~-~la~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~lasg~~d-----g~i~iwd~~~~ 914 (1134)
.++|+|-.. -++.+- -|+ ..++|..+.+...++....+. --.=.||| ||.+|...-.| |.|-|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence 577888544 455555 454 788999888776665433322 12246999 89998765444 78999998854
Q ss_pred -eEEEEecCcccceEEEEEecCCCEEEEEcC------C------------CcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 915 -EVKTKLKGHQNRITGLAFSPTLNALVSSGA------D------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 915 -~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~------D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+.+..+..|.-.--.+.+.+||+.|+.+.. | -++.+.|..+|+.+....+.....+ .
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l 226 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L 226 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence 556778888877788999999999987643 1 2344555555554443332211111 4
Q ss_pred CceEEEECCCCcEEEEEE-CC--e-----EEEEeCCCcceeccCCCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001160 976 GETKVQFHNDQTHLLVVH-ES--Q-----ISVYDSKLECSRSWSPKD----ALPAPISSAIYSCDGLLVYAGF-CDGAIG 1042 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~-d~--~-----v~vwd~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~~~~-~dg~I~ 1042 (1134)
.+..++..+||+.++.+. .| . |-.+. .++.+..+.... ....-|-+|+...+..+++..+ .-++..
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~-~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFR-KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeecc-CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 578888889988777642 11 0 11111 222221111110 0134577888876666655544 445678
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
+||..+|..+....... .. .++. ...-++..+.+|.++++.
T Consensus 306 i~da~tG~vv~~a~l~d----------aa--Gva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAALPD----------AA--GVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEecccccc----------cc--ccee---ccCceEEecCCceEEecc
Confidence 89999999886554221 11 1222 223444555678888774
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.012 Score=60.46 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=111.8
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCC-CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce-
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE- 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~- 915 (1134)
...++.++|.|+...|++.. .+.|..++.+ |+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----T
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecccc
Confidence 45699999999877555554 5788888874 7777776533 35678899987 77777766568999999984321
Q ss_pred -----EEEEe----c-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC---cccccceeeecCCCCCCCCcCceEEEE
Q 001160 916 -----VKTKL----K-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 916 -----~~~~l----~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
....+ . .+...+-.|+|.|.++.|+.+-...-..++.+.. .....................+..+++
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 11122 1 2445689999999888887777776677777654 111111111111101111145788999
Q ss_pred CCCCcEEEE-E-ECCeEEEEeCCCcceeccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 983 HNDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 983 spdg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
+|....|.+ + ..+.|..+|.+++.+..+.-..+. -..--.|+|.++|++.+ .++-+..++|
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 998766555 4 457788888877765544333211 23577899999997544 4566655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=2.2e-05 Score=86.10 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=130.7
Q ss_pred CCeeEEEEecCCC-eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEE
Q 001160 347 SNVMSMDFHPQQQ-TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~-~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~la 424 (1134)
..+.|++++-+.+ -++++|..+|.|.+-.+....-- . .....+|....++++|++ |...||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s-----------~E~tp~~ar~Ct~lAwneLDtn~LA 119 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------S-----------AEVTPGYARPCTSLAWNELDTNHLA 119 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------c-----------ceecccccccccccccccccHHHHH
Confidence 3566776655443 58899999999999887654321 0 112467888999999999 677888
Q ss_pred EEe----CCCeEEEEEcCCCCcc-ceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEEecCCC
Q 001160 425 VAF----SKHIVHLYTYNPTGEL-RQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHE 497 (1134)
Q Consensus 425 s~~----~dg~i~iwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~h~ 497 (1134)
+|- .|..+.|||+.++-.. .....+.+ -.....+++|..+.+ ++.+|...+.++++|++... ....+ .+
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nT 195 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NT 195 (783)
T ss_pred hhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hh
Confidence 873 4678999999886211 11112222 344566889988877 78899999999999987322 11122 22
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEE-ccCCCceeEecCC-----CCcEEEEEECCCCCE-EEEEeeCCCCCCcEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWL-YDYLGSRVDYDAP-----GNWCTMMAYSADGTR-LFSCGTSKEGESHLV 570 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~-l~~~~~~~~~~~~i~ 570 (1134)
..+..+.+.|-. +.++++-. ||.|.+|| ..+.+.......+ ...+..++|.|...- +++... ..++|+
T Consensus 196 k~vqG~tVdp~~-~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPFS-PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCCC-CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 345556665532 25776655 99999999 4443333222111 225889999996544 444443 367899
Q ss_pred EEeCC
Q 001160 571 EWNES 575 (1134)
Q Consensus 571 ~wd~~ 575 (1134)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.11 Score=58.53 Aligned_cols=263 Identities=13% Similarity=0.133 Sum_probs=167.2
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.....+.-......+.+.|+|..+.++-.....+.+-+......... ...-...-..++.+
T Consensus 22 ~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~ 82 (381)
T COG3391 22 KVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVN 82 (381)
T ss_pred EEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeC
Confidence 33334443346778889999965555544333444444331111100 00111345578899
Q ss_pred CCCCEEEE-EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeeeEEecC
Q 001160 418 PDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 418 pdg~~las-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
+++..+.. ...++.|.+.|..+........ .+. .-..++++++++.++++-.. .++++.+.|..+++.+.+...
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEee--ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 98885554 4456889999977655443211 122 56789999999864444333 478999999999988887654
Q ss_pred CCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCcee-E---ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 496 HEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRV-D---YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
-..+ ..+++.|++ ..+ ++-..++.|.+.|........ . ..........+.++|+|+++...... +.++.+.
T Consensus 159 G~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~~~v~ 234 (381)
T COG3391 159 GNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGSNNVL 234 (381)
T ss_pred CCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc-CCCceEE
Confidence 4445 778887765 544 444588999999966544332 0 11222344678999999987766531 1246899
Q ss_pred EEeCCCCeeEEE-ecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeC
Q 001160 571 EWNESEGAIKRT-YSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 571 ~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
..|..++..... +..... ....+..+|+|..+++.. ..+.+.+-|..+.........
T Consensus 235 ~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 235 KIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 999988877665 333332 345588999999988874 458899999988887776653
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=80.17 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=132.2
Q ss_pred CCceEEEEeccCCC--EEEEEe-CCeEEEEECCCCeE--EEEecCCCCceEEEEEcCCCCcEEEEEe----CCCcEEEEE
Q 001160 840 EESAACIALSKNDS--YVMSAS-GGKVSLFNMMTFKV--MTMFMSPPPAATFLAFHPQDNNIIAIGM----EDSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~--~la~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~lasg~----~dg~i~iwd 910 (1134)
...+.|++...+.. .+++|. +|.|.+-......- ....+++...+++++|.+-|.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44567777666544 566776 89998887764322 2345567788999999997888898774 456799999
Q ss_pred cCCc--eEE--EEecC-cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC-
Q 001160 911 VRVD--EVK--TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN- 984 (1134)
Q Consensus 911 ~~~~--~~~--~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp- 984 (1134)
+.++ .+. ..+.+ -.....+++|-.|.+++.+|.....+.++|+...-.....+ .. ..+..+...|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hh--------hhcccceecCC
Confidence 9876 111 12222 33445688998899999999888899999987422111111 10 2356788888
Q ss_pred CCcEEEEEECCeEEEEeC--CCcceec--cCCCCCCCCCeEEEEEccCCC-EEEEEecC-CcEEEEeCC
Q 001160 985 DQTHLLVVHESQISVYDS--KLECSRS--WSPKDALPAPISSAIYSCDGL-LVYAGFCD-GAIGVFDAE 1047 (1134)
Q Consensus 985 dg~~l~~~~d~~v~vwd~--~~~~~~~--~~~~~~h~~~v~~v~~s~dg~-~l~~~~~d-g~I~vwd~~ 1047 (1134)
.+.+++...|+.|.+||. +.+.... ..........+..++|+|-.. .|++...| ++|+.+|+.
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 888999988999999994 3222211 111111134589999998533 45555554 779999875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.027 Score=63.40 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=141.5
Q ss_pred eEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC---CCcEEEEEcCCceEE
Q 001160 843 AACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME---DSSVQIYNVRVDEVK 917 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~---dg~i~iwd~~~~~~~ 917 (1134)
...+++++++..+.... ++.|.+.|..+.+......--. ....++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45688999988666554 6899999988777766654222 667899999 6655555544 689999999999888
Q ss_pred EEecCcccceEEEEEecCCCEEEEE-cCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--C
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--E 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d 994 (1134)
.....-..+ ..++++|+|..+..+ ..++.|.+.|.++..... ...............++++|||.++.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 775543344 899999999955544 478899999977755321 01000111113457899999999877743 2
Q ss_pred --CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEeCCCcceeeecCC
Q 001160 995 --SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-GAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 995 --~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g~I~vwd~~~~~~~~~~~~ 1057 (1134)
+.+...|.............+-. ....+.++|+|+++.+.... +.+.+-|..+......+..
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 47888888444333331111112 45678999999998877444 8899999998877766553
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.04 Score=59.31 Aligned_cols=234 Identities=13% Similarity=0.123 Sum_probs=134.7
Q ss_pred cCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCC
Q 001160 782 NSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 861 (1134)
Q Consensus 782 ~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg 861 (1134)
..++.|+.|+.+| +.++++... ..... .. + ...|..+...++-+.+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-------------------~~~~~----i~---~-~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-------------------SKPTR----IL---K-LSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-------------------cccee----Ee---e-cceEEEEEEecccCEEEEEcCC
Confidence 3567788888888 777775100 00000 11 2 4459999999999999888899
Q ss_pred eEEEEECCCCeEEEEe--------------cCCCCceEEEE--EcCCCCcEEEEEeCCCcEEEEEcCCc-----eEEEEe
Q 001160 862 KVSLFNMMTFKVMTMF--------------MSPPPAATFLA--FHPQDNNIIAIGMEDSSVQIYNVRVD-----EVKTKL 920 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~lasg~~dg~i~iwd~~~~-----~~~~~l 920 (1134)
.+.++++......... ......+...+ -...+..+|+++ ...+|.+|..... +..+.+
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEE
Confidence 9999999865443311 11223344444 112244555555 4458888887653 345555
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC------CCCcCceEEEECCCCcEEEEEEC
Q 001160 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ------SPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
. -.+.+.+++|. ++.++.+..++ ..+.|+.++..... . ...... ........+.--+++.+|++ .+
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~-~~ 207 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--L-DPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC-YD 207 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--e-CccCCcchhhhcccCCCceEEEEeCCceEEEE-ec
Confidence 5 34678899998 55666666554 88899997664221 1 111100 00011223333344555554 44
Q ss_pred CeEEEEeCCCccee-ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 995 SQISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 995 ~~v~vwd~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
..-...|..|...+ ....- .....++++ ...||++.+. +.|.||++.+|+++..+...
T Consensus 208 ~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 208 NIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 44455565554333 11111 335566666 3347776654 56999999999998887643
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.32 Score=57.09 Aligned_cols=192 Identities=11% Similarity=0.081 Sum_probs=117.1
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC-CCeEE----------EEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE-APVYS----------VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~----------i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+.-.|..+++.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 46667778899999999999887664311 11111 122 1256778889999999999998887765
Q ss_pred cCCCCc-EEEEEECC---CCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCccCc----------------------
Q 001160 538 DAPGNW-CTMMAYSA---DGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKR---------------------- 589 (1134)
Q Consensus 538 ~~~~~~-v~~~~~s~---~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~---------------------- 589 (1134)
...... -..+.-+| ++ .++.+... ...++.|..+|.++|+.+-.+..-...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432111 01111112 34 44443321 112578999999999987665432110
Q ss_pred --------c-eEEEEEeCCCCEEEEEeCC-----C-----------eEEEEECCCCeeEEEEeCCCCC-------CCcce
Q 001160 590 --------S-LGVVQFDTTRNRFLAAGDE-----F-----------QIKFWDMDNMNMLTTVDADGGL-------PASPR 637 (1134)
Q Consensus 590 --------~-v~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~-------~~v~~ 637 (1134)
. -..+++.+....++.+..+ + .|.-.|+++|+..-.++...+. ....-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 1 1134667766677665411 2 6777889999988777643221 11112
Q ss_pred EEEccCCC---EEEEEeCCCcEEEEECCCch
Q 001160 638 LRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 638 ~~~s~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+.+..+|+ .++.+..+|.+.++|-.+|+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 22334676 78889999999999999993
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.096 Score=60.31 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=128.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-C--------
Q 001160 410 SVNRCVWGPDGLMLGVA-FSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-D-------- 475 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~-~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~-------- 475 (1134)
.+...++||||+++|.+ +.. ..+++.|+.+++.+.. .+... ....+.|.+|++. ++.+.. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578899999999976 333 3699999999865542 11111 1223999999985 334332 2
Q ss_pred -CCcEEEEECCCCeee--EEecCCCCC--eEEEEeeccCCccEEEEEec-C---CeEEEEEccCC----CceeEe-cCCC
Q 001160 476 -DKMIKVWDVVAGRKQ--YTFEGHEAP--VYSVCPHHKESIQFIFSTAI-D---GKIKAWLYDYL----GSRVDY-DAPG 541 (1134)
Q Consensus 476 -d~~i~iwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~~~l~s~~~-d---~~i~~wd~~~~----~~~~~~-~~~~ 541 (1134)
...|+.|.+.++..- ..+...... ...+..+ .++++++..+. . ..+.+.|+... .....+ ....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s--~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS--KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec--CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 334888998876532 344444443 3455554 45577665432 2 34677777764 122233 3233
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccC-cceEEEEEeCCCCEEEEE-eCC--CeEEE
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDE--FQIKF 614 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~d--g~i~i 614 (1134)
+....+... +..++..+......+.|...++.+... ...+..+.. ..+..+.. .+++|+.. ..+ ..|++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEE
Confidence 333333333 443333332333467788888876652 223333333 13444443 45555553 333 35888
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+++..+.....+..... ..|..+...+++..+..... -+++..||+.++
T Consensus 354 ~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 99984555555554432 24555555555554433222 357888888877
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.023 Score=66.92 Aligned_cols=151 Identities=14% Similarity=0.038 Sum_probs=88.4
Q ss_pred CCceEEEEEcCCCCcEEEEEe------CCC--cEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC-CcEEEE
Q 001160 881 PPAATFLAFHPQDNNIIAIGM------EDS--SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD-AQLCMW 951 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~------~dg--~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D-~~i~iW 951 (1134)
...+...++|| +|+.+|... .|. .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.
T Consensus 349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 34678999999 777776655 244 4555554 23332223332 47889999999888877533 222222
Q ss_pred -----------eCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC---CCcceeccC---CCC
Q 001160 952 -----------SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS---KLECSRSWS---PKD 1014 (1134)
Q Consensus 952 -----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~---~~~~~~~~~---~~~ 1014 (1134)
+++.++... .....|..+.|||||++++...+++|.+--+ .+.....-. ...
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec
Confidence 333322110 0114689999999999999976788877333 222222100 111
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1015 ALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1015 ~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
+....+.++.|..++.++ ++..++...+|.+.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 223446889999999955 55555555555543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.023 Score=57.03 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=134.7
Q ss_pred EEEEEeCCCCE-EEEEeCCCe-EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-----CCcEEEEECCCc
Q 001160 592 GVVQFDTTRNR-FLAAGDEFQ-IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDG 664 (1134)
Q Consensus 592 ~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iw~~~~~ 664 (1134)
..++|+|.-.. ++.+-.-|+ ..++|....+...++....+....-.-.|||||.+|+..-. .|.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 34778886644 444544444 67899998887777754443323344579999999987543 478999999876
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
.+.+.++..|-.. ..+..+.+|++.++....
T Consensus 151 fqrvgE~~t~GiG-------------------------------------------------pHev~lm~DGrtlvvanG 181 (366)
T COG3490 151 FQRVGEFSTHGIG-------------------------------------------------PHEVTLMADGRTLVVANG 181 (366)
T ss_pred cceecccccCCcC-------------------------------------------------cceeEEecCCcEEEEeCC
Confidence 5545444444221 112233344444333221
Q ss_pred -------------------CccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccccc
Q 001160 745 -------------------DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805 (1134)
Q Consensus 745 -------------------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~ 805 (1134)
-.+.+.|..+ ...+....+|...+...|..++..+||+.++.+--.|.- ..
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~at---G~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~-------~d 251 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAAT---GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR-------ND 251 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccc---cchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC-------cc
Confidence 1122222111 223334456655577788889998888855544332210 01
Q ss_pred CC-CCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCC
Q 001160 806 RN-PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPP 882 (1134)
Q Consensus 806 ~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~ 882 (1134)
.. ..+.......+...+....+... - ...|-+++.+.+..+++..+ .+...+||..++..+..-.- .
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~-------~-anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~ 321 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAA-------F-ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--P 321 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHH-------H-HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--c
Confidence 00 11111111112222222222111 1 45677899988888888777 56799999999988755331 1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
.+..++-.. + =+++.+.+|.+.++.
T Consensus 322 daaGva~~~--~-gf~vssg~G~~~~~s 346 (366)
T COG3490 322 DAAGVAAAK--G-GFAVSSGQGRIIFYS 346 (366)
T ss_pred ccccceecc--C-ceEEecCCceEEecc
Confidence 223333322 2 344466778888774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.047 Score=58.45 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=121.0
Q ss_pred EeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec---
Q 001160 847 ALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK--- 921 (1134)
Q Consensus 847 ~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~--- 921 (1134)
.|.++...|.-.. .+.|.-|+..+++. ..+..+. .+.++..-. .+..|++. +.-+++++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-Ccccceeec-CCCeEEEE--ccccEEEeccCCceeEEecccc
Confidence 4667777666555 68899999876643 3333222 334443333 33344433 3346777776665433221
Q ss_pred -Cc-ccceEEEEEecCCCEEEEEcC-----C----CcEEEEeCC-CcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 922 -GH-QNRITGLAFSPTLNALVSSGA-----D----AQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 922 -~h-~~~i~~l~~s~d~~~l~s~~~-----D----~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
+. ...-..+...|+|.+.++.-. . ..-.+|-+. .+.. .....++. ...+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence 11 123456778899988776544 1 112455554 2221 11111111 234789999999888
Q ss_pred EEE--ECCeEEEEeCCC---cce--eccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceeeecCCcccc
Q 001160 990 LVV--HESQISVYDSKL---ECS--RSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 990 ~~~--~d~~v~vwd~~~---~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
..+ ..+.|.-|+... ..- ..+.......+..-.++...+|.+-+++-.+| .|.+|+.+ |+++.++....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-- 254 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-- 254 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--
Confidence 875 447777776631 111 11111112245666778888888775555554 89999999 99998887542
Q ss_pred cccccCCCCccEEEeecCCCCCEEEE
Q 001160 1062 PTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..+.+++|--.+.+.|..
T Consensus 255 --------~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 255 --------KRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred --------CCCccceEeCCCcCEEEE
Confidence 345567775433444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0093 Score=70.17 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=106.6
Q ss_pred CceEEEEeccCCCEEEEEe-------CC--eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC--------
Q 001160 841 ESAACIALSKNDSYVMSAS-------GG--KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED-------- 903 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d-------- 903 (1134)
..+.+.++||||+.+|... |+ .|.+++... .......+ ...+.-.|+| +|..|++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4578899999999887664 32 466666532 33222332 2478899999 77777666432
Q ss_pred ----CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEE---EeCCCcccccceeeecCCCCCCCCcC
Q 001160 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCM---WSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 904 ----g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~i---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
+.+.+.+++.++... ...+.|..+.|||||..++... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2345799999999999888766 467776 343444311111111111111 23
Q ss_pred ceEEEECCCCcEEEEEECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001160 977 ETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 977 v~~~~fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
+..+.|..++.+++...+....+|.+ .+.....+ .......++.+|+-+++ .++....+|.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~ 561 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAV 561 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCce
Confidence 57899999999765544444445554 55443332 22223567888887763 3555556663
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=68.16 Aligned_cols=113 Identities=10% Similarity=0.140 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCcccccccchhhHHHHH
Q 001160 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKHFEDQVQAGEWDEVERYLCGFTKVEDNRYSMKIFFE 75 (1134)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~l~~~~~~~~~~~~~~~ 75 (1134)
+.+..+|..++...|+.+.+..|-+|+|...+ +.++-+++..|+-.-|++.+..-...-... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998762 678888999999999999887643221111 2248899
Q ss_pred HHHHHHHHHHhccCHH--HHHHHHHhccccccccCHHHHHHHHHhh
Q 001160 76 IRKQKYLEALDRQDRA--KAVEILVKDLKVFSSFNEELFKEITQLL 119 (1134)
Q Consensus 76 i~~~~~lEll~~~~~~--~A~~~l~~~~~~~~~~~~~~~~~l~~l~ 119 (1134)
|..+.|++++..|... +|+...|+.++|+...+..+.+.|-..+
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl 241 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL 241 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 9999999999999888 9999999999999766666666655543
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.035 Score=66.26 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=98.4
Q ss_pred CCcEEEEE-eCCCcEEEEEcCCceEEEEecCcccc-eEEEEEec-----CCCEEEEEcCCCcEEEEeCCCcccccceeee
Q 001160 893 DNNIIAIG-MEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSP-----TLNALVSSGADAQLCMWSIDKWEKLKSRFIQ 965 (1134)
Q Consensus 893 ~~~~lasg-~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~-----d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~ 965 (1134)
+.++|+.- .....|+-.|+..|+.+..+..|... |..++-.. +......|-.+..+..||..-... .++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence 44555443 35678999999999999999988764 55554321 122344566677899999875321 0111
Q ss_pred cCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
...........-++++-+.+|...+.+.+|.|++||-.+..-++..+ +...+|.+|..+.||++|++. .+..+.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILAT-CKTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEe-ecceEEEEE
Confidence 11101111245678888888877777889999999985544444433 447999999999999998755 477888887
Q ss_pred C
Q 001160 1046 A 1046 (1134)
Q Consensus 1046 ~ 1046 (1134)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.049 Score=60.06 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=103.4
Q ss_pred cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC----CCEEEEEeC---------C-CeEEEE
Q 001160 370 DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGVAFS---------K-HIVHLY 435 (1134)
Q Consensus 370 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd----g~~las~~~---------d-g~i~iw 435 (1134)
.|+|.|..+.+.+.+..+. -..+-..+..+.+..+ ..+|++|.. . |.|.++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~ 67 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVF 67 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEE
T ss_pred EEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEE
Confidence 5777777776655443221 0112222334444443 468887753 2 899999
Q ss_pred EcCCC----CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-eeEE-ecCCCCCeEEEEeeccC
Q 001160 436 TYNPT----GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYT-FEGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 436 d~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~~~-~~~h~~~v~~i~~~~~~ 509 (1134)
++... ..++.... ....++|++++-. .+ .|+.+. .+.|.+|++...+ .... +......+.++... +
T Consensus 68 ~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 68 EISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp EECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence 99884 23333222 2357889998876 33 333333 4789999998877 3332 21223356666553 3
Q ss_pred CccEEEEEecCCeEEEEEccCCCc-ee--EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGS-RV--DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
++++.|...+.+.++.++.... .. .......+++++.|-++++.++.+ |.++.+.++...
T Consensus 140 --~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~----D~~gnl~~l~~~ 202 (321)
T PF03178_consen 140 --NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG----DKDGNLFVLRYN 202 (321)
T ss_dssp --TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE----ETTSEEEEEEE-
T ss_pred --cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE----cCCCeEEEEEEC
Confidence 6899999989888886665333 22 223345578999998777766555 347778887654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.26 Score=55.88 Aligned_cols=176 Identities=12% Similarity=-0.044 Sum_probs=90.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc---ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL---RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+.|.++.|+.+.. |++...||.+++||+.+.... .......-....+.+..+..+|- .++++ ++.+.+-+-.
T Consensus 81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence 7899999998655 456669999999998743300 00001111112222333333442 33333 3444443321
Q ss_pred CCe-eeEEe---cCCC-----C-CeEE-EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 486 AGR-KQYTF---EGHE-----A-PVYS-VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 486 ~~~-~~~~~---~~h~-----~-~v~~-i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
... ..+.+ .+.. . .... ..+ ..+....+....++.+.+-+-..... ....+++..+++||+|+
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEe--ecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCC
Confidence 211 11111 1100 0 0111 112 22224555555556666443322111 11246899999999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
+++.... ++.+.+....-.+....+..........+.|..+
T Consensus 230 ~iAl~t~----~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTD----SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEEEC----CCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 9988763 6778888876666666666553334555666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=60.94 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+|+.+.|||++..|+..+|..|+++.-..+...+.+++++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s 103 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDA 103 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHH
Confidence 4444 9999999999999999999999999998877776668899999999999988888887666654 3455
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 104 ~~lL~~~L~~ 113 (133)
T cd08044 104 YSLLLRFLES 113 (133)
T ss_pred HHHHHHHHHH
Confidence 5677777766
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=1.1 Score=54.57 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=122.4
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-----CCcE
Q 001160 410 SVNRCVWGPDGLMLGVAFS-----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----DKMI 479 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i 479 (1134)
.+..+.|||||++||.+.. ...|++.|+.++..+.. .+.+ . -..++|++|++. ++++... ...|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCEE
Confidence 4777899999999998743 23688999988764321 1111 1 146999999985 3333222 2478
Q ss_pred EEEECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccC--CCceeEecCCCCcEEEEEECCC
Q 001160 480 KVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY--LGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 480 ~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+.+++.++ +....+........ +......++.+++..+. ++.+.+++... ......+.........+. ..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 278 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY- 278 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-
Confidence 88999888 33334443333333 22222334455554433 35688888533 222223333333333332 22
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCC
Q 001160 553 GTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADG 630 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 630 (1134)
+..+...+..+.....|...++. .++....+....+..+..+.+.. +..+++...+|.-+++-+.. +..+..+....
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 357 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIAFDD 357 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEecCCC
Confidence 23444333222223445555555 23322223332333677777773 33445555676655554432 22333333111
Q ss_pred CCCCcceEEEc--cCCC-EEEEEeC---CCcEEEEECCCc
Q 001160 631 GLPASPRLRFN--KEGS-LLAVTTS---DNGIKILANSDG 664 (1134)
Q Consensus 631 ~~~~v~~~~~s--~d~~-~l~~~~~---dg~i~iw~~~~~ 664 (1134)
. ..+..+.++ +++. ++++.++ -+.+..+|..++
T Consensus 358 ~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 358 P-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred C-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 1 112223344 3433 4443333 467888887765
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.2 Score=53.84 Aligned_cols=227 Identities=10% Similarity=0.072 Sum_probs=125.4
Q ss_pred ccCCCEEEEEeCCeEEEEECCC-CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE--------
Q 001160 849 SKNDSYVMSASGGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-------- 919 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-------- 919 (1134)
...++.|+.|.++.+.++++.. .+...... ...|..+...+ +-+.|++- .|+.++++++..-.....
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3467888888844499999933 33333332 33499999999 55555544 359999999876433321
Q ss_pred ------ecCcccceEEEE--EecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 920 ------LKGHQNRITGLA--FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 920 ------l~~h~~~i~~l~--~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
.......+...+ -...+...+.+.....|.+|.............+...- ...+..++|. ++.+++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l----p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL----PDPPSSIAFL--GNKICV 153 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc----CCCcEEEEEe--CCEEEE
Confidence 011222333333 11233333334445589988887632110001111111 1357888888 677888
Q ss_pred EECCeEEEEeCCCcceeccCCCCC----------CCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceee--ecCCcc
Q 001160 992 VHESQISVYDSKLECSRSWSPKDA----------LPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRC--RIGPSA 1059 (1134)
Q Consensus 992 ~~d~~v~vwd~~~~~~~~~~~~~~----------h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~--~~~~~~ 1059 (1134)
+..+...+.|++......+..... ...++..+.. +++.+|++- |..-.+.|. .|+... .+.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~--- 226 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ--- 226 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE---
Confidence 878888999994333333322111 1234444444 345666653 443344444 354333 222
Q ss_pred cccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcc
Q 001160 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1060 ~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~ 1104 (1134)
-...|.++++.. .+|+.-+. +.|-||++.+++.
T Consensus 227 --------W~~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 227 --------WSSAPQSVAYSS---PYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred --------cCCchhEEEEEC---CEEEEECC-CEEEEEECcCCcE
Confidence 124566677754 47776665 5599999999984
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.51 Score=50.26 Aligned_cols=160 Identities=12% Similarity=0.112 Sum_probs=83.1
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe-CCCc
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKW 956 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~ 956 (1134)
....+.+..+..++ +|++++++..-....-||--...-...-+.-..+|.+|.|+||+.+.+.+ ..+.|+.=+ ....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34456788899999 89999877555455577643211112222345789999999998876654 788888777 2222
Q ss_pred ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
+.-....... ......+..++|.+++...|++..+.+.+=.=.++.-..-.....-......|.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~----~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 219 ETWSEPIIPI----KTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EEE---B-TT----SS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred cccccccCCc----ccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 2111101111 11114578999999999999888886655333444444333323335678899998776666655
Q ss_pred cCCcEEEE
Q 001160 1037 CDGAIGVF 1044 (1134)
Q Consensus 1037 ~dg~I~vw 1044 (1134)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78876544
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.18 Score=55.52 Aligned_cols=218 Identities=11% Similarity=0.130 Sum_probs=118.4
Q ss_pred CeEEEEEcCCCCccceeeEEecccCCeeEEE---EecCC--CcEEEEEEcC----------CCcEEEEECCCC----eee
Q 001160 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIA---FAHPN--KQLCIVTCGD----------DKMIKVWDVVAG----RKQ 490 (1134)
Q Consensus 430 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~---~s~d~--~~~~l~sg~~----------d~~i~iwd~~~~----~~~ 490 (1134)
..|++.|..+.+.+. ...+.... .+.+++ |..+. +..+|+.|+. .|.|.++++.+. ..+
T Consensus 2 s~i~l~d~~~~~~~~-~~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLD-SFELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEE-EEEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEE-EEECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887777653 33454333 344443 33221 1226666642 288999999884 122
Q ss_pred EEe--cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--CCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 491 YTF--EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--PGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 491 ~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
..+ ....++|++++.. + .+|+. +..+.|.+|++...+....... ....+.++... +++++.+.. .
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~-~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~----~ 148 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---N-GRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA----M 148 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---T-TEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES----S
T ss_pred EEEEEEeecCcceEhhhh---C-CEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc----c
Confidence 221 2357889999864 2 34443 3458999999988772222221 22255555544 557777743 3
Q ss_pred CcEEEE--eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-------C--eeEEEEeCCCCCCCc
Q 001160 567 SHLVEW--NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-------M--NMLTTVDADGGLPAS 635 (1134)
Q Consensus 567 ~~i~~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~~v 635 (1134)
..+.++ +....+....-+......+.++.|-++++.++++..+|.+.++.... + +.......+-+ ..|
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v 227 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG-DIV 227 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-E
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC-Ccc
Confidence 345555 54333233222222233688888886777999999999999998762 2 22322233322 245
Q ss_pred ceE---EEcc--CC------CEEEEEeCCCcEEEEEC
Q 001160 636 PRL---RFNK--EG------SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 636 ~~~---~~s~--d~------~~l~~~~~dg~i~iw~~ 661 (1134)
+++ .+.| .+ ..++.++.+|.|.+.-.
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 666 4444 12 24888889999985443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=1.8 Score=52.85 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=122.7
Q ss_pred CeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.+..+.+||||++++.+-+.+| .|++-|+.+|..+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4778899999996555555444 688889988764321 0111 11469999999977
Q ss_pred EEEeCC------CeEEEEEcCCCCccceeeEEecccCCee-EEEEecCCCcEEEEEE-cCCCcEEEEECC--CCeeeEEe
Q 001160 424 GVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVN-DIAFAHPNKQLCIVTC-GDDKMIKVWDVV--AGRKQYTF 493 (1134)
Q Consensus 424 as~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~sg-~~d~~i~iwd~~--~~~~~~~~ 493 (1134)
+....+ ..|..+++.++..-. ...+........ .+..+.|++.+++.+. ..++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d-~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQD-ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHC-eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 776442 368888888773211 112333233333 3333447775332222 234578888843 34422222
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccC-CCceeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDY-LGSRVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~-~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
..-.+....+. +. .+ .+++.... ...|...++.. .+....+... ...+..+.+. ++.|+.... .++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence 21222222222 22 22 23333222 22344444442 2222333332 3467777776 445554432 134555
Q ss_pred EEEEeCCCCeeEEEec-CccCcceEEEEEe--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 001160 569 LVEWNESEGAIKRTYS-GFRKRSLGVVQFD--TTRN-RFLAAG---DEFQIKFWDMDNMN 621 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 621 (1134)
+++++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7777765433 33333 1111 23333344 3443 343332 45788888988764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=43.67 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=34.9
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0042 Score=69.05 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=78.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceE-EEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-FLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
...+.-+.|+|.-.++|++. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55688899999999999998 8999999998 888899987888877 999999 8999999999999999999998776
Q ss_pred EEe-cCcccceEEEEEe
Q 001160 918 TKL-KGHQNRITGLAFS 933 (1134)
Q Consensus 918 ~~l-~~h~~~i~~l~~s 933 (1134)
..+ ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 652 2234567777775
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.35 Score=49.62 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=121.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CC--eEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 840 EESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-.. ----.++... +++....-.++...+||..+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccce
Confidence 34455688888888887776 44 69999999998876654222 1223455543 4555556678999999999999
Q ss_pred EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
.+.++.- .+.=+.|+ .|++.|+.......+.++|.++.+....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~---------------------------------- 164 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT---------------------------------- 164 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----------------------------------
Confidence 9988863 45667787 4677777666677799999887553221
Q ss_pred eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccccc-----CCCC
Q 001160 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAV-----SNTA 1070 (1134)
Q Consensus 996 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~~ 1070 (1134)
|.|.+ .+.. -..+.-+-|- +|...|=.=....|...|..+|+....+......+.... ....
T Consensus 165 -i~V~~-~g~p----------v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 165 -IQVTD-NGRP----------VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp -EE-EE-TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS
T ss_pred -EEEEE-CCEE----------CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCC
Confidence 11111 0111 1234444443 677666666777888899999998887776544432110 1122
Q ss_pred ccEEEeecCCCCCEEEEEeCCCcE
Q 001160 1071 HPLVIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
-.-.+||+|..+++++||=.=-.+
T Consensus 232 VLNGIAyd~~~~~l~vTGK~Wp~l 255 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGKLWPKL 255 (264)
T ss_dssp -EEEEEEETTTTEEEEEETT-SEE
T ss_pred eeEeEeEeCCCCEEEEEeCCCCce
Confidence 334899999887888887544433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0044 Score=68.85 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=77.5
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE-EEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
..|.-+.|+| .-.++|++..+|.|-+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4578899999 88999999999999999987 788889887877777 99999999999999999999999999988655
Q ss_pred ceeeecCCCCCCCCcCceEEEEC
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.+.... ...|..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 431111 1456777776
|
|
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0024 Score=59.73 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|.||+|+..|+..+|..|+++....+...+.+++++|..+....++.+++....++. .+.+
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s 114 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDS 114 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHH
Confidence 4444 9999999999999999999999999999888787767788999988887777766665554443 2444
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 115 ~~lL~~fL~~ 124 (142)
T PF04494_consen 115 FSLLLQFLQE 124 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4566666655
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.75 Score=51.24 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC-----------------CEE
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR-----------------NRF 603 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l 603 (1134)
...+.+++.+|++++.++. |.-|+|.++|+.++..++.++|..+..+.-+.....+ .+|
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877764 4688999999999999999999877444333322221 122
Q ss_pred -EEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 604 -LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 604 -~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
+-+-.-|.|.||.+.+|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 2366789999999999888877764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.74 E-value=2.3 Score=51.89 Aligned_cols=197 Identities=13% Similarity=0.129 Sum_probs=115.0
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC--------eEEEEeec--------------cCCccEEEEEecCCeEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP--------VYSVCPHH--------------KESIQFIFSTAIDGKIKAW 526 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~~~d~~i~~w 526 (1134)
.++.++.++.|.-.|..+|+.+.++...... ...+++.. ...+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666777788888888888877766432110 11222211 1123578889999999999
Q ss_pred EccCCCceeEecCCCC------------cEEEEEECC--CCCEEEEEeeCCC------CCCcEEEEeCCCCeeEEEecCc
Q 001160 527 LYDYLGSRVDYDAPGN------------WCTMMAYSA--DGTRLFSCGTSKE------GESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 527 d~~~~~~~~~~~~~~~------------~v~~~~~s~--~~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|.++++....+..... ....+.-.| .+..+++++...| .++.|+-+|.++|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9998888765532211 001111122 1345555543222 2678999999999988776521
Q ss_pred c---------C-------cce-EEEEEeCCCCEEEEEe------------------CCCeEEEEECCCCeeEEEEeCCCC
Q 001160 587 R---------K-------RSL-GVVQFDTTRNRFLAAG------------------DEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 587 ~---------~-------~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
. . ..+ ...++++....++.+. ..+.|.-.|.++|+..-.++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 001 2345555554444421 235677788888888776654221
Q ss_pred C-------CCcceEEEcc-CCC---EEEEEeCCCcEEEEECCCch
Q 001160 632 L-------PASPRLRFNK-EGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 632 ~-------~~v~~~~~s~-d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
. ....-+.+.. +|+ .++.++.+|.+.++|.++|+
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 0 0111122333 563 78899999999999999994
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.38 Score=51.64 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=133.9
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg 430 (1134)
+..|.|+...++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEc-cc
Confidence 345677877677777778899999988764321 1 1333445555555555555553 33
Q ss_pred eEEEEEcCCCCccceeeEEe-cc-cCCeeEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCeeeEEecCC
Q 001160 431 IVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~sg~~d------------~~i~iwd~~~~~~~~~~~~h 496 (1134)
+.+++.+++.......... +. ...-+.+...|+|. +.+ ++.. |.|+..|. .+..++.+..+
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~ 161 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDD 161 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCc
Confidence 6677766554422221111 11 23567888899997 333 3322 23444443 56666666666
Q ss_pred CCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccC-----CCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 497 EAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDY-----LGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
-..-+.++|+|++ +.+..+ +..+.|.-|++.. ... ...+....+..-.++...+|.+-+++.. +.+.
T Consensus 162 ~~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~ 236 (307)
T COG3386 162 LTIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGR 236 (307)
T ss_pred EEecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCce
Confidence 6667889998876 455444 5568888887762 111 1223334455667778888888764432 2237
Q ss_pred EEEEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEe
Q 001160 569 LVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1134)
|.+|+.. |+.+..+..... .+.+++|- ++.+.|+..+
T Consensus 237 v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9999988 999988888754 67777775 3445555443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.39 Score=52.45 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=106.5
Q ss_pred CCcceEEee-ccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--
Q 001160 783 SGLSLLALA-SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-- 859 (1134)
Q Consensus 783 ~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-- 859 (1134)
+.++|++.+ .++.|.|.|..+....|.-..+. ..+.+... .+ -.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvI----------e~~ev~~k-~g----~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVI----------EPEEVFEK-TG----LSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-----------HHHHHHH-H-----EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeee----------CHHHHHhh-cC----CCCCceeeecCCccEEEEeccC
Confidence 456676666 56889999987654433221110 00000000 00 11222344457998888762
Q ss_pred -C----CeEEEEECCCCeEEEEecCCC---CceEEEEEcCCCCcEEEEEe--------------------CCCcEEEEEc
Q 001160 860 -G----GKVSLFNMMTFKVMTMFMSPP---PAATFLAFHPQDNNIIAIGM--------------------EDSSVQIYNV 911 (1134)
Q Consensus 860 -d----g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~~~~~lasg~--------------------~dg~i~iwd~ 911 (1134)
+ |.+.++|-++.+......... .--..+-|.| ..+.+++.. .-.++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 2 569999999888887765422 2345677788 777777654 2357999999
Q ss_pred CCceEEEEecCcc--cceEEEEEecC--CCEE-EEEcCCCcEEEE-eCCCcccccceeeecCCCCC----CC--------
Q 001160 912 RVDEVKTKLKGHQ--NRITGLAFSPT--LNAL-VSSGADAQLCMW-SIDKWEKLKSRFIQAPAGRQ----SP-------- 973 (1134)
Q Consensus 912 ~~~~~~~~l~~h~--~~i~~l~~s~d--~~~l-~s~~~D~~i~iW-d~~~~~~~~~~~~~~~~~~~----~~-------- 973 (1134)
.+.+.++++.--. .....|.|..| ..+= +.+--.++|..| .-+.++-....++..+.... .+
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999999886432 23556777654 3332 222233344444 33444433333333322110 00
Q ss_pred -CcCceEEEECCCCcEEEEE--ECCeEEEEeC----CCcceeccCCC-------------CCCCCCeEEEEEccCCCEEE
Q 001160 974 -LVGETKVQFHNDQTHLLVV--HESQISVYDS----KLECSRSWSPK-------------DALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 974 -~~~v~~~~fspdg~~l~~~--~d~~v~vwd~----~~~~~~~~~~~-------------~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
..-++.+..|.|.++|.++ ..|.|+.||+ +.+...+...+ ..-.+...-+..|-||++|+
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 1347899999999999996 5899999999 23333221111 11123447788999999988
Q ss_pred EEe
Q 001160 1034 AGF 1036 (1134)
Q Consensus 1034 ~~~ 1036 (1134)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.043 Score=59.93 Aligned_cols=144 Identities=11% Similarity=0.117 Sum_probs=98.9
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-----EEEecCCeEEEEEccCCCc-ee-Eec
Q 001160 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-----FSTAIDGKIKAWLYDYLGS-RV-DYD 538 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~~~d~~i~~wd~~~~~~-~~-~~~ 538 (1134)
..+++.++.....++-.|++.|+.+.+++-|.. |.-+.+.|+..+..+ +.|-.|+.|.-||.+-... .. ...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 344677788888899999999999999887766 777777776554433 4466788899999885444 11 111
Q ss_pred C----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEE
Q 001160 539 A----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 539 ~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
. ......|.+-..+| ++++++. +|-|++||--.......+++..+ +|..+..+.+|+++++.+. ..+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLlL 496 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLLL 496 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEEE
Confidence 1 22356677766666 5666664 66699999743344445666665 8999999999999887654 44555
Q ss_pred EEC
Q 001160 615 WDM 617 (1134)
Q Consensus 615 wd~ 617 (1134)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.45 Score=48.74 Aligned_cols=175 Identities=10% Similarity=0.138 Sum_probs=111.0
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe--cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.+....+.+++|+| +.+.|.+......-.||=..+|+.+.++ .+..+ --++.+..++++.++--+++.+.+..++.
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 44455699999999 7777777777777777766788888875 34333 35788888999988888899999988876
Q ss_pred cccccce-eeecCCCCC-CCCcCceEEEECCCCcEEEEEECC-eEEEEeCC--CcceeccCCCCCC-------CCCeEEE
Q 001160 956 WEKLKSR-FIQAPAGRQ-SPLVGETKVQFHNDQTHLLVVHES-QISVYDSK--LECSRSWSPKDAL-------PAPISSA 1023 (1134)
Q Consensus 956 ~~~~~~~-~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~~d~-~v~vwd~~--~~~~~~~~~~~~h-------~~~v~~v 1023 (1134)
....... ....+-+.. ....+--.++|.|.++.|.++.++ -+.+|.++ ...+.. .....+ -..|.++
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~-~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV-HASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc-ccccCcccccceEeeccccc
Confidence 5322111 111111111 112456789999999999987654 35555552 111111 001111 2356777
Q ss_pred EEcc-CCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 1024 IYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1024 ~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.|.+ .+.+|+.+.+++.+...|... +.+..+.
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 7875 466778888888888888774 4454443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.046 Score=65.22 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC-eEEEEeecc---CCccEEEEEecCCeEEEEEccCCCceeEe----
Q 001160 466 KQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHK---ESIQFIFSTAIDGKIKAWLYDYLGSRVDY---- 537 (1134)
Q Consensus 466 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---- 537 (1134)
+.++|........|+-.|++.|+.+..+..|... |..++-... -...-.+.|-.++.+..||.+..+.....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3334445556789999999999999999887654 666653211 01234667778889999999876532211
Q ss_pred -cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 538 -DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 538 -~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
-......+|++-+.+|. ||+|+. +|.|++||--..+....+.+-.. +|..+..+.||+++++.+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 12344678888888874 555553 77799999543333344555555 9999999999999888764 4566666
Q ss_pred C
Q 001160 617 M 617 (1134)
Q Consensus 617 ~ 617 (1134)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.27 Score=51.58 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=95.7
Q ss_pred CceEEEEeccCCCEEEEEe--CCe--EEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE-cCCce
Q 001160 841 ESAACIALSKNDSYVMSAS--GGK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN-VRVDE 915 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd-~~~~~ 915 (1134)
..+.+.++|+||+.+|... ++. +.++... ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999888765 444 5555443 3333322 233788889999 687777777677777774 33333
Q ss_pred EEE-Ee--cCcccceEEEEEecCCCEEEEEc---CCCcEEEEeCCCcccccceeeecCCCCC-CCCcCceEEEECCCCcE
Q 001160 916 VKT-KL--KGHQNRITGLAFSPTLNALVSSG---ADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTH 988 (1134)
Q Consensus 916 ~~~-~l--~~h~~~i~~l~~s~d~~~l~s~~---~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~ 988 (1134)
... .+ ..-.+.|+++.+||||..+|... .++.|.+=-+.....-....+..+.... .....+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 12 11112899999999999887665 3567777665432221111111111000 11146889999999998
Q ss_pred EEEE--ECCeEEE-EeCCCcce
Q 001160 989 LLVV--HESQISV-YDSKLECS 1007 (1134)
Q Consensus 989 l~~~--~d~~v~v-wd~~~~~~ 1007 (1134)
++.+ .+..+.. ....+...
T Consensus 180 ~V~~~~~~~~~~~~v~~dG~~~ 201 (253)
T PF10647_consen 180 VVLGRSAGGPVVRLVSVDGGPS 201 (253)
T ss_pred EEEeCCCCCceeEEEEccCCcc
Confidence 8874 3343333 44444433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=54.62 Aligned_cols=148 Identities=18% Similarity=0.108 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcEEEEEe-CC--CcEEEEEcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEe-CCCcc
Q 001160 883 AATFLAFHPQDNNIIAIGM-ED--SSVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWS-IDKWE 957 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~-~d--g~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd-~~~~~ 957 (1134)
.+.+.++|+ +++.+|... .+ ..++++.. +..... +.+ ..++...|++++...+....+...+++. ..+++
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 677666554 23 34555543 332233 233 3688899999988877777677777774 33333
Q ss_pred cccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE----CCeEEEEeC----CC--cce-eccCCCCCCCCCeEEEEEc
Q 001160 958 KLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH----ESQISVYDS----KL--ECS-RSWSPKDALPAPISSAIYS 1026 (1134)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~----d~~v~vwd~----~~--~~~-~~~~~~~~h~~~v~~v~~s 1026 (1134)
.. ...+...... ..|..+.+||||.++|... ++.|.+--+ .+ ..+ ............++.++|.
T Consensus 100 ~~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GE-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ce-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 21 1111111110 1689999999999999843 677777655 22 011 1111111225689999999
Q ss_pred cCCCEEEEEecCCc
Q 001160 1027 CDGLLVYAGFCDGA 1040 (1134)
Q Consensus 1027 ~dg~~l~~~~~dg~ 1040 (1134)
+++.+++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998776665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.17 Score=59.90 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=125.3
Q ss_pred CCCCEEEEEeCC------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001160 418 PDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1134)
Q Consensus 418 pdg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~ 485 (1134)
..+..++.|+.+ ..+..||..++.... ...+. +...-.+++... +. +.++||.| .++..||..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCC
Confidence 345566677665 368888888763321 11222 222233444443 44 77888888 367788888
Q ss_pred CCeeeE--EecC--CCCCeEEEEeeccCCccEEEEEecCCe-----EEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 486 AGRKQY--TFEG--HEAPVYSVCPHHKESIQFIFSTAIDGK-----IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 486 ~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
+++... .+.. +...+..+ +|.+.++|+.||. +..||..+.+-...-......-..-...-+|...
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred CCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 776443 1111 11122222 4478888988865 7778777655433322222212222223466677
Q ss_pred EEEeeCCCCC--CcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCC
Q 001160 557 FSCGTSKEGE--SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 557 ~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~ 629 (1134)
++||.++..+ ..+..||..+++....-.......-..++. -++...+.||.|+ +|..||..+.+....-...
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 7777554432 578899998877544333222211122322 2456667777665 3778888877655443222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCC-----cEEEEECCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~ 664 (1134)
.....+..+ .-++...++|+.|| +|..||..++
T Consensus 511 ~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 511 SPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 221122222 23567777888775 5666666554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.60 E-value=1 Score=50.67 Aligned_cols=153 Identities=11% Similarity=0.046 Sum_probs=88.2
Q ss_pred CCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCC--ccEEEEEecCCeEEEEEcc
Q 001160 454 GGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES--IQFIFSTAIDGKIKAWLYD 529 (1134)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~~~l~s~~~d~~i~~wd~~ 529 (1134)
.+|..++|. ||++ .+.|.- .+|.+++=| .+.+ |.-..|..+.|.|... ...+++.-..+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478889995 6775 455432 233332222 1222 3344588899987532 2367788889999999875
Q ss_pred CC-----CceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC
Q 001160 530 YL-----GSRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT 599 (1134)
Q Consensus 530 ~~-----~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 599 (1134)
.. +.......+-. --..+.|+|....|++-.. ...-.+++++.........-...+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 22 11111111110 2246789999888876653 2222445554332222222233448999999999
Q ss_pred CCEEEEE-eCCCeEEEEECCC
Q 001160 600 RNRFLAA-GDEFQIKFWDMDN 619 (1134)
Q Consensus 600 ~~~l~~~-~~dg~i~iwd~~~ 619 (1134)
|++|+++ |..=.-++||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 9988774 3444568888653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0064 Score=41.66 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=34.0
Q ss_pred CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 871 ~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
+++...+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778889999999999 779999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.28 Score=54.56 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=57.9
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCc-eEEEEEcCCCC----------------c-EEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDN----------------N-IIAIG 900 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~----------------~-~lasg 900 (1134)
...+.+++.+|++++.|+.+ -|.|.++|+.++..++.++|..+. +.-+....... . +++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 56689999999999888876 499999999999888888775443 22221111011 1 34445
Q ss_pred eCCCcEEEEEcCCceEEEEec
Q 001160 901 MEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
-.-|.|.||.+..|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 677899999998887766654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.2 Score=43.41 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=66.6
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 411 VNRCVWGP---DG-LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 411 V~~i~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
|+++++.. || +.|++|+.|..|++|+-+. .+. ++. -.+.|+++.-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 56666655 33 5899999999999999553 222 333 34568888777765 5899999999999983
Q ss_pred CeeeEEecCCCCCeEEEE-eeccCCc-cEEEEEecCCeEE
Q 001160 487 GRKQYTFEGHEAPVYSVC-PHHKESI-QFIFSTAIDGKIK 524 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~-~~~~~~~-~~l~s~~~d~~i~ 524 (1134)
...+...+.... +.+++ +..++|| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 233344443333 55554 4344443 3578887777764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.4 Score=48.54 Aligned_cols=243 Identities=16% Similarity=0.167 Sum_probs=119.7
Q ss_pred eEEEEeccCCCEEEEEeCCeEEEEECCCCeE---EEEec----CCCCceEEEEEcCC---CCcEEEEEeCC--------C
Q 001160 843 AACIALSKNDSYVMSASGGKVSLFNMMTFKV---MTMFM----SPPPAATFLAFHPQ---DNNIIAIGMED--------S 904 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~lasg~~d--------g 904 (1134)
.++|+|.|||+++++-..|.|++++ ..+.. +..+. ........++|+|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999988876689999999 44443 22331 23345789999992 24444433321 2
Q ss_pred cEEEEEcCCc-------eEE-EEecC---cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeec-CCCC--
Q 001160 905 SVQIYNVRVD-------EVK-TKLKG---HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA-PAGR-- 970 (1134)
Q Consensus 905 ~i~iwd~~~~-------~~~-~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~-~~~~-- 970 (1134)
.|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+. --..+........+++. ..+.
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccccccccceEEEecccCcCC
Confidence 3444444332 111 12222 1223456999999988888775443 00000000001111111 1110
Q ss_pred -----------C-----CCCcCceEEEECCC-CcEEEE--EECC--eEEEEeC---------CC-cc-----eeccCCC-
Q 001160 971 -----------Q-----SPLVGETKVQFHND-QTHLLV--VHES--QISVYDS---------KL-EC-----SRSWSPK- 1013 (1134)
Q Consensus 971 -----------~-----~~~~~v~~~~fspd-g~~l~~--~~d~--~v~vwd~---------~~-~~-----~~~~~~~- 1013 (1134)
. ........++|.|. |+++++ +.+. .|.+-.. .+ .. .......
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 0 01134568999999 777776 3333 2333211 00 00 0000000
Q ss_pred --------CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeec
Q 001160 1014 --------DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPH 1078 (1134)
Q Consensus 1014 --------~~h~~~v~~v~~s~-------dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1134)
..+...++.+.|-. +|.++++.-..+.|....++.+..+..... .. ......++.+++.
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~----~~~~~r~~~v~~~ 314 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL----GGFGGRPRDVAQG 314 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC----TTSSS-EEEEEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc----ccCCCCceEEEEc
Confidence 01235667777753 455677666667788888775533322110 00 1122367889999
Q ss_pred CCCCCEEEEEeCCCcEE
Q 001160 1079 PSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1079 ~~d~~~l~s~~~Dg~v~ 1095 (1134)
| ||.++++.+.+|.|.
T Consensus 315 p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 315 P-DGALYVSDDSDGKIY 330 (331)
T ss_dssp T-TSEEEEEE-TTTTEE
T ss_pred C-CCeEEEEECCCCeEe
Confidence 9 889999888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.081 Score=59.00 Aligned_cols=157 Identities=14% Similarity=0.184 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCCcEEEEEe--CCCcEEEEEcCCceEEEEecCcccceEEEEEecC----CCEEEEEcCCCcEEEEeCCC
Q 001160 882 PAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT----LNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d----~~~l~s~~~D~~i~iWd~~~ 955 (1134)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|. .|.+++|+|- -..|........|.||.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788999985 555555542 334443322 23344444 4899999985 33555666778899999863
Q ss_pred c--ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeE-EEEeC--CCcceeccCCCCCCCCCeEEEEEccCCC
Q 001160 956 W--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI-SVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL 1030 (1134)
Q Consensus 956 ~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v-~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~ 1030 (1134)
. +..+..+-+.-+-......-...+.|+|....|++-....+ .++++ +...++.=... .+.|.|.+|.+||+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---SGLIHCACWTKDGQ 168 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---CceEEEEEecCcCC
Confidence 2 21111111111110111123467899999999998433333 44555 33333322222 68899999999999
Q ss_pred EEEEEe-cCCcEEEEeCCCc
Q 001160 1031 LVYAGF-CDGAIGVFDAETL 1049 (1134)
Q Consensus 1031 ~l~~~~-~dg~I~vwd~~~~ 1049 (1134)
+|+++- ..=.-++||-...
T Consensus 169 RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEEeCCeEEEEEecCchh
Confidence 876543 3345788986654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.073 Score=58.28 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=97.8
Q ss_pred EEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC--EE-----EEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 896 IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN--AL-----VSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 896 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~--~l-----~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
+|.++.....++-.|++.|+.+..+.-|.+ |.-+.+.||.+ .| +.|-.|..|.-||..-...- .+....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 445566667899999999999999998777 77788888753 12 23446778999998743221 122222
Q ss_pred CCCC-CCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 969 GRQS-PLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 969 ~~~~-~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
+|.- ....-.|.+-.-+|..++.+.+|.|++||-.+..-++..+ +...+|+.|..+.||++++.. .+..+.+-+..
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlP--gLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALP--GLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccc--ccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence 2221 1133456666667766666889999999985555554443 347899999999999988754 46677776653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.28 Score=58.22 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=114.5
Q ss_pred eEEEEECCCCeEE--EEecCCCCceEEEEEcCCCCcEEEEEeCC------CcEEEEEcCCceE--EEEecCcccceEEEE
Q 001160 862 KVSLFNMMTFKVM--TMFMSPPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEV--KTKLKGHQNRITGLA 931 (1134)
Q Consensus 862 ~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~lasg~~d------g~i~iwd~~~~~~--~~~l~~h~~~i~~l~ 931 (1134)
.+..||..+.+-. ..+...... .+++. - ++.+.++|+.+ ..+..||..+++- +..+....... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-
Confidence 4677887765422 122211111 22333 2 67788888854 3477888776642 22222111111 22
Q ss_pred EecCCCEEEEEcCCC-----cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-C-----------
Q 001160 932 FSPTLNALVSSGADA-----QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E----------- 994 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~-----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d----------- 994 (1134)
..-+|++.+.||.++ ++..||..+.+-.. +....... .....+ .-+|+..++|+ +
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~---~~~mp~~r---~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM---LPDMPIAL---SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE---CCCCCccc---ccccEE--EECCEEEEEeCCCccccccccccc
Confidence 234778888888764 47889988755322 11111110 111122 23677666643 2
Q ss_pred ------------CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-ccee--e
Q 001160 995 ------------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD------GAIGVFDAET-LRFR--C 1053 (1134)
Q Consensus 995 ------------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d------g~I~vwd~~~-~~~~--~ 1053 (1134)
..+..||...+......+.. ......-+..-+|+..+.|+.+ ..+..||..+ .+-. .
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 34788998554443333221 1112222234567777777754 2467788887 4322 2
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC--cEEEEecCCCccccCCCCCCCCCC
Q 001160 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG--AVHVVEPSDAELKWGGTPSQDNGP 1116 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1116 (1134)
.+... ....+++.. ++.+.++|+.|| ++-.+|+.+.+ |..-.|.+..+
T Consensus 498 ~m~~~-----------r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~ 547 (557)
T PHA02713 498 TTESR-----------LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNS 547 (557)
T ss_pred ccCcc-----------cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCc
Confidence 22111 111122222 678999999998 77778877655 77666554433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.29 E-value=2.4 Score=46.71 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=39.7
Q ss_pred ceEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeeEE-EEeCCCCC-CCcceEEEccCCCEEEEEeCCCcEE
Q 001160 590 SLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLT-TVDADGGL-PASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 590 ~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.+..+.|.. .|.++++.-..+.|....++.+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455555653 33455555556788888876543332 22211222 2678999999999888888788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.2 Score=46.85 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=108.7
Q ss_pred ceEEEEec--C-CCCeeEEEEe-----------cCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccc
Q 001160 337 KTVVRTLN--Q-GSNVMSMDFH-----------PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 337 ~~~~~~l~--h-~~~V~~v~~s-----------pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
++++..+. + .++....-|+ .+.++|++-|-.++.|.|.|+.+.....+ +.++.... .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~----l~KvIe~~-----e 122 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR----LHKVIEPE-----E 122 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E----EEEEE-HH-----H
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc----eEeeeCHH-----H
Confidence 45566554 3 3566666665 23445555555788999999986432211 11110000 0
Q ss_pred ccc-cCCcCeEEEEEcCCCCEEEEE--e----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-
Q 001160 403 LLN-DAAISVNRCVWGPDGLMLGVA--F----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG- 474 (1134)
Q Consensus 403 ~l~-~h~~~V~~i~~spdg~~las~--~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~- 474 (1134)
+.. ..-..-..+---|+|..++++ . ..|-+.+.|-++.+.......-.+...--....|.|..+ .++|..
T Consensus 123 v~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeW 200 (461)
T PF05694_consen 123 VFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEW 200 (461)
T ss_dssp HHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B-
T ss_pred HHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEecc
Confidence 000 000111122233688888875 2 234677888776544332111111123346677778666 677654
Q ss_pred -------------------CCCcEEEEECCCCeeeEEecCCC--CCeEEEEeeccCCccE-EEEEecCCeEEEEEc-cCC
Q 001160 475 -------------------DDKMIKVWDVVAGRKQYTFEGHE--APVYSVCPHHKESIQF-IFSTAIDGKIKAWLY-DYL 531 (1134)
Q Consensus 475 -------------------~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~-l~s~~~d~~i~~wd~-~~~ 531 (1134)
...++.+||+.+.+.++++.--. ....-+.|..+++..+ ++.+....+|..|-- +.+
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 24589999999999999886432 2345566665544333 333444555555533 222
Q ss_pred Cc----eeEecCC-----------------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEec-Cc
Q 001160 532 GS----RVDYDAP-----------------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYS-GF 586 (1134)
Q Consensus 532 ~~----~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~-~~ 586 (1134)
+- +..+... ..-|+.+.+|.|.++|..+.- ..|.|+.||+.+.. ++.+.. +.
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W---~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW---LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET---TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc---cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 11 1122111 235789999999999998763 67889999997632 222211 10
Q ss_pred c--------------CcceEEEEEeCCCCEEEEEe
Q 001160 587 R--------------KRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 587 ~--------------~~~v~~~~~~~~~~~l~~~~ 607 (1134)
. .+...-+..|.||++|+...
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 00224577788888777653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.24 Score=58.81 Aligned_cols=190 Identities=7% Similarity=0.016 Sum_probs=96.2
Q ss_pred CCCcEEEEEEcCC------CcEEEEECCCCeeeE--EecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccC
Q 001160 464 PNKQLCIVTCGDD------KMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDY 530 (1134)
Q Consensus 464 d~~~~~l~sg~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~ 530 (1134)
++. +.+.||.+ ..+..||+.+..... .+.........+.+ +|...+.|+.++ ++..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 454 56666643 357788887765421 11111111112221 336777777654 478898876
Q ss_pred CCceeEecCCC--CcEEEEEECCCCCEEEEEeeCCCC-------------------CCcEEEEeCCCCeeEEEecCccCc
Q 001160 531 LGSRVDYDAPG--NWCTMMAYSADGTRLFSCGTSKEG-------------------ESHLVEWNESEGAIKRTYSGFRKR 589 (1134)
Q Consensus 531 ~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1134)
.+-...-.... .....+ .-+|+..+.||.+... -..+..||+.+.+....-.....
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 54332111111 111122 2356666666643210 24588899887765432221111
Q ss_pred ceEEEEEeCCCCEEEEEeCC------CeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC--cEEEEE
Q 001160 590 SLGVVQFDTTRNRFLAAGDE------FQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN--GIKILA 660 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg--~i~iw~ 660 (1134)
........-+++..+.||.+ ..+..||..+ .+-...............++ -+|++.++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence 11111122345666667643 2467899887 44332222221111222222 3688888999888 788888
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
..+.
T Consensus 532 ~~~~ 535 (557)
T PHA02713 532 VYTY 535 (557)
T ss_pred cccc
Confidence 8776
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.92 Score=55.26 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=120.1
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCc--------eEEEEEcC---------------CCCcEEEEEeCCCcEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPA--------ATFLAFHP---------------QDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~lasg~~dg~i~i 908 (1134)
..+.+++ ++.|.-.|..+|+.+.++...... ...+++.. .++..|+.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 3444444 788999999999988887643211 22344421 02347778999999999
Q ss_pred EEcCCceEEEEecCcccce-------------EEEEEec--CCCEEEEEcC----------CCcEEEEeCCCccccccee
Q 001160 909 YNVRVDEVKTKLKGHQNRI-------------TGLAFSP--TLNALVSSGA----------DAQLCMWSIDKWEKLKSRF 963 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i-------------~~l~~s~--d~~~l~s~~~----------D~~i~iWd~~~~~~~~~~~ 963 (1134)
.|.++|+.+..+.. .+.| ..+.-+| .+..++.++. +|.|+-+|+.+|+.+-..-
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998877642 1211 0111112 1334555532 6889999999999654332
Q ss_pred eecCCCCCCCCcCceEEEECCCCcEEEEEECC--eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001160 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVVHES--QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1134)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~--~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I 1041 (1134)
...+.... . -++|.....+..+ ....+|.+...+-. . .+... ..+-...+........++|
T Consensus 354 ~g~p~~~~-----~-----~~~g~~~~~gg~n~W~~~s~D~~~glvy~--p-tGn~~----pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 354 PGNPDPTA-----P-----PAPGETYTRNTPNSWSVASYDEKLGLVYL--P-MGNQT----PDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred cCCCCccc-----C-----CCCCCEeccCCCCccCceEEcCCCCeEEE--e-CCCcc----ccccCCccccCcccccceE
Confidence 21111100 0 0122221111111 12223332222110 0 00000 0010001101111235567
Q ss_pred EEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC---EEEEEeCCCcEEEEecCCCccccCCCC
Q 001160 1042 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN---QIALGMSDGAVHVVEPSDAELKWGGTP 1110 (1134)
Q Consensus 1042 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1110 (1134)
.-.|++||+..-.++.... ..-.-.....++-+.....+|+ .++.++++|.+++.|..+++..|..+.
T Consensus 417 vALD~~TGk~~W~~Q~~~h-D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHH-DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEEeCCCCceEEEecccCC-ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 7788888888766553110 0000001111222222211443 888999999999999999998887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.14 E-value=3.1 Score=46.62 Aligned_cols=283 Identities=14% Similarity=0.178 Sum_probs=150.7
Q ss_pred CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-----CCCEEEEE
Q 001160 784 GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMSA 858 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-----dg~~la~~ 858 (1134)
...+++|+..|.++||+.......+. ..+++..+ ..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~l------~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQL------KDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEec------CCcEEEEEeccccCCCCcceEEEe
Confidence 35688899999999998643332221 11222212 45566555432 34466666
Q ss_pred eCCeEEEEECCC--Ce-------EEEEecCCCCc--eEEEEEcCC----CCcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 859 SGGKVSLFNMMT--FK-------VMTMFMSPPPA--ATFLAFHPQ----DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 859 sdg~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~s~~----~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
...++.||.+.. +. .+..+..|.-. ...++.-|. +..+|.+-+.||.+.+|+-+.......+..
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 12222223222 222333221 246889999999999999765544444443
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc--------------------ccccceeeecCCCCCCCCcCceEEEEC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--------------------EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--------------------~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.---..++|.+....+++++.+..+.-|....- +.+.....-.. |.. ...+..+.++
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~--~l~i~v~~~~ 250 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQ--ALDIQVVRFS 250 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-Cce--eEEEEEEEcC
Confidence 112234778888888999998888888876321 10000000000 100 0123333444
Q ss_pred CCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCcceeeecC
Q 001160 984 NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS----CDGL---LVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 984 pdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s----~dg~---~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.....+++-..+++.+.+.+|. ++.....+. .+.....|. .++. .++.++.++++.||.=.+-.--+.+.
T Consensus 251 ~~~~~IvvLger~Lf~l~~~G~-l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~ 327 (418)
T PF14727_consen 251 SSESDIVVLGERSLFCLKDNGS-LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP 327 (418)
T ss_pred CCCceEEEEecceEEEEcCCCe-EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC
Confidence 4455566666777777777663 332222221 111111121 1222 47888899999999755432222221
Q ss_pred CcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001160 1057 PSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
+..-.+.++..+.-...|++-+.+|.+.+-=+.+.-..+
T Consensus 328 -----------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 328 -----------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred -----------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCccc
Confidence 111223333333334699999999999887776544333
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.36 Score=41.94 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=56.6
Q ss_pred eeEEEEe---cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC
Q 001160 456 VNDIAFA---HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532 (1134)
Q Consensus 456 v~~l~~s---~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 532 (1134)
|+++++. .||.. -|+.|++|..|++|+ ....+.++. ....|.+++-... ..++.+..+|+|-+|+-. .
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG---GRFAYALANGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC---CEEEEEecCCEEEEEeCc--c
Confidence 4555554 45555 799999999999998 446677776 4556777765443 679999999999999652 3
Q ss_pred ceeEecCCCCcEEEEEE
Q 001160 533 SRVDYDAPGNWCTMMAY 549 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~ 549 (1134)
.....+.... +.++.+
T Consensus 73 RlWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 73 RLWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeeccCCC-eEEEEE
Confidence 3444443333 444443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.081 Score=62.98 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=77.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
.+..++.|+..|.+-..|+.+. +.....-..-.++|++++|+.+|. .++.|-.+|.|.+||+..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 5567899999999998888764 111111112457899999999999 899999999999999999999999988888
Q ss_pred CeEEEEeec-cCCccEEEEEecCCeEEEEEc
Q 001160 499 PVYSVCPHH-KESIQFIFSTAIDGKIKAWLY 528 (1134)
Q Consensus 499 ~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~ 528 (1134)
+.+++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 887775543 223346777766665 5644
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.5 Score=45.14 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=109.1
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+-...|+++.|+|+.+.|.+......-.||=...|+.++.. .+.+. ..-..+.+..+|+ +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~-~DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGF-SDPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-ccccc-CChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 344555999999999999999988888888877777777644 44442 3346688888887 7777788888888877
Q ss_pred CCCeeeEE-------ec--CC-CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCC-------CCcE
Q 001160 485 VAGRKQYT-------FE--GH-EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAP-------GNWC 544 (1134)
Q Consensus 485 ~~~~~~~~-------~~--~h-~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~-------~~~v 544 (1134)
..+..+.. +. .+ ......++|.+.. +.|..+-.-+-+.+|.+......... ..+ -..+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 65532221 11 12 5567789998765 67777777777777765532211111 111 1257
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.++.|++....+++-+ ++++.+.-.|.. |.++..
T Consensus 236 Sgl~~~~~~~~LLVLS---~ESr~l~Evd~~-G~~~~~ 269 (316)
T COG3204 236 SGLEFNAITNSLLVLS---DESRRLLEVDLS-GEVIEL 269 (316)
T ss_pred ccceecCCCCcEEEEe---cCCceEEEEecC-CCeeee
Confidence 7888988766666555 245666666654 443433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.024 Score=55.31 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCEEEEEe-CCeEEEEECCCCe-EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc-cceE
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFK-VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRIT 928 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~i~ 928 (1134)
+.-+++|. +|.|.+|+..... ....+..-...|.++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566665 9999999876221 1111222233444444433366789999999999999999998888888887 5666
Q ss_pred EEEEecCCCEEEEE--cCCCcEEEEeCCCc
Q 001160 929 GLAFSPTLNALVSS--GADAQLCMWSIDKW 956 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~--~~D~~i~iWd~~~~ 956 (1134)
.+..+..+++++++ |.|..++.|+++.-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 66666677777777 77888888887753
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.6 Score=43.36 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=113.1
Q ss_pred ccceEEEEEecCCcceEEeeccC--eeEEeecccccCCCCCCcccccCcccccCCCCCccc-cccCCCCCCCCceEEEEe
Q 001160 772 ASKVVRLIYTNSGLSLLALASNA--VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIAL 848 (1134)
Q Consensus 772 ~~~v~~~~~s~~g~~l~~~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~~i~~~~~ 848 (1134)
......+.|..+|..+-+.+.-| .|+.+| +.+|+... ..++. ..--..+++
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~~----~~FgEGit~ 97 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLPP----RYFGEGITI 97 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-TT----T--EEEEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECCc----cccceeEEE
Confidence 44567888888888777777765 455554 45555432 22322 333445666
Q ss_pred ccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc----
Q 001160 849 SKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ---- 924 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~---- 924 (1134)
..|.-+..|--++...+||..+.+.+.++.- .+.=..++. +++.|+.......++++|..+.+....+....
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 6555555555589999999999999988864 345556663 55666666666789999988877766654322
Q ss_pred -cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecC-------CCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 925 -NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP-------AGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 925 -~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..+.-|.|- +|...|=.=....|..-|..+|+.....-+... ........-...+|+.|.+..+.+.+.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 135556664 677777666667788888888875433221111 011111245689999988877766443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.2 Score=43.95 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=79.3
Q ss_pred cCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeeeEEecCCC--------CCeEEEEeeccCCccEEEEEecCCeE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYTFEGHE--------APVYSVCPHHKESIQFIFSTAIDGKI 523 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~~~d~~i 523 (1134)
..+.+.-..+|+|+ +.+ |. .|-. -......|..-.-+.+|+ +--+.++|+.+. -.+.++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~-GtMad~~-~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYG-GTMADFG-DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eee-eeecccc-ccccccccEEEEeccCCCceeeehhccCCccccccccC-cEEEEEccCceEE
Confidence 34556667789998 432 32 1111 122222233222333333 223456776433 2455666778888
Q ss_pred EEEEcc--CCC-----ceeEecC----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceE
Q 001160 524 KAWLYD--YLG-----SRVDYDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLG 592 (1134)
Q Consensus 524 ~~wd~~--~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~ 592 (1134)
.-||.+ ++. .+..+.. .....-.+++..+|++.+++.. .++|...|+.+|+.+.++..... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 888843 221 2222221 1112234556667888777763 67899999999999999988766 899
Q ss_pred EEEEeCC
Q 001160 593 VVQFDTT 599 (1134)
Q Consensus 593 ~~~~~~~ 599 (1134)
|++|...
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9999754
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.039 Score=39.67 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=29.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 381 (1134)
...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8999999999999998 5543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.047 Score=53.38 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=44.6
Q ss_pred cEEEE-EECCeEEEEeCC--CcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 987 THLLV-VHESQISVYDSK--LECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 987 ~~l~~-~~d~~v~vwd~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
..+++ +.++.|.+|..+ +.....+.... ..-...|.-..++.+..+++.||.|+-|++.-++.+.....|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence 34555 578999998883 33333332221 122222333346668899999999999999988888766544
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.048 Score=64.79 Aligned_cols=102 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
-+..++.|+ .|.+-..|+...-. ...=..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+.-|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456778887 57888888765311 111122356899999999 999999999999999999999999999888877766
Q ss_pred EEEE---ecCCCEEEEEcCCCcEEEEeCCC
Q 001160 929 GLAF---SPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 929 ~l~~---s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
++-+ ..++..+.++...|. +|.+.-
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 6554 445667888877775 676643
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.37 E-value=6.2 Score=44.32 Aligned_cols=277 Identities=11% Similarity=0.146 Sum_probs=143.4
Q ss_pred cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc---C--CCCEEEEEeCCC
Q 001160 356 PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG---P--DGLMLGVAFSKH 430 (1134)
Q Consensus 356 pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s---p--dg~~las~~~dg 430 (1134)
++++..+++|+..|.++||+...++......+ +-..-+.+|..++.- + +...||+ =.-.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 44444678899999999999855432211000 011234566666643 2 3335555 4566
Q ss_pred eEEEEEcCCCC-------ccceeeEEecccC--CeeEEEEec----CCCcEEEEEEcCCCcEEEEECCCCeeeEEecC--
Q 001160 431 IVHLYTYNPTG-------ELRQHLEIDAHVG--GVNDIAFAH----PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-- 495 (1134)
Q Consensus 431 ~i~iwd~~~~~-------~~~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-- 495 (1134)
.+.||.+.... ... ...+..|.- ....++.-| .++. +|..=+-||.+.+++-+.-...+.+.+
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred EEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 78888873211 111 112223332 233333333 2233 788889999999999554433344443
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-----------------------eeEecCCCC--cEEEEEEC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-----------------------RVDYDAPGN--WCTMMAYS 550 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 550 (1134)
..++ +++.+.. +.|++++.+..+..|....... .+.+..... .+..+.++
T Consensus 176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 3344 3454555 6889999998998886532100 011111111 23344444
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC----CC---CEEEEEeCCCeEEEEECCCCeeE
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT----TR---NRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
.....+++-+ ...+.+.+. +|......+-.-. +...+.|.. ++ ..++.++.++++.||.=. +++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEE
Confidence 4444444443 455777765 4554433332211 222222222 22 247888899999998533 333
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.........-.+.-..|..-...|++-+.+|.+.+-=+-|.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 33322211111122223333457888888999988766555
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2 Score=51.08 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=126.2
Q ss_pred ccCCCEEEEEe-C------CeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCC-C-----cEEEEEcCCc
Q 001160 849 SKNDSYVMSAS-G------GKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMED-S-----SVQIYNVRVD 914 (1134)
Q Consensus 849 s~dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~d-g-----~i~iwd~~~~ 914 (1134)
+..+.++++|+ . ..+..||..++.-.....- ....-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 44556667776 4 3588899887633222211 22224455555 56888899998 3 5778887765
Q ss_pred e--EEEEecCcccceEEEEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCc
Q 001160 915 E--VKTKLKGHQNRITGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1134)
Q Consensus 915 ~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1134)
+ .+..+........ ++ .-+|.+.|.||.||. +-.||..+.+.......... .-..-+-.-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence 4 2222222222211 22 237888899999864 66777776553211111100 011122234566
Q ss_pred EEEEEE-C------CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCc-----EEEEeCCCcceeeec
Q 001160 988 HLLVVH-E------SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA-----IGVFDAETLRFRCRI 1055 (1134)
Q Consensus 988 ~l~~~~-d------~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~-----I~vwd~~~~~~~~~~ 1055 (1134)
..++|+ + .++..||...+......+-. ......-.-.-++.+.+.|+.|+. |..+|..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 666642 2 45889999444443333221 111111123457888888888873 677888776544321
Q ss_pred CCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-----cEEEEecCCCccccCCCCC
Q 001160 1056 GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1111 (1134)
... .......++.. ++...++|+.|| +|-.||..+.+ |....+
T Consensus 508 ~m~---------~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 PMT---------SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred cCc---------cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 100 01111122221 678999999997 68888776655 655444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.7 Score=42.59 Aligned_cols=210 Identities=13% Similarity=0.086 Sum_probs=129.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccce
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~ 962 (1134)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|...|||...++-+.. -|.-.|-++.+...
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-- 138 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-- 138 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence 345677788 88888888888888888999998766655555566778889999877765544 45556666655322
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIG 1042 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~ 1042 (1134)
...+..+ .........|.++|++-+++..|----.|.....++.+.... ...-..|+..|||..-++.-.+..|.
T Consensus 139 -f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 139 -FPLPLEH--ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred -eeccccc--CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--CCCCcceEECCCCcEEEEeccccceE
Confidence 1111222 125678899999999999864332112222333333333332 45567889999999888877788888
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc-cccCCCC
Q 001160 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE-LKWGGTP 1110 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~ 1110 (1134)
..|-.++.. ..+...... +.. ...+--+| -|+.-+|....+.++-+|.++.. ..|.+|.
T Consensus 214 ridp~~~~a-ev~p~P~~~----~~g---sRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPg 273 (353)
T COG4257 214 RIDPFAGHA-EVVPQPNAL----KAG---SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPG 273 (353)
T ss_pred EcccccCCc-ceecCCCcc----ccc---ccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCC
Confidence 888777622 222211100 111 11222334 56777777777788888776554 4455544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.4 Score=43.30 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=39.1
Q ss_pred EEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 846 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
+++..+|.+.++.- .++|.-.|..+|+.+..+.-....|+|++|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 45566888766665 79999999999999999998899999999953
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.07 Score=38.42 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN 438 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~ 438 (1134)
....|.+++|+|...+||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999984
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.96 E-value=1.8 Score=46.97 Aligned_cols=156 Identities=13% Similarity=0.195 Sum_probs=97.5
Q ss_pred ChhhhhhhcccCCcceeEeeCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccc
Q 001160 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381 (1134)
Q Consensus 302 ~~~~~~~~~~~~~~~~v~~s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~ 381 (1134)
|.+....+.+.+++..+..++-|-...+ -.....+++|.++.||+|.+ ++|+--.+.+|.+.+....+.
T Consensus 32 DaNkqlfavrSggatgvvvkgpndDVpi----------Sfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPNDDVPI----------SFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCCCCCc----------eeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence 4444556666777777766665522211 11112467999999999998 899999999999999854433
Q ss_pred cccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEE
Q 001160 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF 461 (1134)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~ 461 (1134)
...... ..+..+..|....|+.+ .-+|.....| +.+|.+...+ +..+..+.|...|....|
T Consensus 101 ~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~y 161 (657)
T KOG2377|consen 101 QLEYTQ---------------ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMY 161 (657)
T ss_pred hhHHHH---------------HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEE
Confidence 221000 01223445889999877 6677776666 7788776543 222245578889999999
Q ss_pred ecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 462 AHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 462 s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
+++..-.+++|+-..+++.=+-+.++
T Consensus 162 c~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 162 CPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ccccceEeeeccccccccccEEEeec
Confidence 99988534444434444444444443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.8 Score=53.55 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=78.3
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc-----
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY----- 528 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~----- 528 (1134)
...-+.-+.-++ ..+.-+....+.|||...+...+.-. ...+.|.++.|...++|+.+++.+..+.|.++--
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444455555555 34444556689999998887655322 4578999999999999999999999999999843
Q ss_pred cCCCc----ee--EecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 529 DYLGS----RV--DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 529 ~~~~~----~~--~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
.+..+ .. .+.. ..++|.+..|.++|..++.+| +++.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 11111 11 2233 336899999999998888764 35888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.2 Score=53.14 Aligned_cols=151 Identities=7% Similarity=-0.037 Sum_probs=73.1
Q ss_pred ccEEEEEecC-----CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC--CCcEEEEeCCCCeeEEEe
Q 001160 511 IQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG--ESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 511 ~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~ 583 (1134)
+..++.|+.+ ..+..||..+.+-...-..........+..-+++..+.||....+ -..+..||+.+++....-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 3677777765 346778776554332111111111111122355666666632221 246889998876654322
Q ss_pred cCccCcceEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC--
Q 001160 584 SGFRKRSLGVVQFDTTRNRFLAAGDE--------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-- 653 (1134)
Q Consensus 584 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-- 653 (1134)
.......-.++ ...++..++.||.+ ..+.+||..+.+....-...........+. -++++++.|+.+
T Consensus 423 ~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~ 499 (534)
T PHA03098 423 PLPISHYGGCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYE 499 (534)
T ss_pred CCCccccCceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCC
Confidence 11111011122 22345566666632 238889988765443221111111111222 367777777654
Q ss_pred ---CcEEEEECCCc
Q 001160 654 ---NGIKILANSDG 664 (1134)
Q Consensus 654 ---g~i~iw~~~~~ 664 (1134)
+.+.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46788887765
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.66 E-value=9.1 Score=46.52 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=24.8
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECC
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMM 869 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~ 869 (1134)
...|..+.++|+|+++|..+...|.|..+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 567899999999999999987666666664
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.62 E-value=6.7 Score=40.90 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=121.8
Q ss_pred CeeEEEEecCCCcEEEEEEcCCCcEEEEECC------CC-eeeEEecC-----CCCCeEEEEeeccCC----------cc
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV------AG-RKQYTFEG-----HEAPVYSVCPHHKES----------IQ 512 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~----------~~ 512 (1134)
.-+.|+|+|.+. +-++....+...+||.. .. ..+-++.. .....+.+.|+...+ ..
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999887 67777778899999986 12 22334432 234566676654321 13
Q ss_pred EEEEEecCCeEEEEEccCCCc-----eeEecCC-CCc-EEEEEEC--CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE--
Q 001160 513 FIFSTAIDGKIKAWLYDYLGS-----RVDYDAP-GNW-CTMMAYS--ADGTRLFSCGTSKEGESHLVEWNESEGAIKR-- 581 (1134)
Q Consensus 513 ~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~-~~~-v~~~~~s--~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-- 581 (1134)
.++.+++||+|.-|...-... ...+... ... ...+++. ..+.+|+.+-. ..++|.++|-.-.+...
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 478889999999997532222 2223211 233 3345554 34677776643 47789999854322210
Q ss_pred EecCc--cC--cceEE--------EEE---eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc----
Q 001160 582 TYSGF--RK--RSLGV--------VQF---DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---- 642 (1134)
Q Consensus 582 ~~~~~--~~--~~v~~--------~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---- 642 (1134)
.+... .. .+... +.| .+++..=+.|..-|.|-+||+ .++.++.+...+....-+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 00 01110 111 122222223334578999998 477787776555555667787765
Q ss_pred --CCCEEEEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 643 --EGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 643 --d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
.|.+|+---.||+|..||..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667777677999999999888 44444433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.50 E-value=2 Score=41.60 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=64.1
Q ss_pred CCCEEEEEe---CCeEEEEECCCCeEEEEecCCCCceEE--EEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCccc
Q 001160 851 NDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPPAATF--LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1134)
Q Consensus 851 dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 925 (1134)
||.++.+.+ ...|++||+.+++.+....-....+.. +.-. +..+.+-.-.+|....+|.++.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 555666555 356999999999887765433222211 1111 22344445578899999999988888776 334
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcc
Q 001160 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
.-+.++ .|+.-|+.++...+++.-|-++..
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 446665 355556666666677777776644
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=11 Score=41.70 Aligned_cols=157 Identities=11% Similarity=0.042 Sum_probs=89.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEE-EcCCceEEEE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccc
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIY-NVRVDEVKTK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iw-d~~~~~~~~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
...+..+.+.| ++.+++++ ..|.+..- + ..++.-.. -.+-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688999999 77777654 55655532 2 22221111 2233457899999999887665 4567664333444332
Q ss_pred ccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC
Q 001160 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD 1038 (1134)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d 1038 (1134)
=. ....+.... ...+..++|.|++..++++.+|.+..=.-.++..........-......+.|..+++.+++ +..
T Consensus 248 W~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~ 322 (334)
T PRK13684 248 WS--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR 322 (334)
T ss_pred cc--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence 11 111110100 1346788999999988888887665422233433332211112346788888877776665 468
Q ss_pred CcEEEEeC
Q 001160 1039 GAIGVFDA 1046 (1134)
Q Consensus 1039 g~I~vwd~ 1046 (1134)
|.|--|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 88877763
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.9 Score=51.63 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=90.9
Q ss_pred CCCCEEEEEeCCC------eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001160 418 PDGLMLGVAFSKH------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1134)
Q Consensus 418 pdg~~las~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~ 486 (1134)
.++..++.||.++ .+..||..+.+... ...+.........+ .-+++ +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3566667776532 57788877654321 11111111111222 22455 56667655 3577888877
Q ss_pred CeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 487 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 487 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
++.... +...... .+++. . ++.+.+.|+.+ +.+..||..+.+-...-..........+..-+++..+.
T Consensus 368 ~~W~~~~~lp~~r~~-~~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYN-PCVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCcc-ceEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 654321 1111111 11121 1 23666666632 45788888765433221111111111122235555566
Q ss_pred EeeCCCC----CCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001160 559 CGTSKEG----ESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 559 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
||.+... -..+.+||..+++....-..... .....+.+ ++..++.||.+ ..+.+||..+.+-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6542211 12488999887765432211111 01112222 56666667643 4678888876654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.4 Score=51.59 Aligned_cols=123 Identities=12% Similarity=0.186 Sum_probs=77.1
Q ss_pred EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-CcccceEEEEEe--cCCCEEEEEcCCCcEEEEe
Q 001160 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQNRITGLAFS--PTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 876 ~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~~~i~~l~~s--~d~~~l~s~~~D~~i~iWd 952 (1134)
++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|.++.|. ||++.+++.|-.+.|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3433344555555555 45555555555689999999886433321 356789999984 6899999999999999985
Q ss_pred CCCc----ccccceeeecC--CCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC
Q 001160 953 IDKW----EKLKSRFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002 (1134)
Q Consensus 953 ~~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~ 1002 (1134)
-... .......+... ..+. ..+|.+..|.+||.+++ +.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 4211 11111111111 1222 14688999999997655 45678888876
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.93 E-value=9.3 Score=39.88 Aligned_cols=210 Identities=15% Similarity=0.153 Sum_probs=123.9
Q ss_pred CceEEEEeccCCCEEEEEe-CCeEEEEECC-------CCeEEEEecC-----CCCceEEEEEcCCCCcE-----------
Q 001160 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMM-------TFKVMTMFMS-----PPPAATFLAFHPQDNNI----------- 896 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~~~~~----------- 896 (1134)
..-+.++++|.+.+-++.. .+...+||.. ...++.++.. .....+.+.|.. ...+
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccce
Confidence 3457899999988777665 6889999986 2233444442 123567777774 2222
Q ss_pred -EEEEeCCCcEEEEEcCCceE-----EEEec-Ccccc-eEEEEEecC--CCEEEE-EcCCCcEEEEeCCCcccccc-eee
Q 001160 897 -IAIGMEDSSVQIYNVRVDEV-----KTKLK-GHQNR-ITGLAFSPT--LNALVS-SGADAQLCMWSIDKWEKLKS-RFI 964 (1134)
Q Consensus 897 -lasg~~dg~i~iwd~~~~~~-----~~~l~-~h~~~-i~~l~~s~d--~~~l~s-~~~D~~i~iWd~~~~~~~~~-~~~ 964 (1134)
++.+++||+|.=|.-.-+.. ...+. +-.+. -..+++... +.+|.. --..++|.++|-.-.+.... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 45678999999998432211 12222 11233 345666543 445544 44678899998654321100 000
Q ss_pred e--cCCCCCCCCcCceEEEECCCCcEEEE-E-------------ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEcc-
Q 001160 965 Q--APAGRQSPLVGETKVQFHNDQTHLLV-V-------------HESQISVYDSKLECSRSWSPKDALPAPISSAIYSC- 1027 (1134)
Q Consensus 965 ~--~~~~~~~~~~~v~~~~fspdg~~l~~-~-------------~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~- 1027 (1134)
. .+.+.. ...+.- -.++++++ + .-|-|-+||..+..++++... +.-..-+.|+..|
T Consensus 182 DP~iPagyA-----PFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNaPWG~a~APa 254 (336)
T TIGR03118 182 DPALPAGYA-----PFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNAPWGLAIAPE 254 (336)
T ss_pred CCCCCCCCC-----CcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccCCceeeeChh
Confidence 0 011111 111111 12333333 2 125699999999998877543 3355667788755
Q ss_pred -----CCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1028 -----DGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1028 -----dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.|.+|+----||+|..||..+|+.+..+...
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 5677777777999999999999999888743
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.78 E-value=22 Score=43.56 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=63.7
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCCeEEEEec--CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC--CceEEEEec
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKLK 921 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~--~~~~~~~l~ 921 (1134)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+.+ .+..+++|...-.|..+..+ ..+. ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 466677778888778999999998877665543 23556888887 45677888766666554443 3343 3332
Q ss_pred C--cccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 922 G--HQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 922 ~--h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
. -...|+++.+- |...+|.+..=|.+.+-.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 2 22336666664 4455666666565544443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.9 Score=47.68 Aligned_cols=182 Identities=10% Similarity=0.077 Sum_probs=98.8
Q ss_pred eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe----cCcccceEEEEEecCCC
Q 001160 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL----KGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l----~~h~~~i~~l~~s~d~~ 937 (1134)
.|+||++. |..+..+.-..+.+..+.|+. +. -|++...||++++|++.. +.+... ......|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 48888885 566555544444888999997 54 455678999999999853 322221 22333466666666665
Q ss_pred EEEEEcCCCcEE-EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE--EECCeE--EEEeCCCc--ceecc
Q 001160 938 ALVSSGADAQLC-MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV--VHESQI--SVYDSKLE--CSRSW 1010 (1134)
Q Consensus 938 ~l~s~~~D~~i~-iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~--~~d~~v--~vwd~~~~--~~~~~ 1010 (1134)
.+.+.+ |.+. +-+.+... ........+.. ..-.+...-++++.... .-+-.| .++..+.. ....+
T Consensus 141 avlt~~--g~v~~i~~~~~~~---~~~~~diP~~~---~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTVS--GQVILINGVEEPK---LRKMPDIPYNE---LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEecC--CcEEEEcCCCcch---hhhCCCCCCcc---CCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 555543 3333 33333211 11111111111 11122222222221111 111110 11111111 11111
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
... .+.+..+..||+.++|+.=..+|.|.+-+++..+.++++...
T Consensus 213 ~~~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 213 SWP---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred CCC---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence 111 367889999999999999999999999999999998888743
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.1 Score=48.05 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCcEEEEEe-----------CCC-cEEEEEcCC--ceE--EEEecCcccceEEEEEecCCCEEEEEcCC
Q 001160 882 PAATFLAFHPQDNNIIAIGM-----------EDS-SVQIYNVRV--DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~-----------~dg-~i~iwd~~~--~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1134)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+. ...+.........|++.+++ ++++ ...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence 3567889998 788776542 223 677776432 322 23343333456889999998 5554 444
Q ss_pred CcEEEEeCCCccc---ccceeeecCCCC-CCCCcCceEEEECCCCcEEEE-EEC-------------------CeEEEEe
Q 001160 946 AQLCMWSIDKWEK---LKSRFIQAPAGR-QSPLVGETKVQFHNDQTHLLV-VHE-------------------SQISVYD 1001 (1134)
Q Consensus 946 ~~i~iWd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~fspdg~~l~~-~~d-------------------~~v~vwd 1001 (1134)
...++.|...... ....++...... .........++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333445433211 111222222221 001134678999999988776 421 3355555
Q ss_pred CCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 1002 SKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 1002 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
..+.....+... ......++|+++|+++++-.
T Consensus 171 pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEEEEecC---cCCCccceECCCCCEEEEcc
Confidence 555444444322 34456899999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.8 Score=47.91 Aligned_cols=183 Identities=12% Similarity=-0.001 Sum_probs=89.8
Q ss_pred cCCCEEEEEe-C-----CeEEEEECCCCeEEEE--ecCCCCceEEEEEcCCCCcEEEEEeCC--CcEEEEEcCCce--EE
Q 001160 850 KNDSYVMSAS-G-----GKVSLFNMMTFKVMTM--FMSPPPAATFLAFHPQDNNIIAIGMED--SSVQIYNVRVDE--VK 917 (1134)
Q Consensus 850 ~dg~~la~~s-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~lasg~~d--g~i~iwd~~~~~--~~ 917 (1134)
.++..+++|+ + ..+..||..+++-... +.........+. - ++.+.++|+.+ ..+..||..+++ .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455666665 3 2477788876543222 221111122222 3 67888888864 357888876543 22
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCC---cEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADA---QLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
..+....... + +..-+|++.+.||.++ .+..||..+.+-.....+..+. . ...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~-~-~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r------~--~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNP-A-VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH------Y--KSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCccc-E-EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc------c--cceEEEECCEEEEEC--
Confidence 2332111111 1 2234788888888653 4677888765532211111111 1 112223456655555
Q ss_pred CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCc
Q 001160 995 SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETL 1049 (1134)
Q Consensus 995 ~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-----g~I~vwd~~~~ 1049 (1134)
|.+.+||.+.+............... ++ ..-+|+..+.|+.+ ..|.+||..++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~-~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-EL-IIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EE-EEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 45788998555444333221101112 22 23467777777754 23555555543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.64 E-value=3.1 Score=46.68 Aligned_cols=147 Identities=11% Similarity=0.072 Sum_probs=78.4
Q ss_pred ceEEEEEecCCCEEEEEc-----------CCC-cEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 926 RITGLAFSPTLNALVSSG-----------ADA-QLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~-----------~D~-~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
...+|+|.++|+++++-. ..+ .|.+++-..+ +..+..... .+. .....+++.++| .+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCC----CCccceeEecCC-EEEe
Confidence 456889999998877653 122 5766665432 211111111 111 235789999999 4444
Q ss_pred EECCeEEEE-eCCCc-----ceec----cCCC-CCCCCCeEEEEEccCCCEEEEEecC-------------------CcE
Q 001160 992 VHESQISVY-DSKLE-----CSRS----WSPK-DALPAPISSAIYSCDGLLVYAGFCD-------------------GAI 1041 (1134)
Q Consensus 992 ~~d~~v~vw-d~~~~-----~~~~----~~~~-~~h~~~v~~v~~s~dg~~l~~~~~d-------------------g~I 1041 (1134)
....|..| |.++. .... +... ..+......++|.|||.+.++-+.. |.|
T Consensus 88 -~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 -TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred -CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 34445544 55321 1111 1111 0023447789999999876654421 334
Q ss_pred EEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC
Q 001160 1042 GVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG 1092 (1134)
Q Consensus 1042 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg 1092 (1134)
.-++..+++.- .+. ..-..+..++|+| +|+++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 44555443321 111 1225567899999 788887755444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=21 Score=40.09 Aligned_cols=152 Identities=13% Similarity=0.090 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEE-EEEcCCceE--EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQ-IYNVRVDEV--KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~-iwd~~~~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
...+..++ ++.+++++. .|.+. -||- |+. ...-..-...++++.|.+++.+++.+ .+|.+ +|....++.-.
T Consensus 241 f~~v~~~~-dG~~~~vg~-~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSS-RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcC-CCCEEEEEC-CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 34456667 777777654 44433 3442 221 11112234568999999999877655 55654 45444443110
Q ss_pred c-eeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001160 961 S-RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 961 ~-~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
. .+...... .....+..+.|.+++..++++..|.+....-.++..........-......+.|.++++-+++| .+|
T Consensus 315 ~~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 315 DFDFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred ccceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 0 01111111 0113478899999999999998888777665555433332222225678899998887766665 677
Q ss_pred cEEEE
Q 001160 1040 AIGVF 1044 (1134)
Q Consensus 1040 ~I~vw 1044 (1134)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 76554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=53.99 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=93.0
Q ss_pred CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-----EEecC------CCCCeEEEEeeccCCccEEEEEecCCe
Q 001160 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-----YTFEG------HEAPVYSVCPHHKESIQFIFSTAIDGK 522 (1134)
Q Consensus 454 ~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-----~~~~~------h~~~v~~i~~~~~~~~~~l~s~~~d~~ 522 (1134)
-+|..+...+|+....++..+.+-.|..+|+++-..- .-|.. ......++.|+|.-. ...+.+..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccc
Confidence 3567777778877545556666668999998753211 11111 223455667777654 45667788899
Q ss_pred EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc---cCcceEEEEEeCC
Q 001160 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF---RKRSLGVVQFDTT 599 (1134)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~ 599 (1134)
|++..+........--.-....++++|+|.|+.++.+- +.|++.-|... ++....+.+. ....|.+++|-..
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~----nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR----NNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec----CCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 88886654333332223445789999999999999985 47778777643 3433333332 2336889999877
Q ss_pred CCEEEE
Q 001160 600 RNRFLA 605 (1134)
Q Consensus 600 ~~~l~~ 605 (1134)
..++++
T Consensus 255 ~eflvv 260 (1405)
T KOG3630|consen 255 QEFLVV 260 (1405)
T ss_pred eeEEEE
Confidence 777665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.041 Score=63.77 Aligned_cols=228 Identities=10% Similarity=0.061 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC--CceEEEE-----ecCcccceEEEE
Q 001160 860 GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTK-----LKGHQNRITGLA 931 (1134)
Q Consensus 860 dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~--~~~~~~~-----l~~h~~~i~~l~ 931 (1134)
.+.+++-+..+.-. -..+++..+.+-.++|...+...++ ..-|.+.||+++ .|+.... .......+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677766654221 1224556677888888653333332 344789999976 3443322 233333444455
Q ss_pred Eec---CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC--------cCceEEEECCCCcEEEE-EECCeEEE
Q 001160 932 FSP---TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL--------VGETKVQFHNDQTHLLV-VHESQISV 999 (1134)
Q Consensus 932 ~s~---d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~fspdg~~l~~-~~d~~v~v 999 (1134)
|.| +..++..+-.++++++....+... ....+|.... +-+.--..||||+.+++ ++||.++.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 544 556677777888888877765432 1111222110 11112237999999999 78999988
Q ss_pred EeC------CCcceeccCCCCCCCCCeEEEEEccC-------CC--EEEEEe-cCCcEEEEeCCCcceeeecCCcccccc
Q 001160 1000 YDS------KLECSRSWSPKDALPAPISSAIYSCD-------GL--LVYAGF-CDGAIGVFDAETLRFRCRIGPSAYIPT 1063 (1134)
Q Consensus 1000 wd~------~~~~~~~~~~~~~h~~~v~~v~~s~d-------g~--~l~~~~-~dg~I~vwd~~~~~~~~~~~~~~~~~~ 1063 (1134)
|.+ ...|+..|.++++|....+- |... +. ++++++ .+..+++|.-..-+++-..........
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~l--c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV 339 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWL--CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIV 339 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeee--eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEee
Confidence 887 44566677777655433222 3321 12 344444 345699998877666522221111111
Q ss_pred cccCCCCccEE-EeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1064 YAVSNTAHPLV-IAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1064 ~~~~~~~~~~~-~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+.+...+..+. +.|.. ..+++-+.||.|.+|.-.
T Consensus 340 ~p~~~~v~~~~~~~~~~---~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 340 GPHDGEVTDLSMCQWMT---TRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cCCCccccchhhhHHHH---HHHHHhhhHHHHHHhhcc
Confidence 11222222211 11111 245567778888888643
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.029 Score=60.65 Aligned_cols=242 Identities=15% Similarity=0.193 Sum_probs=136.3
Q ss_pred EEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001160 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
....+-+.+..++.++.+..+..||-. |+.+.. .. . .+....++|..+|..+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le-~n---~-tg~aldm~wDkegdvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE-LN---P-TGKALDMAWDKEGDVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc-cC---C-chhHhhhhhccccchh
Confidence 345667777778888888777777632 111110 11 1 4556678888888877
Q ss_pred EEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEe
Q 001160 856 MSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS 933 (1134)
Q Consensus 856 a~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s 933 (1134)
++.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.
T Consensus 90 avlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 7665 68999999986443222122222223378999 89999999999999999987776655555599999999999
Q ss_pred cCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC--cCceEEEECCCCcEEEEEECCeEEEE--eC---CCcc
Q 001160 934 PTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL--VGETKVQFHNDQTHLLVVHESQISVY--DS---KLEC 1006 (1134)
Q Consensus 934 ~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~fspdg~~l~~~~d~~v~vw--d~---~~~~ 1006 (1134)
+.+. .+.++.|..+.+-...+... .+....+..... .-..-=.|..-|..+.....+.+.+. .+ +...
T Consensus 169 lEd~-vil~dcd~~L~v~~qegeta----~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv 243 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTLSVTTQEGETA----SLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV 243 (615)
T ss_pred ccce-eeecCcHHHHHHhhhcccee----eeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCcc
Confidence 8764 55566665554433322111 000011110000 00001122333333433222221111 11 1111
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~ 1055 (1134)
-..+... .+.+.++.|--||..+ -+..-|.|..-.+.++++..++
T Consensus 244 al~fq~~---~gni~cyrwylDg~i~-igf~ag~iV~iS~h~aeLgaef 288 (615)
T KOG2247|consen 244 ALQFQEK---YGNIHCYRWYLDGYIL-IGFDAGYIVSISAHNAELGAEF 288 (615)
T ss_pred ceEeeec---CCceeEEEEecccccc-ccccceeEEEEeccchHHHHHH
Confidence 1122222 5678888888888644 4556677777778877766544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.1 Score=46.85 Aligned_cols=184 Identities=7% Similarity=-0.115 Sum_probs=83.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeE
Q 001160 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQY 491 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~ 491 (1134)
++..+++||.+ ..+..||..++.... ...+....... +++ .-++. +.+.||.+ .++..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 34556666643 256778877653221 11111111111 122 23555 55666643 468889877665432
Q ss_pred --EecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 492 --TFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 492 --~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
.+.........+.. +|...+.|+.++ .+..||..+.+-...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 12111111111211 336677777553 467788765443321111111111112223455555543
Q ss_pred CcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNM 620 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 620 (1134)
.+.+||..+++....-..... .... ++ .-+++..+.||.+ ..+..||..+.
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 267788887665432221111 0122 22 2356666667643 24555665544
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.83 E-value=18 Score=38.73 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=102.6
Q ss_pred eEEEEeccCCCEEEE--Ee-C----------CeEEEEECCCCeEEEEecC------CCCceEEEEEcCCCC----cEEEE
Q 001160 843 AACIALSKNDSYVMS--AS-G----------GKVSLFNMMTFKVMTMFMS------PPPAATFLAFHPQDN----NIIAI 899 (1134)
Q Consensus 843 i~~~~~s~dg~~la~--~s-d----------g~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~----~~las 899 (1134)
|..+...+++++-+. |. + -+|.+||+.+++.++++.- ..+....+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 2689999999998887642 234577787765222 23333
Q ss_pred Ee-CCCcEEEEEcCCceEEEEecCcc-------------------cceEEEEEec---CCCEEEEEcCCCcEEEEeCCCc
Q 001160 900 GM-EDSSVQIYNVRVDEVKTKLKGHQ-------------------NRITGLAFSP---TLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 900 g~-~dg~i~iwd~~~~~~~~~l~~h~-------------------~~i~~l~~s~---d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
+. ..+-|.|+|+.+++.-+.+..+. +.+.+++.+| |+++|.-....+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 33589999999987655543221 2366667655 666666555433 245554432
Q ss_pred ccccceeeecC--------CCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCC----cceeccCCCCCCCCCeEEE
Q 001160 957 EKLKSRFIQAP--------AGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL----ECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 957 ~~~~~~~~~~~--------~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~----~~~~~~~~~~~h~~~v~~v 1023 (1134)
-.......... -|... .....++++++|..+++ ...+.|..|+..+ +....+......-..+.++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~ 239 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGL 239 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEE
T ss_pred HhhCccccccccccccceeccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeecccee
Confidence 11110000000 01100 13467888999998888 5788999999954 2222222221114567888
Q ss_pred EEcc--CCCEEEEE
Q 001160 1024 IYSC--DGLLVYAG 1035 (1134)
Q Consensus 1024 ~~s~--dg~~l~~~ 1035 (1134)
++.+ +|.+.+..
T Consensus 240 ~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 240 KIDPEGDGYLWVLS 253 (287)
T ss_dssp EE-T--TS-EEEEE
T ss_pred eeccccCceEEEEE
Confidence 8888 77765554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.9 Score=52.41 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=95.6
Q ss_pred CCceEEEEeccCCCEEEEEe--C-CeEEEEECCCCeEEE-----EecC------CCCceEEEEEcCCCCcEEEEEeCCCc
Q 001160 840 EESAACIALSKNDSYVMSAS--G-GKVSLFNMMTFKVMT-----MFMS------PPPAATFLAFHPQDNNIIAIGMEDSS 905 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~lasg~~dg~ 905 (1134)
...+..+...+|+...++.. + ..|.+||+.+...-. -|.. ......++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 55677788888988776654 3 369999997643221 1111 12345678888743344566778999
Q ss_pred EEEEEcCCce-EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC
Q 001160 906 VQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 906 i~iwd~~~~~-~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
|++..+.-.. ....+. .....++++|+|.|+.++.|-..|++.-|...-.... .+..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence 9988765332 222222 4566899999999999999999999988876543211 111221111 26789999998
Q ss_pred CCcEEEE
Q 001160 985 DQTHLLV 991 (1134)
Q Consensus 985 dg~~l~~ 991 (1134)
...++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.56 Score=32.67 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCeeEEEEecCCC--eEEEEEeCCCcEEEEEccCc
Q 001160 347 SNVMSMDFHPQQQ--TILLVGTNVGDISLWEVGSR 379 (1134)
Q Consensus 347 ~~V~~v~~spdg~--~llasg~~dg~i~iwd~~~~ 379 (1134)
+.|.+++|||... -||+..-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4789999997543 48888888899999999863
|
It contains a characteristic DLL sequence motif. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.13 Score=59.96 Aligned_cols=197 Identities=11% Similarity=0.148 Sum_probs=108.3
Q ss_pred CCceEEEEecc-CCCEEEEEe-CCeEEEEECCC--CeEEEEe-----cCCCC---ceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 840 EESAACIALSK-NDSYVMSAS-GGKVSLFNMMT--FKVMTMF-----MSPPP---AATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 840 ~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~--~~~~~~~-----~~~~~---~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
.+.+..+.|.. +-..++ . -|.+.|||++- |+....+ ..... .|..+-|-+ ..-++..+..+++|+
T Consensus 132 ~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 132 PGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCcee
Confidence 44555566543 111121 2 37788888763 3332222 11122 344444555 567888888999999
Q ss_pred EEEcCCceEEEEecCcccceEEEE-----------EecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcC
Q 001160 908 IYNVRVDEVKTKLKGHQNRITGLA-----------FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 908 iwd~~~~~~~~~l~~h~~~i~~l~-----------~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
+..+.+... ..+++|+..++.++ .||||+.+|+++.||.+++|.+.-......+++..-..|.. ..
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p 285 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HP 285 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CC
Confidence 987765432 45667877766554 48999999999999999999875433333333333333331 11
Q ss_pred ceEEEECCC-------C--cEEEEEE--CCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCC------------EE
Q 001160 977 ETKVQFHND-------Q--THLLVVH--ESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGL------------LV 1032 (1134)
Q Consensus 977 v~~~~fspd-------g--~~l~~~~--d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~------------~l 1032 (1134)
-.|..|... + .+++++. ++.+++|.- -.+|+..+. ...|..|. -+||+ .+
T Consensus 286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHH
Confidence 122223322 1 2344443 467889987 556653222 23344444 33333 23
Q ss_pred EEEecCCcEEEEeCCC
Q 001160 1033 YAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~ 1048 (1134)
+.-+-|+.|.+|-=..
T Consensus 360 v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHhhhHHHHHHhhcch
Confidence 4455678888886443
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.15 E-value=12 Score=37.27 Aligned_cols=149 Identities=10% Similarity=0.044 Sum_probs=83.2
Q ss_pred cEEEEEeCCCcEEEEEcC--CceEEEEecCcccceEEEEEecCCCEEEEEcCC------CcEEEE---eCC--Ccccccc
Q 001160 895 NIIAIGMEDSSVQIYNVR--VDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMW---SID--KWEKLKS 961 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~--~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iW---d~~--~~~~~~~ 961 (1134)
..|..+.....|.+|++. ..+.+.+|..- +.|..+.++..|++|+|--.+ ..+|+| ... ..+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455445667789999998 33556667644 889999999999999986432 245654 322 1111111
Q ss_pred eeeecCCCC--------------CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcce--e---ccCCC---CCC--C
Q 001160 962 RFIQAPAGR--------------QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS--R---SWSPK---DAL--P 1017 (1134)
Q Consensus 962 ~~~~~~~~~--------------~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~--~---~~~~~---~~h--~ 1017 (1134)
+........ .+....+.+++--|-..-|+++.++.+.+|.+..... . .+... --| +
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 111100000 0011356777777777778888889999998832222 1 11100 001 2
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
-....++|. +.|+|..+ +-.++++.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 224445553 45777664 5567777653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.72 Score=32.13 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCC--cEEEEEeCCCcEEEEEcCC
Q 001160 882 PAATFLAFHPQDN--NIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 882 ~~i~~l~~s~~~~--~~lasg~~dg~i~iwd~~~ 913 (1134)
++|.++.|||..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6999998899999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.95 E-value=25 Score=41.48 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=80.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcccee-eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE-EECCCC
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV-WDVVAG 487 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i-wd~~~~ 487 (1134)
.+..+.||.+..+| +...+|++++|++.... +... ..+......|..+.|..+|- .+.+. +|.+.+ -+....
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence 78899999877655 45699999999987532 2110 11122334566666766663 33333 344433 332221
Q ss_pred eeeEEecC---CCCCeEEEEee-ccCCccEEEEEecCCeEEEEEccCCC-ceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 488 RKQYTFEG---HEAPVYSVCPH-HKESIQFIFSTAIDGKIKAWLYDYLG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 488 ~~~~~~~~---h~~~v~~i~~~-~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+++++. ..-+-.|-... +......++-....--..++-.+... ....+......+..++.||+.++|+.-..
T Consensus 159 -~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 -KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred -hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 2222221 11111111111 11100111111100000111111111 11222233457888999999999987653
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
.|.|.+-+....+....+...
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~ 257 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCT 257 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCC
Confidence 677888887777766666543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.82 E-value=13 Score=45.12 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=54.3
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeC--CCc---------c-e--eccCC-----CCCCCCCeEEEEEccC---CCEE
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDS--KLE---------C-S--RSWSP-----KDALPAPISSAIYSCD---GLLV 1032 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~--~~~---------~-~--~~~~~-----~~~h~~~v~~v~~s~d---g~~l 1032 (1134)
..|..+.++|+|++||..+...|.|..+ ... . + +.+.. ...+...|..+.|.|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4689999999999999977777777665 110 0 0 11110 1123568999999986 5788
Q ss_pred EEEecCCcEEEEeCCCcc
Q 001160 1033 YAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~~~ 1050 (1134)
++-+.|+++++||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 888899999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.5 Score=42.87 Aligned_cols=143 Identities=9% Similarity=0.082 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccc
Q 001160 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLK 960 (1134)
Q Consensus 884 i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~ 960 (1134)
-+.+-|.. .++.| .+...|.+.=|.+... ...-.+ ....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555654 33333 3445566666665432 112222 2345689999999999999999999999999985544321
Q ss_pred ceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe
Q 001160 961 SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 961 ~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
.. ...+......+...+|+.. .-+|...+..+.+|.. ..+.++.. ..|...|.-..|+++-+.++.++
T Consensus 103 ~~----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV---ks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EY----TQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV---KSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HH----HHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh---hhcccCccEEEEccccceEeeec
Confidence 11 1112222245888999877 6677777778888877 33444333 34577888888999887644433
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.56 E-value=12 Score=41.23 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCc------EEEEEcCC--c-----eEE--EEecCccc--------ceEEEEEecCCC
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSS------VQIYNVRV--D-----EVK--TKLKGHQN--------RITGLAFSPTLN 937 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~------i~iwd~~~--~-----~~~--~~l~~h~~--------~i~~l~~s~d~~ 937 (1134)
-+.+..+.+.++++. +++.+++|. ++.+++.. + +.. ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999873454 445667777 66665543 1 111 11221111 234788888999
Q ss_pred EEEEEcCC------CcEEEEeCCCcccccceeeecCC-------CCCCCCcCceEEEECCCCcEEEEE------ECC--e
Q 001160 938 ALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLVV------HES--Q 996 (1134)
Q Consensus 938 ~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~~------~d~--~ 996 (1134)
++++.-.+ ..|+-++.. |+......+.... .......+.-.++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 5543322121111 112233677899999999955542 122 1
Q ss_pred -------EEEE--eCC--CcceeccCCCCC------CCCCeEEEEEccCCCEEEE
Q 001160 997 -------ISVY--DSK--LECSRSWSPKDA------LPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 997 -------v~vw--d~~--~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~~ 1034 (1134)
++++ |.. +.....+..... ....|+.+.+-+|+++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 442 222333221111 3568899999999997765
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.46 E-value=9 Score=42.45 Aligned_cols=150 Identities=9% Similarity=0.074 Sum_probs=92.4
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC------CccEEEEEecCCeEEEEEccCCC
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE------SIQFIFSTAIDGKIKAWLYDYLG 532 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 532 (1134)
+-...+...+++..|+....++-.|++.|+.+-.+.-|..- -+.+.|.. +.+.|+ |-.+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 33444444446667888888999999999999998877765 34555532 113444 4455556556666544
Q ss_pred ceeEecCCCC-----cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 533 SRVDYDAPGN-----WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 533 ~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
.......... ...+..-. ..-++++++. .|-|++||.-.-.....+++..+ .|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhccccccccccccc-cCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 3222221111 22233222 3457888775 55599999665555555666555 788899999999988876
Q ss_pred CCCeEEEEECC
Q 001160 608 DEFQIKFWDMD 618 (1134)
Q Consensus 608 ~dg~i~iwd~~ 618 (1134)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 4 356666653
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=90.25 E-value=30 Score=37.44 Aligned_cols=208 Identities=10% Similarity=-0.036 Sum_probs=103.0
Q ss_pred CCceEEEEeccCCCEEEEEeCCe--EEEEECCCCeE---------------EEEecCCCCceEEEEEcCCCCcEEEEEeC
Q 001160 840 EESAACIALSKNDSYVMSASGGK--VSLFNMMTFKV---------------MTMFMSPPPAATFLAFHPQDNNIIAIGME 902 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~--i~vwd~~~~~~---------------~~~~~~~~~~i~~l~~s~~~~~~lasg~~ 902 (1134)
...|+++.+.+..+.|++-+|.. ++++++..... ....-++......++.........+.+..
T Consensus 42 ~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~ 121 (302)
T smart00036 42 RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVAL 121 (302)
T ss_pred cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEc
Confidence 67899999999999888888665 99999854321 01122344434444444311223334445
Q ss_pred CCcEEEEEcCCc----eEEEEe---c-CcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCC--cccccceeeecCCCC
Q 001160 903 DSSVQIYNVRVD----EVKTKL---K-GHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDK--WEKLKSRFIQAPAGR 970 (1134)
Q Consensus 903 dg~i~iwd~~~~----~~~~~l---~-~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~~~~ 970 (1134)
..+|.++..... ...+.+ . .-..++..+..+++ ...+..|+..+...++++.. ...... .+......
T Consensus 122 ~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~~ 200 (302)
T smart00036 122 QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSEE 200 (302)
T ss_pred CCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-cccccccc
Confidence 567777654321 111110 0 01123334433433 34555565432344555533 110000 00000000
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
. ...+.++..-+++ .++.+.+....+-|..| ...+..... -.....++++.. .+|+.-+ +..|.|+++.++
T Consensus 201 ~--~~~p~~i~~l~~~-e~Llc~~~~~v~Vn~~G~~~~r~~~l~--w~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 201 T--SLKPISVVQVPRD-EFLLCYDEFGVFVNLYGKRRSRNPILH--WEFMPESFAYHS--PYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred c--ccCceEEEEECCC-eEEEEECcEEEEEeCCCCccccceEEE--cCCcccEEEEEC--CEEEEEc-CCcEEEEECCCC
Confidence 0 0023344444444 44555566666667766 332211110 034556777663 4565554 566999999999
Q ss_pred ceeeecC
Q 001160 1050 RFRCRIG 1056 (1134)
Q Consensus 1050 ~~~~~~~ 1056 (1134)
+.+.++.
T Consensus 273 ~l~q~i~ 279 (302)
T smart00036 273 ELLQELA 279 (302)
T ss_pred ceEEEEe
Confidence 9888775
|
Unpublished observations. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=33 Score=38.69 Aligned_cols=40 Identities=8% Similarity=0.053 Sum_probs=19.5
Q ss_pred EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 612 IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.+||.++.+....-..+.. .-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877553322111111 11223344457777777753
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.99 E-value=18 Score=43.24 Aligned_cols=116 Identities=11% Similarity=0.091 Sum_probs=76.8
Q ss_pred CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC-------C----------CccceeeEEecccCCeeEEEEe--cCCCcE
Q 001160 410 SVNRCVWGP--DGLMLGVAFSKHIVHLYTYNP-------T----------GELRQHLEIDAHVGGVNDIAFA--HPNKQL 468 (1134)
Q Consensus 410 ~V~~i~~sp--dg~~las~~~dg~i~iwd~~~-------~----------~~~~~~~~~~~h~~~v~~l~~s--~d~~~~ 468 (1134)
.|+.|.... +...|+.|..||.|.+|.+++ . ..+.+...+. -...++.+++. ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r-- 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR-- 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence 466665544 566899999999999997631 0 0111222232 34478999998 5555
Q ss_pred EEEEEcCCCcEEEEECCCC--eeeE-EecCCCCCeEEEEeeccCC---cc-EEEEEecCCeEEEEEc
Q 001160 469 CIVTCGDDKMIKVWDVVAG--RKQY-TFEGHEAPVYSVCPHHKES---IQ-FIFSTAIDGKIKAWLY 528 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~i~~~~~~~---~~-~l~s~~~d~~i~~wd~ 528 (1134)
+||.++....|.||-.... +... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888888765432 1111 1112667899999987652 22 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.2 Score=47.99 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=96.3
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEE-ec-CCCC----ceE-EEEEcCCCCcEEEEEeCCCcEEEE-Ec
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTM-FM-SPPP----AAT-FLAFHPQDNNIIAIGMEDSSVQIY-NV 911 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~-~~-~~~~----~i~-~l~~s~~~~~~lasg~~dg~i~iw-d~ 911 (1134)
...+..+-+.|||+.+.+-+..++.|+++.+...... +- ...+ .|+ ++..-. ++.-|.+++.||-|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 5678889999999999988888999999876543221 11 1111 233 233334 67777889999999888 44
Q ss_pred CCc-e----EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 912 RVD-E----VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 912 ~~~-~----~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
..+ + .++.++-...++..+.--.+.+-+++-+..|++.++.....+.+- ..... ..+..+++||.+
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~~ 369 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPNQ 369 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCccc
Confidence 332 1 122222222334444333334567777888888877655433211 11111 245789999999
Q ss_pred cEEEEEECCeEEEEeC
Q 001160 987 THLLVVHESQISVYDS 1002 (1134)
Q Consensus 987 ~~l~~~~d~~v~vwd~ 1002 (1134)
.+|++-..+.++++.+
T Consensus 370 ~~Ll~e~~gki~~~~l 385 (733)
T COG4590 370 AYLLSEDQGKIRLAQL 385 (733)
T ss_pred chheeecCCceEEEEe
Confidence 9999988899999987
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.3 Score=30.45 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCC--CcEEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNV--GDISLW 374 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~d--g~i~iw 374 (1134)
....-.+.+|||||++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 456788999999999888888877 777766
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=89.77 E-value=41 Score=43.78 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=87.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|-..++.|.-+|+|+++= =.|+.++.||..... |... -......++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lR---lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLR---LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEE---eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 445566777777877432 247788888877553 3210 012334566666666777666
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC------ee--eEEecCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG------RK--QYTFEGH 496 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~------~~--~~~~~~h 496 (1134)
=+.+ .+-|+..+.... ..-..|.+...+++|.- .+.++.+...+.+|++... +. .-.+.+-
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2122 134555443211 12235777788899983 4677777778899998753 11 1223333
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
.....+|.+++ ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 34566666644 4688888899888776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.63 E-value=33 Score=36.87 Aligned_cols=283 Identities=10% Similarity=0.049 Sum_probs=126.4
Q ss_pred ecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 343 LNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 343 l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.-...+..|+|..+.. -+++|.. |. |+....|..- |....... ...-.-...+|.|..+ ..
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG~~-g~--il~T~DGG~t-------W~~~~~~~------~~~~~~~l~~I~f~~~-~g 74 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVGAY-GT--ILKTTDGGKT-------WQPVSLDL------DNPFDYHLNSISFDGN-EG 74 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEETT-TE--EEEESSTTSS--------EE-----------S-----EEEEEEEETT-EE
T ss_pred cCCCCceEEEEEecCCE-EEEEecC-CE--EEEECCCCcc-------ccccccCC------CccceeeEEEEEecCC-ce
Confidence 33456899999995554 5666753 43 4555444322 11100000 0001223667777643 34
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 501 (1134)
+++ +..+ +.+...+.|+.......-..-.+....+....++. .++.+ ..|.|+.=. ..|+. ......-.+.+.
T Consensus 75 ~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~~-~~G~iy~T~-DgG~tW~~~~~~~~gs~~ 148 (302)
T PF14870_consen 75 WIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELAG-DRGAIYRTT-DGGKTWQAVVSETSGSIN 148 (302)
T ss_dssp EEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEEE-TT--EEEES-STTSSEEEEE-S----EE
T ss_pred EEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEEc-CCCcEEEeC-CCCCCeeEcccCCcceeE
Confidence 444 4455 55555666665543211011122333444444443 33433 345443322 33332 222334456677
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe-CCCCeeE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN-ESEGAIK 580 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd-~~~~~~~ 580 (1134)
.+..+ .+|.++++++.-....-||--...-...-......|.++.|+|++...+.+- .+.|+.=+ ....+.-
T Consensus 149 ~~~r~--~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 149 DITRS--SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETW 221 (302)
T ss_dssp EEEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE
T ss_pred eEEEC--CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCcccc
Confidence 76654 4557777777666677886543333333444567999999999988877652 55566665 2222211
Q ss_pred EE--ecC-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 581 RT--YSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 581 ~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.. ... ...-.+..++|.+++...++|+. |.+ +...+.|+.-...... .-....+.+.|.++.+-++ .+.+|.|
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l 298 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL 298 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence 11 111 11214778899988777776654 433 4455667666555432 1123578888887655555 4567776
Q ss_pred EEE
Q 001160 657 KIL 659 (1134)
Q Consensus 657 ~iw 659 (1134)
.-|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.47 E-value=22 Score=44.73 Aligned_cols=147 Identities=13% Similarity=0.205 Sum_probs=91.9
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEe--------cCCCEEEEEcCCCcEEEEeCCCcccccce--eeecCCCC
Q 001160 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS--------PTLNALVSSGADAQLCMWSIDKWEKLKSR--FIQAPAGR 970 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s--------~d~~~l~s~~~D~~i~iWd~~~~~~~~~~--~~~~~~~~ 970 (1134)
+-|..+.+|++.++.....+.+-+..|..|..- |.=++|...+.--.|.++-+.-.+..... ...... -
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence 458899999999987777777777777776642 22234444444455777765433321111 111100 0
Q ss_pred CCCCcCceEEEECCCCcEEEEEECCeEE--EEeC-C---Cc-cee-------------ccCCC-CCCCCCeEEEEEccCC
Q 001160 971 QSPLVGETKVQFHNDQTHLLVVHESQIS--VYDS-K---LE-CSR-------------SWSPK-DALPAPISSAIYSCDG 1029 (1134)
Q Consensus 971 ~~~~~~v~~~~fspdg~~l~~~~d~~v~--vwd~-~---~~-~~~-------------~~~~~-~~h~~~v~~v~~s~dg 1029 (1134)
......|.++....+|+.+.+|.||.|. +|.. + ++ |-+ .+... ..+..+|..++....-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 0011468899989999999999998543 2222 1 11 110 01111 2457799999998888
Q ss_pred CEEEEEecCCcEEEEeCCC
Q 001160 1030 LLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~~~ 1048 (1134)
..|.+-++.|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999986
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=89.35 E-value=34 Score=36.69 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=90.3
Q ss_pred cEEEEECCCCeeeEEecC------CCCCeEEEEeeccCC----ccEEEEEecCCeEEEEEccCCCceeEecCC-------
Q 001160 478 MIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKES----IQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------- 540 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------- 540 (1134)
.|.+||+.+++.++++.- ..+.+..+.+..... +...++-+..+.|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889999888776542 245677777765332 233444455578999999876654433221
Q ss_pred ------------CCcEEEEEECC---CCCEEEEEeeCCCCCCcEEEEeCCC-----Ce---------eEEEecCccCcce
Q 001160 541 ------------GNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESE-----GA---------IKRTYSGFRKRSL 591 (1134)
Q Consensus 541 ------------~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~-----~~---------~~~~~~~~~~~~v 591 (1134)
...+..++.+| ++++|+.....+ -.+|.+.+ .. .+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11255566655 666666554211 22333221 10 11111 1111245
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCC---eeEEEE-eCCCCCCCcceEEEcc--CCCEEEEE
Q 001160 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNM---NMLTTV-DADGGLPASPRLRFNK--EGSLLAVT 650 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~~~~s~--d~~~l~~~ 650 (1134)
..++++++|..+++--..+.|..|+..+. +....+ ........+..+.+.+ +|.+.+..
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 56889999988888889999999998861 122222 2222234567777877 66554443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.27 E-value=18 Score=39.82 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=67.4
Q ss_pred cceEEEEEecCCCEEEEEcCCCc------EEEEeCCCc--c-----cccceeeecCCCCCC--CCcCceEEEECCCCcEE
Q 001160 925 NRITGLAFSPTLNALVSSGADAQ------LCMWSIDKW--E-----KLKSRFIQAPAGRQS--PLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~------i~iWd~~~~--~-----~~~~~~~~~~~~~~~--~~~~v~~~~fspdg~~l 989 (1134)
+.+.+|.+.+++..+++.+.++. +...++... . ......+....+..- .....-.+++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45778888866666677777776 555555431 1 011111222222110 01234578888888888
Q ss_pred EEE-EC------CeEEEEeCCCcceeccCCC------------CCCCCCeEEEEEccCCCEEEEEec
Q 001160 990 LVV-HE------SQISVYDSKLECSRSWSPK------------DALPAPISSAIYSCDGLLVYAGFC 1037 (1134)
Q Consensus 990 ~~~-~d------~~v~vwd~~~~~~~~~~~~------------~~h~~~v~~v~~s~dg~~l~~~~~ 1037 (1134)
++. .+ ..|..++..+.....+... ...+....+|+++|||+.|+++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 885 45 6788888766554444211 123678899999999997776554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.78 E-value=42 Score=37.06 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=100.7
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEe----cCCCE--EEEEc-CC---CcEEEEeCCCcccccce
Q 001160 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFS----PTLNA--LVSSG-AD---AQLCMWSIDKWEKLKSR 962 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s----~d~~~--l~s~~-~D---~~i~iWd~~~~~~~~~~ 962 (1134)
...+|+....++-+.+||+. |+.+..+.. +++..+..- -+|+. |+.++ ++ .+|++|.+...... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45577777788899999986 555566542 333333321 13432 34443 32 46999988642110 00
Q ss_pred eeecCCCC-CCCCcCceEEEE--CC-CCcEEEE--EECCeEEEEeC----CC----cceeccCCCCCCCCCeEEEEEccC
Q 001160 963 FIQAPAGR-QSPLVGETKVQF--HN-DQTHLLV--VHESQISVYDS----KL----ECSRSWSPKDALPAPISSAIYSCD 1028 (1134)
Q Consensus 963 ~~~~~~~~-~~~~~~v~~~~f--sp-dg~~l~~--~~d~~v~vwd~----~~----~~~~~~~~~~~h~~~v~~v~~s~d 1028 (1134)
.+...... ......+..+|+ +| +|.+.+. ..+|.+..|.+ ++ +.++.+.. ...+..+.....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDE 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecc
Confidence 11110000 011134566666 43 5665555 45788887777 22 23444433 457888888888
Q ss_pred CCEEEEEecCCcEEEEeCCC-----cceeeecCCcccccccccCCCCccEEEeecCC-CCCEEEEEeCCCcEEEEecCCC
Q 001160 1029 GLLVYAGFCDGAIGVFDAET-----LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS-EPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1029 g~~l~~~~~dg~I~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
..+|+.+-+|.-|--|+.+- ++.+...... ....++.-+++...++ .|.+|||.=.+++..||+...+
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~------~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD------GLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS------SB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccccc------ccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 88999998887666666651 2223222211 1233455566665542 3445555556789999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.55 E-value=12 Score=44.74 Aligned_cols=174 Identities=12% Similarity=0.098 Sum_probs=91.8
Q ss_pred CCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEE
Q 001160 852 DSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 852 g~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1134)
+.++.++..+.|.||+.+...... ...++..+...| ... ...|+.+..|- ..|. |..|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCce--eeEEE
Confidence 778888889999999986532211 111122222222 111 22344333332 1121 22222
Q ss_pred E--ecCCCEEEEEcCCCcEEEEeCCCcc--------cc---cceeeecCCCCCCCCcCceEEEEC--CCCcEEEEEEC-C
Q 001160 932 F--SPTLNALVSSGADAQLCMWSIDKWE--------KL---KSRFIQAPAGRQSPLVGETKVQFH--NDQTHLLVVHE-S 995 (1134)
Q Consensus 932 ~--s~d~~~l~s~~~D~~i~iWd~~~~~--------~~---~~~~~~~~~~~~~~~~~v~~~~fs--pdg~~l~~~~d-~ 995 (1134)
. --+...|+.|..||.|.+|.+++-- .. ..+....+.-+........+++++ ...+++|++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 2 2345677778888888888663210 00 000000000001111356788888 77788888654 5
Q ss_pred eEEEEeCCCc-ceeccCCCCCCCCCeEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 001160 996 QISVYDSKLE-CSRSWSPKDALPAPISSAIYSCDG---L---LVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 996 ~v~vwd~~~~-~~~~~~~~~~h~~~v~~v~~s~dg---~---~l~~~~~dg~I~vwd~ 1046 (1134)
.|.||-.... ..........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6777665221 111111122356789999997643 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.40 E-value=49 Score=37.26 Aligned_cols=197 Identities=12% Similarity=0.031 Sum_probs=104.4
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC-CeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-PVY 501 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-~v~ 501 (1134)
+..+..+|.|.-.|..++..+-..... +....+..-.+..+|+ ++.++.++.++..|..+|+.+........ .+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 334467777777777776643211111 0112233333334775 77888899999999889998877765541 111
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.-.+. .+ ..+..++.++.+...|..++........... .+..-....++ .++.+..+ . ++.+.-.|..+|.
T Consensus 147 ~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCC-C-cceEEEEEccCCc
Confidence 11111 11 3444455778888888777777665443321 11111112223 33333221 1 3457777887887
Q ss_pred eEEEecCccCcc---eEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 579 IKRTYSGFRKRS---LGVVQFDTT-----RNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 579 ~~~~~~~~~~~~---v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
.....+...... +........ +..++.++.++.+...|..+++.+-.....
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 766643221100 100001111 122355667788999999999988887653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=88.39 E-value=8.1 Score=44.63 Aligned_cols=88 Identities=9% Similarity=0.169 Sum_probs=55.4
Q ss_pred EECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC
Q 001160 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD 945 (1134)
Q Consensus 866 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D 945 (1134)
.|+-.|..... ..|.+.|.-+.... .+..|..-...-.+.++|+.+.+..-.+. -.+-+.|-|-...++.-+.|
T Consensus 323 vdli~g~~~~~-inh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGF-INHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCccccc-ccccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCC
Confidence 34444444333 34888888888877 55555555555678888987654221111 13457899988888888888
Q ss_pred CcEEEEeCCCcccc
Q 001160 946 AQLCMWSIDKWEKL 959 (1134)
Q Consensus 946 ~~i~iWd~~~~~~~ 959 (1134)
+....|+++..+.+
T Consensus 397 nl~iwyn~d~peqv 410 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQV 410 (1636)
T ss_pred ceEEEecCCcchhh
Confidence 75555577665543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.08 E-value=45 Score=38.06 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce--EEEEec-----CcccceEEEEEecCC------CEEEEEc----
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--VKTKLK-----GHQNRITGLAFSPTL------NALVSSG---- 943 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~--~~~~l~-----~h~~~i~~l~~s~d~------~~l~s~~---- 943 (1134)
-.....|+|.| |+++|++--..|.|++++-.++. .+..+. .-.+....|+++||- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 44668899999 88888765546999999865543 222121 124668899999884 2333221
Q ss_pred ------CCCcEEEEeCCCc--cccc-ceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC
Q 001160 944 ------ADAQLCMWSIDKW--EKLK-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE 994 (1134)
Q Consensus 944 ------~D~~i~iWd~~~~--~~~~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d 994 (1134)
....|.-|.+... .... ..++....... ...-..++|.|||.++++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECC
Confidence 1223444554321 1111 11222221100 123468899999998777444
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.75 E-value=29 Score=34.02 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=92.3
Q ss_pred EEEEEcC--CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEE
Q 001160 469 CIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTM 546 (1134)
Q Consensus 469 ~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1134)
++.+.+. ...|++||+.+|+.+.+-+-....+..=-....+| .+-.-.-.+|.-..+|.++.++.-.+.-.+. =..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 5555554 34799999999998765432211221111111122 2333345678888899888777655443322 122
Q ss_pred EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE----ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT----YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
...|++.|+.+ |+..+++.-|.++.....+ +.+..-..++-+.|- +|...+-.=.+..|...+.++|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 33556666654 3466788888876544333 333222223334443 343333333444566667777777
Q ss_pred EEEEeCCC----------CCCCcceEEEccCCC-EEEEE
Q 001160 623 LTTVDADG----------GLPASPRLRFNKEGS-LLAVT 650 (1134)
Q Consensus 623 ~~~~~~~~----------~~~~v~~~~~s~d~~-~l~~~ 650 (1134)
+..++..+ +....+.+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66654321 122457788888774 44444
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=50 Score=36.43 Aligned_cols=278 Identities=10% Similarity=0.019 Sum_probs=130.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...+.+|+|..+.. .+++|. +| .||...++..- |...... +......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~~-------~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSLD-------LPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECccC-------CcccccceeeeEEcCC-cEEEe
Confidence 45788999986554 566665 34 34444333221 1110000 1112234777888654 34444
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVC 504 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~ 504 (1134)
+..+.|.. ..+.|+.......-.........+....++. .++. +..+.|..=+ ..|+.-..+. .-.+.+.++.
T Consensus 106 -G~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~ 179 (334)
T PRK13684 106 -GQPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLR 179 (334)
T ss_pred -CCCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEE
Confidence 34453322 3333444332211000111112222222222 2333 3344443222 2333322222 2245677888
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.++ +.+ +..+..|.+..= .+.+.. ..........++++.+.++++.++++. .+.+.+=....|..-..
T Consensus 180 ~~~~--g~~-v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 180 RSPD--GKY-VAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSK 250 (334)
T ss_pred ECCC--CeE-EEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCcccc
Confidence 7654 344 455555655421 122222 222233456789999999998877763 34443322333332221
Q ss_pred ecCc---cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEE
Q 001160 583 YSGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 583 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 658 (1134)
.... ....+..+.+.+++..+ .++.+|.+. ...+.++........ .-....+.+.|..+++.++ .+..|.|.-
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence 1111 11246778888877654 455677655 345555554444321 1112466777777666655 566778777
Q ss_pred EE
Q 001160 659 LA 660 (1134)
Q Consensus 659 w~ 660 (1134)
|+
T Consensus 328 ~~ 329 (334)
T PRK13684 328 YV 329 (334)
T ss_pred ec
Confidence 65
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.28 E-value=2.7 Score=42.84 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=54.7
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCCcccccce-ee-ecCCCC----CCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCc
Q 001160 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSR-FI-QAPAGR----QSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLE 1005 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~-~~-~~~~~~----~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~ 1005 (1134)
+..++.+|+....+|.+++||+.+++..-.. .+ ...... ......|..+.++.+|.-+++-++|....|+.+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999998754322 00 001100 01225688899999999998877888999998666
Q ss_pred ceec
Q 001160 1006 CSRS 1009 (1134)
Q Consensus 1006 ~~~~ 1009 (1134)
+...
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.17 E-value=26 Score=41.26 Aligned_cols=129 Identities=9% Similarity=0.103 Sum_probs=71.9
Q ss_pred eEEEECCCCcEEEE-EECC-----eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001160 978 TKVQFHNDQTHLLV-VHES-----QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 978 ~~~~fspdg~~l~~-~~d~-----~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~ 1051 (1134)
..+.|-|.|..+++ +.|+ .|..+..+|-....+....+-...+..++|.-....++.+ ..+.|++|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 45899999999999 5443 4777776554443332222224556677777666655544 566899998765432
Q ss_pred eeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCccccCCCCCCCCCCCC
Q 001160 1052 RCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLP 1118 (1134)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~ 1118 (1134)
-- ....+.|. +. -+.|+|...+.|.-.+.. .|-.-.++....+-.-..|+|+|-.+
T Consensus 329 YL--K~e~~ip~------~s--~vkwhpe~~nTl~f~d~~-~I~~V~f~~k~~~~~s~~p~d~g~~~ 384 (1243)
T COG5290 329 YL--KVERQIPG------IS--YVKWHPEEKNTLLFRDGE-RILRVFFSEKKTHHGSEYPFDNGTSY 384 (1243)
T ss_pred EE--EEeecCCC------cc--eeeeccccCcEEEEecCC-eEEEEEeehhhhcCCcccCccCCceE
Confidence 21 11111111 11 368888766666654433 33333333333333345577777665
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.13 E-value=52 Score=36.18 Aligned_cols=109 Identities=8% Similarity=-0.040 Sum_probs=51.5
Q ss_pred EEEEEcCC-----CcEEEEECCCCee---eEEecCCCCCe--EEEEeeccCCccEEEEEec-----CCeEEEEEccCCCc
Q 001160 469 CIVTCGDD-----KMIKVWDVVAGRK---QYTFEGHEAPV--YSVCPHHKESIQFIFSTAI-----DGKIKAWLYDYLGS 533 (1134)
Q Consensus 469 ~l~sg~~d-----~~i~iwd~~~~~~---~~~~~~h~~~v--~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~ 533 (1134)
+++.|+.+ ..+..+|+.+.+. ...+..-..+. .+++.. ++.+.+.|+. ...+..||+.+.+-
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~---~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK---DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE---CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55566654 3566777776553 12222111111 122221 2356666664 23577788776543
Q ss_pred eeEecCC-CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 534 RVDYDAP-GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 534 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
...-... .......+..-+++..+.++.+......+..||+.+.+..
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 3221111 1122222233456666676643222233678898876653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.04 E-value=47 Score=37.95 Aligned_cols=276 Identities=15% Similarity=0.098 Sum_probs=133.6
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
....+|.++.|.-.|. + -.|+.|| +..||..+++.++...- .....|..+.-+-.| .|
T Consensus 162 l~d~~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s~------------------~~dk~I~al~~d~qg-~L 219 (671)
T COG3292 162 LKDTPVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLASP------------------PLDKAINALIADVQG-RL 219 (671)
T ss_pred ccCccceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCCC------------------cchhhHHHHHHHhcC-cE
Confidence 3567899999999997 3 3466554 66678777776543110 111345555544444 45
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCCC--CCe
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGHE--APV 500 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h~--~~v 500 (1134)
-+|+.+| |.+.+..+.+....- . .-..+.|..+.=..+|. +=.|+..|..+. ....+..... .+-|. ..|
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~-~-~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG-P-MLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEeccc-eEEEchhhccccccC-C-CCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccccc
Confidence 6677777 777776652211100 0 01123344444334443 444555543322 2233222222 22222 233
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC--CCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.++.. +.+| -|-+++.++.+++-+-+-..........+..+..++.+| .+..+-... ..+.+.+-+..+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 33332 3333 455666666655433221111111111111222222222 111111111 12335556666777
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.+++........|+.+++..++ .+-.|+...-+..|+..+ +.......+.. ..+|..+.=.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~-ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCc-ccceeeeeecCCCC-EEEeccCCeEe
Confidence 7766554444467777777744 455566554466666665 33333332222 24677777788888 77788887754
Q ss_pred E
Q 001160 658 I 658 (1134)
Q Consensus 658 i 658 (1134)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.01 E-value=5.9 Score=49.39 Aligned_cols=139 Identities=14% Similarity=0.213 Sum_probs=82.1
Q ss_pred eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE--------cCCCCEEEEEeCCCeEEEEEc
Q 001160 366 TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW--------GPDGLMLGVAFSKHIVHLYTY 437 (1134)
Q Consensus 366 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~--------spdg~~las~~~dg~i~iwd~ 437 (1134)
+.|+.+.+|+++++..... +.+-...|..+.. -|.=+++.+...--.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence 3488999999998654432 3334444544442 333344544445555666655
Q ss_pred CCCCcccee------eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC----CC---e-e--------------
Q 001160 438 NPTGELRQH------LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV----AG---R-K-------------- 489 (1134)
Q Consensus 438 ~~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~----~~---~-~-------------- 489 (1134)
.-.+..... ..+......|+|+....+|+ .++ +|.|| .+|.+. +| + +
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 332221111 12222345688999888887 444 55566 455432 11 1 1
Q ss_pred --eEEec-CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC
Q 001160 490 --QYTFE-GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY 530 (1134)
Q Consensus 490 --~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~ 530 (1134)
+-.+. .+..+|..+++..+. ..+.+-+..++|.+||+..
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 11223 567799999986655 7899999999999999875
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.94 E-value=26 Score=43.01 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=121.7
Q ss_pred EEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001160 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 778 ~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
.++..-|..+.+|+.+|.+.+|.+........... . ..... +...-+ ..+|..+...+.-.++.+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~---------~~~~~----~~~~~~-kk~i~~l~~~~~~~~ll~ 84 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V---------TETVK----FEKEFS-KKPINKLLVCASLELLLI 84 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h---------cchhH----Hhhhhc-cchhHHHhhcchhcchhe
Confidence 34555677899999999999998764322111000 0 00000 111112 466777777676667777
Q ss_pred EeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCC-----CC--cEEEEEe-CC-CcEEEEEcCCceEEEEecCcccceE
Q 001160 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ-----DN--NIIAIGM-ED-SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 858 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-----~~--~~lasg~-~d-g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
-+|+.|.++++.+.+.... ..+...+ ..|+.+ .+ .+.+... .. .....|+-+.+..+..--+-.....
T Consensus 85 l~dsqi~~~~l~~~~~~~~-~~~~Kg~--~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (877)
T KOG2063|consen 85 LSDSQIAVHKLPELEPVPS-GTRLKGA--SLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPK 161 (877)
T ss_pred ecCCcceeeecCccccccc-ccccccc--eeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchh
Confidence 7789999998877665211 1111111 112110 11 1222222 11 1223344333332222222222233
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcce-
Q 001160 929 GLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS- 1007 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~- 1007 (1134)
+++| .+..+.++-.+....+|.-.++..... ........ ..-..+.--+++..++.+.|+...+-|..|...
T Consensus 162 ~~~~--~~~~~c~~~~~~~~ii~~~~~~~~~~~-~~s~~~~~----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~ 234 (877)
T KOG2063|consen 162 ARAW--CGHIVCLGLKKSYYIINNTSKGVGPNL-FPSSMDNE----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQ 234 (877)
T ss_pred hhcc--cceeEEEeecceeEEEecCCCccccce-eeeccccc----cCCCeEEEecCCceEEEccCceEEEEecCCcccC
Confidence 3333 355555554434455555555432221 11111101 123456666778788888888888888766652
Q ss_pred eccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+.-... .....++. .+.-|+++- .++.|.||++.++.++.++.
T Consensus 235 ~~~l~w---s~~P~~v~--~~~PYlIa~-~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 235 RGTLVW---SEVPLSVV--VESPYLIAL-LDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred CCceEe---cccchhhc--ccCceEEEE-ccccEEEEeccCHHHhhccc
Confidence 110000 11111111 234466655 45699999999998887773
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.6 Score=40.24 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.9
Q ss_pred cCeEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 001160 409 ISVNRCVWGPDG------LMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 409 ~~V~~i~~spdg------~~las~~~dg~i~iwd~~~ 439 (1134)
..|..++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 3788899999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=86.70 E-value=56 Score=36.15 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=104.5
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec--cCCccE--EEEEe-cC---CeEEEEEccCCCc-eeEecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH--KESIQF--IFSTA-ID---GKIKAWLYDYLGS-RVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~~~--l~s~~-~d---~~i~~wd~~~~~~-~~~~~~ 539 (1134)
+++....++-+.+||+ .|+.+..+. .+..+.+.... .-+|.. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777778889999995 666777664 34455544321 111222 34443 32 5799998874322 222221
Q ss_pred -------CCCcEEEEEE--CC-CCCEEEEEeeCCCCCCcEEEEeCC---CC----eeEEEecCccCcceEEEEEeCCCCE
Q 001160 540 -------PGNWCTMMAY--SA-DGTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 540 -------~~~~v~~~~~--s~-~~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
....++.+|+ ++ +|.+.+.... ++|.+..|.+. .+ +++++|.... .+..|.......+
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1224667776 33 4665555442 35667766653 33 4678887655 5778888888899
Q ss_pred EEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEc--cCCC-EEEEEeC-CCcEEEEECCCc
Q 001160 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFN--KEGS-LLAVTTS-DNGIKILANSDG 664 (1134)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~~~~~-dg~i~iw~~~~~ 664 (1134)
|+.+-++.-|.-|+.+. ++.+.......-...|-.+++- .+++ +|++.+. +++..||+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998888888762 2222222222223456666664 3443 4544444 778999997654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.65 E-value=41 Score=34.58 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=118.3
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
...-..++-+|||..-.++. .+.|--.|-.+++....-.+....-..+..-| |+..-++-+.. -|.-.|-++.+. .
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev-t 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV-T 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-E
Confidence 45567789999999888887 67788888888888777666666677888888 44444332222 344445444432 2
Q ss_pred Ee----cCcccceEEEEEecCCCEEEEEcC---------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC
Q 001160 919 KL----KGHQNRITGLAFSPTLNALVSSGA---------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 919 ~l----~~h~~~i~~l~~s~d~~~l~s~~~---------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
++ +.-.+......|.++|++..|+.. .+.|++|+.-.|. ....++..||
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------------------gpyGi~atpd 199 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG------------------GPYGICATPD 199 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC------------------CCcceEECCC
Confidence 22 223345778889999998888753 2345666554332 4577899999
Q ss_pred CcEEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 986 QTHLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 986 g~~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
|...+++ .++-|-..|.....-..+.........-..+--+|.|+.-++-...+.+.-||-.+
T Consensus 200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 9987774 55666666662223333333333223344455567777777766677777777654
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.16 E-value=24 Score=32.11 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=66.6
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEEcCCc--------eEEEEecCcccceEEEEEec-----CCCEEEEEcCCCcEEEEeCC
Q 001160 888 AFHPQDNNIIAIGMEDSSVQIYNVRVD--------EVKTKLKGHQNRITGLAFSP-----TLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~dg~i~iwd~~~~--------~~~~~l~~h~~~i~~l~~s~-----d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.|.. ...-|+.++.-|+|.|++.... ..+..|. -...|++|+-.+ +...|+.|+ ...+..||+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4544 4457888888899999986633 2334443 445688887654 345666666 4569999999
Q ss_pred CcccccceeeecCCCCCCCCcCceEEEEC---C-CCcEEEEEECCeEEEEeCCCcce
Q 001160 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFH---N-DQTHLLVVHESQISVYDSKLECS 1007 (1134)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fs---p-dg~~l~~~~d~~v~vwd~~~~~~ 1007 (1134)
....+- .+... .++.++.+- . +..+++++++..|.-||.++..+
T Consensus 82 ~N~d~F---yke~~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 82 NNSDLF---YKEVP------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred cCchhh---hhhCc------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 866432 11111 356666653 2 34456667777788787766553
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.84 E-value=1e+02 Score=38.47 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=100.6
Q ss_pred CCceEEEEec---c----CCCEEEEEeCCeEEEEECCCC---------------eEEEEecC---CCCceEEEEEcCCCC
Q 001160 840 EESAACIALS---K----NDSYVMSASGGKVSLFNMMTF---------------KVMTMFMS---PPPAATFLAFHPQDN 894 (1134)
Q Consensus 840 ~~~i~~~~~s---~----dg~~la~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~~~ 894 (1134)
..+|..|+|+ . ..++|++-....+.|+...-. .++..+.. ...+...++|.|.+.
T Consensus 79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~ 158 (765)
T PF10214_consen 79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ 158 (765)
T ss_pred CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc
Confidence 7788999998 2 235777777777888772211 12233321 123466778887677
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
+.+|+.+..|...||++...... +. .... +.....|.| +.|.+.-
T Consensus 159 ~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~------------------ 203 (765)
T PF10214_consen 159 RQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL------------------ 203 (765)
T ss_pred ceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc------------------
Confidence 77888888888888887211100 00 1111 111112222 1221110
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccC--CCEEEEEecCCcEEEEeCCCc
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD--GLLVYAGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~d--g~~l~~~~~dg~I~vwd~~~~ 1049 (1134)
..-..+.|.++-..|+++....+.++|++......+.........|..+.-+++ +..++. +...|...++.+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 123578888998999999999999999944433221222223678999999887 333333 3467888888873
|
These proteins are found in fungi. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.70 E-value=5.9 Score=43.09 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=87.1
Q ss_pred EecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecC-CCC----CeE-EEEeeccCCccEEEEEecCC
Q 001160 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEG-HEA----PVY-SVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 449 ~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~-h~~----~v~-~i~~~~~~~~~~l~s~~~d~ 521 (1134)
+..-...|..+-..|||+.+++.+| ..+.++++.+.... +++-. ..+ .|+ ++.. -..|.-++.+..||
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~l--L~Gg~SLLv~~~dG 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYL--LSGGFSLLVVHEDG 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHH--HhCceeEEEEcCCC
Confidence 4445567888899999997777776 46788887654321 11111 111 111 1111 11336788889999
Q ss_pred eEEEE-EccCCCce-----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEE
Q 001160 522 KIKAW-LYDYLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 522 ~i~~w-d~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~ 595 (1134)
.|.-| |.+..... ..+......+..+.-..+.+-+++-. ..|++..+.....+.+-.-.... ....++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~----~~G~L~~f~st~~~~lL~~~~~~--~~~~~~ 364 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLY----RNGTLQSFYSTSEKLLLFERAYQ--APQLVA 364 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEc----CCCceeeeecccCcceehhhhhc--Ccceee
Confidence 99888 43332221 11222222333333222233344432 25556665544333322222222 455688
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 596 FDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
++|.+.++++- ..|.++++.+++..+.
T Consensus 365 ~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 365 MSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eCcccchheee-cCCceEEEEecCCCCC
Confidence 99999988875 4567999888775543
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=85.07 E-value=55 Score=42.67 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=47.2
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGV 1043 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~v 1043 (1134)
..|+.++.-.+.++++....|.+....-.+. ... ....+..+.|..++......+ ++...+|.++-
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~k~g~-p~~-l~~~gl~G~ik~l~lD~~~nL-~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQKPGR-PVP-LSRPGLSGEIKDLALDEKQNL-YALTSTGELFR 768 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCccccccCCCC-Ccc-CCCCCCCcchhheeeccccce-eEecCCCceee
Confidence 4688899988888888888888888874333 222 223345789999999887664 44557887665
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.83 E-value=15 Score=40.74 Aligned_cols=144 Identities=14% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCcEEE-EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC--------CEEEEEcCCCcEEEEeCC-Ccccccce
Q 001160 893 DNNIIA-IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL--------NALVSSGADAQLCMWSID-KWEKLKSR 962 (1134)
Q Consensus 893 ~~~~la-sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~--------~~l~s~~~D~~i~iWd~~-~~~~~~~~ 962 (1134)
+..+|. .|.....++--|+.-|+.+..+..|.+. -+.|.|+. +.|+-.| +..|.-.|.. .|..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCceeee
Confidence 455444 4555667888899999999999988775 46777752 3455444 4434333332 22221111
Q ss_pred eeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001160 963 FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAI 1041 (1134)
Q Consensus 963 ~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I 1041 (1134)
-.....+. ..-.+.. .....++|+ +..|.|++||.-+...+...+. ....|..+..+.+|+++++.+ ...+
T Consensus 555 esKdY~tK----n~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 555 ESKDYKTK----NKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred eehhcccc----ccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence 11111111 1112222 223346666 6778999999855544444433 378999999999999877654 4466
Q ss_pred EEEeCC
Q 001160 1042 GVFDAE 1047 (1134)
Q Consensus 1042 ~vwd~~ 1047 (1134)
-+-|+.
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 666653
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.48 E-value=89 Score=36.48 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=72.2
Q ss_pred EEEEEcCC-----CcEEEEECCCCeeeEEecC---CC-CCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCCCce
Q 001160 469 CIVTCGDD-----KMIKVWDVVAGRKQYTFEG---HE-APVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSR 534 (1134)
Q Consensus 469 ~l~sg~~d-----~~i~iwd~~~~~~~~~~~~---h~-~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~ 534 (1134)
+.+.|+.+ ..+..+|+.+.+....-.. .. ..-.+++. . ++.+.+.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55556554 3688899887664331110 01 11112222 1 235666666543 4667777654322
Q ss_pred eEec-----CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC---ccCcceEEEEEeCCCCEEEEE
Q 001160 535 VDYD-----APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG---FRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 535 ~~~~-----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
..-. ...... .++ .-+++.++.++.++.....+.+||+.+.+....-.. .......++ ..-+++.++.|
T Consensus 308 ~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence 2110 001111 122 235666666664332235699999988765443211 111011122 22345666677
Q ss_pred eCC--------------CeEEEEECCCCeeE
Q 001160 607 GDE--------------FQIKFWDMDNMNML 623 (1134)
Q Consensus 607 ~~d--------------g~i~iwd~~~~~~~ 623 (1134)
+.. ..+.++|+.+.+-.
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEE
Confidence 642 24788998877654
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.09 E-value=18 Score=46.02 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=43.0
Q ss_pred CceEEEECCCCcEEEEEECCeEEEEeCCCccee-ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001160 976 GETKVQFHNDQTHLLVVHESQISVYDSKLECSR-SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~-~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~ 1051 (1134)
.+.+..+...+..+.....+.+.+|+....... .+... ++. .+.++..++++..||.+.+||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN-GQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc-ccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 344444444555555555566666666333332 22221 111 188999999999999999999999865
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.55 E-value=27 Score=39.18 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred ccEEEeecCCC--CCEEEEEeCCCcEEEEecCCCccccCCCCC
Q 001160 1071 HPLVIAPHPSE--PNQIALGMSDGAVHVVEPSDAELKWGGTPS 1111 (1134)
Q Consensus 1071 ~~~~~~~~~~d--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1111 (1134)
...-++|+|.. ...|+.-+.|..+++|+++.....|..+++
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 34456666642 356666778899999999888877766554
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=83.53 E-value=75 Score=34.89 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred cEEEEEecC-----CeEEEEEccCCCce---eEecCCCCcE--EEEEECCCCCEEEEEeeC-CCCCCcEEEEeCCCCeeE
Q 001160 512 QFIFSTAID-----GKIKAWLYDYLGSR---VDYDAPGNWC--TMMAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d-----~~i~~wd~~~~~~~---~~~~~~~~~v--~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++.|+.+ ..+..+|+.+.... ..+....... .+++. -+++..+.++.. ......+..||+.+.+..
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 566666654 34666777665431 1111111111 12222 245555666531 112346888998876643
Q ss_pred EE--ecCccCcceEEEEEeCCCCEEEEEeCCC----eEEEEECCCCee
Q 001160 581 RT--YSGFRKRSLGVVQFDTTRNRFLAAGDEF----QIKFWDMDNMNM 622 (1134)
Q Consensus 581 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~ 622 (1134)
.. +.... .....+...+++..+.||.++ .+.+||..+.+-
T Consensus 153 ~~~~~p~~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 153 ELPDFPGEP--RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCCCCCCC--CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 32 22111 112222334566677777553 356888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=75 Score=38.00 Aligned_cols=193 Identities=11% Similarity=0.007 Sum_probs=101.1
Q ss_pred ceEEEEeccCCCEEEEEe-CC-eEEEEECCCCeE-----EEEecCCCCceEEEEEcCCCCcEEEE-EeCCC--cEEEEEc
Q 001160 842 SAACIALSKNDSYVMSAS-GG-KVSLFNMMTFKV-----MTMFMSPPPAATFLAFHPQDNNIIAI-GMEDS--SVQIYNV 911 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg-~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~~las-g~~dg--~i~iwd~ 911 (1134)
.+.+++.|+++..+|... ++ .+.+..+..+.. ...+. ....+.-.|.+ ++.+-.+ +..++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~ 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC
Confidence 678899999999998877 44 466665533322 11122 23456667777 4433322 11122 2555543
Q ss_pred CCceEEEE-ecCccc-ceEEEEEecCCCEEEEEcC---CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 912 RVDEVKTK-LKGHQN-RITGLAFSPTLNALVSSGA---DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 912 ~~~~~~~~-l~~h~~-~i~~l~~s~d~~~l~s~~~---D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
+|+.... .....+ .|+.+..|+||..+|.... .++|.|=-+.....-. ..+..+..-......+..++|..++
T Consensus 441 -~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 -DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred -CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCC
Confidence 4443211 112223 7999999999988776543 3556555443321111 1111111000111358899999999
Q ss_pred cEEEEE--ECCeEEEEeC--CCcceeccCCCCCCCCCeEEEEEccCCC-EEEEEecCCcE
Q 001160 987 THLLVV--HESQISVYDS--KLECSRSWSPKDALPAPISSAIYSCDGL-LVYAGFCDGAI 1041 (1134)
Q Consensus 987 ~~l~~~--~d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~~~~~dg~I 1041 (1134)
.+++.+ .++...+|-+ .+.....-. .+.-..+.+++-..+.+ .++.+..++.|
T Consensus 519 sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~--~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQVDGSTPPASA--PAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred EEEEEeccCCCCcceEEEecCCcCccccc--ccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 988854 3334445544 444332111 11245677777777666 45543555554
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=83.25 E-value=81 Score=35.05 Aligned_cols=41 Identities=10% Similarity=-0.091 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEee
Q 001160 521 GKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~ 561 (1134)
..+.+||..+.+-...-.... .........-+++..+.++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 467888877654433211111 11111222345677777765
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.21 E-value=0.41 Score=52.25 Aligned_cols=123 Identities=17% Similarity=0.286 Sum_probs=88.6
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.++.+-.+..++.-..++|.-+|..+++.+-..+.+.+||+.+...-. +-.+-...-.-+.
T Consensus 64 agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~ 124 (615)
T KOG2247|consen 64 AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLA 124 (615)
T ss_pred hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHh
Confidence 445555555666777888988998777777888999999998653211 0112222233378
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
|++.+..++.+...|.+.|++..+..... ....|..+++++++.+.+. .+.++.|..+.+-.
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 99999999999999999999988765443 3333999999999999885 77788787665544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.51 E-value=93 Score=35.21 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=54.0
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~ 918 (1134)
.-.|..+..++.|..+|-.+ +|.+..+=...+..-..+......|+|=.|+- +.+++. .+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i-~~~~ft-ss----------------- 163 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV-AERFFT-SS----------------- 163 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc-cceeec-cC-----------------
Confidence 55678899999999998887 66544332222222233332333344444443 222221 10
Q ss_pred EecCcccceEEEEEecCC---CEEEEEcCCCcEEEEeCCCccc
Q 001160 919 KLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
..-.+...+|+|+. ..|..-+.|.++|+||+.....
T Consensus 164 ----~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 164 ----TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred ----CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 01124456777764 5666777788999999887553
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=81.81 E-value=41 Score=30.67 Aligned_cols=117 Identities=7% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-----CCCEEEE
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK-----NDSYVMS 857 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-----dg~~la~ 857 (1134)
....|++++..|.|.|++.......... ....++ .+.- ...|++++-.+ +...|+.
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~------------~LNi----n~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGR---QDSDIS------------FLNI----NQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred CceeEEEEecCCEEEEECCCcccccccc---ccCcee------------EEEC----CCceEEEEEEecCCCCCcCEEEE
Confidence 3345777777888888875432221110 000000 1111 56777776544 4568889
Q ss_pred EeCCeEEEEECCCCeEEEEecCCCCceEEEEEc---CCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001160 858 ASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFH---PQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 858 ~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s---~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
|+...+..||+.....+..-.- ...|.++.+- .....++++| -+..|.-||....+...+.
T Consensus 70 Gt~t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 70 GTQTSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred eccceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 9999999999998766544332 3566676663 2123445444 4567888887666655554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.55 E-value=8.1 Score=39.41 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=50.3
Q ss_pred EecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-------cCCcCeEEEEEcCCCCEEEEE
Q 001160 354 FHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-------DAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 354 ~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~i~~spdg~~las~ 426 (1134)
+..++.+ |.+-+.+|.+++||+.+++.+... .. ...++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S-----------i~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS-----------IAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc-----------HHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556765 555677999999999998876542 11 111222 466779999999999877765
Q ss_pred eCCCeEEEEEcCCC
Q 001160 427 FSKHIVHLYTYNPT 440 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~ 440 (1134)
+ +|....|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 4 577888887653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.53 E-value=44 Score=34.53 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=75.7
Q ss_pred EEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC----CeeEEEec-CccCcceEEEEEeC
Q 001160 524 KAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE----GAIKRTYS-GFRKRSLGVVQFDT 598 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~-~~~~~~v~~~~~~~ 598 (1134)
.+||+.+.+..-..........+-++-+||+++.+++. .++...+++++..+ ......-. -......-+...-+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45777665543322223334445567789999988874 44566788888654 11111100 01111344566678
Q ss_pred CCCEEEEEeCCC-eEEEEECCC-Ce-eEE--EEeC---CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 599 TRNRFLAAGDEF-QIKFWDMDN-MN-MLT--TVDA---DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 599 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
||+.++.||... +..+|.... .. ... .+.. .....--..+...|||++++.+..+. .|||..++
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 999999988664 345555422 11 111 1110 11111223567789999998887654 46687766
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=1.3e+02 Score=36.11 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC-cEEEEEcCCceE-----EEEecCcccceEEEEEecCCCEEEEEcC--CC--cEEEEe
Q 001160 883 AATFLAFHPQDNNIIAIGMEDS-SVQIYNVRVDEV-----KTKLKGHQNRITGLAFSPTLNALVSSGA--DA--QLCMWS 952 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg-~i~iwd~~~~~~-----~~~l~~h~~~i~~l~~s~d~~~l~s~~~--D~--~i~iWd 952 (1134)
.+.+.+.|+ ++..+|....++ .+++..+..+.. ...+. ...++.-.|.+++. +-++.. ++ .+++..
T Consensus 364 ~~~s~avS~-~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~ 439 (599)
T PRK13613 364 PLRRVAVSR-DESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQ 439 (599)
T ss_pred CccceEEcC-CCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcCCCC-EEEecCCCCCceEEEEEc
Confidence 678999999 778777776655 566655433322 12233 23467778888774 444422 22 255554
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EE---CCeEEEEeC----CCc-ceeccCC-CCCCCCCeEE
Q 001160 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS----KLE-CSRSWSP-KDALPAPISS 1022 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~v~vwd~----~~~-~~~~~~~-~~~h~~~v~~ 1022 (1134)
- +++... +... ... ...|..+..|+||.+++. .. .++|.|--+ .+. .+..... ... ...+.+
T Consensus 440 ~-~G~~~~---V~~~-~l~--g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~ 511 (599)
T PRK13613 440 G-DGEPVE---VRTP-ELD--GHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTD 511 (599)
T ss_pred C-CCcEEE---eecc-ccC--CCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccce
Confidence 3 444321 2221 111 136999999999999888 32 256665544 332 1211111 112 335999
Q ss_pred EEEccCCCEEEEEe-cCCcEEEEeCC
Q 001160 1023 AIYSCDGLLVYAGF-CDGAIGVFDAE 1047 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~-~dg~I~vwd~~ 1047 (1134)
++|..++.+++.+. .++...+|-+.
T Consensus 512 ~~W~~~~sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 512 MSWAGDSQLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred eEEcCCCEEEEEeccCCCCcceEEEe
Confidence 99999999877553 33345555443
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.00 E-value=34 Score=36.30 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=65.7
Q ss_pred CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe------cCCeEEEEEccCCCceeEec----CCCCcEE
Q 001160 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYD----APGNWCT 545 (1134)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~----~~~~~v~ 545 (1134)
-..|++||..+.+...--.+-.+.|.++.|..+. ++++.|. ....+..||+.+..-...-. .-.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~--~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN--QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCC--EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 3469999988877665555677889999997432 6666664 35568889887654322222 1235777
Q ss_pred EEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 546 MMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 546 ~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.+.+.. |+..+..++...++...|..||-.....+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 777643 4444444443345667788887655444433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=80.56 E-value=66 Score=32.19 Aligned_cols=111 Identities=17% Similarity=0.287 Sum_probs=67.2
Q ss_pred eEEEEeccCCCEEEEEeCCeEEEEECC--CCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC------cEEEE---Ec
Q 001160 843 AACIALSKNDSYVMSASGGKVSLFNMM--TFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS------SVQIY---NV 911 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg------~i~iw---d~ 911 (1134)
...++-+..+.++++++...|.+|++. ..+.+.+|.. -+.|..++++. .|++|++--.+. .+|+| +.
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 344555553445455668889999988 4566777774 37899999999 899999864332 45664 22
Q ss_pred C--CceEEE-EecCc---------------------ccceEEEEEecC-CCEEEEEcCCCcEEEEeCCCcc
Q 001160 912 R--VDEVKT-KLKGH---------------------QNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 912 ~--~~~~~~-~l~~h---------------------~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
. ..+.+. .+-|| +.++.+++--|- |++|+ |+ ++++.+|.+....
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQT 166 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEE
Confidence 2 112221 22232 223556666553 55444 44 5679999887644
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=1.3e+02 Score=35.56 Aligned_cols=152 Identities=7% Similarity=-0.040 Sum_probs=89.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC-ccccccee
Q 001160 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK-WEKLKSRF 963 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~ 963 (1134)
.+++.++ ++..+|....++.++++... +.....+. ...++.-.|.++| .+-++..+...++..... |+.. .
T Consensus 337 ~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---~ 408 (557)
T PRK13615 337 DAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---P 408 (557)
T ss_pred ccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---E
Confidence 7889999 88888888778888888665 22222233 2346677788877 444444333455554433 2321 1
Q ss_pred eecCCCCCCCCcCceEEEECCCCcEEEEE-E---CCeEEEEeC--CCc---ce-ec-cCCCCCCCCCeEEEEEccCCCEE
Q 001160 964 IQAPAGRQSPLVGETKVQFHNDQTHLLVV-H---ESQISVYDS--KLE---CS-RS-WSPKDALPAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 964 ~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~---d~~v~vwd~--~~~---~~-~~-~~~~~~h~~~v~~v~~s~dg~~l 1032 (1134)
+.... .. ...|..+..|+||.+++.- . .++|.|--+ .+. .+ .. .....+ ...+.++.|..+++++
T Consensus 409 v~v~~-~~--~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~la 484 (557)
T PRK13615 409 VAVSW-TA--TGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVA 484 (557)
T ss_pred eeccc-cC--CCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEEE
Confidence 11111 11 1469999999999998883 2 356666444 222 22 11 111122 3489999999999976
Q ss_pred EEEe---cCCcEEEEeCCC
Q 001160 1033 YAGF---CDGAIGVFDAET 1048 (1134)
Q Consensus 1033 ~~~~---~dg~I~vwd~~~ 1048 (1134)
+.+. .+..+++..+..
T Consensus 485 Vl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEeccCCCCceEEEEECCC
Confidence 6652 234566666663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1134 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-08 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-04 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-04 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-04 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-04 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-04 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-04 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-04 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-04 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-04 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-04 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-04 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-04 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 6e-04 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 8e-06 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-05 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-05 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 5e-05 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 5e-05 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 6e-05 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1134 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.7 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.5 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.49 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.34 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.3 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.27 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.26 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.24 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.22 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.22 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.21 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.19 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.18 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.16 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.15 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.15 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.11 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.11 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.1 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.09 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.06 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.04 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.02 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.0 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.0 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.94 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.82 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.8 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.77 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.76 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.75 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.69 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.68 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.64 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.63 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.62 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.59 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.59 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.56 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.54 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.54 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.54 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.53 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.49 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.48 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.46 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.45 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.44 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.41 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.39 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.3 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.3 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.25 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.24 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.23 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.23 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.22 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.21 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.21 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.2 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.18 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.09 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.07 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.04 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.95 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.9 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.85 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.77 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.76 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.69 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.64 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.61 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.58 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.57 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.52 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.45 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.4 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.4 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.35 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 97.31 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.31 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.27 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 97.24 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.1 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.09 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.05 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.04 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.03 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.02 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 97.0 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.96 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.92 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.85 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.7 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.64 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.61 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.48 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.46 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.43 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.38 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.32 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.25 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.21 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.19 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.08 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.06 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.98 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.84 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.81 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.79 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.65 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.64 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.55 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.32 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.99 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.93 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.88 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.57 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.55 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.33 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.85 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 91.97 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.63 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.41 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.05 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.0 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.7 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.22 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.55 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 85.77 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 82.14 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.96 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-68 Score=647.05 Aligned_cols=565 Identities=21% Similarity=0.362 Sum_probs=484.9
Q ss_pred EEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC
Q 001160 341 RTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 341 ~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
..|. |.+.|+|++|||||+ +||+|+.|++|+|||. +++.+.+ +.+|.+.|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 3455 999999999999998 6889999999999995 5555543 6789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
|++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ +|++++.|+.+++|+... .......+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNG-QLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTC-CEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeeccccc-ceeeeccCCCCc
Confidence 9999999999999999975 44433 7889999999999999999 899999999999999654 456677889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
|.++.++++. ..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.
T Consensus 142 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSPDG--QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred eeeeeeecCC--ccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence 9999998765 789999999999999865 3455566778889999999999999999874 788999995 5788
Q ss_pred EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
+..+.+|.. .|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|
T Consensus 214 ~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 214 LQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp EEEEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 888998887 8999999999999999999999999996 46677777765 4479999999999999999999999999
Q ss_pred ECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccc
Q 001160 660 ANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPR 739 (1134)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1134)
+.... ....+
T Consensus 290 ~~~~~--~~~~~-------------------------------------------------------------------- 299 (577)
T 2ymu_A 290 NRNGQ--LLQTL-------------------------------------------------------------------- 299 (577)
T ss_dssp ETTSC--EEEEE--------------------------------------------------------------------
T ss_pred eCCCc--EEEEE--------------------------------------------------------------------
Confidence 96432 11111
Q ss_pred cccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcc
Q 001160 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1134)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 819 (1134)
.+|...|.+++|+|+++.+++++.|+.+++|++....
T Consensus 300 -----------------------------~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-------------- 336 (577)
T 2ymu_A 300 -----------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-------------- 336 (577)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE--------------
T ss_pred -----------------------------ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe--------------
Confidence 1266788999999999999999999999999863211
Q ss_pred cccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEE
Q 001160 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIA 898 (1134)
Q Consensus 820 ~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 898 (1134)
.. .+.+ | ...+.+++|+|+|+++++++ ||.|++||. +++.+..+.+|...|++++|+| ++++|+
T Consensus 337 --------~~--~~~~--~-~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~ 401 (577)
T 2ymu_A 337 --------LQ--TLTG--H-SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIA 401 (577)
T ss_dssp --------EE--EECC--C-SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEE
T ss_pred --------eE--EEeC--C-CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEE
Confidence 11 1222 6 88999999999999999999 899999996 5788889999999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001160 899 IGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
+++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + .+....+|. ..|.
T Consensus 402 ~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~---~~v~ 471 (577)
T 2ymu_A 402 SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVR 471 (577)
T ss_dssp EEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEE
T ss_pred EEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCC---CCEE
Confidence 9999999999995 6788889999999999999999999999999999999999754 3 233344555 5799
Q ss_pred EEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC
Q 001160 979 KVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 979 ~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
+++|+|||++|++ +.|+.|++||.+++.+..+. +|...|++++|+|||++|++++.||.|++||. +++.+..+..
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~ 547 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 547 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe---CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC
Confidence 9999999999999 56899999999888777653 56899999999999999999999999999996 5777777654
Q ss_pred cccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1058 SAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
| ...+.+++|+| ||++|+|++.||+|++||
T Consensus 548 h----------~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 548 H----------SSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp C----------SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred C----------CCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 3 35677999999 789999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-66 Score=627.44 Aligned_cols=573 Identities=13% Similarity=0.147 Sum_probs=458.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.+.+.+++|||||+ +||+++ ++.|+||++.+++.... +.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 467889999999998 567776 67999999987765543 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEEecCCCCCe
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
+|+.|++|+|||+.+++.. ....+.+|.++|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765433 2236778999999999999999 77777754 3677777 577778899999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++|+|++. ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 9999998652 37999999999999999888778889999999999999999999999985 888999999999998
Q ss_pred EEec-------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEccCCCEEEEEeC
Q 001160 581 RTYS-------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 581 ~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
..+. +|.. .|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.
T Consensus 226 ~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEET
T ss_pred eeeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeC
Confidence 8884 5666 899999999999999999999999999999999988875421 112344555 7889999999
Q ss_pred CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccc
Q 001160 653 DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSR 732 (1134)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1134)
|+.+++|+..++ .....+
T Consensus 303 d~~i~~~~~~~~-~~~~~~------------------------------------------------------------- 320 (611)
T 1nr0_A 303 NGFINFVNPELG-SIDQVR------------------------------------------------------------- 320 (611)
T ss_dssp TCCEEEEETTTT-EEEEEE-------------------------------------------------------------
T ss_pred CCcEEEEeCCCC-CcceEE-------------------------------------------------------------
Confidence 999999998655 111111
Q ss_pred ccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCc
Q 001160 733 LVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 733 ~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
.+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus 321 ------------------------------------~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 321 ------------------------------------YGHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp ------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred ------------------------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 12677899999999999999999999999998743
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEE---ecCCCCceEEEE
Q 001160 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTM---FMSPPPAATFLA 888 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~ 888 (1134)
+........+ | ...|.+++|++++. +++++ |+.+++|++.++..... .........+++
T Consensus 356 -------------~~~~~~~~~~--h-~~~v~~~~~s~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 356 -------------GISNRVFPDV--H-ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp -------------CCEEECSSCS--C-SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred -------------CceeeecccC--C-cceEEEEEECCCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 2222211122 7 88999999998875 55555 99999999876532110 001234567899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|+| ++.+++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .
T Consensus 419 ~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~ 488 (611)
T 1nr0_A 419 VSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-I 488 (611)
T ss_dssp ECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-E
T ss_pred EeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-c
Confidence 999 78777766 567899998 445 55555 88899999999999999999999999999998754221 111 3
Q ss_pred CCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCC-cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKL-ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
+|. ..|.+++|+|||++|++ +.|++|++|++.. ..+.......+|...|.+++|||||++||+|+.|++|++||+
T Consensus 489 ~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 489 VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 344 57999999999999999 5789999999932 332222122348999999999999999999999999999999
Q ss_pred CCccee--eecCCcccccccccCC-CCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1047 ETLRFR--CRIGPSAYIPTYAVSN-TAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1047 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
.++... ..+. +| ...+.+++|+| +++ |++|+.||+|++|++.
T Consensus 566 ~~~~~~~~~~~~----------~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 566 NKPSDHPIIIKG----------AHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TCTTSCCEEETT----------SSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred CCcccccchhhc----------cCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 987532 2222 23 35677999999 666 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=614.10 Aligned_cols=565 Identities=15% Similarity=0.170 Sum_probs=454.5
Q ss_pred CcceeEeeCCCCCCcccc------CccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccccccc
Q 001160 314 QSDEVSFAGVAHTPNVYS------QDDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKP 386 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~~------~~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~ 386 (1134)
.+.+++|+|||+.++... |+...++...++. |.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-- 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-- 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE--
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee--
Confidence 445577777776655432 3334455666665 999999999999998 789999999999999976543211
Q ss_pred ceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCccceeeEEecccCCeeEEEEe
Q 001160 387 FKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1134)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1134)
..+.+|.+.|.+++|+|||++||+++.+ +.|++||. ++... .+.+|...|++++|+
T Consensus 97 ---------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 97 ---------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ---------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEEC
T ss_pred ---------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEEC
Confidence 1256799999999999999999998865 47778874 44443 678999999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec----
Q 001160 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---- 538 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---- 538 (1134)
|++.. .|++|+.|++|++||..+++++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99874 69999999999999999999999999999999999998854 899999999999999999888777663
Q ss_pred ---CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC--cceEEEEEeCCCCEEEEEeCCCeEE
Q 001160 539 ---APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--RSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 539 ---~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
.|...|.+++|+|++++|++++. |++|++||+.+++.+.++..+.. .....+.| +++.+++++.|+.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEE
Confidence 68889999999999999999985 88899999999999888865432 13445555 678899999999999
Q ss_pred EEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccc
Q 001160 614 FWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTI 693 (1134)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1134)
+|+...++....+.+| ...|.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 308 ~~~~~~~~~~~~~~gh--~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~---------------------- 362 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF---------------------- 362 (611)
T ss_dssp EEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS----------------------
T ss_pred EEeCCCCCcceEEcCC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec----------------------
Confidence 9999999888777766 4589999999999999999999999999998762 11100
Q ss_pred cccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccccc
Q 001160 694 NALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS 773 (1134)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 773 (1134)
..+|..
T Consensus 363 --------------------------------------------------------------------------~~~h~~ 368 (611)
T 1nr0_A 363 --------------------------------------------------------------------------PDVHAT 368 (611)
T ss_dssp --------------------------------------------------------------------------SCSCSS
T ss_pred --------------------------------------------------------------------------ccCCcc
Confidence 012667
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
.|.+++|++++ .+++++.|+.+++|+......... ...... . .....+++|+|||+
T Consensus 369 ~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~~~~~~-----~-~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 369 MITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------KAVANK-----L-SSQPLGLAVSADGD 424 (611)
T ss_dssp CEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------SCCEEE-----C-SSCEEEEEECTTSS
T ss_pred eEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------ceeeee-----c-CCCCcEEEEeCCCc
Confidence 88999999776 588999999999998753221100 000000 1 34567899999999
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecCcccceEEEE
Q 001160 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKGHQNRITGLA 931 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~h~~~i~~l~ 931 (1134)
.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +.. .+|...|++++
T Consensus 425 ~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~ 498 (611)
T 1nr0_A 425 IAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA 498 (611)
T ss_dssp CEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE
T ss_pred EEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE
Confidence 88888899999999 344 55555 788899999999 999999999999999999987654 334 67999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCC-cccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCC-Cccee
Q 001160 932 FSPTLNALVSSGADAQLCMWSIDK-WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSK-LECSR 1008 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~-~~~~~ 1008 (1134)
|||||++|++++.|++|++|++.+ ++.... ....+|. ..|.+++|+|||++||+ +.|++|++||++ +....
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~ 572 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEEEEECCCccccc
Confidence 999999999999999999999987 442211 0122355 57999999999999999 569999999994 33221
Q ss_pred ccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1009 SWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1009 ~~~~~~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
.....+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 573 -~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 573 -IIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -EEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred -chhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 1123567 78999999999999 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-64 Score=610.29 Aligned_cols=555 Identities=22% Similarity=0.372 Sum_probs=475.9
Q ss_pred cccCCcceeEeeCCCCCCccccCcc------ccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcccc
Q 001160 310 IRTGQSDEVSFAGVAHTPNVYSQDD------LTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERL 382 (1134)
Q Consensus 310 ~~~~~~~~v~~s~~g~~~~~~~~~~------~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~ 382 (1134)
.|.+.|.+++|+|||+.+++...|. .++++++++. |.+.|++++|||||+ +||+|+.|++|+|||.. ++.+
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~ 91 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLL 91 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEE
Confidence 3566899999999999887765443 4677888888 999999999999998 78899999999999964 4444
Q ss_pred ccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEe
Q 001160 383 AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA 462 (1134)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s 462 (1134)
.. +.+|...|.+++|+||+++|++++.|+.+++|+..... .....+|...|.++.|+
T Consensus 92 ~~-------------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~ 148 (577)
T 2ymu_A 92 QT-------------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFS 148 (577)
T ss_dssp EE-------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEEC
T ss_pred EE-------------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeee
Confidence 32 67899999999999999999999999999999987642 23567899999999999
Q ss_pred cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC
Q 001160 463 HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN 542 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 542 (1134)
|++. .+++++.++.+++|+. ..........|...|.+++++|++ .++++++.|+.|++||. +.+....+..|..
T Consensus 149 ~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~ 222 (577)
T 2ymu_A 149 PDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSS 222 (577)
T ss_dssp TTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred cCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecCCC--CEEEEEcCCCEEEEEeC-CCcEEEEEecCCC
Confidence 9999 7899999999999995 455566777899999999998755 89999999999999996 4566778888999
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.|.+++|+|+++++++++. ++.|++||. +++.+..+.+|.. .|.+++|+|+++.+++++.|+.|++||. +++.
T Consensus 223 ~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~ 295 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNR-NGQL 295 (577)
T ss_dssp CEEEEEECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEET-TSCE
T ss_pred CEEEEEECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcE
Confidence 9999999999999999874 788999995 5778888888877 8999999999999999999999999997 4567
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+..+..| ...|.+++|+|++++|++++.|+.|++||.... . ...+
T Consensus 296 ~~~~~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~-~~~~------------------------------- 340 (577)
T 2ymu_A 296 LQTLTGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-H-LQTL------------------------------- 340 (577)
T ss_dssp EEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-E-EEEE-------------------------------
T ss_pred EEEEecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-e-eEEE-------------------------------
Confidence 7777765 458999999999999999999999999997543 1 0000
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEec
Q 001160 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
.+|...+.+++|+|
T Consensus 341 ------------------------------------------------------------------~~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 341 ------------------------------------------------------------------TGHSSSVWGVAFSP 354 (577)
T ss_dssp ------------------------------------------------------------------CCCSSCEEEEEECT
T ss_pred ------------------------------------------------------------------eCCCCCEEEEEECC
Confidence 11567789999999
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG 861 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg 861 (1134)
+|+.+++++.||.+++|+.. +..+.. +.+ | ...|++++|+|||++|++++ |+
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-----------------------~~~~~~-~~~--~-~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-----------------------GQLLQT-LTG--H-SSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-----------------------CCEEEE-EEC--C-SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEEeCCCEEEEEcCC-----------------------CCEEEE-ecC--C-CCCeEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999842 111111 222 7 88999999999999999998 89
Q ss_pred eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEE
Q 001160 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1134)
.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999996 5788889999999999999999 8999999999999999996 57788899999999999999999999999
Q ss_pred EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcceeccCCCCCCCCCe
Q 001160 942 SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLECSRSWSPKDALPAPI 1020 (1134)
Q Consensus 942 ~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~~~h~~~v 1020 (1134)
++.|++|++||.. ++ .+....+|. ..|++++|+|||++|++ +.|+.|++||.+++++..+ .+|.+.|
T Consensus 485 ~~~d~~i~iw~~~-~~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~---~~h~~~v 552 (577)
T 2ymu_A 485 ASDDKTVKLWNRN-GQ-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSV 552 (577)
T ss_dssp EETTSEEEEEETT-SC-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE---ECCSSCE
T ss_pred EeCCCEEEEEcCC-CC-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEE---cCCCCCE
Confidence 9999999999964 44 344455665 57999999999999999 5689999999988777665 4679999
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEe
Q 001160 1021 SSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 1021 ~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
++++|+|||++|++++.|++|++||
T Consensus 553 ~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 553 WGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=661.62 Aligned_cols=613 Identities=13% Similarity=0.168 Sum_probs=504.5
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
.|.+.|++++|||+|+ ++|+|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++|
T Consensus 613 ~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~l 672 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDDSYI 672 (1249)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred cccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCCCEE
Confidence 4999999999999998 789999999999999999887654 67899999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
|+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.++
T Consensus 673 ~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 673 ATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999987665 77899999999999996555489999999999999999999999999999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------------CCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+|+|++ .++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+.
T Consensus 750 ~~sp~~--~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~ 822 (1249)
T 3sfz_A 750 RFSPDD--ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVL 822 (1249)
T ss_dssp EECSST--TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEE
T ss_pred EEecCC--CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEE
Confidence 998855 89999999999999999987765544321 23688999999999999986 56799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+||..++..+..+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..|. ..|.+++|+|+|++++++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~ 900 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTA 900 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEE
Confidence 999999998888874444489999999999999999999999999999999999888664 489999999999999999
Q ss_pred eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCc
Q 001160 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+.||.|++|++.+... ........ ....
T Consensus 901 s~dg~v~vw~~~~~~~-~~~~~~~~---------------------------------------------------~~~~ 928 (1249)
T 3sfz_A 901 SDDQTIRVWETKKVCK-NSAIVLKQ---------------------------------------------------EIDV 928 (1249)
T ss_dssp ETTSCEEEEEHHHHHS-CCSSSEEE---------------------------------------------------EEEE
T ss_pred eCCCeEEEEEccccce-eeeecccc---------------------------------------------------eeeE
Confidence 9999999999765411 10000000 0000
Q ss_pred cccccccccc-ccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCC
Q 001160 731 SRLVDVKPRV-AEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 731 ~~~~~~~~~~-~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.+.++...++ ....+.+.+++..... ... .+...+.+++++|+++++++++.+|.|++|++..
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~------ 992 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQ----IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN------ 992 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCC----EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT------
T ss_pred EEcCCCcEEEEecCCcceEEEecCcce----EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC------
Confidence 1111122222 2223455555544311 111 1346799999999999999999999999998643
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEE
Q 001160 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1134)
+..... +.+ | ...|++++|+|||+++++++ ||.|++||+.+++.. .+..|...|.+++
T Consensus 993 ----------------~~~~~~-~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~ 1051 (1249)
T 3sfz_A 993 ----------------NRVFSS-GVG--H-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFR 1051 (1249)
T ss_dssp ----------------TSCEEE-CCC--C-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEE
T ss_pred ----------------Cceeee-ccc--C-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEE
Confidence 222211 223 7 89999999999999999998 999999999998876 4567999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. +....
T Consensus 1052 ~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~ 1124 (1249)
T 3sfz_A 1052 LLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELK 1124 (1249)
T ss_dssp ECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCC
T ss_pred EcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeec
Confidence 999 65 467799999999999999999999999999999999999999999999999999999998774 34455
Q ss_pred CCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC-CCcceeccC------CCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001160 969 GRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWS------PKDALPAPISSAIYSCDGLLVYAGFCDGA 1040 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~~~~~~------~~~~h~~~v~~v~~s~dg~~l~~~~~dg~ 1040 (1134)
+|. ..|.+++|+|||++|+++ .|+.|++||+ +++.+..+. ...+|.+.|++++|||||++|++++ |.
T Consensus 1125 ~h~---~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A 1125 GHN---GCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp CCS---SCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred cCC---CcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence 565 579999999999999995 6899999999 555554431 1245789999999999999999885 89
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
|++||+.+++.+..+..+ ...+.+++|+| |+.+|++++.||.|++|++.
T Consensus 1200 v~vwd~~~g~~~~~~~~~----------~~~i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFYTN----------GTNLKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEBCSSSCBCCCCCCCS----------SCCCCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred EEEEECCCCceeeeeecc----------CCcccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 999999999988776543 23445788999 78999999999999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-59 Score=571.20 Aligned_cols=556 Identities=10% Similarity=0.177 Sum_probs=472.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc----cccccccceeeccccccccccccccccCCcC-eEEEEEcC-
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR----ERLAHKPFKVWDISAASMPLQNALLNDAAIS-VNRCVWGP- 418 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~i~~sp- 418 (1134)
|.+.|++++|||+|+ +|++++ ++.|.|||+.++ +.... +.+|... |.+++|+|
T Consensus 17 ~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECSS
T ss_pred ccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECcC
Confidence 678999999999998 566776 889999999987 44432 6789999 99999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC-----ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCe
Q 001160 419 -DGLMLGVAFSKHIVHLYTYNPTG-----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGR 488 (1134)
Q Consensus 419 -dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~ 488 (1134)
++++||+|+.||.|++||+.++. .......+.+|..+|.+++|+|+++ +|++++.+ +.|++|| +++
T Consensus 76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCC
T ss_pred CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCC
Confidence 99999999999999999997551 1123346778999999999999999 78888877 6888888 677
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCC-CCEEEEEeeCCC
Q 001160 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSAD-GTRLFSCGTSKE 564 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~~~~ 564 (1134)
.+..+.+|...|.+++|+|++. ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999988652 3899999999999999999888888888888 9999999999 999999875
Q ss_pred CCCcEEEEeCCCCeeEEEe-c---CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC--CCCcceE
Q 001160 565 GESHLVEWNESEGAIKRTY-S---GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG--LPASPRL 638 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~ 638 (1134)
++.|++||+.+++.+..+ . .|.. .|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 788999999999999998 5 6665 89999999 999999999999999999999999998886531 2356677
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCC
Q 001160 639 RFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPP 718 (1134)
Q Consensus 639 ~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1134)
.|+ ++.++++++.||.|++||+.++ +....+.+|...+..
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------------------- 344 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------------------- 344 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE--------------------------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE--------------------------------------
Confidence 775 8999999999999999999887 555666666543321
Q ss_pred CcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEE
Q 001160 719 AVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKL 798 (1134)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~v 798 (1134)
..+ ++ .++++.|+.|++|++. .+. ..|...|.+++| +++..+++++.|+.+++
T Consensus 345 -----------~~~-~~--l~~~~~dg~i~~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 345 -----------LTV-NP--LISGSYDGRIMEWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp -----------EET-TT--TEEEETTSCEEETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred -----------EEe-cC--cEEECCCCeEEEEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 223 33 5666678999999987 112 348899999999 77888999999999999
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEec
Q 001160 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~ 878 (1134)
|++...+. ...+.+++++|++.+++++.++.+.+|++.+++.+..+.
T Consensus 398 ~~~~~~~~---------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 398 NGITKHEF---------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TTEEEEEC---------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcccCcc---------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 98753221 235788999999999999889999999999999988887
Q ss_pred CCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEEcCCceEE-EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001160 879 SPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVK-TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 879 ~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~-~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
|...+++++|+ +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+||+++|++++.|+.|++||+.++
T Consensus 445 -~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 520 (615)
T 1pgu_A 445 -LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 520 (615)
T ss_dssp -CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred -cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC
Confidence 88899999998 679999999 999999999988766 678899999999999999999999999999999999998
Q ss_pred ccccceeeecCCC-CCCCCcCceEEEECC----------CCcEEEEE-ECCeEEEEeC-CC-cceeccCCCCCCCCCeEE
Q 001160 957 EKLKSRFIQAPAG-RQSPLVGETKVQFHN----------DQTHLLVV-HESQISVYDS-KL-ECSRSWSPKDALPAPISS 1022 (1134)
Q Consensus 957 ~~~~~~~~~~~~~-~~~~~~~v~~~~fsp----------dg~~l~~~-~d~~v~vwd~-~~-~~~~~~~~~~~h~~~v~~ 1022 (1134)
+. +....+ |. ..|++++|+| ++++|+++ .|+.|++||+ ++ ..+..+ .+|...|++
T Consensus 521 ~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~ 589 (615)
T 1pgu_A 521 EV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL---NAHKDGVNN 589 (615)
T ss_dssp EE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET---TSSTTCEEE
T ss_pred cc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh---hcCccceEE
Confidence 74 344444 54 5799999999 99999995 6899999999 44 444443 567899999
Q ss_pred EEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 1023 AIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1023 v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
++|+||++ |++++.||.|++|++.+
T Consensus 590 l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 590 LLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999 99999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-59 Score=616.99 Aligned_cols=573 Identities=16% Similarity=0.216 Sum_probs=476.8
Q ss_pred hcccCCcceeEeeCCCCCCccccCc-------cccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc
Q 001160 309 RIRTGQSDEVSFAGVAHTPNVYSQD-------DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE 380 (1134)
Q Consensus 309 ~~~~~~~~~v~~s~~g~~~~~~~~~-------~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~ 380 (1134)
..+.+.|.+++|+|+|+.+++...| ..+++.+.++. |.+.|++++|+|+|+ ++++|+.||.|+|||+.+++
T Consensus 612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCc
Confidence 3456789999999999887766544 35777888887 999999999999998 78899999999999999988
Q ss_pred ccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeE
Q 001160 381 RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND 458 (1134)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 458 (1134)
.+.. +.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|++
T Consensus 691 ~~~~-------------------~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~ 748 (1249)
T 3sfz_A 691 LVHT-------------------YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNH 748 (1249)
T ss_dssp EEEE-------------------EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEE
T ss_pred eEEE-------------------EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEE
Confidence 7654 568999999999999 56689999999999999999987655 77799999999
Q ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC-------------CCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-------------HEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 459 l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-------------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
++|+|+++ ++++|+.|+.|++||+.+++....+.. +...+.+++|+|++ ..+++++ ++.+.+
T Consensus 749 ~~~sp~~~--~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~-~~~v~~ 823 (1249)
T 3sfz_A 749 CRFSPDDE--LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG--DKIIVAA-KNKVLL 823 (1249)
T ss_dssp EEECSSTT--EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS--SEEEEEE-TTEEEE
T ss_pred EEEecCCC--EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC--CEEEEEc-CCcEEE
Confidence 99999999 899999999999999999987766542 23468888897754 7888776 789999
Q ss_pred EEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001160 526 WLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 526 wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
||+.+......+. .+...+.+++|+|+++++++++. ++.|++||+.++..+..+.+|.. .|.+++|+|++++++
T Consensus 824 ~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 824 FDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFL 898 (1249)
T ss_dssp EETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred EEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCceeeecCCCcc-ceEEEEECCCCCEEE
Confidence 9999988877665 77889999999999999999874 78899999999999999999887 899999999999999
Q ss_pred EEeCCCeEEEEECCCCee-----------------------------EEEEeCC------CCCCCcceEEEccCCCEEEE
Q 001160 605 AAGDEFQIKFWDMDNMNM-----------------------------LTTVDAD------GGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~------~~~~~v~~~~~s~d~~~l~~ 649 (1134)
+++.||.|++|++.+... ....... .....+.+++|+|+++++++
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 999999999999753210 0000000 01235778888888888888
Q ss_pred EeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCC
Q 001160 650 TTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTID 729 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1134)
|+.+|.|++|++.++ .....+
T Consensus 979 g~~~g~i~i~d~~~~-~~~~~~---------------------------------------------------------- 999 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNN-RVFSSG---------------------------------------------------------- 999 (1249)
T ss_dssp EETTSCCEEEETTTT-SCEEEC----------------------------------------------------------
T ss_pred EcCCCCEEEEEcCCC-ceeeec----------------------------------------------------------
Confidence 888888888887665 111111
Q ss_pred cccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCC
Q 001160 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPS 809 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 809 (1134)
.+|...|.+++|+|+|+++++++.||.|++|++..
T Consensus 1000 ---------------------------------------~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~------ 1034 (1249)
T 3sfz_A 1000 ---------------------------------------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT------ 1034 (1249)
T ss_dssp ---------------------------------------CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT------
T ss_pred ---------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC------
Confidence 12667889999999999999999999999998743
Q ss_pred CCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEE
Q 001160 810 GKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1134)
Q Consensus 810 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1134)
+.... ... | ...+.+++|+|++.+++.+.||.|++||+.+++....+.+|...|++++|
T Consensus 1035 ----------------~~~~~--~~~--~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~ 1093 (1249)
T 3sfz_A 1035 ----------------GDYVF--LQA--H-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093 (1249)
T ss_dssp ----------------TEEEC--CBC--C-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEE
T ss_pred ----------------CceEE--Eec--C-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEE
Confidence 22221 122 6 88999999999887655555999999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCccccccee----ee
Q 001160 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF----IQ 965 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~----~~ 965 (1134)
+| ++++|++++.||+|++||+.+++++..+.+|.+.|++++|+||+++|++++.||+|++||+.+++...... ..
T Consensus 1094 s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1172 (1249)
T 3sfz_A 1094 SS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE 1172 (1249)
T ss_dssp CS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---
T ss_pred CC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc
Confidence 99 89999999999999999999999999999999999999999999999999999999999999988544321 01
Q ss_pred cCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001160 966 APAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 966 ~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vw 1044 (1134)
...+|. ..|++++|+|||++|++++ +.|++||+ ++..+..+ .+|...|++++|+|||++|++++.||.|++|
T Consensus 1173 ~~~~~~---~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~---~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1173 GTATHG---GWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTF---YTNGTNLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp ----CC---SCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCC---CCSSCCCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred cccccC---ceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeee---eccCCcccEEEECCCCCEEEEecCCcEEEEE
Confidence 112333 5799999999999999875 89999999 66665544 4458899999999999999999999999999
Q ss_pred eCC
Q 001160 1045 DAE 1047 (1134)
Q Consensus 1045 d~~ 1047 (1134)
++.
T Consensus 1246 ~l~ 1248 (1249)
T 3sfz_A 1246 QVL 1248 (1249)
T ss_dssp CCC
T ss_pred eec
Confidence 975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-57 Score=566.35 Aligned_cols=603 Identities=10% Similarity=0.057 Sum_probs=438.7
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC
Q 001160 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
...+.|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34456899999999999998 78999999999999988765443 124788999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee---------
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ--------- 490 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~--------- 490 (1134)
|++|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||.|++||+.+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987665 443 678999999999999 8999999999999999988764
Q ss_pred --EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------------------CCcEEEEEEC
Q 001160 491 --YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------------------GNWCTMMAYS 550 (1134)
Q Consensus 491 --~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1134)
..+.+|.++|.+++|+|.. +..+++|+.|+.| +||+++.+....+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 2346799999999999853 3689999999999 9999988877766654 4679999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE--ec---Cc------------cCcceEEEEEe----CCC-CEEEEEeC
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRT--YS---GF------------RKRSLGVVQFD----TTR-NRFLAAGD 608 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~------------~~~~v~~~~~~----~~~-~~l~~~~~ 608 (1134)
|+|++|++++. |+.|++||+++++++.. +. .| +...|.+++|+ |++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999985 78899999999987754 21 22 12369999996 443 45666766
Q ss_pred C-----CeEEEEECC------------------CCeeEEEEeCCCCCCCcceEEEcc----------CCCEEEEEeCCCc
Q 001160 609 E-----FQIKFWDMD------------------NMNMLTTVDADGGLPASPRLRFNK----------EGSLLAVTTSDNG 655 (1134)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~~~~~dg~ 655 (1134)
+ ..+.+|++. +.+....+... +...|..+.+.+ ++..+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22334444321 123677777755 3457889999999
Q ss_pred EEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccc
Q 001160 656 IKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD 735 (1134)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1134)
|++|++.++.........+... . +. .+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l----------------~--~~----------------------------------~~~ 403 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNL----------------S--WL----------------------------------RPL 403 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGG----------------T--TB----------------------------------TTB
T ss_pred EEEEECCCCCcccccccCCCcc----------------c--cc----------------------------------CCC
Confidence 9999997662222111111000 0 00 000
Q ss_pred cccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccc
Q 001160 736 VKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1134)
Q Consensus 736 ~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 815 (1134)
... ++..+...++|+.......... ..+ .+|...+.+++|+|+++.|++++.|++|++||+........
T Consensus 404 v~~-~~~s~~~~~~w~~~~~~~~~~~--~~l--~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~------ 472 (902)
T 2oaj_A 404 ATT-SMAASVPNKLWLGALSAAQNKD--YLL--KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN------ 472 (902)
T ss_dssp EEE-EEEEEEEHHHHHHHHHTTBCCC--CSC--CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT------
T ss_pred eeE-EEEEEcCHHHHHHHHhcccCCC--Ccc--cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC------
Confidence 000 0001122334543211000000 112 34777788899999999999999999999999865421000
Q ss_pred cCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCC-----------------------
Q 001160 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTF----------------------- 871 (1134)
Q Consensus 816 ~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~----------------------- 871 (1134)
.++... +.. ..+..| ...|.+++|+|||++||+|+ ||+|+|||+.++
T Consensus 473 ---~~~~~~----l~~-~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (902)
T 2oaj_A 473 ---ASFEVN----LSR-TLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSL 543 (902)
T ss_dssp ---BCEEEE----HHH-HTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCG
T ss_pred ---ceEEee----chh-hcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccc
Confidence 000000 000 001137 88999999999999999999 999999999865
Q ss_pred ----------------------eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-----Eec-Cc
Q 001160 872 ----------------------KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-----KLK-GH 923 (1134)
Q Consensus 872 ----------------------~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-----~l~-~h 923 (1134)
+++..+.+|.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 544 NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred cCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 34778889999999999999 88 99999999999999998887654 233 89
Q ss_pred ccceEEEEEe-----cCC---CEEEEEcCCCcEEEEeC---CCcccccceeeecCCCCCCCCcCceEEE-EC--------
Q 001160 924 QNRITGLAFS-----PTL---NALVSSGADAQLCMWSI---DKWEKLKSRFIQAPAGRQSPLVGETKVQ-FH-------- 983 (1134)
Q Consensus 924 ~~~i~~l~~s-----~d~---~~l~s~~~D~~i~iWd~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-fs-------- 983 (1134)
.+.|++|+|+ ||| ++|++++.|++|++||+ .+|+......-.....+. ..|..++ |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~~~ 698 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSK---GPIHKIDAFSKETKSSCL 698 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSS---CCCCEEEEEETTTCCBCB
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCC---CceEEEEeEecCCCCccc
Confidence 9999999999 886 89999999999999999 676643221111111111 3455555 55
Q ss_pred --------------CCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEE---E------EccCCCEEEEEecCC
Q 001160 984 --------------NDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSA---I------YSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 984 --------------pdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v---~------~s~dg~~l~~~~~dg 1039 (1134)
++|..|++ ++..|+||++ ++++..... .|...+.++ . |++++..|++++.||
T Consensus 699 a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k~~~k~~---~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g 774 (902)
T 2oaj_A 699 ATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSKSTHKGF---KYPLAATGLSYISTVEKNNDRKNLTVIITLEING 774 (902)
T ss_dssp CBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCCEEEEEC---SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS
T ss_pred CCHHHHhccCCCCCCCeEEEEE-eccceEEEeCccccceeeEc---ccceeeeEEEEEEeccccccccCceEEEEEeCCC
Confidence 55555554 4889999999 667665542 234556665 5 789999999999999
Q ss_pred cEEEEeCCCcceeeecCCc
Q 001160 1040 AIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~ 1058 (1134)
.|++|++.+++.+.++...
T Consensus 775 ~i~~~s~p~l~~~~~~~~~ 793 (902)
T 2oaj_A 775 HLRVFTIPDFKEQMSEHIP 793 (902)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred cEEEEECcchHHHhhccCC
Confidence 9999999999999888754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=545.97 Aligned_cols=557 Identities=10% Similarity=0.090 Sum_probs=457.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CccceeeEEecccCC-eeEEEEec--CCCcEEEEEEcCCC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT----GELRQHLEIDAHVGG-VNDIAFAH--PNKQLCIVTCGDDK 477 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~l~~s~--d~~~~~l~sg~~d~ 477 (1134)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++|+.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 46889999999999999999998 889999999987 4444 78899999 99999999 999 899999999
Q ss_pred cEEEEECCCC--------eeeEEecCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeEecCCCCcEE
Q 001160 478 MIKVWDVVAG--------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 478 ~i~iwd~~~~--------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.+ +.|++|| ..+....+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC--CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999755 6777888999999999998765 899999988 6888887 5667778888999999
Q ss_pred EEEECCCCC-EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc--ceEEEEEeCC-CCEEEEEeCCCeEEEEECCCCe
Q 001160 546 MMAYSADGT-RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 546 ~~~~s~~~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .|.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 6777764 788999999999999999887542 6999999999 9999999999999999999999
Q ss_pred eEEEE-e---CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccC
Q 001160 622 MLTTV-D---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALG 697 (1134)
Q Consensus 622 ~~~~~-~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1134)
.+..+ . .+ ...|.+++|+ ++.+|++++.|+.|++||+.++ +....+..+......
T Consensus 241 ~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~----------------- 299 (615)
T 1pgu_A 241 FLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGN----------------- 299 (615)
T ss_dssp EEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGG-----------------
T ss_pred EeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccC-----------------
Confidence 98888 3 44 4589999999 9999999999999999999887 444444433110000
Q ss_pred CCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccc-ccccccCccceeccCCCCCccceeEeecCCcccccceE
Q 001160 698 PASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP-RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
......+ +++.. ++++.++.|++|++..... .. .+ .+|...|.
T Consensus 300 ----------------------------~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~---~~--~~--~~~~~~v~ 343 (615)
T 1pgu_A 300 ----------------------------QQVGVVA-TGNGRIISLSLDGTLNFYELGHDEV---LK--TI--SGHNKGIT 343 (615)
T ss_dssp ----------------------------CEEEEEE-EETTEEEEEETTSCEEEEETTEEEE---EE--EE--CCCSSCEE
T ss_pred ----------------------------ceeEEEe-CCCCeEEEEECCCCEEEEECCCCcE---EE--EE--eCCCCCEE
Confidence 0001112 24444 4445579999999885221 11 22 24889999
Q ss_pred EEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
+++| |+ +++++.||.|++|++. .+ . ..| ...|.+++| +++..++
T Consensus 344 ~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~----~-~~~-~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 344 ALTV-NP---LISGSYDGRIMEWSSS-------------------------SM----H-QDH-SNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp EEET-TT---TEEEETTSCEEETTTT-------------------------EE----E-CCC-CSCEEEEEC-CSTTCCE
T ss_pred EEEe-cC---cEEECCCCeEEEEEch-------------------------hh----c-Ccc-cCceEEEEE-CCCcEEE
Confidence 9999 88 9999999999999753 11 1 227 899999999 6677888
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1134)
+++ |+.|++||+.+++.. ..+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 455 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFG-------SQPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS-- 455 (615)
T ss_dssp EEETTTEEEETTEEEEECS-------SCEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--
T ss_pred EEeCCCCEEEEEcccCccc-------CCceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--
Confidence 887 999999998765432 2788999999 88888877 88999999999999888887 88999999999
Q ss_pred CCEEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeC-CCcceeccCC
Q 001160 936 LNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDS-KLECSRSWSP 1012 (1134)
Q Consensus 936 ~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~-~~~~~~~~~~ 1012 (1134)
+++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|+++ .|+.|++||+ +++.+..+..
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 528 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec
Confidence 889999999 9999999999865321 3444554 579999999999999995 6899999999 6665554322
Q ss_pred CCCCCCCeEEEEEcc----------CCCEEEEEecCCcEEEEeCCCc-ceeeecCCcccccccccCCCCccEEEeecCCC
Q 001160 1013 KDALPAPISSAIYSC----------DGLLVYAGFCDGAIGVFDAETL-RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1013 ~~~h~~~v~~v~~s~----------dg~~l~~~~~dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
.|...|++++|+| |+++|++++.||.|++||+.++ +.+..+..| ...+.+++|+| +
T Consensus 529 --~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h----------~~~v~~l~~s~-~ 595 (615)
T 1pgu_A 529 --FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH----------KDGVNNLLWET-P 595 (615)
T ss_dssp --CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS----------TTCEEEEEEEE-T
T ss_pred --CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC----------ccceEEEEEcC-C
Confidence 2689999999999 9999999999999999999998 667666533 35677899999 6
Q ss_pred CCEEEEEeCCCcEEEEecCC
Q 001160 1082 PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1082 ~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
++ |++++.||+|++|++..
T Consensus 596 ~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTSCEEEEEEC-
T ss_pred CC-eEEecCCceEEEEeeec
Confidence 77 99999999999999874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-55 Score=546.25 Aligned_cols=585 Identities=11% Similarity=0.096 Sum_probs=427.5
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
..+|.+.|++++|+|++++||+|+.||.|++|+..+.+... . ..|..+|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~---~-~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI---K-LEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE---E-CSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE---E-cCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 34799999999999999999999999999999988764332 2 35788999999999 77 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce-----------eEecCCCCcEEEEEECCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-----------VDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~ 552 (1134)
+.+++++..+. |.+.|++++|+|++ .+|++|+.||+|++||+++.... ..+..|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCC--CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 77899999998865 89999999999999999876643 223567789999999996
Q ss_pred C-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc-----------------cCcceEEEEEeCCCCEEEEEeCCCeEEE
Q 001160 553 G-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-----------------RKRSLGVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 553 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
+ ..+++++ .++.| +||+++++.+..+..+ +...|.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~----~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISY----EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEEC----SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEe----CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 5677765 37889 9999999999888766 1237999999999999999999999999
Q ss_pred EECCCCeeEEEEeC-----CC-----------CCCCcceEEEc----cCC-CEEEEEeCC-----CcEEEEECCCchhhh
Q 001160 615 WDMDNMNMLTTVDA-----DG-----------GLPASPRLRFN----KEG-SLLAVTTSD-----NGIKILANSDGVRLL 668 (1134)
Q Consensus 615 wd~~~~~~~~~~~~-----~~-----------~~~~v~~~~~s----~d~-~~l~~~~~d-----g~i~iw~~~~~~~~~ 668 (1134)
||+.+++++..... +. +...|.+++|+ |++ .+|++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 99999988764221 21 23368999995 443 567777665 3788887421100 0
Q ss_pred hhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccc
Q 001160 669 RMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748 (1134)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 748 (1134)
..++.+....
T Consensus 317 ----------------------------------------------------------------------~~~s~~~~~~ 326 (902)
T 2oaj_A 317 ----------------------------------------------------------------------SITSYEGMKN 326 (902)
T ss_dssp ----------------------------------------------------------------------GGCCHHHHHH
T ss_pred ----------------------------------------------------------------------cccchhhhhh
Confidence 0000011111
Q ss_pred eeccCCCCCccceeEeecCCcccccceEEEEEec----------CCcceEEeeccCeeEEeecccccCCCC---------
Q 001160 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN----------SGLSLLALASNAVHKLWKWQRTERNPS--------- 809 (1134)
Q Consensus 749 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~g~~l~~~~~dg~v~vw~~~~~~~~~~--------- 809 (1134)
+|+.. ...+.+.+ .+...|.++.+.+ +...+++++.||.+++|++..+.....
T Consensus 327 ~~~~~-----~~~~~~~~---~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 327 YYANP-----KQMKIFPL---PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp HHHSC-----SEEEEECC---SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred hhcCc-----cceEEEec---CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 11100 00011110 1345667777655 334688888999999999854321100
Q ss_pred CC--cc-----cccCcccccCC---CCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEE----
Q 001160 810 GK--AT-----ANVAPQLWQPP---SGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM---- 874 (1134)
Q Consensus 810 ~~--~~-----~~~~~~~w~~~---~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~---- 874 (1134)
+. .+ ......+|+.. .+.. ...+.+ | ...+.+++|+||+++||+|+ |++|++||+.++...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~~l~G--~-~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNK-DYLLKG--G-VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CCSCCC--S-BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCC-CCcccC--C-cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCce
Confidence 00 00 00011233311 0111 112444 6 77888899999999999999 999999999876421
Q ss_pred E--Eec-----CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---------------------------------
Q 001160 875 T--MFM-----SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--------------------------------- 914 (1134)
Q Consensus 875 ~--~~~-----~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~--------------------------------- 914 (1134)
. .+. +|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDV 553 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEEC
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccc
Confidence 1 122 7889999999999 9999999999999999999876
Q ss_pred ------------eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCC-CCCCCCcCceEEE
Q 001160 915 ------------EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA-GRQSPLVGETKVQ 981 (1134)
Q Consensus 915 ------------~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 981 (1134)
+++..+.+|.+.|++|+||||| +||+|+.|++|++||++++..+....+.... +|. ..|++++
T Consensus 554 ~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~ 629 (902)
T 2oaj_A 554 RDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIE 629 (902)
T ss_dssp GGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEE
T ss_pred cccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEE
Confidence 3467889999999999999999 9999999999999999886643211112332 565 5799999
Q ss_pred EC-----CCC---cEEEE-EECCeEEEEeC----CCcceeccCCCC--CCCCCeEEEE-Ec-------------------
Q 001160 982 FH-----NDQ---THLLV-VHESQISVYDS----KLECSRSWSPKD--ALPAPISSAI-YS------------------- 1026 (1134)
Q Consensus 982 fs-----pdg---~~l~~-~~d~~v~vwd~----~~~~~~~~~~~~--~h~~~v~~v~-~s------------------- 1026 (1134)
|+ ||| ++|++ +.|++|++||+ ++++...+..+. .|.++|.+++ |+
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~ 709 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSK 709 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGG
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCC
Confidence 99 886 78888 57899999998 555555443321 2357888777 76
Q ss_pred ---cCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEE---e------ecCCCCCEEEEEeCCCcE
Q 001160 1027 ---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVI---A------PHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1027 ---~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~d~~~l~s~~~Dg~v 1094 (1134)
+++.+|+++ +..|+||++.+++.++....+ .....++ . |++ ++..|++++.||+|
T Consensus 710 ~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~----------~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i 776 (902)
T 2oaj_A 710 GLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKY----------PLAATGLSYISTVEKNNDRK-NLTVIITLEINGHL 776 (902)
T ss_dssp TCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSS----------CEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEE
T ss_pred CCCCCeEEEEEe--ccceEEEeCccccceeeEccc----------ceeeeEEEEEEecccccccc-CceEEEEEeCCCcE
Confidence 455555554 789999999999888766432 1222233 3 566 67899999999999
Q ss_pred EEEecCCCcc
Q 001160 1095 HVVEPSDAEL 1104 (1134)
Q Consensus 1095 ~vW~~~~~~~ 1104 (1134)
++|++.+.+.
T Consensus 777 ~~~s~p~l~~ 786 (902)
T 2oaj_A 777 RVFTIPDFKE 786 (902)
T ss_dssp EEEETTTCCE
T ss_pred EEEECcchHH
Confidence 9999998883
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=487.14 Aligned_cols=479 Identities=15% Similarity=0.237 Sum_probs=384.6
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
..+.+. |.+.|++++|||+|+ ++|+|+.||.|+|||+.+++.+.. +.+|.+.|.+++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s 64 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFI 64 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEe
Confidence 345555 899999999999998 788899999999999999876653 56799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h 496 (1134)
|++++||+|+.||.|++||+.+++.+. .+.+|...|++++|+|+++ +|++++.|+.|++||+.++ .....+.+|
T Consensus 65 ~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 139 (814)
T 3mkq_A 65 ARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGH 139 (814)
T ss_dssp GGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCC
Confidence 999999999999999999999987655 7788999999999999999 8999999999999999987 677888999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECC--CCCEEEEEeeCCCCCCcEEEEe
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSA--DGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
...|.+++|+|. ++..+++++.||+|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||
T Consensus 140 ~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d 214 (814)
T 3mkq_A 140 EHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWD 214 (814)
T ss_dssp SSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEE
T ss_pred CCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEE
Confidence 999999999883 23799999999999999998888777766555 7899999999 9999999874 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEEe
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~ 651 (1134)
..+++.+..+.+|.. .|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. +++++
T Consensus 215 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~- 290 (814)
T 3mkq_A 215 YQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG- 290 (814)
T ss_dssp TTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEE-
T ss_pred CCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEE-
Confidence 999999999998877 89999999999999999999999999999999999887664 4799999999987 45544
Q ss_pred CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcc
Q 001160 652 SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGS 731 (1134)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1134)
.++.+.+|++..+.
T Consensus 291 ~~~~~~~~~~~~~~------------------------------------------------------------------ 304 (814)
T 3mkq_A 291 FDNGFTVLSLGNDE------------------------------------------------------------------ 304 (814)
T ss_dssp ETTEEEEEECSCCS------------------------------------------------------------------
T ss_pred eCCCEEEEEcCCCC------------------------------------------------------------------
Confidence 56678888865431
Q ss_pred cccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCee-EEeecccccCCCCC
Q 001160 732 RLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH-KLWKWQRTERNPSG 810 (1134)
Q Consensus 732 ~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v-~vw~~~~~~~~~~~ 810 (1134)
..+.++|+|+.+++++.+... .++...
T Consensus 305 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 332 (814)
T 3mkq_A 305 --------------------------------------------PTLSLDPVGKLVWSGGKNAAASDIFTAV-------- 332 (814)
T ss_dssp --------------------------------------------CCEEECSSSEEEEECCTTSCTTCEEEEE--------
T ss_pred --------------------------------------------ceeEECCCCCEEEECcccccceeeeeee--------
Confidence 123345555555544433210 000000
Q ss_pred CcccccCcccccCCCCCccccccC-CCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEE
Q 001160 811 KATANVAPQLWQPPSGTLMTNDIN-ESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF 889 (1134)
Q Consensus 811 ~~~~~~~~~~w~~~~~~~~~~~~~-~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 889 (1134)
....|+...+........ ...| ...+.+++|+|||++++++++|.+.+|++....... .+.+.+++|
T Consensus 333 ------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~ 400 (814)
T 3mkq_A 333 ------IRGNEEVEQDEPLSLQTKELGSV-DVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVW 400 (814)
T ss_dssp ------CCSCCCCCSSSCBCCCCEEECCC-SSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEE
T ss_pred ------cccccccccCccceeeeecCCCC-ccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEE
Confidence 001122222222211110 0114 677899999999999999999999999987654432 457889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC---CEEEEEcCCCcEEEEeCCCcccccceeeec
Q 001160 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL---NALVSSGADAQLCMWSIDKWEKLKSRFIQA 966 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~---~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~ 966 (1134)
+| +++++|+++.+|.|++|+ .+.+|...+.+++|+||+ .+|++++.|++|++||+.+++. +..
T Consensus 401 sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~-----~~~ 466 (814)
T 3mkq_A 401 GP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL-----VRR 466 (814)
T ss_dssp CT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE-----EEE
T ss_pred eC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE-----EEE
Confidence 99 899999999999999995 345688889999999998 6889999999999999998873 333
Q ss_pred CCCCCCCCcCceEEEECCCCcEEEEE------ECCeEEEEe
Q 001160 967 PAGRQSPLVGETKVQFHNDQTHLLVV------HESQISVYD 1001 (1134)
Q Consensus 967 ~~~~~~~~~~v~~~~fspdg~~l~~~------~d~~v~vwd 1001 (1134)
...+. ..++|+|||++|+++ .+..+.+|.
T Consensus 467 ~~~~~------~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 467 IDVNA------KDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp ESSCE------EEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EecCC------CEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 33332 389999999999997 556666553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=464.88 Aligned_cols=464 Identities=16% Similarity=0.194 Sum_probs=382.4
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+|+|++||+|+.||.|++||+.+++.+. .+.+|..+|.+++|+|+++ +|++|+.|+.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999987655 7778999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+.+. .....+..|...|.+++|+| +++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCC--CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998865 89999999999999999987 45567788999999999999 8889998874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
++.|++||+.++.....+..+....+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~ 235 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAV 235 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEE
Confidence 788999999999888888877755899999999 99999999999999999999999999988764 4799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCC
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPA 719 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1134)
|+|+++++++++.||.|++||..++ +....+.
T Consensus 236 ~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~----------------------------------------------- 267 (814)
T 3mkq_A 236 FHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN----------------------------------------------- 267 (814)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------------------------------------------
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-----------------------------------------------
Confidence 9999999999999999999998766 2111111
Q ss_pred cccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcce-EEeeccCeeEE
Q 001160 720 VSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSL-LALASNAVHKL 798 (1134)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~v 798 (1134)
.+...+.+++|+|+|..+ ++.+.++.+.+
T Consensus 268 --------------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 268 --------------------------------------------------VGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp --------------------------------------------------CSSSSEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred --------------------------------------------------cCCCcEEEEEEccCCCceEEEEEeCCCEEE
Confidence 144678999999999764 77777888888
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC---eEEE------EEC
Q 001160 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG---KVSL------FNM 868 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg---~i~v------wd~ 868 (1134)
|++. .....++++|+|+.+++++ +. .+.. |++
T Consensus 298 ~~~~--------------------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (814)
T 3mkq_A 298 LSLG--------------------------------------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV 339 (814)
T ss_dssp EECS--------------------------------------CCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred EEcC--------------------------------------CCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence 8742 2234578899999999876 32 1222 233
Q ss_pred CCCeE----EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcC
Q 001160 869 MTFKV----MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944 (1134)
Q Consensus 869 ~~~~~----~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~ 944 (1134)
..+.. ...+..+...+.+++|+| ++++|++++ ||.+.+|++...... +.+.+.+++|+||++++++++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~ 412 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDE 412 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECT
T ss_pred ccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeC
Confidence 33222 234455677899999999 999999988 899999998755432 3467889999999999999999
Q ss_pred CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC---cEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCC
Q 001160 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ---THLLV-VHESQISVYDS-KLECSRSWSPKDALPAP 1019 (1134)
Q Consensus 945 D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg---~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~ 1019 (1134)
|++|++|+.-.+ +. ..+..++|+||| ++|++ +.++.|++||+ +++.+..+...
T Consensus 413 ~g~v~l~~~~~~-------------~~---~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------ 470 (814)
T 3mkq_A 413 TGQIKYYKNFKE-------------VT---SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN------ 470 (814)
T ss_dssp TCCEEEEETTEE-------------CT---TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC------
T ss_pred CCcEEEEECCCC-------------cc---ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC------
Confidence 999999964321 11 346788999998 45555 78999999999 66666665432
Q ss_pred eEEEEEccCCCEEEEE------ecCCcEEEEe
Q 001160 1020 ISSAIYSCDGLLVYAG------FCDGAIGVFD 1045 (1134)
Q Consensus 1020 v~~v~~s~dg~~l~~~------~~dg~I~vwd 1045 (1134)
...++|||||++|+++ +.++.+.+|.
T Consensus 471 ~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 471 AKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred CCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 2399999999999999 6665555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=412.84 Aligned_cols=283 Identities=20% Similarity=0.363 Sum_probs=262.7
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|.++|++++|+|+++ ++++|+.||+|+|||+.+++.... +.+|.+.|.+++|+|+|++|+
T Consensus 107 h~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~~~l~ 166 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKLLA 166 (410)
T ss_dssp CSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred cCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCCCEEE
Confidence 667999999999998 789999999999999999876653 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~ 504 (1134)
+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++.++..+.+|...|.++.
T Consensus 167 sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 167 SCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp EEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99999999999999877655 6779999999999999999 899999999999999999999999999999999999
Q ss_pred eeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC--------------------CCEEEEEeeCCC
Q 001160 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD--------------------GTRLFSCGTSKE 564 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~~~~ 564 (1134)
+++++ .+|++++.|++|++||+.+.+....+..|...|.+++|+|+ +.++++++.
T Consensus 242 ~~~~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--- 316 (410)
T 1vyh_C 242 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--- 316 (410)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET---
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC---
Confidence 97754 89999999999999999999999999999999999999996 668888874
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 644 (1134)
|+.|++||++++.++..+.+|.. .|.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.+++|+|++
T Consensus 317 -D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 -DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTA 392 (410)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSS
T ss_pred -CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCC
Confidence 88899999999999999999887 899999999999999999999999999999999999987754 79999999999
Q ss_pred CEEEEEeCCCcEEEEEC
Q 001160 645 SLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1134)
.+|++|+.||+|++|+.
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=359.40 Aligned_cols=295 Identities=14% Similarity=0.209 Sum_probs=263.9
Q ss_pred ceEEEEec-CCCCeeEEEEecCCC---eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQ---TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~---~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
+...+.+. |.+.|++++|+|+++ .+|++|+.|++|+|||+.+++.... ..+.+|...|.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~ 84 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV 84 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence 33445555 999999999998632 3789999999999999987653211 12578999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+.+++....
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence 99999999999999999999999999987655 6778899999999999999 899999999999999999999999
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~w 572 (1134)
+..|...|.+++|+|++ .+|++++.|+.|++||+.+++....+..|...|.+++|+|++++|++++. |+.|++|
T Consensus 160 ~~~~~~~v~~~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw 233 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY 233 (321)
T ss_dssp EECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred ecCCCceEEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 99999999999998855 89999999999999999999888899999999999999999999999974 7889999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
|+++++....+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++++..+..|. ..|.+++|+|++++|++++.
T Consensus 234 d~~~~~~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 234 DVQHANLAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp ETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred ECCCcceeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeC
Confidence 9999999999999887 89999999999999999999999999999999999988664 47999999999999999999
Q ss_pred CCcEEEEECC
Q 001160 653 DNGIKILANS 662 (1134)
Q Consensus 653 dg~i~iw~~~ 662 (1134)
||.|++||..
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=359.75 Aligned_cols=293 Identities=19% Similarity=0.311 Sum_probs=263.0
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.....++. |.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEE
Confidence 34556666 999999999999998 789999999999999998876653 567999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc-cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
|+|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEc
Confidence 999999999999999999999987643 233446789999999999999874 8899999999999999999999999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|.+.|.+++|+|++ .++++|+.|++|++||++++.....+..|...|.+++|+|+++++++++. |+.|++||+
T Consensus 182 ~h~~~v~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~ 255 (340)
T 1got_B 182 GHTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL 255 (340)
T ss_dssp CCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCceEEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEEC
Confidence 999999999998854 89999999999999999999999999999999999999999999999985 788999999
Q ss_pred CCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 575 SEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
++++.+..+.... ...|.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|. ..|.+++|+|+|.+|++|+.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCC
Confidence 9998887775432 2268999999999999999999999999999999999998774 489999999999999999999
Q ss_pred CcEEEEE
Q 001160 654 NGIKILA 660 (1134)
Q Consensus 654 g~i~iw~ 660 (1134)
+.|++||
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=361.04 Aligned_cols=295 Identities=17% Similarity=0.272 Sum_probs=263.6
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
...+++. |.+.|++++|+|+++ +|++|+.||+|+|||..+++.... +..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEE
Confidence 3455565 999999999999998 789999999999999988776543 4568889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCC---ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTG---ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|+|++||+|+.|+.+++|++.... .......+.+|...|.+++|+|++. .|++++.|++|++||+.+++.+..+
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~ 192 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSF 192 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEE
Confidence 9999999999999999999987542 1223346778999999999999999 8999999999999999999999999
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.+|...|.+++++|..++.+|++|+.|++|++||+++++....+..|...|.+++|+|+++++++++. |+.|++||
T Consensus 193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd 268 (354)
T 2pbi_B 193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYD 268 (354)
T ss_dssp ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEE
Confidence 99999999999999877899999999999999999999998899999999999999999999999985 78899999
Q ss_pred CCCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 574 ESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+++++.+..+..+. ...+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcC
Confidence 99988877776543 2268899999999999999999999999999999998887664 58999999999999999999
Q ss_pred CCcEEEEE
Q 001160 653 DNGIKILA 660 (1134)
Q Consensus 653 dg~i~iw~ 660 (1134)
|++|++|+
T Consensus 347 D~~v~vW~ 354 (354)
T 2pbi_B 347 DHTLRVWA 354 (354)
T ss_dssp TSEEEEEC
T ss_pred CCCEEecC
Confidence 99999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=352.17 Aligned_cols=294 Identities=15% Similarity=0.245 Sum_probs=259.6
Q ss_pred CeeeEEecCCCCCeEEEEeecc--CCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
+.....+.+|.+.|++++|+++ .++.+|++|+.|++|++||+..... ...+.+|...|.+++|++++..+++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 3344567799999999999875 3467999999999999999987654 3467889999999999999999999985
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
|+.|++||+.+++.+..+..+.. .+.+++|+|+++++++++.||.|++|++.+++....+..+. ..|.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECC
Confidence 88899999999999999988876 78899999999999999999999999999999988887664 3789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
+|++|++++.||.|++||+.+++ .+..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~-~~~~---------------------------------------------------- 201 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK-LLHT---------------------------------------------------- 201 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-EEEE----------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-EEEE----------------------------------------------------
Confidence 99999999999999999987651 0000
Q ss_pred CccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecc
Q 001160 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
T Consensus 202 -------------------------------------------------------------------------------- 201 (321)
T 3ow8_A 202 -------------------------------------------------------------------------------- 201 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC
Q 001160 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
+.+ | ...|.+++|+||+++|++++ |+.|++||+.+++....+.+|.
T Consensus 202 ------------------------------~~~--h-~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 248 (321)
T 3ow8_A 202 ------------------------------LEG--H-AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248 (321)
T ss_dssp ------------------------------ECC--C-SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred ------------------------------Ecc--c-CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence 011 5 77889999999999999999 8999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
..|.+++|+| ++++|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus 249 ~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 249 SWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999 89999999999999999999999999999999999999999999999999999999999963
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=349.14 Aligned_cols=292 Identities=17% Similarity=0.306 Sum_probs=255.5
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+..+++. |.+.|++++|||+|+ +|++|+.||+|+|||+.++..+.. +..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence 3455666 899999999999998 788999999999999999876653 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecC
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEG 495 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~ 495 (1134)
+|++++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999999987665 7889999999999999999 8999999999999999887 55678899
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CCCCcEEEEEECC--CCCEEEEEeeCCCCCCcEEEE
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSA--DGTRLFSCGTSKEGESHLVEW 572 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~i~~w 572 (1134)
|...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+| ++.++++++. |+.|++|
T Consensus 139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW 213 (304)
T 2ynn_A 139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW 213 (304)
T ss_dssp CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence 9999999999884 33799999999999999998877666554 4557899999987 7789999875 8889999
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC--EEEEE
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS--LLAVT 650 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~ 650 (1134)
|+++++++.++.+|.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++|
T Consensus 214 d~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg 290 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASG 290 (304)
T ss_dssp ETTTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEE
T ss_pred eCCCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEe
Confidence 9999999999999987 89999999999999999999999999999999999998653 4789999999875 57777
Q ss_pred eCCCcEEEEECCC
Q 001160 651 TSDNGIKILANSD 663 (1134)
Q Consensus 651 ~~dg~i~iw~~~~ 663 (1134)
+.+ .+.+|++.+
T Consensus 291 ~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 291 FDN-GFTVLSLGN 302 (304)
T ss_dssp ETT-EEEEEECC-
T ss_pred cCC-ceEEEEecc
Confidence 655 567787754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=366.48 Aligned_cols=306 Identities=17% Similarity=0.285 Sum_probs=265.2
Q ss_pred ccccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCe
Q 001160 333 DDLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISV 411 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V 411 (1134)
+.....+.+++. |.+.|++++|+|+|+ +|++|+.||+|+|||+.+++.... +..|...|
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v 111 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWV 111 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCE
Confidence 344566777787 999999999999998 688999999999999998876653 56799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 412 ~~i~~spdg~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
.+++|+|+|++||+|+.|+.+++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.++
T Consensus 112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTC
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCC
Confidence 9999999999999999999999999975421 1222357799999999999998654 6999999999999999999
Q ss_pred eeeEEe-----cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 488 RKQYTF-----EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 488 ~~~~~~-----~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.+..+ .+|...|.++++++. ++.+|++|+.|++|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 269 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred cEEEEeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence 998877 679999999999764 348999999999999999984 4567788899999999999999999999985
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccC------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC--CCCCC
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRK------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA--DGGLP 633 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~ 633 (1134)
|++|++||+++++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||+..++.+..+.. ..+..
T Consensus 270 ----D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 270 ----DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp ----SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred ----CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence 88899999999999888876532 1488999999999999999999999999999988887732 23456
Q ss_pred CcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.|.+++|+|+|.+|++|+.|++|++|++...
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 8999999999999999999999999998765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=350.51 Aligned_cols=301 Identities=20% Similarity=0.268 Sum_probs=259.2
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+..++. |.+.|++++|+|++..+|++|+.||+|++|++.+...... .+...+.+|...|.+++
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEE
Confidence 34556666 9999999999998755899999999999999875432211 01123678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|+|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||+. ++++..+.+
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~ 146 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLG 146 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEec
Confidence 99999999999999999999999987655 7889999999999999999 89999999999999985 667888999
Q ss_pred CCCCeEEEEeeccC----CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 496 HEAPVYSVCPHHKE----SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 496 h~~~v~~i~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
|...|.++++.|.. ++..+++++.|++|++||+...+....+.+|...|.+++|+|++++|++++. |+.|++
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~i 222 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIML 222 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEE
Confidence 99999999998853 3458999999999999999998888889999999999999999999999985 888999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC------CCCCcceEEEccCCC
Q 001160 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG------GLPASPRLRFNKEGS 645 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~s~d~~ 645 (1134)
||+.+++.+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|||+
T Consensus 223 wd~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 299 (319)
T 3frx_A 223 WNLAAKKAMYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ 299 (319)
T ss_dssp EETTTTEEEEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred EECCCCcEEEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence 9999999999988653 79999999999999888754 59999999888777775331 234578999999999
Q ss_pred EEEEEeCCCcEEEEECCCc
Q 001160 646 LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++|+.||.|++||+.++
T Consensus 300 ~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 300 TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEeecCceEEEEEEeec
Confidence 9999999999999998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=366.52 Aligned_cols=247 Identities=21% Similarity=0.351 Sum_probs=231.5
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.++|++++|+|++++|++|+.||+|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 45799999999999999999999999999999999987665 7889999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++++..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.....+..|...|.++.|+|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 99999999999999999999998865 89999999999999999999999999999999999999999999999985
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCC--------------------CCEEEEEeCCCeEEEEECCCCeeE
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTT--------------------RNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
|+.|++||+.+++....+.+|.. .|.+++|+|+ +.++++|+.|+.|++||+.++.++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 78899999999999999999887 8999999996 678999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+.+|. ..|.+++|+|+|++|++++.||.|++||..++
T Consensus 332 ~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 332 MTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp EEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred EEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 9998764 47999999999999999999999999998765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=350.81 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=227.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999887655 6778999999999999999 899999999999999
Q ss_pred CCCC----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
+.++ +....+.+|.+.|.++.|+++ ..+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9875 355678899999999999875 369999999999999999998888999999999999999999999999
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
+. |+.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+.....|.+++
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 277 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE
Confidence 85 78899999999999999999887 89999999999999999999999999999999888877555555799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCc
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+|+|++|++|+.|+.|++||..++
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccC
Confidence 9999999999999999999998765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=356.09 Aligned_cols=293 Identities=13% Similarity=0.131 Sum_probs=239.5
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeC------CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.|+..|++++|||||+ +||+|+. ||.|++|+..++........ ...+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEEc
Confidence 3788999999999998 7888887 67899999887764432111 134688999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccce-eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 496 (1134)
|+++++ +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 677899999999998765432 224558999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEe
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd 573 (1134)
...|.+++|+++++ .++++++.|++|++||+++++....+ ..+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999988754 58899999999999999988776544 3456689999999985 56667653 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEe
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTT 651 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~ 651 (1134)
+++++.+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+++++.+..+ . +...|++++|+| |+.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~--H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S--HRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-C--CSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-C--CCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887665 3 355899999998 899999999
Q ss_pred CCCcEEEEECCCc
Q 001160 652 SDNGIKILANSDG 664 (1134)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1134)
.||+|++|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999999765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.77 Aligned_cols=304 Identities=16% Similarity=0.236 Sum_probs=250.4
Q ss_pred ceEEEEec-CCC-CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 337 KTVVRTLN-QGS-NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 337 ~~~~~~l~-h~~-~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
.+++.++. |.+ .|++++|||+|+ +||+|+.||+|+|||+.++..... .....+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEE
Confidence 35667776 776 999999999998 789999999999999987753321 01246899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eeeE
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQY 491 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~ 491 (1134)
+|+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++ .++.
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~ 144 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS 144 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence 9999999999999999999999987642 23347889999999999999999 8999999999999999876 3466
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+.+|...|.+++|+|++ .+|++++.|++|++||.+.... ...+.+|...|.+++|+|+|++|++++. |+.|
T Consensus 145 ~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v 218 (345)
T 3fm0_A 145 VLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV 218 (345)
T ss_dssp EECCCCSCEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EecCcCCCeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence 788999999999998865 8999999999999999987653 3577889999999999999999999985 8889
Q ss_pred EEEeCCC---------------CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----eEEE---Ee
Q 001160 570 VEWNESE---------------GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN----MLTT---VD 627 (1134)
Q Consensus 570 ~~wd~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~---~~ 627 (1134)
++||... .+++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. +... ..
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 9999632 134556666444589999999999999999999999999987542 1111 11
Q ss_pred CCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCCchh
Q 001160 628 ADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSDGVR 666 (1134)
Q Consensus 628 ~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~~~ 666 (1134)
...+...|.+++|+|++ .+|++++.||+|++|+..++++
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 22445689999999987 5999999999999999988743
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=343.08 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=239.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccc-cccccccccCCcCeEEEEEcCCCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-PLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
|...|.+++|||||+ +|++++ |+++++||..... |+...... .........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 456799999999998 677776 7888888743211 11000000 00001123467789999999985 68
Q ss_pred EEEeCCCeEEEEEcCCCCcccee-eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQH-LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|.+.|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 24568999999999999999 8999999999999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeCCCCee
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
++|++++. .+|++++.|++|++||+++.+....+. .+...+.+++|+|++ +++++++. |+.|++||++++++
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99988653 588999999999999999988877654 455679999999965 56677763 88899999999999
Q ss_pred EEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEE
Q 001160 580 KRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIK 657 (1134)
Q Consensus 580 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~ 657 (1134)
+.++.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +.+| ...|.+++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999988 89999999998 578999999999999999987654 4444 55899999999886 677999999999
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=352.57 Aligned_cols=320 Identities=15% Similarity=0.189 Sum_probs=228.4
Q ss_pred ccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCccc
Q 001160 735 DVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATA 814 (1134)
Q Consensus 735 ~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 814 (1134)
++.++....+.....|+++.... ..|...|.+++|||||++|++++.|. +++||-
T Consensus 16 ~~~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~------------- 70 (357)
T 4g56_B 16 ENLYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG------------- 70 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE-------------
T ss_pred cceEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC-------------
Confidence 34444555557778888763211 24889999999999999999998753 244442
Q ss_pred ccCcccccCCCCCccccc-cCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEE----EecCCCCceEEEEE
Q 001160 815 NVAPQLWQPPSGTLMTND-INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT----MFMSPPPAATFLAF 889 (1134)
Q Consensus 815 ~~~~~~w~~~~~~~~~~~-~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~ 889 (1134)
.+++|+..++...... .....| ...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|
T Consensus 71 --~v~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 71 --SIWVFKDPEGAPNESLCTAGVQT-EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp --EEEEESSCC---CGGGCSEEEEC-SSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred --eEEEEECCCCCcceeEecccCCC-CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 2344444444322211 111226 888999999999987776669999999999876543 34579999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCC
Q 001160 890 HPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPA 968 (1134)
Q Consensus 890 s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~ 968 (1134)
+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++...... ..
T Consensus 148 sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~ 223 (357)
T 4g56_B 148 FS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FC 223 (357)
T ss_dssp CS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CT
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ec
Confidence 99 999999999999999999999999999999999999999999875 78999999999999999877543211 11
Q ss_pred CCCCCCcCceEEEECCCC-cEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEE
Q 001160 969 GRQSPLVGETKVQFHNDQ-THLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 969 ~~~~~~~~v~~~~fspdg-~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~~~~~dg~I~vw 1044 (1134)
.+. ..+.+++|+|++ .+|++ +.|+.|++||+ +++.+..+ .+|...|++++|+|++ ++|++|+.||+|+||
T Consensus 224 ~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 224 ASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297 (357)
T ss_dssp TCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred ccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccceeEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 222 468999999985 56777 46899999999 56655554 4568999999999997 579999999999999
Q ss_pred eCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1045 DAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
|+++++.+..+. |...+.+++|+|.|+.+|+||+.||+|++|++....
T Consensus 298 d~~~~~~~~~~~-----------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 298 DADFSEVFRDLS-----------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CTTSCEEEEECC-----------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ECCCCcEeEECC-----------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999998876542 335677999999888999999999999999997544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=358.19 Aligned_cols=306 Identities=13% Similarity=0.210 Sum_probs=251.0
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEc----cCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV----GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
+....|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++.+..... ...+.. .........+|.+.|.+++
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEE
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEE
Confidence 3344477899999999999746889999999999999 87763110000 000000 0000001234788999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|++++|++|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeec
Confidence 999999999999999999999 4444443 6778999999999999999 899999999999999999999999988
Q ss_pred CCCC---------------eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 496 HEAP---------------VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 496 h~~~---------------v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
+... +.+++|+++ ..+++++.|+.|++||+.+.+....+..+...|.+++|+|+++++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp C---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc
Confidence 8777 999999875 4799999999999999999988888889999999999999999999987
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
. ++.|++||+.+++.+..+..|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+. ..|.+++|
T Consensus 267 ~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~ 338 (425)
T 1r5m_A 267 D----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRI 338 (425)
T ss_dssp T----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEE
T ss_pred C----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEE
Confidence 4 78899999999999999988877 89999999999 99999999999999999999999888664 47999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCch
Q 001160 641 NKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+|++++|++++.||.|++||+.++.
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999998763
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=337.02 Aligned_cols=248 Identities=18% Similarity=0.298 Sum_probs=225.6
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+|++++|++|+.||+|++||+.++..+. .+..|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEEEECC-CCCEEEEEee
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMMAYSA-DGTRLFSCGT 561 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~ 561 (1134)
+.+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999998865 8999999999999999988744 456788999999999999 6788999875
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
|+.|++||+.++.....+..++...+..+.|+| ++.++++++.|+.|++||+.+++++..+..|. ..|.+++
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~ 235 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAV 235 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEE
T ss_pred ----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEE
Confidence 888999999988877777665555789999987 67899999999999999999999999998774 4799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCc
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+|++++|++++.||+|++||..++
T Consensus 236 ~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 236 FHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999998876
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=343.52 Aligned_cols=249 Identities=14% Similarity=0.201 Sum_probs=226.0
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.+++|+||+++||+|+.||+|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 67899999999999999999999999999999998876554 6678999999999999999 899999999999999
Q ss_pred CCCC------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC--CCCE
Q 001160 484 VVAG------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA--DGTR 555 (1134)
Q Consensus 484 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 555 (1134)
+... .....+.+|...|.+++|++++ ..|++++.|++|++||+++++....+..|...|.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSD--MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8653 3456778899999999998765 7999999999999999999999999999999999999987 5689
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+..++.+..+..+.....+
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~ 287 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccce
Confidence 999875 78899999999999999999887 8999999999999999999999999999999888877765555578
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++|+|+|.+|++++.|+.|++||+.++
T Consensus 288 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 89999999999999999999999998766
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=354.66 Aligned_cols=341 Identities=13% Similarity=0.161 Sum_probs=283.3
Q ss_pred eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC----CCCe------eeEEecC-----
Q 001160 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV----VAGR------KQYTFEG----- 495 (1134)
Q Consensus 431 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~----~~~~------~~~~~~~----- 495 (1134)
.+.+|+++...... ....|.+.|.+++|+|+++. +|++|+.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 26 IDSSDDLDGFVKIL---KEIVKLDNIVSSTWNPLDES-ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp --------CCCEEC---EEEEECSCCSEEEECSSCTT-EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred ccccccchhhhhhe---eeeeccCceEEEEECCCCCc-EEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 35678876543222 34457799999999999985 6899999999999999 8888 4555544
Q ss_pred -----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 496 -----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 496 -----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
|.+.|.+++|+|++ .+|++++.||.|++|| .+++....+..|...|.+++|+|+++++++++. ++.|+
T Consensus 102 ~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 174 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDG--NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV----ENVTI 174 (425)
T ss_dssp ------CBCEEEEEECTTS--SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET----TCCEE
T ss_pred ccccCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec----CCeEE
Confidence 68899999998854 8999999999999999 566777788889999999999999999999874 78899
Q ss_pred EEeCCCCeeEEEecCccCcc---------------eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 571 EWNESEGAIKRTYSGFRKRS---------------LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+||+.+++.+..+..+.. . +.+++|++++ .+++++.+|.|++||+.+++.+..+..+. ..|
T Consensus 175 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i 250 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKET-GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPI 250 (425)
T ss_dssp EEETTTTEEEEEECCC----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCS--SCE
T ss_pred EEECCCCcEEEEeecccc-CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCC--Cce
Confidence 999999999998887765 4 8889999875 68889999999999999999888887654 479
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCC
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
.+++|+|++++|++++.|+.|++||+.++. ...
T Consensus 251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~---------------------------------------------- 283 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN-SQN---------------------------------------------- 283 (425)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEECSSSBS-CSE----------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc-cce----------------------------------------------
Confidence 999999999999999999999999976541 000
Q ss_pred CCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCe
Q 001160 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 795 (1134)
T Consensus 284 -------------------------------------------------------------------------------- 283 (425)
T 1r5m_A 284 -------------------------------------------------------------------------------- 283 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEE
Q 001160 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVM 874 (1134)
Q Consensus 796 v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~ 874 (1134)
. +.. | ...|.+++|+|++ ++++++ ||.|++||+.+++.+
T Consensus 284 --~----------------------------------~~~--~-~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 284 --C----------------------------------FYG--H-SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp --E----------------------------------ECC--C-SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred --E----------------------------------ecC--C-CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence 0 000 4 6788999999999 888888 999999999999999
Q ss_pred EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce--------------------EEEEecCccc--ceEEEEE
Q 001160 875 TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE--------------------VKTKLKGHQN--RITGLAF 932 (1134)
Q Consensus 875 ~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~i~~l~~ 932 (1134)
..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|
T Consensus 324 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 324 ALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW 402 (425)
T ss_dssp EEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred EecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence 99999999999999999 89999999999999999999888 8899999977 9999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCC
Q 001160 933 SPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
+|++++|++++.|+.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=333.47 Aligned_cols=292 Identities=17% Similarity=0.292 Sum_probs=256.9
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
....++. |.+.|++++|+|+|+ +|++|+.||.|++|++.+++.... +.+|...|.+++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~ 73 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW 73 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence 3445555 899999999999998 788999999999999988776543 5689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h 496 (1134)
+|++++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+..|
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 9999999999999999999999987655 7789999999999999999 8999999999999999999999999999
Q ss_pred CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 497 EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
..+|.+++|++++ .+|++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.
T Consensus 149 ~~~v~~~~~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~ 222 (312)
T 4ery_A 149 SDPVSAVHFNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS 222 (312)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred CCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 9999999998754 899999999999999999888766554 45568999999999999999874 7889999999
Q ss_pred CCeeEEEecCccCcc--eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe--
Q 001160 576 EGAIKRTYSGFRKRS--LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-- 651 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-- 651 (1134)
+++.+..+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|++.++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~ 300 (312)
T 4ery_A 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE 300 (312)
T ss_dssp TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence 999999998886522 2233334678899999999999999999999999998764 4799999999999999987
Q ss_pred CCCcEEEEECC
Q 001160 652 SDNGIKILANS 662 (1134)
Q Consensus 652 ~dg~i~iw~~~ 662 (1134)
.|++|++|+..
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=347.25 Aligned_cols=310 Identities=15% Similarity=0.240 Sum_probs=252.1
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
++.+.+.|.+.|+|++|||||+ +||+|+ ++.++||++.+++.+.......-.. .............+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence 4556677999999999999998 678776 7899999999987654311000000 000000000111244469999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
|||++||+|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999876554 7789999999999999999 89999999999999999999888776 66
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
..+.+++++|. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|++++|++++. |+.|+
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~ 281 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 281 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEE
Confidence 78999999873 4489999999999999999988766655 567889999999999999999985 88899
Q ss_pred EEeCCCC------------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 571 EWNESEG------------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 571 ~wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
+||+++. .+...+.+|.. .|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|. ..|.++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v 358 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISV 358 (393)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEE
Confidence 9999753 34567778877 89999999999999999999999999999999999998774 479999
Q ss_pred EEcc------CCCEEEEEeCCCcEEEEECCCc
Q 001160 639 RFNK------EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 639 ~~s~------d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++ ++.+|++|+.||+|++|++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9886 6889999999999999998543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.40 Aligned_cols=297 Identities=15% Similarity=0.206 Sum_probs=234.4
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc-c-cCCcCeEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL-N-DAAISVNR 413 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~-~h~~~V~~ 413 (1134)
.+++.++. |.++|++++|+|+ +||+|+.||+|+|||+.++..... ..+ . +|...|.+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~ 63 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRS 63 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEE
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEE
Confidence 34566777 9999999999998 689999999999999987532110 012 2 49999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC----ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG----ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA--- 486 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~----~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~--- 486 (1134)
++|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+..
T Consensus 64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCC
Confidence 9999999999999999999999986432 1233446789999999999999999 899999999999999943
Q ss_pred -CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC--CceeEecCCCCcEEEEEECCC--CCEEEEEee
Q 001160 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSAD--GTRLFSCGT 561 (1134)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 561 (1134)
.+++..+.+|...|.+++|+|++ .+|++++.|++|++||.... +....+.+|...|.+++|+|+ +.++++++.
T Consensus 142 ~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 142 EYECISVLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp CCEEEEEECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET
T ss_pred CeEEEEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC
Confidence 25677899999999999998865 89999999999999998766 456678899999999999999 678888874
Q ss_pred CCCCCCcEEEEeCCCC--------eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee--EEEEeCCCC
Q 001160 562 SKEGESHLVEWNESEG--------AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM--LTTVDADGG 631 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 631 (1134)
|++|++||+.++ .....+...+...|.+++|++++ .|++++.||.|++|+..+++. .... ...+
T Consensus 220 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 ----DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp ----TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred ----CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 788999998765 44555665333489999999765 899999999999999988742 3222 2233
Q ss_pred CC-CcceEEEcc--CCCEEEEEeCCCcEEEEECCC
Q 001160 632 LP-ASPRLRFNK--EGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 632 ~~-~v~~~~~s~--d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .|.+++|+| ++++|++++.||+|++|++++
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 789999999 789999999999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=343.91 Aligned_cols=293 Identities=13% Similarity=0.149 Sum_probs=226.4
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCc-cccccCCCCCCCCceEEEEec
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL-MTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~h~~~~i~~~~~s 849 (1134)
+...|.+++|+|||++|++++ |+++++||... .+|+...... .........| ...|.+++|+
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s 91 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQT-EAGVADLTWV 91 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEE-SSCEEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeecc-CCCEEEEEEe
Confidence 566799999999999777655 78889997431 1111111000 0000001114 6789999999
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEE----EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMT----MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
||+. +++|+ ||+|+|||+.+++.+. .+.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9964 56666 9999999999886543 3458999999999999 99999999999999999999999999999999
Q ss_pred cceEEEEEecCCC-EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC-cEEEEE-ECCeEEEEe
Q 001160 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ-THLLVV-HESQISVYD 1001 (1134)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg-~~l~~~-~d~~v~vwd 1001 (1134)
+.|++++|+|++. +|++++.|++|++||+.+++....... ..+. ..+.+++|+|++ ++|+++ .|+.|++||
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 9999999999984 789999999999999999875432111 1111 357899999954 577774 689999999
Q ss_pred C-CCcceeccCCCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecC
Q 001160 1002 S-KLECSRSWSPKDALPAPISSAIYSCDG-LLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079 (1134)
Q Consensus 1002 ~-~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1134)
+ +++++..+ .+|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|...+.+++|+|
T Consensus 244 ~~~~~~~~~~---~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~----------~H~~~V~~v~~sp 309 (344)
T 4gqb_B 244 TKSTSCVLSS---AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ----------AHRDFVRDATWSP 309 (344)
T ss_dssp SCC--CCEEE---ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC----------CCSSCEEEEEECS
T ss_pred CCCCcEEEEE---cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec----------CCCCCEEEEEEeC
Confidence 9 66666555 4568999999999998 579999999999999999987653 33 3446678999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCC
Q 001160 1080 SEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1080 ~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
++..+|++|+.||+|++|++.+.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCeEEEEEcCCCeEEEEECCCC
Confidence 66668889999999999999753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=353.42 Aligned_cols=250 Identities=16% Similarity=0.195 Sum_probs=221.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 67899999999999999999999999999999999886554 7789999999999999999 899999999999999
Q ss_pred CCCCe-------eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-----cCCCCcEEEEEECC
Q 001160 484 VVAGR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSA 551 (1134)
Q Consensus 484 ~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~ 551 (1134)
+.+.. ....+.+|.+.|.++.|.|..+ ..|++|+.|++|++||+.+++....+ .+|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87532 3456789999999999988643 67999999999999999998887766 56788999999987
Q ss_pred -CCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 552 -DGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 552 -~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
+++++++++. |+.|++||++ .++.+..+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++.+..+..+
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~ 290 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNRE 290 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSS-CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccc
Confidence 7889999875 8889999998 5678888999887 8999999999999999999999999999999999888654
Q ss_pred CC-----CCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 630 GG-----LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 630 ~~-----~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.. ...|.+++|+|+|++|++|+.||.|++||..++
T Consensus 291 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 32 234899999999999999999999999998765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=382.92 Aligned_cols=555 Identities=12% Similarity=0.088 Sum_probs=396.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+++|||+ +++ ..+ ++.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~ia-f~~-~~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RII-FVC-CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EEE-EEE-TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EEE-EEE-CCcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 3457899999964 444 444 3799999998876432 567999999999999999999
Q ss_pred EEeCC------CeEEEEEcCCCCccceeeEEecccCCe-------eEEEEecCCCcEEEEEEcCC------CcEEEEECC
Q 001160 425 VAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGV-------NDIAFAHPNKQLCIVTCGDD------KMIKVWDVV 485 (1134)
Q Consensus 425 s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~ 485 (1134)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988752 2566788888 9999999998 77777754 468888887
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEec------------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCC
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI------------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
+++.. .+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 77654 333332 34566876 4 7777753 345677765444555566888899999999988
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC--
Q 001160 554 TRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-- 630 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 630 (1134)
..++++. .++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 215 ~l~~~~~----~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~ 286 (1045)
T 1k32_A 215 RIYFITD----IDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLE 286 (1045)
T ss_dssp EEEEEEC----TTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCC
T ss_pred EEEEEEe----ccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCccc
Confidence 4444443 356677776543 44445555554 35667999999988887 48999999995443 33444321
Q ss_pred -------CCCCcceEEEc-cCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 631 -------GLPASPRLRFN-KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 631 -------~~~~v~~~~~s-~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+...+.+++|+ |||++|++++ ++.+.+|+..++. ... +.
T Consensus 287 ~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------------------ 333 (1045)
T 1k32_A 287 SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------------------ 333 (1045)
T ss_dssp BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS------------------------------
T ss_pred ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc------------------------------
Confidence 12258999999 9999999887 7899999876551 000 00
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccccc-ceEEEEEe
Q 001160 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAAS-KVVRLIYT 781 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s 781 (1134)
.+.. .+..++|+
T Consensus 334 -------------------------------------------------------------------~~~~~~~~~~~~s 346 (1045)
T 1k32_A 334 -------------------------------------------------------------------EPLRIRYVRRGGD 346 (1045)
T ss_dssp -------------------------------------------------------------------CCSCEEEEEECSS
T ss_pred -------------------------------------------------------------------CCCcceEEeeeEc
Confidence 0233 57789999
Q ss_pred cCCcceEEeeccCeeE-EeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001160 782 NSGLSLLALASNAVHK-LWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 782 ~~g~~l~~~~~dg~v~-vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
||+.++.++.++.+. +|++. ++.... +.+ | ...+..++|||||++||+++
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~----------------------~~~~~~--l~~--~-~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FEE--N-LGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CCC--C-CCSEEEEEECTTSSEEEEEET
T ss_pred -CCCeEEEEECCCceEEEEECC----------------------CCCceE--ecC--C-ccceeeeEECCCCCEEEEECC
Confidence 999998888777666 66653 222221 112 5 77899999999999999998
Q ss_pred CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC----------cEEEEEcCCceEEEEecCcccceEE
Q 001160 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS----------SVQIYNVRVDEVKTKLKGHQNRITG 929 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg----------~i~iwd~~~~~~~~~l~~h~~~i~~ 929 (1134)
++.|++||+.+++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~ 476 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA 476 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC
Confidence 89999999999998888878999999999999 899998887654 89999999888 6778889889999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE--EE-E-ECCeEEEEeCCCc
Q 001160 930 LAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL--LV-V-HESQISVYDSKLE 1005 (1134)
Q Consensus 930 l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l--~~-~-~d~~v~vwd~~~~ 1005 (1134)
++|+|||++|++++.++...+|+...... . ...+ ..+..+.+++++... +. . .+.....|++++.
T Consensus 477 ~~~spdG~~l~~~s~~~~~~~~~~~~~~~-----~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~ 545 (1045)
T 1k32_A 477 PAFDADSKNLYYLSYRSLDPSPDRVVLNF-----S-FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545 (1045)
T ss_dssp EEECTTSCEEEEEESCCCCCEECSSSSCE-----E-CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred ceEcCCCCEEEEEecccCCcCcchhcccc-----c-cccC-----ceeEEEEeCCCCCCccccCcCccccccccccccCH
Confidence 99999999999999999999998764331 1 0111 234555566555433 22 1 1111224555442
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCcceeeecCCcccccccccCCCCcc
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYA-------------GFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~-------------~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
..+. .....|.+.+..++|+|||+++++ ...+..|.+||+.+++... +. ..+
T Consensus 546 ~~~~-~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~-------------~~v 610 (1045)
T 1k32_A 546 YKRS-SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK-------------NNL 610 (1045)
T ss_dssp GGGC-EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE-------------EEE
T ss_pred hHce-EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-ee-------------cCc
Confidence 2111 112234678999999999987775 1234578889999886432 21 224
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
.+++++| ||++|++++.| .+++|++.+++
T Consensus 611 ~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 4788999 88999998866 89999998765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=333.54 Aligned_cols=247 Identities=19% Similarity=0.285 Sum_probs=220.4
Q ss_pred cccCCcCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc--cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 404 LNDAAISVNRCVWGPDG-LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg-~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... -.....+.+|...|.+++|+|+++ +|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 77999999999999965 8999999999999999875332 123447889999999999999999 899999999999
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC------C
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG------T 554 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~------~ 554 (1134)
+||+.+++.+..+.+|...|.+++|++++ .+|++++.|++|++||++ ......+..|...|.+++|+|.+ .
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS--CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 99999999999999999999999998755 899999999999999996 45667788899999999999954 4
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
.+++++. |+.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~ 239 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---DE 239 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---SC
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---Cc
Confidence 7888874 88899999999999999999887 8999999999999999999999999999999999888754 36
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|.+++|+|++.++++++.+ .+++|++..+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 8999999999999988765 5999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=337.57 Aligned_cols=301 Identities=16% Similarity=0.276 Sum_probs=244.3
Q ss_pred ceEEEEec-CCCCeeEEEE-----ec-CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc
Q 001160 337 KTVVRTLN-QGSNVMSMDF-----HP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI 409 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 409 (1134)
.++..++. |.+.|++++| +| +++ +|++|+.|++|+|||+.+++..... ......+.+|..
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~ 77 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence 34556666 9999999999 77 887 7899999999999999865432110 011123678999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
.|.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++|+.|++|++||+.. ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence 99999999999999999999999999999987655 7789999999999999999 899999999999999874 33
Q ss_pred eEEec---CCCCCeEEEEeeccCC--------ccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 490 QYTFE---GHEAPVYSVCPHHKES--------IQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 490 ~~~~~---~h~~~v~~i~~~~~~~--------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
..... +|...|.+++|+|... +.+|++++.|++|++||. .......+..|...|.+++|+|+|++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 33433 7899999999988642 268999999999999994 44556678889999999999999999999
Q ss_pred EeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE--EEeCC------
Q 001160 559 CGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--TVDAD------ 629 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~------ 629 (1134)
++. |+.|++||+.. ......+.. .. .|.+++|+|++.+++++ .|+.|++||+.+++... .+...
T Consensus 231 gs~----dg~v~iwd~~~~~~~~~~~~~-~~-~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 231 GGK----DKKLLIWDILNLTYPQREFDA-GS-TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EET----TCEEEEEESSCCSSCSEEEEC-SS-CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EcC----CCeEEEEECCCCcccceeecC-CC-cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 985 88899999954 444444432 22 69999999999877654 57789999998876544 33311
Q ss_pred ---CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 630 ---GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 630 ---~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=360.57 Aligned_cols=295 Identities=14% Similarity=0.264 Sum_probs=249.4
Q ss_pred CCCeeEEEEecCCCeEEEEE----------eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVG----------TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
...|.+++|||+|+.++++| +.||.|+|||+.+++.... + ....|...|.+++
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~~~ 74 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFNDLD 74 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEEEE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEEEE
Confidence 34799999999998789999 8899999999998763211 0 0235889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCc-cceeeEEecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCe-----
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGR----- 488 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~----- 488 (1134)
|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~ 152 (416)
T 2pm9_A 75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN 152 (416)
T ss_dssp ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence 999999999999999999999987211 1133467789999999999998 66 89999999999999999886
Q ss_pred -eeE---EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------CCcEEEEEECCCC-CEEE
Q 001160 489 -KQY---TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADG-TRLF 557 (1134)
Q Consensus 489 -~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~ 557 (1134)
... .+.+|...|.+++|+|++ +.+|++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .+++
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 153 YTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp CCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred ccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence 333 346799999999998862 379999999999999999998888877776 6789999999998 5777
Q ss_pred EEeeCCCCCCcEEEEeCCCC-eeEEEec-CccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 558 SCGTSKEGESHLVEWNESEG-AIKRTYS-GFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+++.++ .++.|++||++++ .++..+. +|.. .|.+++|+| ++++|++++.|+.|++||+.+++.+..+..|. ..
T Consensus 232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~~ 307 (416)
T 2pm9_A 232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--NW 307 (416)
T ss_dssp EEECCS-SSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--SC
T ss_pred EEECCC-CCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--Cc
Confidence 776421 1228999999986 6777777 7766 899999999 89999999999999999999999999998764 47
Q ss_pred cceEEEccCC-CEEEEEeCCCcEEEEECCCc
Q 001160 635 SPRLRFNKEG-SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|.+++|+|++ .+|++++.|+.|++|++.++
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 9999999999 89999999999999999876
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=335.73 Aligned_cols=207 Identities=16% Similarity=0.277 Sum_probs=179.2
Q ss_pred eeeEEecccC-CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE---EecCCCCCeEEEEeeccCCccEEEEEecC
Q 001160 445 QHLEIDAHVG-GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---TFEGHEAPVYSVCPHHKESIQFIFSTAID 520 (1134)
Q Consensus 445 ~~~~~~~h~~-~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~i~~~~~~~~~~l~s~~~d 520 (1134)
....+.+|.. .|++++|+|+|+ +|++|+.|++|+|||+.++.... ...+|...|.+++|+|++ .+|++++.|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~--~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~s~D 82 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT--LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG--NYLASASFD 82 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS--CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS--SEEEEEETT
T ss_pred EeeeecCCCCCcEEEEEECCCCC--EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC--CEEEEEECC
Confidence 3447788988 999999999999 89999999999999998886442 236899999999998854 899999999
Q ss_pred CeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccCcceEEEE
Q 001160 521 GKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 521 ~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~ 595 (1134)
+++++||+.... ....+.+|...|.+++|+|++++|++++. |+.|++||+.++. .+..+.+|.. .|.+++
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~----D~~v~iwd~~~~~~~~~~~~~~~h~~-~v~~~~ 157 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR----DKSVWVWEVDEEDEYECVSVLNSHTQ-DVKHVV 157 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEECTTSCEEEEEEECCCCS-CEEEEE
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC----CCeEEEEECCCCCCeEEEEEecCcCC-CeEEEE
Confidence 999999998764 35678889999999999999999999985 7889999998763 4567777777 899999
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 596 FDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|+|++++|++++.|+.|++||..+++.. ..+..| ...|.+++|+|+|++|++++.|++|++|+..
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 9999999999999999999999887644 445544 5689999999999999999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=334.47 Aligned_cols=306 Identities=21% Similarity=0.286 Sum_probs=261.4
Q ss_pred cccceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 334 DLTKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
..+.++..+|. |.+.|++++|+|++..+||||+.||+|+|||+.+++.... .....+.+|...|.
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~ 90 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVS 90 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEE
Confidence 34455667787 9999999999998545899999999999999987654321 11223678999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-E
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-Y 491 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~ 491 (1134)
+++|+|+|++|++|+.|+.|++|+........ ....+...+..+.+++++. +|++|+.|+.+++||+...... .
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEE
Confidence 99999999999999999999999998876544 5567888899999999999 7999999999999998766543 4
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
.+.+|...+..++|++.....++++++.|+.|++||+.+.+....+..|...|.+++|+|++++|++++. |+.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEE
Confidence 4678999999999998877789999999999999999999988899999999999999999999999985 888999
Q ss_pred EeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeC-------CCCCCCcceEEEccCC
Q 001160 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-------DGGLPASPRLRFNKEG 644 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~d~ 644 (1134)
||+++++.+..+..+. .+.+++|+|++. +++++.|+.|++||++++..+..+.. ..+...|.+++|+|||
T Consensus 242 wd~~~~~~~~~~~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 242 WDLNEGKHLYTLDGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EETTTTEEEEEEECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEeccCceeeeecCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999999999888764 799999999875 55666799999999999888776643 2345679999999999
Q ss_pred CEEEEEeCCCcEEEEECCCch
Q 001160 645 SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
++|++|+.||.|+|||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999999883
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.96 Aligned_cols=250 Identities=20% Similarity=0.320 Sum_probs=226.4
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 67899999999999999999999999999999999887554 6789999999999999999 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+..|...|.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 99999999999999999999998865 89999999999999999999988899999999999999999999999975
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc-c
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN-K 642 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~ 642 (1134)
++.|++||+++++.+..+.......+.+++|+|+++++++++.|+.|++||+.+++.+..+..+..........++ +
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred --CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 7889999999999888876666558999999999999999999999999999999999998877543333334444 6
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001160 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++.+|++|+.||.|++||+.++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTC
T ss_pred CCcEEEEECCCCEEEEEECCCc
Confidence 8899999999999999999776
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=335.62 Aligned_cols=286 Identities=13% Similarity=0.170 Sum_probs=244.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.++|.+++|||||+ +++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 456899999999998 566666666666665443322211 346999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEe--cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe--eeEEecCCCCCe
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPV 500 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h~~~v 500 (1134)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999877655444554 7999999999999999 89999999999999999887 567788899999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++|+|++ .++++++.|+.|++||+++.+....+..|...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~~~--~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECCCC--CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 999998854 89999999999999999998888888889999999999999999999874 788999999999988
Q ss_pred EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
..+.. .. .+.+++|+|+++++++++.++.|++||+.+++.. .+..+ ...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~~-~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-CC-ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88763 33 7999999999999999999999999999988764 34333 45799999999999999999999999999
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8776
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=327.13 Aligned_cols=319 Identities=12% Similarity=0.166 Sum_probs=269.6
Q ss_pred cCCcceeEeeCCCCCCccccCc--------cccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccc
Q 001160 312 TGQSDEVSFAGVAHTPNVYSQD--------DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLA 383 (1134)
Q Consensus 312 ~~~~~~v~~s~~g~~~~~~~~~--------~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~ 383 (1134)
.+++.+++++|||+.++....+ ......+..+.|.+.|++++|+|+++ ++++++ ||.|++||+.+++...
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCS
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCcee
Confidence 3467889999999887544322 23445667778999999999999998 677888 9999999999876433
Q ss_pred cccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec
Q 001160 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH 463 (1134)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~ 463 (1134)
.. ......+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|
T Consensus 87 ~~--------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~ 151 (337)
T 1gxr_A 87 PV--------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISP 151 (337)
T ss_dssp CS--------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECT
T ss_pred ee--------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECC
Confidence 20 00012368999999999999999999999999999999987632 2336778999999999999
Q ss_pred CCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCc
Q 001160 464 PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNW 543 (1134)
Q Consensus 464 d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 543 (1134)
+++ ++++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+. +...
T Consensus 152 ~~~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~ 226 (337)
T 1gxr_A 152 DSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226 (337)
T ss_dssp TSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred CCC--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence 999 89999999999999999999999999999999999998854 899999999999999999887766654 5678
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
+.+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 999999999999999874 778999999988764 5666666 8999999999999999999999999999999888
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..... ...+.+++|+|++++|++++.||.|++|++
T Consensus 301 ~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQSKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 65543 347899999999999999999999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=355.12 Aligned_cols=330 Identities=11% Similarity=0.167 Sum_probs=275.4
Q ss_pred cCCeeEEEEecCCCcEEEEEE----------cCCCcEEEEECCCCe---eeEEecCCCCCeEEEEeeccCCccEEEEEec
Q 001160 453 VGGVNDIAFAHPNKQLCIVTC----------GDDKMIKVWDVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg----------~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~ 519 (1134)
...|.+++|+|+++. ++++| +.|+.|++||+.++. .+..+ .|...|.+++|+|++ .+|++++.
T Consensus 12 ~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~ 87 (416)
T 2pm9_A 12 FSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN--KIIAGALD 87 (416)
T ss_dssp EEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS--SCEEEEES
T ss_pred hhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC--CeEEEEcc
Confidence 346889999999875 78898 899999999999876 34444 589999999998754 89999999
Q ss_pred CCeEEEEEccC----CCceeEecCCCCcEEEEEECCC-CCEEEEEeeCCCCCCcEEEEeCCCCe------eEEE---ecC
Q 001160 520 DGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWNESEGA------IKRT---YSG 585 (1134)
Q Consensus 520 d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~---~~~ 585 (1134)
||.|++||+.. ......+..|...|.+++|+|+ ++++++++. ++.|++||+.+++ .... +..
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCccccccccccccccccC
Confidence 99999999987 3466778889999999999998 889999874 7889999999876 3333 345
Q ss_pred ccCcceEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEccCC-CEEEEEeCCC---cE
Q 001160 586 FRKRSLGVVQFDTT-RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEG-SLLAVTTSDN---GI 656 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~-~~l~~~~~dg---~i 656 (1134)
|.. .|.+++|+|+ +.++++++.|+.|++||+.+++.+..+..+.. ...|.+++|+|++ .++++++.|+ .|
T Consensus 164 ~~~-~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 164 SVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp SSC-CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCC-CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 555 8999999999 78999999999999999999999988876531 4579999999997 6899999998 99
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
++||+.++......
T Consensus 243 ~~~d~~~~~~~~~~------------------------------------------------------------------ 256 (416)
T 2pm9_A 243 LIWDLRNANTPLQT------------------------------------------------------------------ 256 (416)
T ss_dssp CEEETTSTTSCSBC------------------------------------------------------------------
T ss_pred EEEeCCCCCCCcEE------------------------------------------------------------------
Confidence 99998754100000
Q ss_pred ccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCccccc
Q 001160 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
T Consensus 257 -------------------------------------------------------------------------------- 256 (416)
T 2pm9_A 257 -------------------------------------------------------------------------------- 256 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCC
Q 001160 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
+. ..| ...|.+++|+| ++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++
T Consensus 257 ----------------~~-~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~ 317 (416)
T 2pm9_A 257 ----------------LN-QGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EA 317 (416)
T ss_dssp ----------------CC-SCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TC
T ss_pred ----------------ee-cCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CC
Confidence 00 015 77899999999 899999998 89999999999999999999999999999999 66
Q ss_pred -cEEEEEeCCCcEEEEEcCCceEEEEec-----------------------------------CcccceEEEEEecCCCE
Q 001160 895 -NIIAIGMEDSSVQIYNVRVDEVKTKLK-----------------------------------GHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 895 -~~lasg~~dg~i~iwd~~~~~~~~~l~-----------------------------------~h~~~i~~l~~s~d~~~ 938 (1134)
.+|++++.||.|++||+.+++...... .|...+.+++|+|||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 899999999999999998765322211 16778889999999999
Q ss_pred EEEEcCCCcEEEEeCCCc
Q 001160 939 LVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~ 956 (1134)
|++++.|++|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=348.26 Aligned_cols=283 Identities=15% Similarity=0.152 Sum_probs=239.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.+++++|+|+|+ +|++|+.||.|++||+.+++.... +..| ..+....|+|++++||+|+
T Consensus 58 ~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 58 AGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp CCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEEE
T ss_pred cccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEEE
Confidence 466899999998 578899999999999998776542 3334 4456668899999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 117 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999876543 5568999999999999999 899999999999999999999999999999999999988
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecC---CC---------------------CcEEEEEECCCCCEEEEEeeCC
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA---PG---------------------NWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~---------------------~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
++ .+|++++.|++|++||+++++....+.. +. ..+.+++|+|+++++++++.
T Consensus 192 ~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-- 267 (420)
T 3vl1_A 192 RG--RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-- 267 (420)
T ss_dssp TT--TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET--
T ss_pred CC--CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC--
Confidence 54 8999999999999999998887777654 22 33444556889999999874
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEc
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s 641 (1134)
++.|++||+++++.+..+...+...+.+++|+|++. ++++++.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 --dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~- 343 (420)
T 3vl1_A 268 --SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF- 343 (420)
T ss_dssp --TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE-
T ss_pred --CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe-
Confidence 788999999999988888765555899999999998 999999999999999998754 66666532 236777754
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001160 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+++++|++++.|+.|++|++.+.
T Consensus 344 ~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTEEEEEETTTEEEEEEEECCT
T ss_pred CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=353.32 Aligned_cols=275 Identities=10% Similarity=0.060 Sum_probs=214.0
Q ss_pred cceEEEEecCCCCeeEEEEecCC-C-------eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQ-Q-------TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg-~-------~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
++....++.+.+.|++|+|+|++ . .+||+|+.++. .
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~---------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D---------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------
Confidence 45556677788999999999997 1 47888875431 0
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eeeEEecccCCeeEEEEecC------CCcEEEEEEcCCCcEE
Q 001160 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHP------NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d------~~~~~l~sg~~d~~i~ 480 (1134)
-..+|+++.+|+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+ +. +||+++.|++|+
T Consensus 167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr 238 (524)
T 2j04_B 167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN 238 (524)
T ss_dssp ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence 0136899999999999999999998876422 12245678899999999997 45 899999999999
Q ss_pred EEECCCCee-----------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc-eeEecCCCCcEEEE-
Q 001160 481 VWDVVAGRK-----------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-RVDYDAPGNWCTMM- 547 (1134)
Q Consensus 481 iwd~~~~~~-----------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~- 547 (1134)
+||+.++.. ...+.+|...|++++|++. ..|++|+.||+|++||++++.. ...+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999987642 3478899999999999863 4899999999999999997644 44678899999999
Q ss_pred -EECCCC-CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE
Q 001160 548 -AYSADG-TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 548 -~~s~~~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1134)
+|+|++ .+|++++. |++|++||+++++.+..+.+|.. ..|.+++|+|+++.+++++.|++|++||++++.++.
T Consensus 316 ~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH 391 (524)
T ss_dssp EECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE
T ss_pred EEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce
Confidence 678888 88999985 88999999999888777777653 247889999999999999999999999999998888
Q ss_pred EEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 625 TVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+..| ...|.+++|+|+|++|++|+.||+|++||...
T Consensus 392 ~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 392 PLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred eeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 88766 45899999999999999999999999999743
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=345.69 Aligned_cols=345 Identities=11% Similarity=0.108 Sum_probs=282.5
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999998876554 33445 4455557899999 89999999999999999999
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCc
Q 001160 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESH 568 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 568 (1134)
....+.+|...|.+++|+|++ .+|++++.|++|++||+.+.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG--EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECCCC--CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 998889999999999998864 89999999999999999999999999999999999999999999999875 788
Q ss_pred EEEEeCCCCeeEEEecCcc--CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCE
Q 001160 569 LVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 569 i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 646 (1134)
|++||+++++.+..+..+. ...+.+++|.+.+... ... .+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCE
Confidence 9999999999999988642 2368888887654321 001 11346788999999999
Q ss_pred EEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccC
Q 001160 647 LAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLG 726 (1134)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1134)
|++++.||.|++||+.++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~----------------------------------------------------------- 282 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT----------------------------------------------------------- 282 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE-----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCcee-----------------------------------------------------------
Confidence 999999999999998655100
Q ss_pred CCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccC
Q 001160 727 TIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTER 806 (1134)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~ 806 (1134)
.. +
T Consensus 283 -------------------------------------------------------------~~--------~-------- 285 (420)
T 3vl1_A 283 -------------------------------------------------------------IQ--------L-------- 285 (420)
T ss_dssp -------------------------------------------------------------EE--------E--------
T ss_pred -------------------------------------------------------------EE--------c--------
Confidence 00 0
Q ss_pred CCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC-EEEEEe-CCeEEEEECCCCeE-EEEecC-CCC
Q 001160 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS-YVMSAS-GGKVSLFNMMTFKV-MTMFMS-PPP 882 (1134)
Q Consensus 807 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~-~la~~s-dg~i~vwd~~~~~~-~~~~~~-~~~ 882 (1134)
.. .| ...|.+++|+|++. +|++++ ||.|++||+.+++. +..+.+ |..
T Consensus 286 --------------------------~~--~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 336 (420)
T 3vl1_A 286 --------------------------PS--KF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT 336 (420)
T ss_dssp --------------------------CC--TT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred --------------------------cc--cc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence 00 14 67889999999998 899888 89999999988643 566665 667
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc---------eEEEEecCcccceEEEEEecCCC---EEEEEcCCCcEEE
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD---------EVKTKLKGHQNRITGLAFSPTLN---ALVSSGADAQLCM 950 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~---------~~~~~l~~h~~~i~~l~~s~d~~---~l~s~~~D~~i~i 950 (1134)
.|.++.++ ++++|++++.||.|++|++... .....+.+|.+.|.+++|+||+. .|++++.++.+.+
T Consensus 337 ~v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 337 PINNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 78888654 5789999999999999998763 22234668899999999999999 7888888999999
Q ss_pred EeCCC
Q 001160 951 WSIDK 955 (1134)
Q Consensus 951 Wd~~~ 955 (1134)
|+++.
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=323.22 Aligned_cols=306 Identities=15% Similarity=0.199 Sum_probs=231.6
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNM--NMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.+.+..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ +....+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4567788899888 8999999987 9999999999999999875 445555332355689999999999999999999
Q ss_pred CcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccc
Q 001160 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1134)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1134)
++|++|+....... ..
T Consensus 80 ~~v~iw~~~~~~~~--~~-------------------------------------------------------------- 95 (330)
T 2hes_X 80 STVSIWAKEESADR--TF-------------------------------------------------------------- 95 (330)
T ss_dssp SCEEEEEC---------C--------------------------------------------------------------
T ss_pred CcEEEEEcccCcCc--cc--------------------------------------------------------------
Confidence 99999997543000 00
Q ss_pred cccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcc
Q 001160 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1134)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 813 (1134)
... + +..
T Consensus 96 -------------------------------------------------~~~-~--------~~~--------------- 102 (330)
T 2hes_X 96 -------------------------------------------------EMD-L--------LAI--------------- 102 (330)
T ss_dssp -------------------------------------------------CCE-E--------EEE---------------
T ss_pred -------------------------------------------------cce-e--------EEE---------------
Confidence 000 0 000
Q ss_pred cccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCC----CeEEEEecCCCCceEEEE
Q 001160 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMT----FKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 814 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~ 888 (1134)
+.+ | ...|.+++|+|+|++||+|+ |++|++||+.. .+++..+.+|...|.+++
T Consensus 103 -------------------~~~--h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 103 -------------------IEG--H-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -------------------EC-------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred -------------------EcC--C-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 112 6 88899999999999999998 89999999842 367788999999999999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCccccc---c
Q 001160 889 FHPQDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLK---S 961 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~---~ 961 (1134)
|+| ++.+|++|+.|++|++||+.++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++.... .
T Consensus 161 ~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 239 (330)
T 2hes_X 161 WHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW 239 (330)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred ECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence 999 8999999999999999998776 678899999999999999998 7789999999999999997653211 0
Q ss_pred eeeecCCC-CCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCC-CeEEEEEcc--CCCEEEEE
Q 001160 962 RFIQAPAG-RQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPA-PISSAIYSC--DGLLVYAG 1035 (1134)
Q Consensus 962 ~~~~~~~~-~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~-~v~~v~~s~--dg~~l~~~ 1035 (1134)
.......+ |. ..|.+++|++++ +|++ +.|+.|++||. .+..........+|.. .|.+++|+| ++++|++|
T Consensus 240 ~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 240 VCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred EEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 12222222 44 579999999877 4555 78999999998 3321111111245666 899999999 78999999
Q ss_pred ecCCcEEEEeCCC
Q 001160 1036 FCDGAIGVFDAET 1048 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~ 1048 (1134)
+.||+|++||+++
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.82 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=210.1
Q ss_pred ccccCCcCeEEEEE-----cC-CCCEEEEEeCCCeEEEEEcCCCCc----cceeeEEecccCCeeEEEEecCCCcEEEEE
Q 001160 403 LLNDAAISVNRCVW-----GP-DGLMLGVAFSKHIVHLYTYNPTGE----LRQHLEIDAHVGGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~-----sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s 472 (1134)
.+.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 37789999999999 77 999999999999999999976542 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec---CCCCcEEEEEE
Q 001160 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD---APGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 549 (1134)
|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.. ....... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN--RQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST--TEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC--CEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 9999999999999999999999999999999998865 8999999999999999973 3333332 57778999999
Q ss_pred CCCC----------CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC-
Q 001160 550 SADG----------TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD- 618 (1134)
Q Consensus 550 s~~~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~- 618 (1134)
+|++ .++++++. |+.|++|| ..++....+.+|.. .|.+++|+|++++|++|+.||.|++||+.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68888874 88899999 55677788888877 89999999999999999999999999994
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.......+.. . ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 4444444432 2 368999999999887755 5778999999766
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=352.20 Aligned_cols=357 Identities=9% Similarity=0.092 Sum_probs=268.2
Q ss_pred ccCCcCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEE
Q 001160 405 NDAAISVNRCVWGP-DGLMLGVAFSKHIVHLYTYNP---TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 405 ~~h~~~V~~i~~sp-dg~~las~~~dg~i~iwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~ 480 (1134)
.+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|.+++|+|+++ +|++|+.|+.|+
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~ 136 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQII 136 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEE
Confidence 67999999999999 999999999999999999977 5433333333 5999999999999999 899999999999
Q ss_pred EEECC---CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEE--ECCCCCE
Q 001160 481 VWDVV---AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA--YSADGTR 555 (1134)
Q Consensus 481 iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~~~~~ 555 (1134)
+||+. +++.+..+.+| .+..+.+++.. +...+.++. +++++.+
T Consensus 137 vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 137 VLKVNHYQQESEVKFLNCE--CIRKINLKNFG------------------------------KNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------------------------------SCCCEEEEEEEECSSCEE
T ss_pred EEEeccccCCceeeccccc--eeEEEEccCcc------------------------------cccCceEEEEEEcCCCCE
Confidence 99994 77777776666 67777776532 122334444 6789999
Q ss_pred EEEEeeCCCCCCcEEEEeCCCCeeEEEecC--ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSG--FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+++++. ++.|++||+++++.+..+.+ |.. .|.+++|+|++++|++|+.||.|++||+++++++..+.... ..
T Consensus 185 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~ 258 (437)
T 3gre_A 185 LVALTN----LSRVIIFDIRTLERLQIIENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HA 258 (437)
T ss_dssp EEEEET----TSEEEEEETTTCCEEEEEECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CE
T ss_pred EEEEeC----CCeEEEEeCCCCeeeEEEccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CC
Confidence 999874 78899999999999999998 555 89999999999999999999999999999999998886322 24
Q ss_pred CcceEEEc----cCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCC
Q 001160 634 ASPRLRFN----KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPT 709 (1134)
Q Consensus 634 ~v~~~~~s----~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1134)
.|.+++|+ +++.+|++++.||.|++||+.++ +....+.++..
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~--------------------------------- 304 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDE--------------------------------- 304 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSS---------------------------------
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCC---------------------------------
Confidence 78999555 56889999999999999999887 44444444322
Q ss_pred CCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEE
Q 001160 710 LERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA 789 (1134)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 789 (1134)
.+..+.|+|+++.+
T Consensus 305 ----------------------------------------------------------------~~~~~~~~~~~~~l-- 318 (437)
T 3gre_A 305 ----------------------------------------------------------------QPSMEHFLPIEKGL-- 318 (437)
T ss_dssp ----------------------------------------------------------------CCCGGGGSCBCSSG--
T ss_pred ----------------------------------------------------------------CCccceeccccccc--
Confidence 12222233333322
Q ss_pred eeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEEC
Q 001160 790 LASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNM 868 (1134)
Q Consensus 790 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~ 868 (1134)
.+.. +.+..| ...|++++|+ ++++|++|+ ||.|++||+
T Consensus 319 --~~~~-------------------------------------~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 319 --EELN-------------------------------------FCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp --GGCC-------------------------------------CCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred --ccce-------------------------------------eccccc-CCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 0000 111226 8889999999 889999998 999999999
Q ss_pred CCCeEEEEecCCCC---ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC--CCEEEEEc
Q 001160 869 MTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT--LNALVSSG 943 (1134)
Q Consensus 869 ~~~~~~~~~~~~~~---~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~ 943 (1134)
.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.|++++|+++ +.+|+|++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99998888887643 456667777 55555443 334444555667789999999999998 78999999
Q ss_pred CCCcEEEEe
Q 001160 944 ADAQLCMWS 952 (1134)
Q Consensus 944 ~D~~i~iWd 952 (1134)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=327.15 Aligned_cols=303 Identities=14% Similarity=0.264 Sum_probs=235.7
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC------------------CcEEEEEECCCCCEE
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG------------------NWCTMMAYSADGTRL 556 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~~~~~l 556 (1134)
+|...|.+++|+|++ .+|++++ ++++++|++.+++....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fspdg--~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG--EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTS--SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCC--CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 699999999998854 8898876 7899999999888776665432 248999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++++. |+.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.+++....+..+ ..+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcE
Confidence 99975 78899999999999999999987 8999999999999999999999999999999988887654 3589
Q ss_pred eEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCC
Q 001160 637 RLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDR 715 (1134)
Q Consensus 637 ~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1134)
+++|+| ++++|++++.|+.|++||+.++ .....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeecccc----------------------------------------
Confidence 999999 9999999999999999998766 1111110000
Q ss_pred CCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCe
Q 001160 716 GPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAV 795 (1134)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 795 (1134)
....+|...|.+++|+|+|++|++++.|+.
T Consensus 250 --------------------------------------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 250 --------------------------------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --------------------------------------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 000114445555555555555555555555
Q ss_pred eEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEE
Q 001160 796 HKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMT 875 (1134)
Q Consensus 796 v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~ 875 (1134)
|++||+..... ..... ....+.+..
T Consensus 280 v~~wd~~~~~~------------------------------------~~~~~-------------------~~~~~~~~~ 304 (393)
T 1erj_A 280 VKLWNLQNANN------------------------------------KSDSK-------------------TPNSGTCEV 304 (393)
T ss_dssp EEEEEC----------------------------------------------------------------------CEEE
T ss_pred EEEEECCCCCC------------------------------------ccccc-------------------CCCCCcceE
Confidence 55555321000 00000 001234556
Q ss_pred EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEec------CCCEEEEEcCCCcEE
Q 001160 876 MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP------TLNALVSSGADAQLC 949 (1134)
Q Consensus 876 ~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~------d~~~l~s~~~D~~i~ 949 (1134)
.+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++.+|+|++.|++|+
T Consensus 305 ~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp EEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 7788999999999999 899999999999999999999999999999999999999986 688999999999999
Q ss_pred EEeCCC
Q 001160 950 MWSIDK 955 (1134)
Q Consensus 950 iWd~~~ 955 (1134)
+|++..
T Consensus 384 iW~~~~ 389 (393)
T 1erj_A 384 IWKYKK 389 (393)
T ss_dssp EEEEEE
T ss_pred ECcccc
Confidence 999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=357.08 Aligned_cols=298 Identities=20% Similarity=0.284 Sum_probs=253.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
....+. |.+.|++++|+|++..+|++|+.||+|+|||+.+...... .....+.+|...|.+++|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence 344555 9999999999998766899999999999999987543211 0111367899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe---c
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF---E 494 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---~ 494 (1134)
|+|++|++|+.|++|++||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 514 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE 514 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence 999999999999999999999886555 7789999999999999999 7999999999999997655433322 4
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|...|.+++|+|+.....+++++.|++|++||+++.+....+..|...|.+++|+|++++|++++. |+.|++||+
T Consensus 515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~ 590 (694)
T 3dm0_A 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL 590 (694)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 6899999999998765578999999999999999999888899999999999999999999999985 888999999
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-----------------CCCcce
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-----------------LPASPR 637 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~ 637 (1134)
.+++.+..+..+. .+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+
T Consensus 591 ~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGKKLYSLEANS--VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTEEEECCBCSS--CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCceEEEecCCC--cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9999988876543 799999999998777765 56699999999998887753311 113678
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECC
Q 001160 638 LRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 638 ~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
++|+|+|++|++|+.||.|++|++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999975
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=365.44 Aligned_cols=534 Identities=11% Similarity=0.006 Sum_probs=378.7
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeC-----CCcEEEEEccCccccccccceeecccccccccccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTN-----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
.+|.++...++......|...|.+++|||||++|++++.. +..|.+||+.+++...
T Consensus 34 ~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~------------------- 94 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR------------------- 94 (1045)
T ss_dssp EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-------------------
T ss_pred cEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE-------------------
Confidence 3555665566666666699999999999999954443332 2489999998876321
Q ss_pred ccccCCcCe-------EEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEE
Q 001160 403 LLNDAAISV-------NRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469 (1134)
Q Consensus 403 ~l~~h~~~V-------~~i~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~ 469 (1134)
+..|...+ .+++|||||+++++++.+ ..|.+|++.++... .+..+ ....++|+| | +
T Consensus 95 -lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 95 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp -CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---E
T ss_pred -cccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---E
Confidence 56677777 999999999977777654 46888888776432 22222 345678999 6 4
Q ss_pred EEEEcC------------CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeE
Q 001160 470 IVTCGD------------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVD 536 (1134)
Q Consensus 470 l~sg~~------------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 536 (1134)
+++++. +....+|....+.....+.+|...+.++.|+++ .++++++.|+++++|.++.. .....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d---~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC---EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666542 334566654433445566899999999999764 57778888999999987653 33344
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc----------CcceEEEEEe-CCCCEEEE
Q 001160 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFD-TTRNRFLA 605 (1134)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~ 605 (1134)
+..+. .+...+|+|||++++++. ++.|++||+.... +..+..+. ...+.+++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44443 456779999999998874 6779999995444 33555421 1258889999 99999998
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCC-CcceEEEccCCCEEEEEeCCCcEE-EEECCCchhhhhhhcCCcccccCCCC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGGLP-ASPRLRFNKEGSLLAVTTSDNGIK-ILANSDGVRLLRMLEGRAMDKNRCPS 683 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1134)
++ ++.|++|++.+++... +..+ .. .+..++|+ ||+.|++++.++.+. +|+..++. .. .
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~-~------------- 373 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPEP--LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AE-K------------- 373 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSCC--SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EE-E-------------
T ss_pred EE-cCEEEEEcCCCCceEE-ccCC--CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ce-E-------------
Confidence 87 7899999998877544 3322 23 67889999 999999999888888 88876541 00 0
Q ss_pred CCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeE
Q 001160 684 EPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKA 763 (1134)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~ 763 (1134)
T Consensus 374 -------------------------------------------------------------------------------- 373 (1045)
T 1k32_A 374 -------------------------------------------------------------------------------- 373 (1045)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCce
Q 001160 764 LRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESA 843 (1134)
Q Consensus 764 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i 843 (1134)
+. .+...+..++|+|||+.|++++.++.+++||+.+ ++.... ..+ | ...+
T Consensus 374 --l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----------------------g~~~~~-~~~--~-~~~v 423 (1045)
T 1k32_A 374 --FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----------------------GKPTVI-ERS--R-EAMI 423 (1045)
T ss_dssp --CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----------------------CCEEEE-EEC--S-SSCC
T ss_pred --ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCC----------------------CceEEe-ccC--C-CCCc
Confidence 00 1345678999999999999999999999998642 322211 112 5 7788
Q ss_pred EEEEeccCCCEEEEEe-CC----------eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC
Q 001160 844 ACIALSKNDSYVMSAS-GG----------KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR 912 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s-dg----------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~ 912 (1134)
.+++|||||++|++++ ++ .|++||+.+++ ...+..|...+.+++|+| +|++|++++.++...+|+..
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSS
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchh
Confidence 9999999999999886 44 89999999887 677888888899999999 89999999999999999976
Q ss_pred CceEEEEecCcccceEEEEEecCCCEE--EEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 913 VDEVKTKLKGHQNRITGLAFSPTLNAL--VSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 913 ~~~~~~~l~~h~~~i~~l~~s~d~~~l--~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
..... ..+...+..+.+++++... +..+. +.....|+++.... .+.....+. ..+..++|+|||+++
T Consensus 502 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~----~~~~l~~~~---~~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 502 VLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK----RSSPINVDP---GDYRMIIPLESSILI 571 (1045)
T ss_dssp SSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGG----GCEECSCCC---BCEEEEEECSSEEEE
T ss_pred ccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhH----ceEEcCCCC---CChhheEEcCCCeEE
Confidence 54332 2245556777777766543 22222 22223466554211 111112222 457899999999988
Q ss_pred EE------------E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001160 990 LV------------V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 990 ~~------------~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
++ + ....|.+||+.......+. ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 1 2347888898554444432 468899999999999998766 89999999887
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=354.24 Aligned_cols=224 Identities=7% Similarity=0.000 Sum_probs=170.3
Q ss_pred CCcCeEEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 407 AAISVNRCVWGPDG---------LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 407 h~~~V~~i~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
+.+.|.+++|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999766420 01368888 899999999
Q ss_pred cEEEEECCCCeee----EEecCCCCCeEEEEeecc----CCccEEEEEecCCeEEEEEccCCCc-----------eeEec
Q 001160 478 MIKVWDVVAGRKQ----YTFEGHEAPVYSVCPHHK----ESIQFIFSTAIDGKIKAWLYDYLGS-----------RVDYD 538 (1134)
Q Consensus 478 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~ 538 (1134)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887643 346678899999999996 3467999999999999999986542 23567
Q ss_pred CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEEecCccCcceEEE--EEeCCC-CEEEEEeCCCeEEE
Q 001160 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRTYSGFRKRSLGVV--QFDTTR-NRFLAAGDEFQIKF 614 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 614 (1134)
+|...|++++|++++ .|++++. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788999999999864 7888874 8899999999764 4556888877 89998 578887 89999999999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 99998887766665533235789999999999999999999999998765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.23 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=246.2
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+......+. |.+.|++++|+|+|..+|++|+.||.|+|||+.+++..... ...+|...|.++
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~ 124 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGM 124 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEE
Confidence 455666666 89999999999999338899999999999999987655321 124699999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 415 VWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 415 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+
T Consensus 125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~ 200 (383)
T 3ei3_B 125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE 200 (383)
T ss_dssp EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence 9999 789999999999999999996 33332222234558899999999999 8999999999999998 68888999
Q ss_pred cCCCCCeEEEEeeccCCcc-EEEEEecCCeEEEEEccC----CCceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCC
Q 001160 494 EGHEAPVYSVCPHHKESIQ-FIFSTAIDGKIKAWLYDY----LGSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~-~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1134)
.+|...|.+++|+|++ . ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++
T Consensus 201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~ 273 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN 273 (383)
T ss_dssp ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence 9999999999998865 5 999999999999999997 3344444 6888999999999 9999999875 78
Q ss_pred cEEEEeCCCCeeEEEecCccC----------------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001160 568 HLVEWNESEGAIKRTYSGFRK----------------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.|++||+++++.+..+.+|.. ..+..++|+|++++ +++.|+.|++||+.+++.+..+..+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~ 351 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA 351 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence 899999999887777765431 13444666666665 677999999999999999999987655
Q ss_pred CCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
...+..++|+|++++|++++ |+.|++||+++
T Consensus 352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55677889999999999997 89999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=328.43 Aligned_cols=319 Identities=18% Similarity=0.301 Sum_probs=274.2
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+.+|.+.|.. +++++|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 5678887643 355579999999999999999999987665 778999999999998 44 799999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+.+++.+..+.+|...|.++++++ ..+++++.||+|++||+.+++....+..|...|.+++| +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET----TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEecC----CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 999999999999999999999853 68999999999999999999999999999999999999 7888998874
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
++.|++||+++++.+..+.+|.. .+.+++| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+ +
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~ 328 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHTN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--K 328 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--E
T ss_pred --CCEEEEEECCCCcEeEEecCCCC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--e
Confidence 78899999999999999998877 8999998 789999999999999999999999998876643 5666665 5
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
+.++++++.||.|++||+.++ +....+.+
T Consensus 329 ~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~-------------------------------------------------- 357 (445)
T 2ovr_B 329 DNILVSGNADSTVKIWDIKTG-QCLQTLQG-------------------------------------------------- 357 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-CEEEEECS--------------------------------------------------
T ss_pred CCEEEEEeCCCeEEEEECCCC-cEEEEEcc--------------------------------------------------
Confidence 779999999999999998765 11100000
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccc
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQR 803 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~ 803 (1134)
T Consensus 358 -------------------------------------------------------------------------------- 357 (445)
T 2ovr_B 358 -------------------------------------------------------------------------------- 357 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEe-----
Q 001160 804 TERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF----- 877 (1134)
Q Consensus 804 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~----- 877 (1134)
. ..| ...|.+++|+ ++++++|+ ||.|++||+.+++.+..+
T Consensus 358 -----------------------------~--~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 403 (445)
T 2ovr_B 358 -----------------------------P--NKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403 (445)
T ss_dssp -----------------------------T--TSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred -----------------------------C--CCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc
Confidence 0 014 7778888884 67899998 999999999999998888
Q ss_pred cCCCCceEEEEEcCCCCcEEEEEeCCCc----EEEEEcCC
Q 001160 878 MSPPPAATFLAFHPQDNNIIAIGMEDSS----VQIYNVRV 913 (1134)
Q Consensus 878 ~~~~~~i~~l~~s~~~~~~lasg~~dg~----i~iwd~~~ 913 (1134)
.+|.+.|.+++|+| ++.++|+|+.||+ |.|||+..
T Consensus 404 ~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 404 GGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 46888999999999 9999999999998 99999874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=328.98 Aligned_cols=317 Identities=20% Similarity=0.320 Sum_probs=274.4
Q ss_pred EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEE
Q 001160 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527 (1134)
Q Consensus 448 ~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd 527 (1134)
.+.+|.+.|.. +++++++ ++++|+.||.|++||+.+++.+..+.+|.+.|.++++++ .++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEEeCCCeEEEEE
Confidence 67789887533 3455677 899999999999999999999999999999999999962 6999999999999999
Q ss_pred ccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 528 YDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+++....+..|...|.+++|+ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.+++| +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99998888999999999999995 567888874 88899999999999999999887 8999988 688999999
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.||.|++||+.++. ....+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~---------------- 315 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTL---------------- 315 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEE----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEE----------------
Confidence 99999999999999999888664 47888888 78999999999999999987651 00000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
T Consensus 316 -------------------------------------------------------------------------------- 315 (445)
T 2ovr_B 316 -------------------------------------------------------------------------------- 315 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIA 847 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~ 847 (1134)
.+ | ...+.++.
T Consensus 316 ------------------------------------------------------------------~~--~-~~~v~~~~ 326 (445)
T 2ovr_B 316 ------------------------------------------------------------------TG--H-QSLTSGME 326 (445)
T ss_dssp ------------------------------------------------------------------CC--C-CSCEEEEE
T ss_pred ------------------------------------------------------------------cC--C-cccEEEEE
Confidence 00 3 45566665
Q ss_pred eccCCCEEEEEe-CCeEEEEECCCCeEEEEecC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe---
Q 001160 848 LSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--- 920 (1134)
Q Consensus 848 ~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--- 920 (1134)
+ ++.++++++ ||.|++||+.+++.+..+.+ |...|++++|++ ++|++|+.||.|++||+.+++.+..+
T Consensus 327 ~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 401 (445)
T 2ovr_B 327 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTL 401 (445)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEEC
T ss_pred E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeeeecc
Confidence 5 567888888 89999999999999999886 888999999954 69999999999999999999998888
Q ss_pred --cCcccceEEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001160 921 --KGHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1134)
Q Consensus 921 --~~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1134)
.+|.+.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 402 ~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 578899999999999999999999998 99999976
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=318.86 Aligned_cols=289 Identities=12% Similarity=0.118 Sum_probs=256.1
Q ss_pred EEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC
Q 001160 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 340 ~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
+....|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 33344999999999999998 788999999999999998876653 6689999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCe------
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGR------ 488 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~~------ 488 (1134)
+++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999987665 444 888999999999999 88999888 999999987653
Q ss_pred -----eeEEecCCCC--CeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 489 -----KQYTFEGHEA--PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 489 -----~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.+..+..|.. .+.+++|++++ .+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3445566766 99999998865 8999999999999999998 566778888999999999999999999987
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC--------------eEEEEECCCCeeEEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--------------QIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~ 626 (1134)
. ++.|++||+++++.+..+.. .. .+.+++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 238 ~----d~~i~v~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 238 R----DTNSFLVDVSTLQVLKKYET-DC-PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp T----TSEEEEEETTTCCEEEEEEC-SS-CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred C----CceEEEEECCCCceeeeecC-CC-CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 4 78899999999999988883 33 799999999999999999888 8999999999999999
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..|. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 312 ~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 312 QGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 8764 47999999999999999999999999999876
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=313.41 Aligned_cols=294 Identities=19% Similarity=0.293 Sum_probs=242.7
Q ss_pred ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe-----eeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001160 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 444 ~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
....+|+||.+.|++|+|+|++.. +|+||+.|++|+|||+.+++ +...+.+|...|.+++|+|++ .+|++++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--~~l~s~~ 105 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--QFALSGS 105 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS--SEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC--CEEEEEc
Confidence 344478999999999999998533 89999999999999987643 567889999999999998754 8999999
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE-ecCccCcceEEEEEe
Q 001160 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YSGFRKRSLGVVQFD 597 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~ 597 (1134)
.|+.|++|+............+...+....++++++++++++. ++.+++||......... ..+|.. .+..++|+
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~ 180 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFS 180 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEEC
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEc
Confidence 9999999999998888888888889999999999999999975 78899999987655443 445555 89999998
Q ss_pred CCC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCc
Q 001160 598 TTR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 598 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
+++ ..+++++.|+.|++||+.+++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.+.. .+..
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~----- 252 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYT----- 252 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEE-----
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeee-----
Confidence 875 578889999999999999999999988764 489999999999999999999999999986541 0000
Q ss_pred ccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCC
Q 001160 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1134)
T Consensus 253 -------------------------------------------------------------------------------- 252 (340)
T 4aow_A 253 -------------------------------------------------------------------------------- 252 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCC
Q 001160 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1134)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 835 (1134)
+ .
T Consensus 253 -------------------------------------------~----------------------------------~- 254 (340)
T 4aow_A 253 -------------------------------------------L----------------------------------D- 254 (340)
T ss_dssp -------------------------------------------E----------------------------------E-
T ss_pred -------------------------------------------e----------------------------------c-
Confidence 0 0
Q ss_pred CCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEe---------cCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001160 836 SKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF---------MSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
+ ...+.+++|+|++.+++++.|+.|++||++++..+..+ .+|...|++++|+| ++++||+|+.||.|
T Consensus 255 --~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v 330 (340)
T 4aow_A 255 --G-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLV 330 (340)
T ss_dssp --C-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCE
T ss_pred --C-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEE
Confidence 1 34567777777777766666788888888776665554 35888999999999 89999999999999
Q ss_pred EEEEcCCce
Q 001160 907 QIYNVRVDE 915 (1134)
Q Consensus 907 ~iwd~~~~~ 915 (1134)
+|||+.+|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 999999885
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=327.51 Aligned_cols=300 Identities=12% Similarity=0.134 Sum_probs=253.8
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
....+. |.+.|++++|+| + +|++|+.||.|+|||+.+++..... .....+.+|...|.+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPK-------------DKSYSHFVHKSGLHHVDVL 71 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGG-------------GGEEEEECCTTCEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCC-------------CcceEEecCCCcEEEEEEe
Confidence 344555 999999999999 4 7889999999999999987621110 0011256899999999999
Q ss_pred CC----C---CEEEEEeCCCeEEEEEcCCCCccc--eeeEEecc-----cCCeeEEEEe----cCCCcEE-EEEEcCCCc
Q 001160 418 PD----G---LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAH-----VGGVNDIAFA----HPNKQLC-IVTCGDDKM 478 (1134)
Q Consensus 418 pd----g---~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h-----~~~v~~l~~s----~d~~~~~-l~sg~~d~~ 478 (1134)
|+ | ++|++++.|+.|++||+.+++... ....+..| ...|.+++|+ |+++ + |++++.|+.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~ 149 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGT 149 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSC
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCc
Confidence 99 9 999999999999999999877510 02366778 5899999999 9998 8 999999999
Q ss_pred EEEEECCC------CeeeE-----Ee-------cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-
Q 001160 479 IKVWDVVA------GRKQY-----TF-------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA- 539 (1134)
Q Consensus 479 i~iwd~~~------~~~~~-----~~-------~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~- 539 (1134)
|++||+.+ ++.+. .+ ..|...|.+++|+|+ + ++++++.|+.|++||+++.+....+..
T Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence 99999998 77666 77 448999999999874 4 999999999999999999888888888
Q ss_pred --C---CCcEEEEEECCCCCEEEEEeeCCCCC---CcEEEEeCCCCeeEEEecC-------------ccCcceEEEEEeC
Q 001160 540 --P---GNWCTMMAYSADGTRLFSCGTSKEGE---SHLVEWNESEGAIKRTYSG-------------FRKRSLGVVQFDT 598 (1134)
Q Consensus 540 --~---~~~v~~~~~s~~~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~v~~~~~~~ 598 (1134)
| ...|.+++|+|++++|++++. + +.|++||+++++.+..+.+ |.. .|.+++|+|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~ 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFND 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECS
T ss_pred ccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECC
Confidence 8 889999999999999999885 5 7899999999999999988 666 899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEEEe------CC-------------CCCCCcceEEEccCC----------CEEEE
Q 001160 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVD------AD-------------GGLPASPRLRFNKEG----------SLLAV 649 (1134)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~~~~s~d~----------~~l~~ 649 (1134)
++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 99999999999999999999999999998 44 014589999999998 79999
Q ss_pred EeCCCcEEEEECCCc
Q 001160 650 TTSDNGIKILANSDG 664 (1134)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1134)
++.||.|++|++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=309.47 Aligned_cols=289 Identities=16% Similarity=0.260 Sum_probs=252.7
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+.++..++. |.+.|++++| |+++ +|++|+.||.|++||+.+++.... +..|...|.++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~ 65 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSV 65 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEE
Confidence 346677777 9999999999 8998 688999999999999988765543 55789999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+|+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+.
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecc
Confidence 99999999999999999999999876555555578899999999999 456 799999999999999 788888999
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
.|...|.++++.+. ++.++++++.|+.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||
T Consensus 140 ~~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d 211 (313)
T 3odt_A 140 AHNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVD 211 (313)
T ss_dssp CCSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEE
T ss_pred cCCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEE
Confidence 99999999999873 237999999999999999 3445556665 788999999999998 777764 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+++++.+..+.+|.. .|.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..|.+++|+|+++ +++++.|
T Consensus 212 ~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 212 MHTGDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp TTTCCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETT
T ss_pred CCchhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCC
Confidence 999999999998887 89999999999 68899999999999999999999998764 4799999999998 5679999
Q ss_pred CcEEEEECCCc
Q 001160 654 NGIKILANSDG 664 (1134)
Q Consensus 654 g~i~iw~~~~~ 664 (1134)
|.|++|++.++
T Consensus 287 g~i~iw~~~~~ 297 (313)
T 3odt_A 287 NLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEESCGG
T ss_pred CcEEEEeCCCC
Confidence 99999999887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=322.75 Aligned_cols=282 Identities=16% Similarity=0.257 Sum_probs=245.4
Q ss_pred EEEec-CCCC-eeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 340 VRTLN-QGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 340 ~~~l~-h~~~-V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
...+. |.+. +.++.|+ ++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+
T Consensus 114 ~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~ 171 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYA 171 (464)
T ss_dssp EEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEEC
T ss_pred eEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEc
Confidence 34454 7666 4666664 55 789999999999999999887654 67899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCee------
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRK------ 489 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~------ 489 (1134)
|++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|+.|++||+.++..
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~ 245 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGE 245 (464)
T ss_dssp STT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC-----
T ss_pred CCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccc
Confidence 998 99999999999999999987554 7789999999999995 555 899999999999999987653
Q ss_pred -----------------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001160 490 -----------------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 490 -----------------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+..+.+|...|.++.. + +.++++++.|+.|++||+.+.+....+..|...|.+++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 321 (464)
T 3v7d_B 246 EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321 (464)
T ss_dssp -CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT
T ss_pred cCCcceEeeccCCCeEEEEEccCccceEEEEcC--C--CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC
Confidence 4567889999998853 3 379999999999999999999989999999999999999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
++++++++. ++.|++||+++++.+..+.+|.. .|.+++|+ ++++++++.||.|++||+.++.........
T Consensus 322 ~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~--- 391 (464)
T 3v7d_B 322 RKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT--- 391 (464)
T ss_dssp TTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---
T ss_pred CCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---
Confidence 999999985 78899999999999999999887 89999997 579999999999999999998877666432
Q ss_pred CCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..+..++|++++.++++++ ||.|++||+.++
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 3567889999999999998 899999999887
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=324.29 Aligned_cols=345 Identities=16% Similarity=0.195 Sum_probs=267.4
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..|. ..|.+++|++++ ++++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888755677666 46799999999999999999999999998664 589999999988 999999999999
Q ss_pred EEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccc
Q 001160 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVK 737 (1134)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1134)
+||+.++ +....+.
T Consensus 187 vwd~~~~-~~~~~~~----------------------------------------------------------------- 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVFE----------------------------------------------------------------- 200 (464)
T ss_dssp EEETTTT-EEEEEEC-----------------------------------------------------------------
T ss_pred EEECCCC-cEEEEEC-----------------------------------------------------------------
Confidence 9999876 2222211
Q ss_pred cccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEe--cCCcceEEeeccCeeEEeecccccCCCCCCcccc
Q 001160 738 PRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT--NSGLSLLALASNAVHKLWKWQRTERNPSGKATAN 815 (1134)
Q Consensus 738 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 815 (1134)
+|...|.+++|+ +++.++++++.||.|++||+..............
T Consensus 201 --------------------------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 201 --------------------------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp --------------------------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred --------------------------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 256778899988 5788999999999999999876543222111111
Q ss_pred cCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCC
Q 001160 816 VAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDN 894 (1134)
Q Consensus 816 ~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 894 (1134)
.....+...........+.+ | ...+.++ ++++.++++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~ 322 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRG--H-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ER 322 (464)
T ss_dssp SSEEESCGGGCTTEEEEECC--C-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TT
T ss_pred cceEeeccCCCeEEEEEccC--c-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CC
Confidence 11111111111111122333 6 7777766 68899999999 99999999999999999999999999999999 89
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +.+|++++.|++|++||+.+++.... ....
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~----~~~~----- 391 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS----YHHT----- 391 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE----EECT-----
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee----ecCC-----
Confidence 999999999999999999999999999999999999997 58999999999999999998763221 1111
Q ss_pred cCceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 975 VGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
..+..++|+|+++++++++|+.|++||+ +++.+.... ..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 392 ~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~--~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI--LKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCT--TTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhh--ccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 3467889999999999988999999999 666665433 3458999999997 445566666777665554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.27 Aligned_cols=294 Identities=13% Similarity=0.109 Sum_probs=248.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc--ccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE--RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
|.++|++++|+|+|+ ++++|+.||.|++||+.+++ .+.. +.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCCCCE
Confidence 788999999999998 78899999999999999875 3332 5679999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee---e-EEecCCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---Q-YTFEGHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~-~~~~~h~~ 498 (1134)
|++++.||.|++||+.+++... ...+..|...|.+++|+|+++ +|++++.|+.|++||+..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999998875432 224467999999999999999 899999999999999988763 2 33467899
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEcc------------------CCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYD------------------YLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.|.+++|+|++ .+|++++.|+.|++||+. ..+....+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 99999998854 899999999999999954 4566667778889999999999999999997
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeeE---------------
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNML--------------- 623 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 623 (1134)
. ++.|++||+++++.+..+..|.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 4 78899999999999999998876 89999999999877777 899999999987 4310
Q ss_pred -----------------------EEEeCCCCCCCcceEEEc-cCC---CEEEEEeCCCcEEEEECCCchhhhhh
Q 001160 624 -----------------------TTVDADGGLPASPRLRFN-KEG---SLLAVTTSDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 624 -----------------------~~~~~~~~~~~v~~~~~s-~d~---~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1134)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++.++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~~ 368 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 368 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCTT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhhh
Confidence 1111 2445689999966 677 99999999999999999887555443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=322.34 Aligned_cols=290 Identities=17% Similarity=0.271 Sum_probs=245.0
Q ss_pred CCCCeeEEEEecC---CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC--
Q 001160 345 QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1134)
Q Consensus 345 h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-- 419 (1134)
|.++|++++|+|+ +..++++++.++.|+|||+.+++.+... .......|...|.+++|+|+
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------QSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE--------------EEEECSCTTCCEEEEEEEECTT
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee--------------eeccccCCCCcEEEEEeccCCC
Confidence 8999999999985 4445666666889999999987765321 11112247788999999999
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECCCCeeeEEe---
Q 001160 420 --GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--- 493 (1134)
Q Consensus 420 --g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--- 493 (1134)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++|+.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999887655 6778999999999999 777 8999999999999999999999888
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe----------------------------cCCCCcEE
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----------------------------DAPGNWCT 545 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------------------~~~~~~v~ 545 (1134)
.+|...|.+++|+|++ .+|++++.|+.|++||+++.+....+ ..+...|.
T Consensus 158 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 7899999999998854 89999999999999999876543322 23788999
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--------------EEEecCccCcceEEEEEeCC--CCEEEEEeCC
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--------------KRTYSGFRKRSLGVVQFDTT--RNRFLAAGDE 609 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 609 (1134)
+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .|.+++|+|+ +++|++++.|
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECTT
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEecC
Confidence 99998 778888874 88899999987643 777888776 7999999999 9999999999
Q ss_pred CeEEEEECCCCe----eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 610 FQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 610 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999876 44467766556789999999999999999999999999985
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=330.05 Aligned_cols=314 Identities=13% Similarity=0.196 Sum_probs=252.9
Q ss_pred eeCCCCCCccccCccccceEEEEe-c-CCCCeeEEEEec-CCCeEEEEEeCCCcEEEEEccC---ccccccccceeeccc
Q 001160 320 FAGVAHTPNVYSQDDLTKTVVRTL-N-QGSNVMSMDFHP-QQQTILLVGTNVGDISLWEVGS---RERLAHKPFKVWDIS 393 (1134)
Q Consensus 320 ~s~~g~~~~~~~~~~~~~~~~~~l-~-h~~~V~~v~~sp-dg~~llasg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~ 393 (1134)
|++++..++....-...++++..+ . |.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.....
T Consensus 35 f~~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~--------- 104 (437)
T 3gre_A 35 FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS--------- 104 (437)
T ss_dssp GCCCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC---------
T ss_pred cCCccccccccccccccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce---------
Confidence 456666555443223667788888 5 789999999999 997 789999999999999987 331110
Q ss_pred cccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCCcccee-----eEEe--c--ccCCeeEEE-
Q 001160 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN---PTGELRQH-----LEID--A--HVGGVNDIA- 460 (1134)
Q Consensus 394 ~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~---~~~~~~~~-----~~~~--~--h~~~v~~l~- 460 (1134)
....+|...|.+++|+|++++|++|+.||.|++||+. +++..... ..+. . +...+.++.
T Consensus 105 --------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 105 --------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp --------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred --------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEE
Confidence 0012589999999999999999999999999999995 44433211 1111 1 455677777
Q ss_pred -EecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 461 -FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 461 -~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
+++++. ++++|+.|+.|++||+.+++.+..+.+ |.+.|.+++|+|++ .+|++++.||.|++||+++.+....+
T Consensus 177 ~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~ 252 (437)
T 3gre_A 177 FVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSW 252 (437)
T ss_dssp EECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEE
Confidence 456777 899999999999999999999999988 89999999998864 89999999999999999998777776
Q ss_pred c-CCCCcEEEEEEC----CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc-------------------------c
Q 001160 538 D-APGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF-------------------------R 587 (1134)
Q Consensus 538 ~-~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-------------------------~ 587 (1134)
. .+...|.+++|+ +++.++++++. |+.|++||+++++.+..+.++ +
T Consensus 253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 253 SFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp BCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 5 667799999655 56778888864 888999999999988888755 2
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-----------------------------------CC
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----------------------------------GL 632 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~ 632 (1134)
...|.+++|+ ++++|++++.|+.|++||+.+++....+..+. +.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 2358889999 77899999999999999999998887776531 45
Q ss_pred CCcceEEEccC--CCEEEEEeCCCcEEEEE
Q 001160 633 PASPRLRFNKE--GSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 633 ~~v~~~~~s~d--~~~l~~~~~dg~i~iw~ 660 (1134)
..|.+++|+++ +.+|++|+.||.|+||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 68999999998 78999999999999995
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=319.48 Aligned_cols=289 Identities=15% Similarity=0.208 Sum_probs=242.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeC---CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC--
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTN---VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD-- 419 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd-- 419 (1134)
|.+.|++++|+|+++.++++|+. ||.|+|||+.+++..... ..+|...|.+++|+|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFGATSL 78 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECTTCCT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEcCCCC
Confidence 99999999999999878888887 999999999987754321 2368999999999999
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCC-ccceeeEEecccCCeeEEEE------ecCCCcEEEEEEcCCCcEEEEECCCCe-ee
Q 001160 420 -GLMLGVAFSKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAF------AHPNKQLCIVTCGDDKMIKVWDVVAGR-KQ 490 (1134)
Q Consensus 420 -g~~las~~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~------s~d~~~~~l~sg~~d~~i~iwd~~~~~-~~ 490 (1134)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++||+.+++ .+
T Consensus 79 ~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 79 QQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp TTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSCS
T ss_pred CCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCcc
Confidence 7999999999999999999887 443 67799999999965 67888 89999999999999999987 77
Q ss_pred EEecCCCC----CeEEEEeec--cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECC---CCCEEEEEee
Q 001160 491 YTFEGHEA----PVYSVCPHH--KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA---DGTRLFSCGT 561 (1134)
Q Consensus 491 ~~~~~h~~----~v~~i~~~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~ 561 (1134)
..+..|.+ .|.+++|.+ ..++.++++++.|+.|++||+++.+... ...+...|.+++|+| +++++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 88876655 899988432 2345899999999999999999877643 355778999999999 9999999874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEec-----CccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---------------
Q 001160 562 SKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM--------------- 620 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------- 620 (1134)
++.|++||+++++....+. +|.. .|.+++|+|+++ ++++++.||.|++||+..+
T Consensus 233 ----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~ 307 (357)
T 3i2n_A 233 ----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307 (357)
T ss_dssp ----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred ----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence 7889999999877665554 7766 899999999998 7999999999999999754
Q ss_pred ----eeEEEEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCc
Q 001160 621 ----NMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDG 664 (1134)
Q Consensus 621 ----~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~ 664 (1134)
+.+..+..| ...|.+++|+|++++|+ +++.||.|++||+.+.
T Consensus 308 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 345566655 45899999999999998 7999999999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=331.35 Aligned_cols=292 Identities=16% Similarity=0.212 Sum_probs=234.6
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~l 423 (1134)
|...|+|++|+|.+..+||+|+.||.|+|||+.+++..... .+.+|.+.|++++|+| ++++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTTEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCCEE
Confidence 77899999999966558999999999999999877643210 1468999999999998 78999
Q ss_pred EEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
++|+.||+|++||++++. .........+...+.+++|+|++. +|++|+.|+.|++||+. ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 999999999999998753 222212223445688999999999 89999999999999975 56678899999999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
+|+|.++ .++++++.|++|++||+++.+... ....|...|++++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9998753 589999999999999998766543 33567889999999999999999985 788999999999888
Q ss_pred EEecCccCc-----ceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceE-EEcc
Q 001160 581 RTYSGFRKR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRL-RFNK 642 (1134)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~ 642 (1134)
..+..|... .+....|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777665421 123456777777776654 34679999999999988875432 3467776 6999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001160 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|.+|++|+ |+.|+||+++++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999999876 789999999887
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=316.66 Aligned_cols=315 Identities=15% Similarity=0.204 Sum_probs=251.8
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEE
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTR-NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLA 648 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~ 648 (1134)
+|+....+....+.+|.. .|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 445566777888888887 89999999999 999999999999999999998888887655667899999999 789999
Q ss_pred EEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCC
Q 001160 649 VTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTI 728 (1134)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1134)
+++.|+.|++||+.+. . ...+.
T Consensus 136 s~~~d~~i~iwd~~~~-~-~~~~~-------------------------------------------------------- 157 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS-V-IQVFA-------------------------------------------------------- 157 (383)
T ss_dssp EEETTTEEEEEETTSC-E-EEEEE--------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC-c-eEEEe--------------------------------------------------------
Confidence 9999999999998632 0 00000
Q ss_pred CcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCC
Q 001160 729 DGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1134)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~ 808 (1134)
.
T Consensus 158 -------------------------------------------------------------~------------------ 158 (383)
T 3ei3_B 158 -------------------------------------------------------------K------------------ 158 (383)
T ss_dssp -------------------------------------------------------------C------------------
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred CCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEE
Q 001160 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFL 887 (1134)
Q Consensus 809 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 887 (1134)
. ..| ...|.+++|+|++++|++++ |+.|++||+ +++.+..+.+|...|.++
T Consensus 159 ------------------------~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~ 210 (383)
T 3ei3_B 159 ------------------------T--DSW-DYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHA 210 (383)
T ss_dssp ------------------------C--CCS-SCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEE
T ss_pred ------------------------c--CCC-CCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEE
Confidence 0 003 67799999999999999999 899999999 578889999999999999
Q ss_pred EEcCCCCc-EEEEEeCCCcEEEEEcCC----ceEEEEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccc
Q 001160 888 AFHPQDNN-IIAIGMEDSSVQIYNVRV----DEVKTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 888 ~~s~~~~~-~lasg~~dg~i~iwd~~~----~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~ 961 (1134)
+|+| +++ +|++|+.|+.|++||+.+ ++++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++....
T Consensus 211 ~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 211 EFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999 777 999999999999999998 6677666 6999999999999 999999999999999999998875432
Q ss_pred eeeecC--CCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001160 962 RFIQAP--AGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 962 ~~~~~~--~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
...... ..+. ..+. +.|+|+ ..+..++|+|||++ +++.||
T Consensus 289 ~~~~~~~~~~~~---~~~~-~~~~p~--------------------------------~~~~~~~~s~dg~~--s~s~d~ 330 (383)
T 3ei3_B 289 IIIHPHRQFQHL---TPIK-ATWHPM--------------------------------YDLIVAGRYPDDQL--LLNDKR 330 (383)
T ss_dssp EEECCBCCCTTS---CCCC-CEECSS--------------------------------SSEEEEECBCCTTT--CTTCCC
T ss_pred cccccccccccc---cceE-EeccCC--------------------------------CCceEEEecCCccc--ccCCCC
Confidence 221110 0111 1111 244443 34566788999998 899999
Q ss_pred cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.|++||+.+++.+..+..+. +.....+++|+| ++++|++|+ ||.|++|++.+
T Consensus 331 ~i~iwd~~~~~~~~~l~~~~--------~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 331 TIDIYDANSGGLVHQLRDPN--------AAGIISLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEETTTCCEEEEECBTT--------BCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEecCCCceeeeecCCC--------CCceEEEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 99999999999998886431 223334569999 789999997 99999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=316.48 Aligned_cols=300 Identities=11% Similarity=0.092 Sum_probs=231.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCC-------CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNV-------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
.-+|+|++|+|||+ +||+|+.| +.|++|++..+.......+. ......+.+|...|.+++++
T Consensus 14 g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~- 82 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS- 82 (365)
T ss_dssp SSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE-
T ss_pred CCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC-
Confidence 45899999999997 78888653 35999999876543211110 01112367788899988774
Q ss_pred CCCEEEEE-----------eCCCeEEEEEcCCCCccc-eeeE-----EecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 419 DGLMLGVA-----------FSKHIVHLYTYNPTGELR-QHLE-----IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 419 dg~~las~-----------~~dg~i~iwd~~~~~~~~-~~~~-----~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
++.+++| +.|+.+++|++.+..... .... ...+...+.+++|+|||+.+.+++++.|++|+|
T Consensus 83 -~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 83 -KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp -TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred -CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 5566665 357789999987654321 1111 123455689999999999655567778999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE--ecCCCCcEEEEEECCCCCEEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--YDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
||+.+++++..+. |.+.|.+++|+|++ .++++++.+ .+++|+..+++.... ...+...|.+++|+|++++++++
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 9999999998886 78889999998854 899988855 566677666665543 34567789999999999999999
Q ss_pred eeCCCCCCcEEEEeCCCCee----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEE-eCCCCCCC
Q 001160 560 GTSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTV-DADGGLPA 634 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 634 (1134)
+.++.....+++|+...+.. ...+.+|.. .|.+++|+|+|++|++|+.|+.|+|||+.+++++..+ .+| ...
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~ 314 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA 314 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence 87655455788999876653 345667766 8999999999999999999999999999999998876 455 458
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|++++|+|||++||+++.|++|+||++..+
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=318.09 Aligned_cols=298 Identities=14% Similarity=0.151 Sum_probs=250.9
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC------ceeEecCCCCcEEEEEECCC----C---CEE
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------SRVDYDAPGNWCTMMAYSAD----G---TRL 556 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----~---~~l 556 (1134)
...+.+|.+.|++++|+| .+|++++.||.|++||+.+.+ ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999976 699999999999999999887 67788899999999999999 9 999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCee-----EEEecCcc----CcceEEEEEe----CCCCE-EEEEeCCCeEEEEECCC---
Q 001160 557 FSCGTSKEGESHLVEWNESEGAI-----KRTYSGFR----KRSLGVVQFD----TTRNR-FLAAGDEFQIKFWDMDN--- 619 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~-----~~~~~~~~----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 619 (1134)
++++. ++.|++||+.+++. +..+..|. ...|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99875 78899999998887 88888884 3389999999 99999 99999999999999998
Q ss_pred ---CeeEE-----EEeC-----CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCC
Q 001160 620 ---MNMLT-----TVDA-----DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1134)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1134)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++ +....+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~------------ 226 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQ------------ 226 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECC------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEecc------------
Confidence 66655 6644 3445689999999999 9999999999999998754 111000000
Q ss_pred CCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeec
Q 001160 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1134)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1134)
T Consensus 227 -------------------------------------------------------------------------------- 226 (397)
T 1sq9_A 227 -------------------------------------------------------------------------------- 226 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEE
Q 001160 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1134)
..| .. . ...|.++
T Consensus 227 --~~h-------------------------------------------------------------~~---~-~~~i~~i 239 (397)
T 1sq9_A 227 --HSM-------------------------------------------------------------IN---N-SNSIRSV 239 (397)
T ss_dssp --C----------------------------------------------------------------C---C-CCCEEEE
T ss_pred --ccc-------------------------------------------------------------cc---c-CCccceE
Confidence 000 00 1 4568889
Q ss_pred EeccCCCEEEEEe-C---CeEEEEECCCCeEEEEecC-------------CCCceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 001160 847 ALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMS-------------PPPAATFLAFHPQDNNIIAIGMEDSSVQIY 909 (1134)
Q Consensus 847 ~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~~lasg~~dg~i~iw 909 (1134)
+|+|++++|++++ | |.|++||+.+++.+..+.+ |...|.+++|+| ++++|++++.||.|++|
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 9999999999888 7 8999999999999999988 999999999999 89999999999999999
Q ss_pred EcCCceEEEEec------Cc---------------ccceEEEEEecCC----------CEEEEEcCCCcEEEEeCCCcc
Q 001160 910 NVRVDEVKTKLK------GH---------------QNRITGLAFSPTL----------NALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 910 d~~~~~~~~~l~------~h---------------~~~i~~l~~s~d~----------~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
|+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|++.+++
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999999999999 88 9999999999998 799999999999999998763
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=309.02 Aligned_cols=302 Identities=13% Similarity=0.157 Sum_probs=251.1
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
.+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987665 7789999999999999999 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCc-----------eeEecCCCC--cE
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGS-----------RVDYDAPGN--WC 544 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~-----------~~~~~~~~~--~v 544 (1134)
|+.+++.+..+. |...|.+++|+|++ .++++++.+ +.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSPCG--NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECTTS--SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEccCC--CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999998887 88999999998865 899999999 9999999987643 233444444 89
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
.+++|+|+++++++++. ++.|++||+++ ++.+..+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 99999999999999874 78899999998 788889988877 8999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccc
Q 001160 624 TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVS 703 (1134)
Q Consensus 624 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1134)
..+... ..+.+++|+|+++++++++.++...+|......
T Consensus 254 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------------------------- 292 (369)
T 3zwl_B 254 KKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANE-------------------------------------- 292 (369)
T ss_dssp EEEECS---SCEEEEEECSSSSEEEEEECCC-------------------------------------------------
T ss_pred eeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCC--------------------------------------
Confidence 888733 468999999999999999999866665443220
Q ss_pred cccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC
Q 001160 704 AAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS 783 (1134)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 783 (1134)
....+++|+........ . + .+|...|.+++|+|+
T Consensus 293 ---------------------------------------~~~~i~~~d~~~~~~~~---~--~--~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 293 ---------------------------------------GKFEARFYHKIFEEEIG---R--V--QGHFGPLNTVAISPQ 326 (369)
T ss_dssp -----------------------------------------CEEEEEETTTCCEEE---E--E--ECCSSCEEEEEECTT
T ss_pred ---------------------------------------CcceeEEEecCCCcchh---h--e--ecccCcEEEEEECCC
Confidence 01245666655432111 1 1 237788999999999
Q ss_pred CcceEEeeccCeeEEeecccc
Q 001160 784 GLSLLALASNAVHKLWKWQRT 804 (1134)
Q Consensus 784 g~~l~~~~~dg~v~vw~~~~~ 804 (1134)
+++|++++.||.|++|++...
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEcCCCeEEEEECccc
Confidence 999999999999999998653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=327.26 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=226.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
+.++|++++|+|+|+ +|++|+.||.|+|||+.++ +.+.. +.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCCCE
Confidence 567999999999998 7889999999999999987 44332 6789999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe---eeEEecC-CCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR---KQYTFEG-HEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~---~~~~~~~-h~~ 498 (1134)
|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++ +|++|+.|+.|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773444446778999999999999999 79999999999999999887 4778888 999
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCC------------------CceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL------------------GSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.|.+++|+|++ .+|++++.|+.|++||+... +....+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 99999998854 89999999999999998532 233344 7888999999999999999997
Q ss_pred eCCCCCCcEEEEeCCCCee----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------------
Q 001160 561 TSKEGESHLVEWNESEGAI----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN--------------- 621 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1134)
. ++.|++||+.+++. +..+.+|.. .|.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 4 78899999999887 788888877 89999999999999888877666 66654211
Q ss_pred ------------------------eEEEEeC-----------CCCCCCcceEEEccC-CC---EEEEEeCCCcEEEEEC
Q 001160 622 ------------------------MLTTVDA-----------DGGLPASPRLRFNKE-GS---LLAVTTSDNGIKILAN 661 (1134)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~v~~~~~s~d-~~---~l~~~~~dg~i~iw~~ 661 (1134)
....... ..|...|.++++.++ +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 014567889987653 33 6999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=313.37 Aligned_cols=287 Identities=16% Similarity=0.251 Sum_probs=240.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.+.+++|++ ..+ ++++.||.|++||+.+++.... ....|...|.+++|+|++++|++|+
T Consensus 95 ~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 95 YLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp TCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCCEEEEEC
Confidence 355566665 334 4567899999999999876542 1223889999999999999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC-CCeeeEEecCCCCCeEEEEee
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV-AGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987665 677999999999994 45 89999999999999998 567788899999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
|+ +.+|++++.|+.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 SD--GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp TT--SSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred CC--CCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 85 489999999999999999998888888899999999999998866555431 124788999999999999888744
Q ss_pred cCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 587 RKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. .+.+++|+|+++++++++ .||.|++||+.+++.........+...|.+++|+|+|++|++++.||.|++|++.++
T Consensus 304 ~--~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 304 S--QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp S--CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred C--cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 3 799999999999999954 899999999999776666543444568999999999999999999999999999988
Q ss_pred hhh
Q 001160 665 VRL 667 (1134)
Q Consensus 665 ~~~ 667 (1134)
...
T Consensus 382 ~~~ 384 (401)
T 4aez_A 382 DHV 384 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=321.17 Aligned_cols=348 Identities=14% Similarity=0.165 Sum_probs=242.4
Q ss_pred CcEEEEeCCCCeeEEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeC-----------CCCCCC
Q 001160 567 SHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDA-----------DGGLPA 634 (1134)
Q Consensus 567 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~ 634 (1134)
..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+...
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred CcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 4477888888888888888887 999999999 999999999999999999998765544431 124568
Q ss_pred cceEEEcc-CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCC
Q 001160 635 SPRLRFNK-EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERP 713 (1134)
Q Consensus 635 v~~~~~s~-d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1134)
|.+++|+| ++.+|++++.||.|++||+.++. ....
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~------------------------------------------- 137 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADV------------------------------------------- 137 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTE-EEEE-------------------------------------------
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-ccee-------------------------------------------
Confidence 99999999 78899999999999999987651 0000
Q ss_pred CCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc
Q 001160 714 DRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN 793 (1134)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 793 (1134)
T Consensus 138 -------------------------------------------------------------------------------- 137 (408)
T 4a11_B 138 -------------------------------------------------------------------------------- 137 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc---CCCEEEEEe-CCeEEEEECC
Q 001160 794 AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK---NDSYVMSAS-GGKVSLFNMM 869 (1134)
Q Consensus 794 g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~ 869 (1134)
+. + ...+.++++++ ++.++++++ +|.|++||+.
T Consensus 138 -----~~-------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 138 -----FN-------------------------------------F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp -----EE-------------------------------------C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred -----cc-------------------------------------C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 00 1 34455666666 455888888 8999999999
Q ss_pred CCeEEEEecCCCCceEEEEEcCCCCc-EEEEEeCCCcEEEEEcCCce-EEEEe---------------cCcccceEEEEE
Q 001160 870 TFKVMTMFMSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYNVRVDE-VKTKL---------------KGHQNRITGLAF 932 (1134)
Q Consensus 870 ~~~~~~~~~~~~~~i~~l~~s~~~~~-~lasg~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~i~~l~~ 932 (1134)
+++.+..+.+|...|++++|+| +++ +|++|+.||.|++||+.+++ .+..+ .+|...|.+++|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred CcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 9999999999999999999999 666 69999999999999998765 34444 578999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccC
Q 001160 933 SPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWS 1011 (1134)
Q Consensus 933 s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~ 1011 (1134)
+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++.++.|++||+ ++..+..+
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~- 330 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML- 330 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-
Confidence 999999999999999999999988753322111111111 01222333444556666689999999999 66666655
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC
Q 001160 1012 PKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD 1091 (1134)
Q Consensus 1012 ~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D 1091 (1134)
.+|...|++++|+||+++|++++.||.|++||+.+++.+....... ....+.+.....+.+.+.|
T Consensus 331 --~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 395 (408)
T 4a11_B 331 --KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEE 395 (408)
T ss_dssp --CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred --ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCcc
Confidence 4568999999999999999999999999999999998876554221 1122333344567778889
Q ss_pred CcEEEEecCC
Q 001160 1092 GAVHVVEPSD 1101 (1134)
Q Consensus 1092 g~v~vW~~~~ 1101 (1134)
+.+++|+...
T Consensus 396 ~~~~~W~~~~ 405 (408)
T 4a11_B 396 GGTSAWSHPQ 405 (408)
T ss_dssp ----------
T ss_pred CceeecCCcc
Confidence 9999998754
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=299.70 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=213.8
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~i 481 (1134)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975321 223378899999999999864 77 8999999999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCC-----
Q 001160 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSAD----- 552 (1134)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~----- 552 (1134)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999999975568999999999999999987642 4567788899999999997
Q ss_pred --------CCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEEC
Q 001160 553 --------GTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 553 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~ 617 (1134)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||+
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 568999875 7889999998765 6678888887 89999999985 78999999999999999
Q ss_pred CCCe--e-EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 618 DNMN--M-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 618 ~~~~--~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
.+.. . ...+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8743 1 2223223445679999999999999999999999999975
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-32 Score=333.46 Aligned_cols=208 Identities=22% Similarity=0.317 Sum_probs=183.2
Q ss_pred eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-----CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-----GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG 521 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~ 521 (1134)
..+.+|.+.|++++|++++.. +|+||+.|++|++||+.+ +.....+.+|...|.+++|++++ .+|++|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g--~~l~sgs~Dg 452 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG--QFALSGSWDG 452 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC--CEEEEEeCCC
Confidence 467899999999999998654 899999999999999875 34567889999999999998754 8999999999
Q ss_pred eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe---cCccCcceEEEEEeC
Q 001160 522 KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY---SGFRKRSLGVVQFDT 598 (1134)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~~~~v~~~~~~~ 598 (1134)
+|++||+.++.....+..|...|.+++|+|++++|++++. |++|++||.......... .+|.. .|.+++|+|
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~ 527 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRD-WVSCVRFSP 527 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSS-CEEEEEECS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCC-cEEEEEEeC
Confidence 9999999999888899999999999999999999999985 788999998765443332 34554 799999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 599 TR--NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 599 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++ ..+++++.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 87 689999999999999999999998888764 47999999999999999999999999998766
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=310.46 Aligned_cols=282 Identities=15% Similarity=0.255 Sum_probs=242.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.++.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++++|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 57789999875 678776 999999999999865421 1457888999999999999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeEEecCCCCCeEEEEee
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||.|++||+.+++.+. .+.+|...+.+++++ +. ++++|+.|+.+++||... ...+..+.+|...+..+.++
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987665 778999999988875 45 899999999999999886 44567889999999999998
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEE-EEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF-SCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+.+ .++++++.|+.+++|+....+. ......+...|.+++|+|++..++ +++. ..|+.|++||+.+++...
T Consensus 240 ~~g--~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred CCC--CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 765 8999999999999999987653 346677888999999999776554 4432 347899999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 688899999999998865 79999999999999999998764 489999999999999999999999999
Q ss_pred ECCCc
Q 001160 660 ANSDG 664 (1134)
Q Consensus 660 ~~~~~ 664 (1134)
|+.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98765
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=323.70 Aligned_cols=300 Identities=16% Similarity=0.207 Sum_probs=227.3
Q ss_pred EEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEE
Q 001160 581 RTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKI 658 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 658 (1134)
.....|.. .|++++|+| +++.|++|+.||.|++||+.+++....+...+|...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34444555 799999999 45789999999999999999887777676666677899999998 7899999999999999
Q ss_pred EECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccc
Q 001160 659 LANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKP 738 (1134)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1134)
||+.++. . ..
T Consensus 192 wd~~~~~-~-~~-------------------------------------------------------------------- 201 (435)
T 4e54_B 192 QDFKGNI-L-RV-------------------------------------------------------------------- 201 (435)
T ss_dssp EETTSCE-E-EE--------------------------------------------------------------------
T ss_pred eeccCCc-e-eE--------------------------------------------------------------------
Confidence 9986430 0 00
Q ss_pred ccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCc
Q 001160 739 RVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAP 818 (1134)
Q Consensus 739 ~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 818 (1134)
+.. .
T Consensus 202 -------------------------------------------------~~~-~-------------------------- 205 (435)
T 4e54_B 202 -------------------------------------------------FAS-S-------------------------- 205 (435)
T ss_dssp -------------------------------------------------EEC-C--------------------------
T ss_pred -------------------------------------------------Eec-c--------------------------
Confidence 000 0
Q ss_pred ccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEE
Q 001160 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897 (1134)
Q Consensus 819 ~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l 897 (1134)
..+ ...+.+++|+|++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|
T Consensus 206 -----------------~~~-~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 206 -----------------DTI-NIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL 266 (435)
T ss_dssp -----------------SSC-SCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred -----------------CCC-CccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence 002 44567789999999999998 8999999986 456678889999999999999555689
Q ss_pred EEEeCCCcEEEEEcCCceEEEE---ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC
Q 001160 898 AIGMEDSSVQIYNVRVDEVKTK---LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974 (1134)
Q Consensus 898 asg~~dg~i~iwd~~~~~~~~~---l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~ 974 (1134)
++|+.|+.|+|||+.+++.... ..+|...|++++|+||+++|++++.|++|++||+.+++........... ....
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~--~~~~ 344 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR--HFQH 344 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC--CCSS
T ss_pred EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc--cccc
Confidence 9999999999999988764433 4679999999999999999999999999999999988754332111110 0001
Q ss_pred cCceEEEECCCCcEEEEE-------------ECCeEEEEeC-CCcceeccCCCCCCCCCeEEE-EEccCCCEEEEEecCC
Q 001160 975 VGETKVQFHNDQTHLLVV-------------HESQISVYDS-KLECSRSWSPKDALPAPISSA-IYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 975 ~~v~~~~fspdg~~l~~~-------------~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~~~~~dg 1039 (1134)
..+..+.|+|++..++++ .++.|++||. +++.+..+. .+|...|.++ +|+|||++|++|+ |+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--~~~~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--DPESSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--CSSCCCCCCEEEECTTSSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--CCCCCcEEEEEEECCCCCEEEEEc-CC
Confidence 223455667776666653 2357999999 666665543 3457888887 6999999999876 88
Q ss_pred cEEEEeCCCcce
Q 001160 1040 AIGVFDAETLRF 1051 (1134)
Q Consensus 1040 ~I~vwd~~~~~~ 1051 (1134)
.|+||++++|+.
T Consensus 422 ~i~iW~~~~gk~ 433 (435)
T 4e54_B 422 HILIWSQQEART 433 (435)
T ss_dssp EEEECCCC----
T ss_pred cEEEEECCcCee
Confidence 999999998864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=312.25 Aligned_cols=314 Identities=11% Similarity=0.049 Sum_probs=243.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 46899999999998 799999999999 6444432 35799999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC-----Ce
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA-----PV 500 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~-----~v 500 (1134)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .||+++.||.|++||.+. ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 4555555554432222 22 4688999999999999 899999999999999543 667777 766 49
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCc-------eeEe----cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS-------RVDY----DAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
.+++|+|++ ++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSPDG--~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNPIE--SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECSSS--SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcCCC--CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 999998855 9999999999999999998753 3444 5667899999999999 666653 7889
Q ss_pred EEEeCCCCee---EEEec-CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE--ccC
Q 001160 570 VEWNESEGAI---KRTYS-GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF--NKE 643 (1134)
Q Consensus 570 ~~wd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~d 643 (1134)
++||+.++.. .+++. +|.. .|.+++|+ |+.+++++ ++.|++||+.+++......+ +...+..++| +||
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~-~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d 278 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRR-KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKE 278 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSS-CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSS
T ss_pred EEEECCCCccccceeeecccccC-cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCC
Confidence 9999988773 35664 5554 89999999 68899887 69999999998877544434 4568999999 999
Q ss_pred CCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccC
Q 001160 644 GSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSIS 723 (1134)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1134)
+..+++++.+|+ ++|....-
T Consensus 279 ~~~La~a~edG~-klw~~d~~----------------------------------------------------------- 298 (588)
T 2j04_A 279 STILLMSNKTSY-KVLLEDEL----------------------------------------------------------- 298 (588)
T ss_dssp CEEEEECSSCEE-EEEESSSE-----------------------------------------------------------
T ss_pred CCEEEEEcCCCC-EEEeeccE-----------------------------------------------------------
Confidence 999999999999 99987511
Q ss_pred ccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec
Q 001160 724 SLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS 792 (1134)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 792 (1134)
.+.+++..++. .|+++++|+...... . . -.+...|.+++|||||+.+++++.
T Consensus 299 -------~~spd~~l~a~-~d~~v~lW~~~g~~l----~---~--~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 299 -------HVTADNIIAPY-LEKKFKKWSTIWNEF----N---N--YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -------EEECCCSSHHH-HHHHHHHTTTTTTSS----S---S--SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -------EECCCceEEEE-cCCEEEEEECCCCce----e---e--eccceEEEEEEECCCCCEEEEEEe
Confidence 12334444444 389999999854321 1 1 113566899999999998887764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=310.11 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=213.3
Q ss_pred ccccCCcCeEEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCccceeeEEe--cccCCeeEEEEecC----CCcEEEEE
Q 001160 403 LLNDAAISVNRCVWGPD----GLMLGVAFSKHIVHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHP----NKQLCIVT 472 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d----~~~~~l~s 472 (1134)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 35689999999999984 4567777777799999999887665443332 26688999999999 55 8999
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCcEEEEEE
Q 001160 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAY 549 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 549 (1134)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999883 3389999999999999999988887777 678899999999
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC----------------------------ccCcceEEEEEeCCCC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG----------------------------FRKRSLGVVQFDTTRN 601 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~ 601 (1134)
+|+++++++++. ++.|++||+++++....+.. |.. .|.+++|+ ++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~--~~ 242 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN-YVDCVRWL--GD 242 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS-CCCEEEEE--TT
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc-eEEEEEEc--CC
Confidence 999999999985 78899999998765544433 555 89999999 77
Q ss_pred EEEEEeCCCeEEEEECCCCee--------------EEEEeCCCCCCCcceEEEccC--CCEEEEEeCCCcEEEEECCCc
Q 001160 602 RFLAAGDEFQIKFWDMDNMNM--------------LTTVDADGGLPASPRLRFNKE--GSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 602 ~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++++.|+.|++||+.++.. +..+..+. ..|.+++|+|+ +++|++++.||.|++||+.++
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 999999999999999987644 66666553 47999999999 999999999999999999876
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=317.82 Aligned_cols=319 Identities=10% Similarity=0.117 Sum_probs=251.2
Q ss_pred ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 452 h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
....|.+++|+|||+ ++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+ .
T Consensus 14 ~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~---~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFEL---A 74 (588)
T ss_dssp CSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSC---C
T ss_pred hhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEe---C
Confidence 457899999999999 899999999999 76666544 7999999999998854 455544444 4
Q ss_pred CceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEE
Q 001160 532 GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 532 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~ 606 (1134)
+....+. .+...|.+++|||+|++|++++. ++.+++||... ++..+. |.. ..+.+++|+|||++|++|
T Consensus 75 ~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~----dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 75 QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN----NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp CSSCSSTTSCSCCEEEEEECSSSSCEEEEET----TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCceEeecCCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 4333333 34778999999999999999985 78899999544 666666 553 259999999999999999
Q ss_pred eCCCeEEEEECCCCee-------EEEEeCC--CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCccc
Q 001160 607 GDEFQIKFWDMDNMNM-------LTTVDAD--GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~-------~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 677 (1134)
+.||+|++||+.++.. +.++..+ ++...|.+++|+||| +++++.|++|++|++.++.. . .
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~-~-~------- 216 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH-Q-P------- 216 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS-C-C-------
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc-c-c-------
Confidence 9999999999998753 5666322 345689999999999 88889999999999866510 0 0
Q ss_pred ccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCC
Q 001160 678 KNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISD 757 (1134)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~ 757 (1134)
T Consensus 217 -------------------------------------------------------------------------------- 216 (588)
T 2j04_A 217 -------------------------------------------------------------------------------- 216 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCcccccc-CCC
Q 001160 758 PSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDI-NES 836 (1134)
Q Consensus 758 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~ 836 (1134)
..+. + .+
T Consensus 217 --~~~t---------------------------------------------------------------------L~~~- 224 (588)
T 2j04_A 217 --VSRM---------------------------------------------------------------------IQNA- 224 (588)
T ss_dssp --CEEE---------------------------------------------------------------------EECC-
T ss_pred --ceee---------------------------------------------------------------------eccc-
Confidence 0000 0 01
Q ss_pred CCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEE--cCCCCcEEEEEeCCCcEEEEEcCCc
Q 001160 837 KPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAF--HPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 837 ~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
| ...|.+++|+ |+.||++++++|++||+.+++......+|...|..++| +| ++..|++++.||+ ++|..+
T Consensus 225 -h-~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 225 -S-RRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp -C-SSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS--
T ss_pred -c-cCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec--
Confidence 4 6778899999 68999999999999999988875555489999999999 99 8999999999999 999987
Q ss_pred eEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE
Q 001160 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1134)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1134)
.++++||+..+++. |+++++|+...+.. ....+ . ..|.+++|||||+.+|++.
T Consensus 297 --------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l------~~~~~-~---~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 297 --------------ELHVTADNIIAPYL--EKKFKKWSTIWNEF------NNYET-T---LVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------SEEEECCCSSHHHH--HHHHHHTTTTTTSS------SSSCC-E---EEEEEEEECTTSSEEEEEE
T ss_pred --------------cEEECCCceEEEEc--CCEEEEEECCCCce------eeecc-c---eEEEEEEECCCCCEEEEEE
Confidence 26699999988775 99999999866541 12222 1 4689999999999999854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-32 Score=294.64 Aligned_cols=246 Identities=14% Similarity=0.213 Sum_probs=206.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEEcCC--C
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g 420 (1134)
|.+.|++++|+|+|+ +||+|+.||+|+|||+.++ +.+. .+.+|.+.|.+++|+|+ |
T Consensus 8 h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~~~g 67 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (297)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCGGGC
T ss_pred CcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCCCcC
Confidence 889999999999998 7899999999999999754 2222 26789999999999874 8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--eeEEecCC
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--KQYTFEGH 496 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~--~~~~~~~h 496 (1134)
++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 68 TILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp SEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 99999999999999999876422 22366789999999999998 77 89999999999999998763 24577899
Q ss_pred CCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCC----ceeEecCCCCcEEEEEECCCC---CEEEE
Q 001160 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLG----SRVDYDAPGNWCTMMAYSADG---TRLFS 558 (1134)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~---~~l~~ 558 (1134)
...|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+.+|...|.+++|+|++ .+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999999999863 24799999999999999998766 345678899999999999995 78888
Q ss_pred EeeCCCCCCcEEEEeCCCCe---eEEEe--cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001160 559 CGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
++. |+.|++||++++. ....+ ..+.. .|.+++|+|++++|++++.|+.|++|+..
T Consensus 225 ~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 874 8889999998643 12233 34444 89999999999999999999999999976
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=306.12 Aligned_cols=294 Identities=12% Similarity=0.139 Sum_probs=214.0
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCC-------cEEEEECCCCee----------eEEecCCCCCeEEEEeeccCCccEEE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCGDDK-------MIKVWDVVAGRK----------QYTFEGHEAPVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~i~~~~~~~~~~l~ 515 (1134)
..||++++|+||++ +|++|+.|. .|++|++..+.. ...+.+|...|.++++.. ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~----~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK----GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET----TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC----CEEE
Confidence 45899999999999 899987543 599999876532 124667888888887643 5677
Q ss_pred EEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee----EEEecC----cc
Q 001160 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI----KRTYSG----FR 587 (1134)
Q Consensus 516 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~----~~~~~~----~~ 587 (1134)
+++.++..++|... .++.+++|++.+... ...... ..
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66554443333211 123344444332211 111110 11
Q ss_pred CcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCch
Q 001160 588 KRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
+..+.+++|+|||+++++++ .|++|++||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 22578899999999987654 7899999999999999888633 369999999999999998865 56666655441
Q ss_pred hhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccC
Q 001160 666 RLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVD 745 (1134)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1134)
.....
T Consensus 209 ~~~~~--------------------------------------------------------------------------- 213 (365)
T 4h5i_A 209 CIARK--------------------------------------------------------------------------- 213 (365)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeee---------------------------------------------------------------------------
Confidence 00000
Q ss_pred ccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCC
Q 001160 746 KIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS 825 (1134)
Q Consensus 746 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 825 (1134)
.
T Consensus 214 -------------------~------------------------------------------------------------ 214 (365)
T 4h5i_A 214 -------------------T------------------------------------------------------------ 214 (365)
T ss_dssp -------------------C------------------------------------------------------------
T ss_pred -------------------e------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CC----eEEEEECCCCeE----EEEecCCCCceEEEEEcCCCCcE
Q 001160 826 GTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GG----KVSLFNMMTFKV----MTMFMSPPPAATFLAFHPQDNNI 896 (1134)
Q Consensus 826 ~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~ 896 (1134)
.. .| ...+.+++|+||++++++++ ++ .+++|++..... ...+.+|...|++++||| ++++
T Consensus 215 -------~~--~~-~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~ 283 (365)
T 4h5i_A 215 -------DF--DK-NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGEL 283 (365)
T ss_dssp -------CC--CT-TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCE
T ss_pred -------cC--CC-CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCc
Confidence 00 04 55677777777777777776 44 477777766543 356778999999999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001160 897 IAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 897 lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
||+|+.|++|+|||+.+++++..+ .+|.+.|++|+|||||++|||+|.|++|+|||+...
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999875 799999999999999999999999999999999653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=303.36 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=217.2
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|.++|.+++|+|++++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113337789999999999999999 899999999999999
Q ss_pred CCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEE
Q 001160 484 VVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 484 ~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+.+++.... +..|...|.+++|++++ .+|++++.|+.|++||++.... ......|...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 46799999999998754 8999999999999999998774 223356788999999999999999
Q ss_pred EEeeCCCCCCcEEEEeC------------------CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 558 SCGTSKEGESHLVEWNE------------------SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
+++. ++.|++||+ ..++.+..+..|.. .+.+++|+|++++|++++.|+.|++||+.+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 9874 788999995 46788888888877 899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 234 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 KMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999998664 479999999999988877 999999999977
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=310.99 Aligned_cols=365 Identities=13% Similarity=0.183 Sum_probs=253.8
Q ss_pred CCCcEEEEECCCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEccCCCceeEec-------------CC
Q 001160 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-------------AP 540 (1134)
Q Consensus 475 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------~~ 540 (1134)
.++.+++|++..++....+.+|.+.|.+++|+| ++ .+|++++.||.|++||+.+......+. .|
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG--RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC--CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCC--CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 355678899888888889999999999999988 54 899999999999999999876655432 58
Q ss_pred CCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEE
Q 001160 541 GNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 541 ~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd 616 (1134)
...|.+++|+| ++.++++++. ++.|++||+.+++.+..+... . .+.++.+++.+ .++++++.|+.|++||
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSF----DKTLKVWDTNTLQTADVFNFE-E-TVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEET----TSEEEEEETTTTEEEEEEECS-S-CEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeC----CCeEEEeeCCCCccceeccCC-C-ceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 88999999999 7778888874 788999999999998888743 3 78899999854 4999999999999999
Q ss_pred CCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccc
Q 001160 617 MDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINA 695 (1134)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1134)
+.+++.+..+..+. ..|.+++|+|++. ++++++.||.|++||+.++......+..+......
T Consensus 173 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------- 235 (408)
T 4a11_B 173 LKSGSCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ--------------- 235 (408)
T ss_dssp SSSSCCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC---------------
T ss_pred CCCcceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce---------------
Confidence 99999998888664 4799999999998 58999999999999998774333333222110000
Q ss_pred cCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccce
Q 001160 696 LGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKV 775 (1134)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v 775 (1134)
........|...|
T Consensus 236 -------------------------------------------------------------------~~~~~~~~~~~~v 248 (408)
T 4a11_B 236 -------------------------------------------------------------------AVESANTAHNGKV 248 (408)
T ss_dssp -------------------------------------------------------------------CTTTSSCSCSSCE
T ss_pred -------------------------------------------------------------------eeccccccccCce
Confidence 0000012377889
Q ss_pred EEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEE
Q 001160 776 VRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYV 855 (1134)
Q Consensus 776 ~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~l 855 (1134)
.+++|+|++++|++++.||.+++||+...+..... .+.... . .. ............+.++
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------------~~~~~~----~-~~-~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVN--------------YGKVCN----N-SK-KGLKFTVSCGCSSEFV 308 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCC--------------CCCCCC----C-CS-SCCCCEECCSSSSCEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceec--------------cccccc----c-cc-ccceeEEecCCCceEE
Confidence 99999999999999999999999998653321100 000000 0 00 1222233334455566
Q ss_pred EEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEec-
Q 001160 856 MSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSP- 934 (1134)
Q Consensus 856 a~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~- 934 (1134)
+++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~ 384 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPA 384 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccc
Confidence 555699999999999999999999999999999999 8999999999999999999999877665543322 22333
Q ss_pred CCCEEEEEcCCCcEEEEeCCC
Q 001160 935 TLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 935 d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+...+.+.+.|+.+++|+...
T Consensus 385 ~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 385 FEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ---------------------
T ss_pred cceeecccCccCceeecCCcc
Confidence 344566777899999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=289.93 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=247.8
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
.+....+.+|.+.|.+++| +++ .+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. +
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~--~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD--SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----D 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET--TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----T
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC--CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----C
Confidence 3677889999999999999 654 79999999999999999988888888889999999999999999999985 7
Q ss_pred CcEEEEeCCCC---eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-
Q 001160 567 SHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK- 642 (1134)
Q Consensus 567 ~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~- 642 (1134)
+.+++|++... +.+..+.+|.. .|.+++| +++++++++.||.|++|| .++....+..+. ..+.+++|+|
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~ 153 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSF 153 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEET
T ss_pred CeEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccC
Confidence 88999998754 56777888877 8999999 578999999999999999 677777777664 4789999988
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
++.++++++.||.|++||.... .
T Consensus 154 ~~~~l~~~~~d~~i~i~d~~~~---~------------------------------------------------------ 176 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQNDKV---I------------------------------------------------------ 176 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTEE---E------------------------------------------------------
T ss_pred CCCEEEEEECCCCEEEEecCce---E------------------------------------------------------
Confidence 9999999999999999983211 0
Q ss_pred CccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecc
Q 001160 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~ 802 (1134)
..+.
T Consensus 177 --------------------------------------------------------------------------~~~~-- 180 (313)
T 3odt_A 177 --------------------------------------------------------------------------KTFS-- 180 (313)
T ss_dssp --------------------------------------------------------------------------EEEC--
T ss_pred --------------------------------------------------------------------------EEEe--
Confidence 0000
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC
Q 001160 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP 881 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~ 881 (1134)
. .| ...+.+++|+|++. +++++ ||.|++||+.+++.+..+.+|.
T Consensus 181 -------------------------------~--~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 225 (313)
T 3odt_A 181 -------------------------------G--IH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE 225 (313)
T ss_dssp -------------------------------S--SC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred -------------------------------c--cC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC
Confidence 0 03 67789999999998 66776 8999999999999999999999
Q ss_pred CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc
Q 001160 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL 959 (1134)
Q Consensus 882 ~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~ 959 (1134)
..|++++|+| ++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.|+.|++||+.+++..
T Consensus 226 ~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 226 SFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred ceEEEEEEec-CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence 9999999999 77 588999999999999999999999999999999999999998 667899999999999987754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=308.20 Aligned_cols=298 Identities=12% Similarity=0.142 Sum_probs=236.6
Q ss_pred EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec-CccCcceEEEEEeCC---CCEEEEEeCCCe
Q 001160 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGVVQFDTT---RNRFLAAGDEFQ 611 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg~ 611 (1134)
...+|...|.+++|+|++..+++++....+++.|++||+.+++...... +|.. .|.+++|+|+ ++++++++.||.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAK-PIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESS-CEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccC-cEEEEEEcCCCCCCceEEEecCCCe
Confidence 3456888999999999998777665321237899999999988765544 4444 8999999999 699999999999
Q ss_pred EEEEECCCCe-eEEEEeCCCCCCCcceEE------EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCC
Q 001160 612 IKFWDMDNMN-MLTTVDADGGLPASPRLR------FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1134)
Q Consensus 612 i~iwd~~~~~-~~~~~~~~~~~~~v~~~~------~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1134)
|++||+.+++ .+..+..|. ..|.+++ |+|++++|++++.||.|++||+.++......+..+..
T Consensus 92 i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------- 161 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-------- 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT--------
T ss_pred EEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC--------
Confidence 9999999988 788887664 4788884 5789999999999999999999876322222221110
Q ss_pred CCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEe
Q 001160 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1134)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 764 (1134)
T Consensus 162 -------------------------------------------------------------------------------- 161 (357)
T 3i2n_A 162 -------------------------------------------------------------------------------- 161 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEE----EecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 765 RLPDSIAASKVVRLI----YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 765 ~~~~~~~~~~v~~~~----~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
.+...+.+++ |+|+++.+++++.||.|++||+... .... ... | .
T Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------~~~~--~~~--~-~ 209 (357)
T 3i2n_A 162 -----ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM----------------------ALRW--ETN--I-K 209 (357)
T ss_dssp -----SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT----------------------EEEE--EEE--C-S
T ss_pred -----CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC----------------------ceee--ecC--C-C
Confidence 0133566776 7889999999999999999987532 2111 111 5 8
Q ss_pred CceEEEEecc---CCCEEEEEe-CCeEEEEECCCCeEEEEe-----cCCCCceEEEEEcCCCCc-EEEEEeCCCcEEEEE
Q 001160 841 ESAACIALSK---NDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNN-IIAIGMEDSSVQIYN 910 (1134)
Q Consensus 841 ~~i~~~~~s~---dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~-~lasg~~dg~i~iwd 910 (1134)
..|.+++|+| ++.++++++ ||.|++||+.+++....+ .+|...|++++|+| +++ +|++|+.||.|++||
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEee
Confidence 8999999999 999999998 999999999876654443 48999999999999 777 899999999999999
Q ss_pred cCCc-------------------eEEEEecCcccceEEEEEecCCCEEE-EEcCCCcEEEEeCCCcc
Q 001160 911 VRVD-------------------EVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 911 ~~~~-------------------~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~ 957 (1134)
+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|++||+.+.+
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9753 46778899999999999999999998 89999999999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=312.73 Aligned_cols=299 Identities=11% Similarity=0.177 Sum_probs=232.7
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC------------cCe
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA------------ISV 411 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V 411 (1134)
.+.+.|++++|+|+|+ +||+|+.||.|+|||+.+++........ .......+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRG--------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCC--------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccccc--------ceeEecccccccccccccccccccCce
Confidence 4567999999999998 7899999999999999987631100000 000111256787 889
Q ss_pred EEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccc------------------------------------eeeE-Eecc
Q 001160 412 NRCVWGPDG--LMLGVAFSKHIVHLYTYNPTGELR------------------------------------QHLE-IDAH 452 (1134)
Q Consensus 412 ~~i~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 452 (1134)
.+++|+|++ .+|++++.|+.|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999997643210 0011 3579
Q ss_pred cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC-CeeeE-------EecCCCCCeEEEEeeccCCccEEEEEecCCeEE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA-GRKQY-------TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIK 524 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~ 524 (1134)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++. .+|++++.||.|+
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIR 252 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEE
Confidence 99999999999999 88998 799999999984 44444 2568999999999987532 7999999999999
Q ss_pred EEEccCCCc----eeEecCCCC------------cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-CeeEEEecCcc
Q 001160 525 AWLYDYLGS----RVDYDAPGN------------WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAIKRTYSGFR 587 (1134)
Q Consensus 525 ~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~ 587 (1134)
+||+++... ...+..+.. .|.+++|+|++++|++++ ++.|++||+++ ++++..+.+|.
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESCG
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeeccc
Confidence 999998876 667777765 899999999999999886 37899999997 88888888875
Q ss_pred Cc-----------c---eEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC------------------------
Q 001160 588 KR-----------S---LGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD------------------------ 629 (1134)
Q Consensus 588 ~~-----------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------ 629 (1134)
.. . +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTC
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccc
Confidence 30 0 224899999999999999999999999998876422110
Q ss_pred ------CCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 630 ------GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 630 ------~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.....|..++|+|++.+||+++.++ +++|..
T Consensus 408 ~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 408 ISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1224578899999999999998875 777764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=313.67 Aligned_cols=243 Identities=13% Similarity=0.092 Sum_probs=201.4
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPT--GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
..+.++|.+++|+|+|++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 346789999999999999999999999999999987 3333 6778999999999999998 89999999999999
Q ss_pred ECCCCe---eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecC-CCCcEEEEEECCCCCE
Q 001160 483 DVVAGR---KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDA-PGNWCTMMAYSADGTR 555 (1134)
Q Consensus 483 d~~~~~---~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~ 555 (1134)
|+.+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++..+. ...+.. |...|.+++|+|++++
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 999887 677888999999999998854 8999999999999999998763 556666 8899999999999999
Q ss_pred EEEEeeCCCCCCcEEEEeCC------------------CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 556 LFSCGTSKEGESHLVEWNES------------------EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
+++++. ++.|++||+. .++++..+ +|.. .|.+++|+|++++|++++.||.|++||+
T Consensus 161 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 161 LAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999985 7889999985 35566677 6665 8999999999999999999999999999
Q ss_pred CCCee----EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 618 DNMNM----LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 618 ~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred CCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 99887 66666654 479999999999999998877666 666553
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=288.97 Aligned_cols=283 Identities=15% Similarity=0.255 Sum_probs=237.5
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
..++|+||+++ +||+|. |++|+|||+.+++.+... .+.+|...|.+++|+|+|++||+|+
T Consensus 27 y~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 27 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEE
Confidence 35789999986 677765 999999999999876431 1457889999999999999999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEecCCCCCeEEEEee
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i~~~ 506 (1134)
.||+|++||+.+++.+. .+.+|...+.++.+ ++. .+++|+.++.+++|+...+ ..+..+.+|...+..+.+.
T Consensus 87 ~Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp TTSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999987665 77889988877655 455 8999999999999998875 4567788999999999997
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
+.+ .++++++.|++|++||+.+++. ......+...|.+++++|++..++.... +..++.|++||.........
T Consensus 160 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 160 PDG--RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp TTS--SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEE
T ss_pred CCC--CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccccccc
Confidence 755 8999999999999999987654 3355667789999999998876653322 13578899999998887776
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAG--DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
..... .+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|||++|++|+.||+|+|||
T Consensus 237 ~~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 237 VDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred cccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 65443 688999999999988765 79999999999999999998764 5899999999999999999999999999
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
+.+.
T Consensus 313 ~~~~ 316 (318)
T 4ggc_A 313 CFEL 316 (318)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-31 Score=300.48 Aligned_cols=283 Identities=15% Similarity=0.235 Sum_probs=227.9
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+.++ +..+++++.|+.|++|++.. +......... | ...|.+++|+|++
T Consensus 94 ~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~----------------------~~~~~~~~~~--~-~~~v~~v~~s~~~ 146 (401)
T 4aez_A 94 YYLNLLDWS--NLNVVAVALERNVYVWNADS----------------------GSVSALAETD--E-STYVASVKWSHDG 146 (401)
T ss_dssp TTCBCEEEC--TTSEEEEEETTEEEEEETTT----------------------CCEEEEEECC--T-TCCEEEEEECTTS
T ss_pred ceEEEEeec--CCCEEEEECCCeEEEeeCCC----------------------CcEeEeeecC--C-CCCEEEEEECCCC
Confidence 344555655 45689999999999998643 2222211222 5 8899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcC-CceEEEEecCcccceEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR-VDEVKTKLKGHQNRITGL 930 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~-~~~~~~~l~~h~~~i~~l 930 (1134)
++|++|+ ||.|++||+.+++.+..+.+|...|.+++|++ ++|++|+.||.|++||+. .+..+..+.+|.+.|.++
T Consensus 147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999998 99999999999999999999999999999954 699999999999999998 567788899999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EE---CCeEEEEeC-CCc
Q 001160 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VH---ESQISVYDS-KLE 1005 (1134)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~---d~~v~vwd~-~~~ 1005 (1134)
+|+|++++|++++.|+.|++||+.+++. .....+|. ..|.+++|+|++..+++ ++ |+.|++||+ ++.
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIP-----KFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSE-----EEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCc-----cEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999999999999999998763 22333444 57899999998865554 54 899999999 666
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEE--ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAG--FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN 1083 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~--~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 1083 (1134)
.+..+. |...|.+++|+|++++|+++ +.||.|++||+.++......... .+...+.+++|+| ++.
T Consensus 296 ~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~--------~h~~~v~~~~~s~-dg~ 362 (401)
T 4aez_A 296 RVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--------AHDTRVLYSALSP-DGR 362 (401)
T ss_dssp EEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE--------CCSSCCCEEEECT-TSS
T ss_pred EEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec--------CCCCCEEEEEECC-CCC
Confidence 665553 36789999999999999994 48999999999997665543211 2335667899999 889
Q ss_pred EEEEEeCCCcEEEEecCCCcccc
Q 001160 1084 QIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1084 ~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
+|++++.||+|++|++.+++...
T Consensus 363 ~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 363 ILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEECTTSEEEEEECCC-----
T ss_pred EEEEEeCCCcEEEEECCCCcccc
Confidence 99999999999999999877543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=297.57 Aligned_cols=250 Identities=18% Similarity=0.292 Sum_probs=207.1
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
++.+|.+.|.+++|+|+|++||+|+.|++|++||+.++... ....+.+|...|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999876432 23468899999999999863 67 799999999999
Q ss_pred EEECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCC---
Q 001160 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSAD--- 552 (1134)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1134)
+||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999999986678999999999999999987643 2345667788999999998
Q ss_pred --------------CCEEEEEeeCCCCCCcEEEEeCCCC---eeEEEecCccCcceEEEEEeCCC----CEEEEEeCCCe
Q 001160 553 --------------GTRLFSCGTSKEGESHLVEWNESEG---AIKRTYSGFRKRSLGVVQFDTTR----NRFLAAGDEFQ 611 (1134)
Q Consensus 553 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 611 (1134)
+++|++++. |+.|++||++.+ +.+..+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 467888874 888999999755 46778888887 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 612 IKFWDMDNM---N-MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 12233333 3579999999999999999999999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=303.61 Aligned_cols=272 Identities=21% Similarity=0.310 Sum_probs=238.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|...|+|++| +++ ++++|+.||.|++||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 132 ~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 132 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEEE
Confidence 6678999887 676 688999999999999998876653 6789999999999 889999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee---EEecCCCCCeE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---YTFEGHEAPVY 501 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~---~~~~~h~~~v~ 501 (1134)
+|+.||.|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.+++.+ ..+.+|...|.
T Consensus 188 sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 260 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260 (435)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred EEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence 99999999999999987655 7789999999999964 4 7999999999999999988765 67889999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
++++ ++.++++++.||.|++||+++.+....+..|...|.++++ +++++++++. ++.|++||+++++.+.
T Consensus 261 ~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~ 330 (435)
T 1p22_A 261 VVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 330 (435)
T ss_dssp EEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEE
Confidence 9998 3379999999999999999999999999999999999999 4688998874 7889999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------eEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN---------MLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+.+|.. .|.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.+|++++.
T Consensus 331 ~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s~ 403 (435)
T 1p22_A 331 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSSH 403 (435)
T ss_dssp EECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECCS
T ss_pred EEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEeC
Confidence 9999887 8999988 78899999999999999997765 677777664 47999999 7889999999
Q ss_pred CCcEEEEECCCc
Q 001160 653 DNGIKILANSDG 664 (1134)
Q Consensus 653 dg~i~iw~~~~~ 664 (1134)
||.|++||+.+.
T Consensus 404 Dg~i~iwd~~~~ 415 (435)
T 1p22_A 404 DDTILIWDFLND 415 (435)
T ss_dssp SSEEEEEC----
T ss_pred CCEEEEEECCCC
Confidence 999999999876
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=294.63 Aligned_cols=275 Identities=8% Similarity=0.101 Sum_probs=236.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC-EE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL-ML 423 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~-~l 423 (1134)
|.+.|++++|+|+++ +|++|+.||.|+|||+.+++.... ...+.+|...|.+++|+|+++ +|
T Consensus 10 h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~l 72 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEEE
T ss_pred CCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcEE
Confidence 889999999999998 678899999999999988762110 001347999999999999999 99
Q ss_pred EEEeCCCeEEEEEc-CCCCccceeeEEec--ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---------CeeeE
Q 001160 424 GVAFSKHIVHLYTY-NPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---------GRKQY 491 (1134)
Q Consensus 424 as~~~dg~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---------~~~~~ 491 (1134)
++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred EEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 99999999999999 87643 36678 999999999999 77 899999999999999988 77777
Q ss_pred EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCc--eeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCC
Q 001160 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGS--RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGES 567 (1134)
Q Consensus 492 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~ 567 (1134)
.+. |...|.+++|+++ .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. ++
T Consensus 146 ~~~-~~~~v~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg 216 (342)
T 1yfq_A 146 NTK-VKNKIFTMDTNSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DG 216 (342)
T ss_dssp SSS-SCCCEEEEEECSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TS
T ss_pred EEe-eCCceEEEEecCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CC
Confidence 776 8999999999763 399999999999999998 443 334556777999999999 9999999874 78
Q ss_pred cEEEEeCCCC------eeEEEecCccC--------cceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCC
Q 001160 568 HLVEWNESEG------AIKRTYSGFRK--------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 568 ~i~~wd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
.|++|++... +....+..|.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+. ..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~~ 295 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-ED 295 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SS
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-CC
Confidence 8999999887 77778877742 379999999999999999999999999999999988887651 34
Q ss_pred CcceEEEccCCCEEEEEeCCCc
Q 001160 634 ASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
.|.+++ |++++|++++.||.
T Consensus 296 ~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 296 SVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EEEEEE--ECSSEEEEEEECTH
T ss_pred CceEec--CCCCeEEEEecCCc
Confidence 788888 99999999999998
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=303.80 Aligned_cols=297 Identities=13% Similarity=0.173 Sum_probs=242.7
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC-CCCEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP-DGLMLGV 425 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp-dg~~las 425 (1134)
.....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 35567999999876777789999999999966433211 1112678999999999999 9999999
Q ss_pred EeCCCeEEEEEcCCCCcc----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe--cCCCCC
Q 001160 426 AFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF--EGHEAP 499 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~--~~h~~~ 499 (1134)
|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|+.|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987432 233477899999999999999844 8999999999999999999999999 889999
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNW-CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
|.+++|+|++ .+|++++.|+.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||++++
T Consensus 179 v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 179 IYSVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred eEEEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence 9999998854 89999999999999999998888777 566654 899999999998888731 124889999999986
Q ss_pred ee-EEEecCccCcceEEEEEeCCCCEEEE-EeCCCeEEEEECCCCee-EEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 578 AI-KRTYSGFRKRSLGVVQFDTTRNRFLA-AGDEFQIKFWDMDNMNM-LTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 578 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+. +..........+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~ 333 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCE 333 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cce
Confidence 64 33443333337999999999999975 55799999999998874 555554444568999999999988764 567
Q ss_pred cEEEEECCCc
Q 001160 655 GIKILANSDG 664 (1134)
Q Consensus 655 ~i~iw~~~~~ 664 (1134)
.+++|++.++
T Consensus 334 ~~~~~~l~~~ 343 (402)
T 2aq5_A 334 IARFYKLHER 343 (402)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEEcCCC
Confidence 9999999775
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-30 Score=294.29 Aligned_cols=291 Identities=17% Similarity=0.262 Sum_probs=235.0
Q ss_pred ecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceE
Q 001160 765 RLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (1134)
Q Consensus 765 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~ 844 (1134)
..|+......+..++||+++ +++.+.|++|+|||.. +|+.... +....| ...|+
T Consensus 98 ~ap~~~~d~y~~~l~wS~~n--~lAvgld~tV~lWd~~----------------------tg~~~~~-~~~~~~-~~~V~ 151 (420)
T 4gga_A 98 DAPEIRNDYYLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQP-GEYIS 151 (420)
T ss_dssp ECTTCCCCTTCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCST-TCCEE
T ss_pred ECCCCcccccceeEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCC-CCcEE
Confidence 33443344567789999764 4555669999999764 3333221 122236 88899
Q ss_pred EEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001160 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
+++|+|||++||+|+ ||.|+|||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 999999999999999 9999999999999999999999999998885 479999999999999998864 56678899
Q ss_pred cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE-EEE---ECCeEE
Q 001160 923 HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL-LVV---HESQIS 998 (1134)
Q Consensus 923 h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l-~~~---~d~~v~ 998 (1134)
|...+..+.|+|+++++++++.|+.+++|+..+++.... .+.....+. ..|..++|+|++..+ +++ .|++|+
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred cccceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 999999999999999999999999999999988764322 222333343 579999999977644 443 479999
Q ss_pred EEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEE
Q 001160 999 VYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVI 1075 (1134)
Q Consensus 999 vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~--~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1075 (1134)
+||+ ++.+...+.. ...+.++.|+++++.+++++ .|+.|+|||+.+++++.++.+| ...+.++
T Consensus 305 iwd~~t~~~~~~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH----------~~~V~~l 370 (420)
T 4gga_A 305 IWNVCSGACLSAVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVLSL 370 (420)
T ss_dssp EEETTTTEEEEEEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEEEE
T ss_pred EEeCCccccceeecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC----------CCCEEEE
Confidence 9999 6666555543 46899999999999988765 7999999999999999988754 3567899
Q ss_pred eecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1076 APHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1076 ~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+|+| ||++|+||+.||+|++||+.+.+
T Consensus 371 ~~sp-dg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 371 TMSP-DGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EECT-TSSCEEEEETTTEEEEECCSCSS
T ss_pred EEcC-CCCEEEEEecCCeEEEEECCCCC
Confidence 9999 88999999999999999997654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=292.83 Aligned_cols=247 Identities=11% Similarity=0.093 Sum_probs=200.5
Q ss_pred CCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCe--EEEEecCCCCceEEEEEcCC-CCcEEEEEeCCCcEEEEEcCC
Q 001160 838 PTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQ-DNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 838 h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~-~~~~lasg~~dg~i~iwd~~~ 913 (1134)
| ...|++++|+|+|++||+|+ |++|+|||+.+++ .+..+.+|...|.+++|+|. ++++|++|+.|++|++||+.+
T Consensus 12 H-~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 H-EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred c-cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 8 99999999999999999999 9999999998774 56789999999999999862 488999999999999999998
Q ss_pred c--eEEEEecCcccceEEEEEecC--CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC----
Q 001160 914 D--EVKTKLKGHQNRITGLAFSPT--LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND---- 985 (1134)
Q Consensus 914 ~--~~~~~l~~h~~~i~~l~~s~d--~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd---- 985 (1134)
+ +.+..+.+|...|.+++|+|+ +.+|++++.|++|++||+.++... .......+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 789999999999999999875321 1123344555 46889999998
Q ss_pred -------------CcEEEE-EECCeEEEEeCC-CcceeccCCCCCCCCCeEEEEEccCC----CEEEEEecCCcEEEEeC
Q 001160 986 -------------QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSCDG----LLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 986 -------------g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~dg----~~l~~~~~dg~I~vwd~ 1046 (1134)
+++|++ +.|+.|++||+. ...........+|...|.+++|+|++ ++|++++.||+|++|++
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence 467888 578999999994 32222233346789999999999987 89999999999999999
Q ss_pred CCcce---e-eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1047 ETLRF---R-CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1047 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.++.. . ..+. .+...+.+++|+| ++++|++|+.||+|++|+...
T Consensus 246 ~~~~~~~~~~~~~~----------~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLH----------KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEE----------ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhh----------cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 87321 1 1111 2335677999999 789999999999999999863
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=294.32 Aligned_cols=293 Identities=16% Similarity=0.224 Sum_probs=241.6
Q ss_pred ccccceEEEEec-CCCCeeEEEEecC---CCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccC
Q 001160 333 DDLTKTVVRTLN-QGSNVMSMDFHPQ---QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 333 ~~~~~~~~~~l~-h~~~V~~v~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
+..+.+.+..+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h 85 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMH 85 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEEC
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------Eeccc
Confidence 445667777777 9999999999999 45 789999999999999987 433211 25679
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEE--ecCCCcEEEEEEcCCCcEEEEECC
Q 001160 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAF--AHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~--s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
...|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++||+.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSS
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECC
Confidence 999999999999999999999999999999987644 35579999999999 88887 89999999999999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCE----EEEE
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTR----LFSC 559 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~----l~~~ 559 (1134)
+++.+..+..|. .+.++.+.+ ..+++++.++.+++|+++......... .....+.++++.++... ++++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 160 SSNPMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCcEEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999999988665 566666643 588999999999999998766554332 23445666666665544 7777
Q ss_pred eeCCCCCCcEEEEeCCCC---eeEEEecCccCc-----------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 560 GTSKEGESHLVEWNESEG---AIKRTYSGFRKR-----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
+. ++.|++||+... ..+..+.+|... .|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 235 ~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 235 SI----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp ET----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cC----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 64 888999999987 566777777642 599999999999999999999999999999999988
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+..+. ..|.+++|+|+|++|++++.|+..+.|++
T Consensus 311 ~~~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 311 SEQLD--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CCCCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ecCCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence 87654 48999999999999999999876555543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=281.43 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=226.7
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
.++++||+++ .|+++. |++|++||+.+++.+..+..+. ...|.+++|+|+++++++|+.||.|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4678999986 666654 7789999999999988876432 23799999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccc
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNV 702 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1134)
+..+..|.. ...++++++..+++++.++.+++|+..........+
T Consensus 102 ~~~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------------------- 146 (318)
T 4ggc_A 102 LRNMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------------------- 146 (318)
T ss_dssp EEEEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------------------------------
T ss_pred EEEecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE-------------------------------
Confidence 999987743 345566778899999999999999976652211111
Q ss_pred ccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEec
Q 001160 703 SAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTN 782 (1134)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 782 (1134)
.+|...+..+.+++
T Consensus 147 ------------------------------------------------------------------~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 147 ------------------------------------------------------------------SGHSQEVCGLRWAP 160 (318)
T ss_dssp ------------------------------------------------------------------ECCSSCEEEEEECT
T ss_pred ------------------------------------------------------------------cCccCceEEEEEcC
Confidence 12567788999999
Q ss_pred CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE---EEe
Q 001160 783 SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM---SAS 859 (1134)
Q Consensus 783 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la---~~s 859 (1134)
+++++++++.||.|++||+...+.... ...... .| ...|.+++++|++..++ +++
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------~~~~~~--~~-~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWV-------------------PLQTFT--QH-QGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSC-------------------CSEEEC--CC-CSCEEEEEECTTSTTEEEEEECT
T ss_pred CCCEEEEEecCcceeEEECCCCccccc-------------------ceeeec--cc-CCceEEEEecCCCCcEEEEEecC
Confidence 999999999999999999754321100 000111 25 78899999999776433 344
Q ss_pred -CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe--CCCcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001160 860 -GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 860 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~--~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
++.|++||........... +...+..+.|+| ++..+++++ .|+.|+|||+.+++++..+.+|.+.|++|+|+||+
T Consensus 219 ~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 219 SDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp TTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred CCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 7899999999888776655 677899999999 677666554 79999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEeCCCc
Q 001160 937 NALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~~ 956 (1134)
++|||+|.|++|+|||+...
T Consensus 297 ~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SCEEEEETTTEEEEECCSCC
T ss_pred CEEEEEecCCeEEEEECCCC
Confidence 99999999999999999763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=300.26 Aligned_cols=249 Identities=13% Similarity=0.214 Sum_probs=207.5
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------cceeeEEeccc------------CCeeEEEEecCC
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE--------LRQHLEIDAHV------------GGVNDIAFAHPN 465 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~l~~s~d~ 465 (1134)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3778999999999999999999999999999997652 12344778998 889999999998
Q ss_pred --CcEEEEEEcCCCcEEEEECCCCeee---------------------------------------EE-ecCCCCCeEEE
Q 001160 466 --KQLCIVTCGDDKMIKVWDVVAGRKQ---------------------------------------YT-FEGHEAPVYSV 503 (1134)
Q Consensus 466 --~~~~l~sg~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i 503 (1134)
. .|++++.|+.|++||+.++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 7999999999999998765432 12 36899999999
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE--------ecCCCCcEEEEEECCCC-CEEEEEeeCCCCCCcEEEEeC
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD--------YDAPGNWCTMMAYSADG-TRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
+|+|++ .+|+++ .|+.|++||++....... +..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 998854 899998 899999999985443332 45788899999999999 89999875 788999999
Q ss_pred CCCee----EEEecCccC-----------cceEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCC----
Q 001160 575 SEGAI----KRTYSGFRK-----------RSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPA---- 634 (1134)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1134)
++++. +..+..+.. ..|.+++|+|++++|++++. +.|++||+.+ ++++..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788887764 27999999999999999999 9999999997 888888887643111
Q ss_pred ---------cceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 635 ---------SPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 635 ---------v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=284.80 Aligned_cols=253 Identities=12% Similarity=0.163 Sum_probs=217.2
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEec--CCCcEEEEEEcCCCcE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMI 479 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i 479 (1134)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+| +++ +|++|+.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 46789999999999999999999999999999999976432 33446789999999999999 577 89999999999
Q ss_pred EEEECCCC---------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec------------
Q 001160 480 KVWDVVAG---------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------------ 538 (1134)
Q Consensus 480 ~iwd~~~~---------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------------ 538 (1134)
++||+.++ +.+..+.+|...|.+++|+|+.++.++++++.|+.|++||+++.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999887 567888999999999999987435899999999999999998876543222
Q ss_pred -CCCCcEEEEEECCC---CCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCC----CEEEEEeC
Q 001160 539 -APGNWCTMMAYSAD---GTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTR----NRFLAAGD 608 (1134)
Q Consensus 539 -~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 608 (1134)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 46678999999997 889998874 67788888777765 677778776 89999999998 79999999
Q ss_pred CCeEEEEECCCC----------------------------------------------eeEEEEeCCCCCCCcceEEEcc
Q 001160 609 EFQIKFWDMDNM----------------------------------------------NMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
||.|++||+..+ +.+..+..| ...|.+++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcC
Confidence 999999999865 455555544 45799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCc
Q 001160 643 EGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999876
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=291.76 Aligned_cols=234 Identities=17% Similarity=0.305 Sum_probs=210.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+|...|.|++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ +|++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357778998887 89999999999999999999987655 77899999999999 677 8999999999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCce---eEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR---VDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..|...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999999999999999999853 69999999999999999987765 567788899999999 7889999874
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
++.|++||+++++.+..+.+|.. .+.++.++ ++++++|+.||.|++||+.+++.+..+..|. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 88899999999999999999887 89999884 6899999999999999999999999998664 47889988
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc
Q 001160 642 KEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++.+|++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999999998665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=282.83 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=210.4
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987633233355689999999999999872 378899999999999
Q ss_pred C-CCCeeeEEecC--CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC---------CCceeEecCCCCcEEEEEECC
Q 001160 484 V-VAGRKQYTFEG--HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY---------LGSRVDYDAPGNWCTMMAYSA 551 (1134)
Q Consensus 484 ~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1134)
+ .+++. ..+.+ |...|.+++|++ + .++++++.|+.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-D--DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-T--TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-C--CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77754 77888 999999999998 3 8999999999999999987 55555555 778999999999
Q ss_pred CCCEEEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCC------e
Q 001160 552 DGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNM------N 621 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~ 621 (1134)
++ +++++. ++.|++||+++ +.. ......+.. .+.+++|+| +++++++++.||.|++|+++.. +
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCC-ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 88 777664 78899999998 543 223334444 899999999 9999999999999999999887 7
Q ss_pred eEEEEeCCCC-------CCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 622 MLTTVDADGG-------LPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 622 ~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
....+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 7778876643 347999999999999999999999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=287.76 Aligned_cols=257 Identities=15% Similarity=0.209 Sum_probs=213.2
Q ss_pred EEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC--ccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 339 VVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS--RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 339 ~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
++..+. |.+.|++++|+|+|+ +||+|+.||.|+|||+.. ++.+. .+.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEE
Confidence 344555 999999999999998 788999999999999984 33332 2668999999999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCe--e
Q 001160 416 WGPD--GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGR--K 489 (1134)
Q Consensus 416 ~spd--g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~--~ 489 (1134)
|+|+ +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 999999999999999999987522 23366789999999999999 88 89999999999999998873 3
Q ss_pred eEEecCCCCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCCce----eEecCCCCcEEEEEECCC--
Q 001160 490 QYTFEGHEAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGSR----VDYDAPGNWCTMMAYSAD-- 552 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~-- 552 (1134)
...+.+|...|.+++|+|.. ++.++++++.|+.|++||+++.... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999999842 4589999999999999999876643 466778899999999999
Q ss_pred -CCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEe--cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE
Q 001160 553 -GTRLFSCGTSKEGESHLVEWNESEGA---IKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML 623 (1134)
Q Consensus 553 -~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1134)
++++++++. ++.|++||+.++. ....+ ..+.. .|.+++|+|++++|++++.||.|++|++......
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 899999874 7889999999864 22222 22444 8999999999999999999999999999854433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=283.04 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=219.3
Q ss_pred cCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCC
Q 001160 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGL 421 (1134)
Q Consensus 344 ~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~ 421 (1134)
.|.+.|++++|+|+|+ +|++|+.||.|+|||+.++..... ....+.+|...|.+++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 3889999999999998 788999999999999987643211 0112567999999999999 699
Q ss_pred EEEEEeCCCeEEEEEcCCCCcc------ceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 422 MLGVAFSKHIVHLYTYNPTGEL------RQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|++|+.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 9999999999999999886421 334467789999999999999 88 8999999999999999988765443
Q ss_pred c-------------CCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEccCCCc--eeEecCCCCcEEEEEECCCC----
Q 001160 494 E-------------GHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADG---- 553 (1134)
Q Consensus 494 ~-------------~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~---- 553 (1134)
. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 2 68889999999986 1248999999999998888777665 45667788899999999998
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCC----------------------------------------------eeEEEecCcc
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEG----------------------------------------------AIKRTYSGFR 587 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~----------------------------------------------~~~~~~~~~~ 587 (1134)
++|++++. |+.|++||++++ +.+..+.+|.
T Consensus 231 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 78888874 788999999875 6677788887
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
. .|.+++|+|++++|++++.||.|++|++.+++.+..+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 7 89999999999999999999999999999886665543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=288.94 Aligned_cols=253 Identities=19% Similarity=0.271 Sum_probs=218.0
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~i 481 (1134)
+.+|.+.|.+++|+|++++||+|+.||.|++||+..+.. .....+.+|...|++++|+++ +. +|++|+.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 678999999999999999999999999999999984322 233467899999999999987 77 8999999999999
Q ss_pred EECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECC------
Q 001160 482 WDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA------ 551 (1134)
Q Consensus 482 wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~------ 551 (1134)
||+.+++ .+..+.+|...|.+++|+|+.++.+|++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 77888899999999999987445899999999999999998874 3446678888999999999
Q ss_pred -------CCCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEecCccCcceEEEEEeCC---CCEEEEEeCCCeEEEEEC
Q 001160 552 -------DGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 552 -------~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~ 617 (1134)
++.++++++. ++.|++||++++. ....+.+|.. .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999875 7889999998764 5567777776 8999999999 899999999999999999
Q ss_pred CCCe---eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 618 DNMN---MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 618 ~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.++. ....+....+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9864 2333333335568999999999999999999999999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=290.56 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=210.1
Q ss_pred cCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEec-CCCcEEEEEEcCCCcEEEEECC
Q 001160 409 ISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAH-PNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 409 ~~V~~i~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~-d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
.....++++|+...++ +++.||.|+||++...... .....+.+|.+.|.+++|+| ++. +|++|+.|+.|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455789999876554 5788999999999664332 33335779999999999999 777 89999999999999999
Q ss_pred CC-------eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe--cCCCCcEEEEEECCCCCEE
Q 001160 486 AG-------RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY--DAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 486 ~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 556 (1134)
++ +.+..+.+|...|.+++|+|++. .+|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBT-TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCC-CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 67888999999999999988642 59999999999999999998888888 7889999999999999999
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEe-cCccCcceEEEEEeCCCCEEEEE---eCCCeEEEEECCCCee-EEEEeCCCC
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTTRNRFLAA---GDEFQIKFWDMDNMNM-LTTVDADGG 631 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1134)
++++. ++.|++||+++++.+..+ ..|....+.++.|+|++.++++| +.|+.|++||+.+++. +..... .+
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~ 266 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT 266 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC
Confidence 99974 788999999999999998 67776458999999999999998 7999999999998664 333332 22
Q ss_pred CCCcceEEEccCCCEEEEE-eCCCcEEEEECCCc
Q 001160 632 LPASPRLRFNKEGSLLAVT-TSDNGIKILANSDG 664 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~~ 664 (1134)
...+.+++|+|++++|+++ +.||.|++|++.++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 3468999999999999754 47999999999876
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=283.02 Aligned_cols=298 Identities=12% Similarity=0.151 Sum_probs=233.9
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccC-CccEEEEEecCCeEEEEEccC-CCce-eEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDY-LGSR-VDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
|+....+.+..+.+|.+.|++++|+|+. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 4555667778889999999999999862 248999999999999999997 4443 577789999999999999999999
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE--eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF--DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++. ++.|++||+.+++.+.. ..|.. .|.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQI-AQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCceee-ccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 974 78899999999987764 44555 8999999 8999999999999999999999999998888653 345
Q ss_pred eEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCC
Q 001160 637 RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRG 716 (1134)
Q Consensus 637 ~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1134)
++.+. +..+++++.++.+.+|++............
T Consensus 175 ~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADVI--YPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEec--CCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 55554 558888999999999998654110000000
Q ss_pred CCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCee
Q 001160 717 PPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVH 796 (1134)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v 796 (1134)
.+
T Consensus 210 -----------------------------------------------------~~------------------------- 211 (368)
T 3mmy_A 210 -----------------------------------------------------PL------------------------- 211 (368)
T ss_dssp -----------------------------------------------------SC-------------------------
T ss_pred -----------------------------------------------------cc-------------------------
Confidence 00
Q ss_pred EEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCE----EEEEe-CCeEEEEECCCC
Q 001160 797 KLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSY----VMSAS-GGKVSLFNMMTF 871 (1134)
Q Consensus 797 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~----la~~s-dg~i~vwd~~~~ 871 (1134)
...+.++++.++... +++++ ||.|++||+...
T Consensus 212 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 212 -------------------------------------------KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -------------------------------------------SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred -------------------------------------------cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence 112223333332222 66666 777777777765
Q ss_pred ---eEEEEecCCCC------------ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCC
Q 001160 872 ---KVMTMFMSPPP------------AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL 936 (1134)
Q Consensus 872 ---~~~~~~~~~~~------------~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~ 936 (1134)
+....+.+|.. .|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG 327 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS
T ss_pred CccccceeeeeeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC
Confidence 44556666655 799999999 89999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCcEEEEeCCC
Q 001160 937 NALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 937 ~~l~s~~~D~~i~iWd~~~ 955 (1134)
++|++++.|+..+.|++-.
T Consensus 328 ~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 328 NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SCEEEEECCCSTTCGGGCC
T ss_pred CeEEEEecccccccccccC
Confidence 9999999988666665544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=286.58 Aligned_cols=299 Identities=11% Similarity=0.055 Sum_probs=234.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc---ccccccceeeccccc----------------------------
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE---RLAHKPFKVWDISAA---------------------------- 395 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 395 (1134)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 56555 47899999999988 3322 221100
Q ss_pred ------------cccccccccccCCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCccceeeEEecccCCeeEEE
Q 001160 396 ------------SMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN--PTGELRQHLEIDAHVGGVNDIA 460 (1134)
Q Consensus 396 ------------~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~ 460 (1134)
..........+|.+.|.+++|+|+|++| |+|+.||.|++||+. +++.+.... ...|...|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111134677789999999999996 899999999999999 776655221 125778999999
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeeeE----EecCCCCCeEEEEeecc-CCccEEEEEecCCeEEEEEccCCCcee
Q 001160 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY----TFEGHEAPVYSVCPHHK-ESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 461 ~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~i~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+|+ ..+.+|++++.|++|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 89999999999999998887554 77889999999999987 224899999999999999999888777
Q ss_pred E-ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc------------------------Ccc
Q 001160 536 D-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR------------------------KRS 590 (1134)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------------------~~~ 590 (1134)
. +..|...|.+++|+ ++++|++++. |+.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788999999999 9999999984 7889999999999888876431 236
Q ss_pred eEEEEEeCCCCEEEEEe-CCCeEEEEEC--CCC---eeEEEEeCCCCCCCcceEEEccCCCEEEEEeC------CCcEEE
Q 001160 591 LGVVQFDTTRNRFLAAG-DEFQIKFWDM--DNM---NMLTTVDADGGLPASPRLRFNKEGSLLAVTTS------DNGIKI 658 (1134)
Q Consensus 591 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------dg~i~i 658 (1134)
+..++|+|+++++++++ .++.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88999999999999998 8999999999 555 666777765 47899999996544433332 456888
Q ss_pred EECCC
Q 001160 659 LANSD 663 (1134)
Q Consensus 659 w~~~~ 663 (1134)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 87643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-28 Score=256.10 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=207.8
Q ss_pred eeEEEEe-cCCCcEEEEEEcCCCcEEEEECCCC---eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 456 VNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAG---RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 456 v~~l~~s-~d~~~~~l~sg~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
+.++.|- +..+.+.+++++ ...|++|+..++ +.++++.+|+.+|..+.+.|+..+-..++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5566663 344555677777 568999999999 8999999999999999999876432222211
Q ss_pred CceeEecCCCCcEEEEEECCC----CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 532 GSRVDYDAPGNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
..+...|.+++++|| ++++++++. .+.+|++.+ ++.+.+++
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~-----------------------g~lv~ss~ 152 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTK-----------------------RRLVSSSG 152 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETT-----------------------TEEEEEES
T ss_pred ------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCC-----------------------CcEEEecc
Confidence 234457889999999 889998763 266675433 33333322
Q ss_pred --CCCeEEEEEC-CCCeeEEEEeCCCCCCCcceEEEcc---CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCC
Q 001160 608 --DEFQIKFWDM-DNMNMLTTVDADGGLPASPRLRFNK---EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRC 681 (1134)
Q Consensus 608 --~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 681 (1134)
.|+.|++|++ .+++.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.++ +.++++.+|..
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~----- 224 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS----- 224 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-----
Confidence 4677777777 34666666666644 678889998 7899999999999999999998 55555443211
Q ss_pred CCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccce
Q 001160 682 PSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQI 761 (1134)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~ 761 (1134)
T Consensus 225 -------------------------------------------------------------------------------- 224 (356)
T 2w18_A 225 -------------------------------------------------------------------------------- 224 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCC
Q 001160 762 KALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEE 841 (1134)
Q Consensus 762 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~ 841 (1134)
+...+.+++|+|+|.++++++.+..
T Consensus 225 ---------~v~~v~~vafSpdG~~lvs~s~~~~---------------------------------------------- 249 (356)
T 2w18_A 225 ---------YQASVCHKAYSEMGLLFIVLSHPCA---------------------------------------------- 249 (356)
T ss_dssp -----------CCCEEEEEEETTEEEEEEC--------------------------------------------------
T ss_pred ---------ceeeeEEEEECCCCCEEEEeccCCC----------------------------------------------
Confidence 1235678899999998877654311
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEe-----cCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
...+++|+ |++|++||..+++.+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++
T Consensus 250 ----------~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 250 ----------KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp ------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCS
T ss_pred ----------cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCc
Confidence 11467787 899999999999988765 367666544444 46799999999999999999999
Q ss_pred EEEEecCcccceE-EEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 916 VKTKLKGHQNRIT-GLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 916 ~~~~l~~h~~~i~-~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
++.++.+|.+.+. .++|||||++|+||+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999988765 5899999999999999999999986
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=276.24 Aligned_cols=283 Identities=13% Similarity=0.145 Sum_probs=217.3
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+++.++. |.+.|++++|||||+ +||+|+.+| ++|||+.+++.... .+...+..+++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~ 66 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRM 66 (355)
T ss_dssp ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEE
T ss_pred CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEE
Confidence 3444445 889999999999998 788888664 78999988765432 12235888999
Q ss_pred cCCCCEEE-EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC-eeeEEec
Q 001160 417 GPDGLMLG-VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG-RKQYTFE 494 (1134)
Q Consensus 417 spdg~~la-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~-~~~~~~~ 494 (1134)
+++++.++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+.
T Consensus 67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~ 137 (355)
T 3vu4_A 67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDI 137 (355)
T ss_dssp CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEec
Confidence 99999885 56778999999999987665 444 67799999998764 3333 3789999999998 7776665
Q ss_pred CCCCCeEEEEeeccCCccEEEE--EecCCeEEEEEccCCC----------------ceeEecCCCCcEEEEEECCCCCEE
Q 001160 495 GHEAPVYSVCPHHKESIQFIFS--TAIDGKIKAWLYDYLG----------------SRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
. +...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|
T Consensus 138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l 210 (355)
T 3vu4_A 138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV 210 (355)
T ss_dssp E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence 4 444455555 35555 5899999999998765 256788999999999999999999
Q ss_pred EEEeeCCCCCCc-EEEEeCCCCeeEEEec-C-ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEE--E------
Q 001160 557 FSCGTSKEGESH-LVEWNESEGAIKRTYS-G-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLT--T------ 625 (1134)
Q Consensus 557 ~~~~~~~~~~~~-i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~------ 625 (1134)
++++. |++ |++||+++++.+..+. + |.. .|.+++|+|++++|++++.|+.|++||+..+.... .
T Consensus 211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp EEEET----TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred EEEeC----CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99985 888 9999999999999998 5 555 89999999999999999999999999997653111 1
Q ss_pred ------------EeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 626 ------------VDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 626 ------------~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+... ........++|++|++.|++++.||.+++|++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 1111 11123467999999999999999999999998766
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-27 Score=268.46 Aligned_cols=328 Identities=11% Similarity=0.124 Sum_probs=258.3
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++ .++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDG--TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS--SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCC--CEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 78999999999999999999999988765 48999998865 655 677799999999999888777776655 89999
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeeEEEE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1134)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36889999999999988887654 57899999999987 67778999999999999998888
Q ss_pred eCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccc
Q 001160 627 DADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ...
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~------------------------------------ 194 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VID------------------------------------ 194 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEE------------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEE------------------------------------
Confidence 7653 46899999999887 566778999999986551 000
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCc
Q 001160 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
T Consensus 195 -------------------------------------------------------------------------------- 194 (391)
T 1l0q_A 195 -------------------------------------------------------------------------------- 194 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe----CC
Q 001160 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GG 861 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s----dg 861 (1134)
.. . + ...+.+++|+|+|+++++++ ++
T Consensus 195 ------------~~----------------------------------~---~-~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 195 ------------TV----------------------------------K---V-EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp ------------EE----------------------------------E---C-SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ------------EE----------------------------------e---c-CCCccceEECCCCCEEEEEecCcCCC
Confidence 00 0 1 34567788888888887775 58
Q ss_pred eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEE-EEEeCCCcEEEEEcCCceEEEEecCcccceE---EEE------
Q 001160 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT---GLA------ 931 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~i~---~l~------ 931 (1134)
.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQP 302 (391)
T ss_dssp EEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCC
T ss_pred cEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccc
Confidence 89999999999988888665 578999999 77766 6778899999999999999988877765421 122
Q ss_pred ------EecCC----------CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 932 ------FSPTL----------NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 932 ------~s~d~----------~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
|+.+. ..+...+.|.++++|++..+.... + ......|+++|.|.+.
T Consensus 303 ~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~---------~-----~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 303 VYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK---------K-----QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC---------S-----SSCEECCSSCEEEEEE
T ss_pred cccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC---------c-----CCCeEEeCCCceEEEE
Confidence 22221 345666778899999998766311 0 1134679999998876
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=275.98 Aligned_cols=336 Identities=11% Similarity=0.130 Sum_probs=255.1
Q ss_pred CeEEEE---EcCCCCEEEEE--------------eCCCeEEEEEc--CCCCccceeeEEecccCCeeEEEEecCCCcEEE
Q 001160 410 SVNRCV---WGPDGLMLGVA--------------FSKHIVHLYTY--NPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI 470 (1134)
Q Consensus 410 ~V~~i~---~spdg~~las~--------------~~dg~i~iwd~--~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l 470 (1134)
.+..++ |+|+++.++.. +.++.+.+|.+ .++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455566 66666655543 22332344444 3332 2222244444 4567999999665 78
Q ss_pred EEEcCCCcEEEEECCCCeeeE-----EecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEE
Q 001160 471 VTCGDDKMIKVWDVVAGRKQY-----TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 471 ~sg~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1134)
++++.|+.|++||+.+++.+. .+.+|...|.+++|++++ .++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN--ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT--EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC--EEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888999999999999999887 455789999999996654 8999999999999999999888888888888999
Q ss_pred EEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe--------CCCeEEEEEC
Q 001160 546 MMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG--------DEFQIKFWDM 617 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~ 617 (1134)
+++|+|+++.+++++. .++.|++||+++++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+
T Consensus 216 ~~~~~~~~~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 216 ILLYDPIRDLVYCSNW---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp EEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred EEEEcCCCCEEEEEec---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999876552 37789999999999988887654 589999999999999987 4889999999
Q ss_pred CCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCcccccc
Q 001160 618 DNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINAL 696 (1134)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1134)
.+++.+..+... ..+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 291 ~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~------------------------ 342 (433)
T 3bws_A 291 DKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP------------------------ 342 (433)
T ss_dssp TTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE------------------------
T ss_pred CCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec------------------------
Confidence 999887776432 257889999999755 56688999999998765 1111100
Q ss_pred CCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceE
Q 001160 697 GPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV 776 (1134)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~ 776 (1134)
+...+.
T Consensus 343 --------------------------------------------------------------------------~~~~~~ 348 (433)
T 3bws_A 343 --------------------------------------------------------------------------VFDKPN 348 (433)
T ss_dssp --------------------------------------------------------------------------CSSSEE
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 234467
Q ss_pred EEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001160 777 RLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 777 ~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
+++|+|+|+.+++++.+.. .+ +..+++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~----------------------------------------------~~-------~~~~~~ 375 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPN----------------------------------------------HP-------TEGYLK 375 (433)
T ss_dssp EEEECTTSSEEEEEECCCC----------------------------------------------CT-------TTCTTS
T ss_pred eEEEcCCCCEEEEEecCCC----------------------------------------------cc-------cccccc
Confidence 8889999887777664310 00 223345
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEEcCC
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRV 913 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~ 913 (1134)
+|+ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++|++..
T Consensus 376 ~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 376 KGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred ccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 555 89999999999999988886 45799999999 8888887775 99999999863
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=270.02 Aligned_cols=278 Identities=10% Similarity=0.075 Sum_probs=227.3
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE-EEEeCCCeEEEEEcC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML-GVAFSKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l-as~~~dg~i~iwd~~ 438 (1134)
+++++++.|+.|++||+.+++.+.. +..| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 5788999999999999999876643 3334 458999999999987 567789999999999
Q ss_pred CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE-EEE
Q 001160 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI-FST 517 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~ 517 (1134)
+++.+. .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|++++ ..+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg--~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDG--KKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTS--SEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCC--CEEEEEe
Confidence 887654 444444 8999999999994 3456778899999999999998888754 568999998765 655 788
Q ss_pred ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEe
Q 001160 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1134)
+.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+++++.+..+..+. .+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEEC
Confidence 88999999999988777766654 45699999999999865442 47889999999999888776543 68899999
Q ss_pred CCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 598 TTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|++| ++++.|+.|++||+.++ +....+..
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 9999999887 68999999999999988887653 46889999999987 56678999999999988 55555554
Q ss_pred Cc
Q 001160 674 RA 675 (1134)
Q Consensus 674 ~~ 675 (1134)
+.
T Consensus 285 ~~ 286 (391)
T 1l0q_A 285 GK 286 (391)
T ss_dssp SS
T ss_pred Cc
Confidence 43
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=276.31 Aligned_cols=305 Identities=8% Similarity=0.062 Sum_probs=248.3
Q ss_pred CccccCcccc--ceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeecccccccccccccc
Q 001160 327 PNVYSQDDLT--KTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALL 404 (1134)
Q Consensus 327 ~~~~~~~~~~--~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 404 (1134)
..+|.++... .+.+..+.....+.+++|+|++ .++++++.++.|++||+.+++...... ...+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccc
Confidence 3555565533 3667777767778899999955 588888889999999999887654211 1124
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||+
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 5789999999999999999999999999999999877655 56688999999999999984 3467778999999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--------cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEE
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 556 (1134)
.+++.+..+..+ ..+.+++|+|++ .++++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 999998888754 458999998754 7888887 4889999999877655544 334478899999999877
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC---------------CCeEEEEECCCCe
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD---------------EFQIKFWDMDNMN 621 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1134)
++.+. .++.|++||+.+++.+..+... . .+.+++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPVF-D-KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEECS-S-SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecCC-C-CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65542 4788999999999988887633 3 6889999999999988775 5799999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CCcEEEEECC
Q 001160 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DNGIKILANS 662 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg~i~iw~~~ 662 (1134)
.+..+..+ ..+.+++|+|+|++|++++. |+.|++|++.
T Consensus 393 ~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAG---NQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECS---SSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCC---CCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 99888763 36899999999999998875 9999999975
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=280.98 Aligned_cols=266 Identities=15% Similarity=0.233 Sum_probs=217.1
Q ss_pred EEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 339 VVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 339 ~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45566799999999999985568999999999999999863111000 000001112568999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCCcc----ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC---eee
Q 001160 419 DGL-MLGVAFSKHIVHLYTYNPTGEL----RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG---RKQ 490 (1134)
Q Consensus 419 dg~-~las~~~dg~i~iwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~---~~~ 490 (1134)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999884332 223466789999999999995444 8999999999999999987 577
Q ss_pred EEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEecCCCCcEEEEEECCCCCE-EEEEeeCCCCCCc
Q 001160 491 YTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDYDAPGNWCTMMAYSADGTR-LFSCGTSKEGESH 568 (1134)
Q Consensus 491 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~~~~ 568 (1134)
..+..|...|.+++|+|.+. .++++|+.||.|++||++. ......+..|...|.+++|+|+++. +++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 88889999999999998652 4799999999999999998 4556788889999999999999964 667663 788
Q ss_pred EEEEeCCC--------------CeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCCC
Q 001160 569 LVEWNESE--------------GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDNM 620 (1134)
Q Consensus 569 i~~wd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1134)
|++||+.. .+.+..+.+|.. .|.+++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356777777776 899999999998 8999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=277.47 Aligned_cols=252 Identities=17% Similarity=0.274 Sum_probs=213.5
Q ss_pred cccCCcCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-------CccceeeEEecccCCeeEEEEecCCCcEEEEEEcC
Q 001160 404 LNDAAISVNRCVWGPD-GLMLGVAFSKHIVHLYTYNPT-------GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1134)
Q Consensus 404 l~~h~~~V~~i~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~ 475 (1134)
...|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~ 202 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSASD 202 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEECT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEeC
Confidence 5679999999999997 789999999999999999862 112334477899999999999999886 7999999
Q ss_pred CCcEEEEECCCCee-------eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC---CceeEecCCCCcEE
Q 001160 476 DKMIKVWDVVAGRK-------QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL---GSRVDYDAPGNWCT 545 (1134)
Q Consensus 476 d~~i~iwd~~~~~~-------~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 545 (1134)
||.|++||+.++.. ...+.+|...|.+++|+|.. +.+|++++.|+.|++||+++. .....+..|...|.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999987432 45677899999999999853 379999999999999999987 45667778899999
Q ss_pred EEEECCCCCE-EEEEeeCCCCCCcEEEEeCCC-CeeEEEecCccCcceEEEEEeCCCC-EEEEEeCCCeEEEEECCC---
Q 001160 546 MMAYSADGTR-LFSCGTSKEGESHLVEWNESE-GAIKRTYSGFRKRSLGVVQFDTTRN-RFLAAGDEFQIKFWDMDN--- 619 (1134)
Q Consensus 546 ~~~~s~~~~~-l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 619 (1134)
+++|+|++.+ +++++. ++.|++||+++ +.++..+..|.. .|.+++|+|+++ .+++++.|+.|++||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred EEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999984 667764 78899999998 567888888877 899999999995 688899999999999987
Q ss_pred -----------CeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCc
Q 001160 620 -----------MNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 620 -----------~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+.+..+..| ...|.+++|+|+++ +|++++.||.|++|++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2444554444 45799999999999 9999999999999999765
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=308.94 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=211.5
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc--cccccccceeeccccccccccccccccCCcCeEEEEEcCC--C
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR--ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD--G 420 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd--g 420 (1134)
|.+.|++++|+|+|+ ++++|+.||.|+|||+.++ +.+. .+.+|.+.|.+++|+|+ +
T Consensus 8 H~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 8 HNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTTSC
T ss_pred CcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCCCC
Confidence 899999999999998 6889999999999999843 3322 26789999999999998 9
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEEEEECCCC--eeeEEecCC
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIKVWDVVAG--RKQYTFEGH 496 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~iwd~~~~--~~~~~~~~h 496 (1134)
++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||.|++||+.++ .....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998752 233367789999999999999 88 8999999999999999887 344567789
Q ss_pred CCCeEEEEeeccC-----------CccEEEEEecCCeEEEEEccCCCc----eeEecCCCCcEEEEEECCC---CCEEEE
Q 001160 497 EAPVYSVCPHHKE-----------SIQFIFSTAIDGKIKAWLYDYLGS----RVDYDAPGNWCTMMAYSAD---GTRLFS 558 (1134)
Q Consensus 497 ~~~v~~i~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~---~~~l~~ 558 (1134)
...|.+++|+|.. ++.++++|+.||.|++||+++... ...+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999999842 458999999999999999988743 3467788999999999999 899999
Q ss_pred EeeCCCCCCcEEEEeCCCCe-----eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 559 CGTSKEGESHLVEWNESEGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
++. ++.|++||+.++. .......+.. .|.+++|+|+++++++++.||.|++|++..+.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 875 7889999999864 2223333444 89999999999999999999999999998643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=264.38 Aligned_cols=240 Identities=12% Similarity=0.184 Sum_probs=190.0
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
+..|...|.+++|||||++||+|+.++ +++||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 2 22335888999998883 346788899999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
+.+++.+..+. |...|.+++++++ .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 6779999999753 34443 4889999999987 44444433 445566777 67776521
Q ss_pred CCCCCcEEEEeCCCCe----------------eEEEecCccCcceEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeeEEE
Q 001160 563 KEGESHLVEWNESEGA----------------IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQ-IKFWDMDNMNMLTT 625 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 625 (1134)
..++.|++||+.++. .+..+.+|.. .|.+++|+|+|++|++|+.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 247889999999865 2678888887 8999999999999999999998 99999999999999
Q ss_pred EeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 626 VDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+....+...|.+++|+|+|++|++++.|++|++||+.++
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 983223458999999999999999999999999999765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=275.38 Aligned_cols=286 Identities=10% Similarity=0.066 Sum_probs=227.4
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe---eEEEecCccC------------------------------
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA---IKRTYSGFRK------------------------------ 588 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~------------------------------ 588 (1134)
.++.+++|+++|++++++. ++.|++||+.+|+ .+..+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-----~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-----KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN 79 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-----TTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-----CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence 4678999999999777664 5679999999998 6666553321
Q ss_pred -----------------------cceEEEEEeCCCCEE-EEEeCCCeEEEEECC--CCeeEEEEeCCCCCCCcceEEEcc
Q 001160 589 -----------------------RSLGVVQFDTTRNRF-LAAGDEFQIKFWDMD--NMNMLTTVDADGGLPASPRLRFNK 642 (1134)
Q Consensus 589 -----------------------~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~ 642 (1134)
..|.+++|+|++++| ++++.||.|++||+. +++.+..+..+.+...|.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 159999999999996 788899999999999 888888887544455799999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCccc
Q 001160 643 EGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSI 722 (1134)
Q Consensus 643 d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1134)
++++|++++.+|.+++|++.++.. ....
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~-~~~~--------------------------------------------------- 187 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPE-EKFT--------------------------------------------------- 187 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCC-SSCC---------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEecCCccc-cccc---------------------------------------------------
Confidence 999999999999999999876611 0000
Q ss_pred CccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC---CcceEEeeccCeeEEe
Q 001160 723 SSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS---GLSLLALASNAVHKLW 799 (1134)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~~~~dg~v~vw 799 (1134)
.. .-.+|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 188 -----------------------------------~~-------~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vw 225 (450)
T 2vdu_B 188 -----------------------------------QE-------PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKIS 225 (450)
T ss_dssp -----------------------------------CC-------CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEE
T ss_pred -----------------------------------ce-------eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEE
Confidence 00 00126678999999999 9999999999999999
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEec
Q 001160 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM 878 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~ 878 (1134)
|+.. +..+...+.+ | ...|.+++|+ |+++|++++ |+.|++||+.+++++..+.
T Consensus 226 d~~~----------------------~~~~~~~~~~--h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 226 HYPQ----------------------CFIVDKWLFG--H-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp EESC----------------------TTCEEEECCC--C-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred ECCC----------------------CceeeeeecC--C-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 8742 2222222333 7 8999999999 999999999 9999999999999888876
Q ss_pred C-------------------------CCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEc--CCc---eEEEEecCcccce
Q 001160 879 S-------------------------PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV--RVD---EVKTKLKGHQNRI 927 (1134)
Q Consensus 879 ~-------------------------~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~--~~~---~~~~~l~~h~~~i 927 (1134)
. ....|.+++|+| ++++|++++ .|+.|+||++ .++ +.+..+.+| +.|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v 357 (450)
T 2vdu_B 280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNV 357 (450)
T ss_dssp CHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCE
T ss_pred chhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cce
Confidence 3 235689999999 899999998 8999999999 666 777888888 889
Q ss_pred EEEEEecCCCEEEEE-cC------CCcEEEEeCCC
Q 001160 928 TGLAFSPTLNALVSS-GA------DAQLCMWSIDK 955 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~-~~------D~~i~iWd~~~ 955 (1134)
.+++|+|++ +++++ +. +..|.+|.+..
T Consensus 358 ~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 358 ISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecCCc-EEEEEecccCCCCCCcceEEEEEEc
Confidence 999999965 44444 33 45688887754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=270.35 Aligned_cols=196 Identities=11% Similarity=0.143 Sum_probs=156.3
Q ss_pred CCCCceEEEEecc--CCCEEEEEe-CCeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 838 PTEESAACIALSK--NDSYVMSAS-GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 838 h~~~~i~~~~~s~--dg~~la~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
| ...|.+++|+| +++++++++ ||+|++||+.+++....... |...|++++|+| ++.+||+|+.||.|++||+.+
T Consensus 124 ~-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 124 S-ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp C-SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC
T ss_pred C-CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 5 67899999999 999999999 99999999999998777644 455899999999 999999999999999999999
Q ss_pred ceEE-EEecC-cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCc--eEEEECCCCcEE
Q 001160 914 DEVK-TKLKG-HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE--TKVQFHNDQTHL 989 (1134)
Q Consensus 914 ~~~~-~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~fspdg~~l 989 (1134)
++.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++.... +.....+. ..+ .+++|+|+|++|
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l 275 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNM 275 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEE
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEE
Confidence 9887 78888 999999999999999999999 45999999998764322 11111121 122 469999999999
Q ss_pred EEE-E-CCeEEEEeCC-CcceeccCCCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEeCCC
Q 001160 990 LVV-H-ESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC---DGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 990 ~~~-~-d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~---dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
+++ . ++.|++|++. .... +. ..++..++|++ +++.+++++.||.+.++-...
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKN--WT-----KDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCS--EE-----EEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEecCCCCcEEEEEEcccccc--eE-----ecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 994 4 8999999983 2221 11 14677888988 889999999999999886443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=300.21 Aligned_cols=254 Identities=18% Similarity=0.268 Sum_probs=216.3
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecC--CCcEEEEEEcCCCcEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHP--NKQLCIVTCGDDKMIK 480 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~sg~~d~~i~ 480 (1134)
++.+|.+.|++++|+|+|++|++|+.||.|++||+.++.. .....+.+|.++|++++|+++ +. +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985322 233477899999999999988 77 899999999999
Q ss_pred EEECCCCe--eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECC-----
Q 001160 481 VWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSA----- 551 (1134)
Q Consensus 481 iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1134)
+||+.+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 67788899999999999987445899999999999999998873 3456678889999999999
Q ss_pred --------CCCEEEEEeeCCCCCCcEEEEeCCCC----eeEEEecCccCcceEEEEEeCC---CCEEEEEeCCCeEEEEE
Q 001160 552 --------DGTRLFSCGTSKEGESHLVEWNESEG----AIKRTYSGFRKRSLGVVQFDTT---RNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 552 --------~~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 616 (1134)
+++.+++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999874 788999999877 56677888877 8999999999 89999999999999999
Q ss_pred CCCCeeE---EEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 617 MDNMNML---TTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222234567999999999999999999999999999865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=267.07 Aligned_cols=267 Identities=8% Similarity=0.051 Sum_probs=211.7
Q ss_pred EEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeE
Q 001160 353 DFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIV 432 (1134)
Q Consensus 353 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i 432 (1134)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445665 789999999999999999876643 11 456888889988 9999999999
Q ss_pred EEEEcCC---------CCccceeeEEecccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeeeEEecC-CCCCe
Q 001160 433 HLYTYNP---------TGELRQHLEIDAHVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG-HEAPV 500 (1134)
Q Consensus 433 ~iwd~~~---------~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~-h~~~v 500 (1134)
++|+... ++.+.. ...+|...|.+++|+| +++ ++++|+.|++|++||+.+++.+..+.. |...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 9997663 322221 1226778999999999 998 899999999999999999998776644 55689
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCce-eEecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR-VDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.+++|+|++ .+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~pdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHKDS--LLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECTTS--CEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECCCC--CEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 999998854 89999999999999999998877 67777 899999999999999999987 3379999999988
Q ss_pred eEEEecC---ccCcce--EEEEEeCCCCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc---CCCEEEE
Q 001160 579 IKRTYSG---FRKRSL--GVVQFDTTRNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK---EGSLLAV 649 (1134)
Q Consensus 579 ~~~~~~~---~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~ 649 (1134)
.+..+.. +.. .+ .+++|+|+++++++++. |+.|++|++.+....... .++..++|.+ ++..+++
T Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 247 GTLAYPTYTIPEF-KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp TCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred cceeecccccccc-cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence 7665554 222 33 36999999999999988 999999999765433332 2456778888 8889999
Q ss_pred EeCCCcEEEEECC
Q 001160 650 TTSDNGIKILANS 662 (1134)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1134)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999988543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-26 Score=242.26 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=195.8
Q ss_pred eEEEEecCCC-----CeeEEEEec-CCCeE-EEEEeCCCcEEEEEccCc---cccccccceeeccccccccccccccccC
Q 001160 338 TVVRTLNQGS-----NVMSMDFHP-QQQTI-LLVGTNVGDISLWEVGSR---ERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 338 ~~~~~l~h~~-----~V~~v~~sp-dg~~l-lasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
+++..++... .+.++-|-. ..+.+ +++++ ...|++|+..++ +++++ ...|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~-------------------~~~~ 85 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYT-------------------WHFA 85 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEE-------------------EECC
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEE-------------------Eecc
Confidence 4455555322 244555533 34333 34444 689999999998 55543 3345
Q ss_pred CcCeEEEEEcCCCCEEEEE-eCC-CeEEEEEcC--CC-CccceeeEEecccCCeeEEEEecCCCcEEEEEEc--CCCcEE
Q 001160 408 AISVNRCVWGPDGLMLGVA-FSK-HIVHLYTYN--PT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG--DDKMIK 480 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~-~~d-g~i~iwd~~--~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~ 480 (1134)
+.+|..++++||-.-|++. -.+ ..-.++-+. .. +...+...-.+|...|..+ ++++ ++.+++ .|+.|+
T Consensus 86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 86 EVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVE 160 (356)
T ss_dssp SSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEE
T ss_pred CceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEE
Confidence 5566666666643322211 000 000111110 00 0011111112333334333 4454 455533 689999
Q ss_pred EEEC-CCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecCCeEEEEEccCCCceeEecCCCC---cEEEEEECCCCCE
Q 001160 481 VWDV-VAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN---WCTMMAYSADGTR 555 (1134)
Q Consensus 481 iwd~-~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~ 555 (1134)
+|++ .+|+.+..+.+|...+..++|++ .+++.+|++++.|++|++||+.+++....+..+.. .+.+++|+|+|++
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLL 240 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCE
Confidence 9999 45888888889999999999999 67779999999999999999999999888876543 6778899999999
Q ss_pred EEEEee--------CCCCCCcEEEEeCCCCeeEEEe-----cCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 556 LFSCGT--------SKEGESHLVEWNESEGAIKRTY-----SGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 556 l~~~~~--------~~~~~~~i~~wd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
+++++. .+..|++|++||..+++.+..+ .+|.. .+.+..+ ++..+++++.|++|+|||+.+++.
T Consensus 241 lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~-~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 241 FIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG-RFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp EEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC-CEEEEEE--ETTEEEEEETTSCEEEEETTTCSE
T ss_pred EEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc-eeEcccc--CCCEEEEEcCCCcEEEEECCCCcE
Confidence 866442 2235889999999999988765 35544 3433344 378899999999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.++.+|... .+..++|+|||++|++|+.|++|+|||.
T Consensus 318 l~tL~gH~~~-vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQ-HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECCC--C-CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCC-eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999866431 3446899999999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=271.13 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=201.8
Q ss_pred CCCeeEEEE---ecCCCeEEEEEeCCCcEEEEEccCcccccc-----ccceeeccccccc-----cccccccccCCcCeE
Q 001160 346 GSNVMSMDF---HPQQQTILLVGTNVGDISLWEVGSRERLAH-----KPFKVWDISAASM-----PLQNALLNDAAISVN 412 (1134)
Q Consensus 346 ~~~V~~v~~---spdg~~llasg~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~l~~h~~~V~ 412 (1134)
+....++.| +|++..++++|. ++.|.+|+......... .....+....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345667777 456655777664 88899998753322111 0111111110000 000111234555556
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc--eeeEEecccCCeeEEEEec--------CCCcEEEEEEcCCCcEEEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAH--------PNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~--------d~~~~~l~sg~~d~~i~iw 482 (1134)
...+++++.+||+|+.|++|++||+.+++... ....+.+|.+.|++++|+| |++ +|++|+.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66667788899999999999999999876532 2234679999999999998 777 89999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-------------------------e
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-------------------------Y 537 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------------------~ 537 (1134)
|+.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||+.+++.... .
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 999998888888999999999999864 25899999999999999987654322 1
Q ss_pred cCCCCcEEEEEEC-CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEE------------------EEEeC
Q 001160 538 DAPGNWCTMMAYS-ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------------------VQFDT 598 (1134)
Q Consensus 538 ~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~------------------~~~~~ 598 (1134)
..+...+.++.|+ ++++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 3455577888886 89999999874 78899999988776666554432 2222 22333
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 599 --TRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 599 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
++.++++|+.||.|++||+.+++....+..+. ..|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 23356668899999999999998887776654 3799999999999999998775 556654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=264.88 Aligned_cols=267 Identities=8% Similarity=0.025 Sum_probs=169.6
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE-----EEecCccCcceEEEEEeC--------CCCEEEEE
Q 001160 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK-----RTYSGFRKRSLGVVQFDT--------TRNRFLAA 606 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~ 606 (1134)
+........+++++.++++++. |++|++||.+++... ..+.+|.+ .|++++|+| |+++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~----d~~v~lw~~~~~~~~~~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQ----DNTVRLIITKNETIITQHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---------CCEEEEEEEEEET----TSCEEEEEEETTEEEEEEEECTTTSCSS-CEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEEeC----CCcEEEEECCCCccceeeeecccCCCCC-ceEEEEEccccccccCCCCCEEEEE
Confidence 3344455567778888888874 888999999988653 34678877 899999998 78999999
Q ss_pred eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC-EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCC
Q 001160 607 GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS-LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1134)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1134)
+.|++|++||+.++.++..+..+. ..+.+++|+|++. +|++++.|++|++||+.+++. ......+...
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~-~~~~~~~~~~-------- 231 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS-AEENSQTELV-------- 231 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------C--------
T ss_pred ECCCeEEEEECCCCceeeeecCCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc-cccccccCCc--------
Confidence 999999999999888777766553 4789999999874 899999999999999988732 2221111100
Q ss_pred CCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEee
Q 001160 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1134)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1134)
T Consensus 232 -------------------------------------------------------------------------------- 231 (393)
T 4gq1_A 232 -------------------------------------------------------------------------------- 231 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 766 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
+...+......+... .. ... .| ...+.+
T Consensus 232 -----~~~~~~s~~~~~~~~----~~----------------------------------------~~~--~~-~~~v~~ 259 (393)
T 4gq1_A 232 -----KNPWLLTLNTLPLVN----TC----------------------------------------HSS--GI-ASSLAN 259 (393)
T ss_dssp -----SCCCSEEEESGGGC----------------------------------------------------CC-SSSCSE
T ss_pred -----ccceEEeccccccee----ee----------------------------------------ecc--cc-ccccee
Confidence 000000000000000 00 000 13 555556
Q ss_pred EEec-cCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceE-------------------EEEEcCCCCcEEEEEeCCC
Q 001160 846 IALS-KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAAT-------------------FLAFHPQDNNIIAIGMEDS 904 (1134)
Q Consensus 846 ~~~s-~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-------------------~l~~s~~~~~~lasg~~dg 904 (1134)
++|+ +|++.+++++ |+++++||+.+++....+..|...+. ++.+.+.++.++++|+.||
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg 339 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG 339 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence 6654 5666666666 66666666665554444444433332 3333333455778889999
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+|++||+.+++.+..+.+|..+|.+++|+|||++||+++.|| +.+|.+..
T Consensus 340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 999999999998888888999999999999999999999776 77776654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-26 Score=266.64 Aligned_cols=345 Identities=11% Similarity=0.157 Sum_probs=257.9
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeeEEE
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM--DNMNMLTT 625 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~ 625 (1134)
+++|++..++++.. ++.|.+||..+++++.++.... .+.+++|+|+|+++++++.|+.|++||+ .+++.+..
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~ 217 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE 217 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE
Confidence 37888877777653 7889999999999999998544 3788999999999999999999999999 88888888
Q ss_pred EeCCCCCCCcceEEEcc----CCCEEEEEeC-CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCc
Q 001160 626 VDADGGLPASPRLRFNK----EGSLLAVTTS-DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPAS 700 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s~----d~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1134)
+... ..+..++|+| ||+++++++. +++|.+||..++ +.++.+..+....
T Consensus 218 i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-~~~~~i~~~g~~~---------------------- 271 (543)
T 1nir_A 218 IKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTV---------------------- 271 (543)
T ss_dssp EECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECS----------------------
T ss_pred EecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-ccceeecccCccc----------------------
Confidence 8743 2568999999 9999998885 899999998876 3333332211000
Q ss_pred ccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc-ccceEEEE
Q 001160 701 NVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA-ASKVVRLI 779 (1134)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 779 (1134)
. .. ..| ...+..+.
T Consensus 272 ----------------------------------------------------~----~~---------~~~~~~~v~~i~ 286 (543)
T 1nir_A 272 ----------------------------------------------------D----TQ---------TYHPEPRVAAII 286 (543)
T ss_dssp ----------------------------------------------------S----SC---------CEESCCCEEEEE
T ss_pred ----------------------------------------------------C----cc---------ccccCCceEEEE
Confidence 0 00 002 23678999
Q ss_pred EecCCcce-EEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccc-cccCCCCCCCCceEEEEeccCCCEEEE
Q 001160 780 YTNSGLSL-LALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMT-NDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 780 ~s~~g~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
++|++..+ ++...++.|.+||+...+. +. ..+. + ...+..++|+|||+++++
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~----------------------l~~~~i~---~-~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDN----------------------LTVTSIG---A-APFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSS----------------------CEEEEEE---C-CSSCCCEEECTTSCEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCc----------------------ceeEEec---c-CcCccCceECCCCCEEEE
Confidence 99987665 4555679999998753211 00 0011 2 445678999999998876
Q ss_pred Ee--CCeEEEEECCCCeEEEEecC----CCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCC-------ceEEEEecCc
Q 001160 858 AS--GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRV-------DEVKTKLKGH 923 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~-------~~~~~~l~~h 923 (1134)
++ +++|.+||+.+++++..+.. |.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|
T Consensus 341 a~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 341 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred EecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 65 78999999999999988874 55444443 5774577788775 689999999998 8999999999
Q ss_pred ccceEEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCe
Q 001160 924 QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
.+.+..++++||+++|++++ .+++|.+||+.+++..... +.
T Consensus 420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~------------------------------- 467 (543)
T 1nir_A 420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-LP------------------------------- 467 (543)
T ss_dssp CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-EC-------------------------------
T ss_pred CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-ee-------------------------------
Confidence 99999999999999999987 2679999999987732100 00
Q ss_pred EEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCcceeeecCCc
Q 001160 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF-----CDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-----~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
+..+.....+...+..+.|+|||+.|+++. .|+.|.|||..|++++.++...
T Consensus 468 ----------v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 468 ----------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp ----------HHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ----------chhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 011111122357889999999999988763 4799999999999999988743
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=263.41 Aligned_cols=323 Identities=12% Similarity=0.124 Sum_probs=251.8
Q ss_pred EecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEc--cCCCceeEec
Q 001160 461 FAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLY--DYLGSRVDYD 538 (1134)
Q Consensus 461 ~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~ 538 (1134)
|+|++. ++++++.|++|.+||..+++++.++..+.. +.+++|+|++ ++|++++.|++|++||+ .+.+....+.
T Consensus 145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg--~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS--CEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC--CEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 778886 889999999999999999999999984333 8899998754 89999999999999999 7766666666
Q ss_pred CCCCcEEEEEECC----CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc----------cCcceEEEEEeCCCCEEE
Q 001160 539 APGNWCTMMAYSA----DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF----------RKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 539 ~~~~~v~~~~~s~----~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~ 604 (1134)
....+..++|+| ||+++++++. .+++|.+||..+++++.++..+ ....+..+.++|++..++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 456789999999 9999998874 3678999999999999888753 233688899999876655
Q ss_pred -EEeCCCeEEEEECCCCeeEE--EEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 605 -AAGDEFQIKFWDMDNMNMLT--TVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 605 -~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
+...++.|.+||+.+.+.+. .+.. ...+..++|+|+|+++++++ .+++|.+||..++ ++...+...
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g------ 365 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVG------ 365 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECS------
T ss_pred EEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccC------
Confidence 56689999999998876544 4432 23578899999999876655 5889999999877 221111000
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 366 -------------------------------------------------------------------------------- 365 (543)
T 1nir_A 366 -------------------------------------------------------------------------------- 365 (543)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTE 840 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~ 840 (1134)
. ..| .
T Consensus 366 ------------------------~--------------------------------------------------~ph-~ 370 (543)
T 1nir_A 366 ------------------------K--------------------------------------------------TPH-P 370 (543)
T ss_dssp ------------------------S--------------------------------------------------SBC-C
T ss_pred ------------------------C--------------------------------------------------CCC-C
Confidence 0 002 2
Q ss_pred CceEEEEeccC-CCEEEEEe--CCeEEEEECCC-------CeEEEEecCCCCceEEEEEcCCCCcEEEEEe-------CC
Q 001160 841 ESAACIALSKN-DSYVMSAS--GGKVSLFNMMT-------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-------ED 903 (1134)
Q Consensus 841 ~~i~~~~~s~d-g~~la~~s--dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-------~d 903 (1134)
+....+ ++|+ |.+++++. |++|.|||+.+ +++++++.+|...+..++|+| ++++|++++ .+
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHH
T ss_pred CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccC
Confidence 222222 3565 55666664 68899999888 899999999998999999999 899999887 27
Q ss_pred CcEEEEEcCCceEE-EEe--------cCcccceEEEEEecCCCEEEEE-----cCCCcEEEEeCCCcccc
Q 001160 904 SSVQIYNVRVDEVK-TKL--------KGHQNRITGLAFSPTLNALVSS-----GADAQLCMWSIDKWEKL 959 (1134)
Q Consensus 904 g~i~iwd~~~~~~~-~~l--------~~h~~~i~~l~~s~d~~~l~s~-----~~D~~i~iWd~~~~~~~ 959 (1134)
++|.|||+.+++.. ..+ ..+...+..++|+|||+.|+.+ +.|+.|.|||.++++.+
T Consensus 449 ~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 449 QSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp TCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 79999999998876 443 4567889999999999988865 24799999999998854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=246.16 Aligned_cols=284 Identities=8% Similarity=0.024 Sum_probs=219.9
Q ss_pred CCeeEEEEecCCCeEEEEEe----CCC----cEEEEEc--cCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGT----NVG----DISLWEV--GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999988888886 467 8999999 8887653211 3456666666666
Q ss_pred cC--------------CCCEEEEEeCC------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC
Q 001160 417 GP--------------DGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD 476 (1134)
Q Consensus 417 sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d 476 (1134)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 54 26677776654 799999998543 33 6678999999999999999 78888877
Q ss_pred C---cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEE-EEecCCe--EEEEEccCCCceeEecCCCCcEEEEEEC
Q 001160 477 K---MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-STAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYS 550 (1134)
Q Consensus 477 ~---~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 550 (1134)
+ .|++||+.+++.. .+..|...+.+++|+|++ ..|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999998875 566788899999998865 7666 6666654 99999987654 5566677889999999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeeEEEEe
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE---FQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 627 (1134)
|||++|++++. .++...|++||+.+++. ..+..+.. .+.+++|+|+|++|++++.+ ..|++||+.+++.. .+.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~-~~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAP-QRITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCC-EECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCE-EEEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 99999998773 22344788999988774 33444444 78899999999999987754 58999999988764 333
Q ss_pred CCCCCCCcceEEEccCCCEEEEEeCCC---cEEEEECCCc
Q 001160 628 ADGGLPASPRLRFNKEGSLLAVTTSDN---GIKILANSDG 664 (1134)
Q Consensus 628 ~~~~~~~v~~~~~s~d~~~l~~~~~dg---~i~iw~~~~~ 664 (1134)
.+ . .+.+++|+|||++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 32 2 688999999999999988877 7999998644
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-24 Score=243.17 Aligned_cols=306 Identities=14% Similarity=0.150 Sum_probs=231.1
Q ss_pred cCCeeEEEEecCCCcEEEEEEc----CCC----cEEEEEC--CCCeee--EEecCCCCCeEEEEeeccC-----------
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCG----DDK----MIKVWDV--VAGRKQ--YTFEGHEAPVYSVCPHHKE----------- 509 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~i~~~~~~----------- 509 (1134)
...+...+|.+.|.. ++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++.+..
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346788889998876 676775 567 8999999 899887 4588898888877766420
Q ss_pred -CccEEEEEecC------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 510 -SIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 510 -~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.+. ++..|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 13566666654 7999999974 44566667788999999999999999987532 2468999999998875 4
Q ss_pred ecCccCcceEEEEEeCCCCEEE-EEeCCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-CC--cE
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFL-AAGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-DN--GI 656 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-dg--~i 656 (1134)
+..+.. .+.+++|+|||+.|+ +++.++ .|++||+.+++. ..+..+ ...+.+++|+|||++|++++. ++ .|
T Consensus 218 l~~~~~-~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 218 VASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EECCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eecCCC-cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEE
Confidence 555555 789999999999888 555554 499999998876 344433 346889999999999988876 44 45
Q ss_pred EEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccc
Q 001160 657 KILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDV 736 (1134)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1134)
.+||+.++. .
T Consensus 294 ~~~d~~~~~-~--------------------------------------------------------------------- 303 (415)
T 2hqs_A 294 YKVNINGGA-P--------------------------------------------------------------------- 303 (415)
T ss_dssp EEEETTSSC-C---------------------------------------------------------------------
T ss_pred EEEECCCCC-E---------------------------------------------------------------------
Confidence 555654431 0
Q ss_pred ccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCccccc
Q 001160 737 KPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANV 816 (1134)
Q Consensus 737 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 816 (1134)
..
T Consensus 304 -------------------------~~----------------------------------------------------- 305 (415)
T 2hqs_A 304 -------------------------QR----------------------------------------------------- 305 (415)
T ss_dssp -------------------------EE-----------------------------------------------------
T ss_pred -------------------------EE-----------------------------------------------------
Confidence 00
Q ss_pred CcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-C---CeEEEEECCCCeEEEEecCCCCceEEEEEcCC
Q 001160 817 APQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G---GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 817 ~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 892 (1134)
+.. | ...+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+|
T Consensus 306 ----------------l~~--~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp- 363 (415)
T 2hqs_A 306 ----------------ITW--E-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP- 363 (415)
T ss_dssp ----------------CCC--S-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-
T ss_pred ----------------Eec--C-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-
Confidence 000 2 44566788888888888776 3 47999999988774 455554 899999999
Q ss_pred CCcEEEEEeCCC---cEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 893 DNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 893 ~~~~lasg~~dg---~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
++++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|...
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 899998888877 79999987 556778999999999999999654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=260.63 Aligned_cols=303 Identities=13% Similarity=0.094 Sum_probs=213.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeC-CC-----cEEEEEccCccccccccceeec-----cccccccc-cccccccCCcCeEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTN-VG-----DISLWEVGSRERLAHKPFKVWD-----ISAASMPL-QNALLNDAAISVNR 413 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~h~~~V~~ 413 (1134)
...|++++|||||+ .|++++. || .|.+||+.+++........... +....... ....+ .....|.+
T Consensus 36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCC
T ss_pred CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCcce
Confidence 35799999999998 4666666 87 9999999988754321100000 00000000 00000 00134889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCC--ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE
Q 001160 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTG--ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491 (1134)
Q Consensus 414 i~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~ 491 (1134)
++|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|+|||+ +|+.++ ++.|++||+.+++...
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999999987 999999999872 233 4556888899999999999 777776 5699999999988765
Q ss_pred EecCCCCC----------------eEEEEeeccCCccEEEEEecCC---------------------------------e
Q 001160 492 TFEGHEAP----------------VYSVCPHHKESIQFIFSTAIDG---------------------------------K 522 (1134)
Q Consensus 492 ~~~~h~~~----------------v~~i~~~~~~~~~~l~s~~~d~---------------------------------~ 522 (1134)
....+... +.+++|+|++ ++|++++.|+ .
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 54444432 4678897754 8888887765 8
Q ss_pred EEEEEccC-CCceeEec--CCCCcEEEEEECCCCCEEEEEeeC-CCCCCcEEEEeCCCCeeEEEecCccCc---ceEEEE
Q 001160 523 IKAWLYDY-LGSRVDYD--APGNWCTMMAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKR---SLGVVQ 595 (1134)
Q Consensus 523 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~ 595 (1134)
|.+||+.+ ++...... .+...+..++| |||++|++.+.+ ...+..|++||+.+++....+..+... .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 89999987 66544332 35668999999 999999977642 234678999999999887777655432 245789
Q ss_pred EeCCCCEEEEEeCCCeEEEEECC-CCeeEEEEeCCCCCCCcceE-EEccCCCEEEEEeC-CC--cEEEEECCC
Q 001160 596 FDTTRNRFLAAGDEFQIKFWDMD-NMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTS-DN--GIKILANSD 663 (1134)
Q Consensus 596 ~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~~~~~-dg--~i~iw~~~~ 663 (1134)
|+|||+++++++.+|.+++|.++ ++. ...+..+ ...+..+ .|+|||+.|+..+. ++ .+++|++..
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999988888899988888765 344 5555433 3356676 59999997765544 44 889998753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=257.51 Aligned_cols=328 Identities=10% Similarity=0.013 Sum_probs=238.2
Q ss_pred cCCeeEEEEecCCCcEEEEEEcC-CC-----cEEEEECCCCeeeEEecCCCCC------------------------eEE
Q 001160 453 VGGVNDIAFAHPNKQLCIVTCGD-DK-----MIKVWDVVAGRKQYTFEGHEAP------------------------VYS 502 (1134)
Q Consensus 453 ~~~v~~l~~s~d~~~~~l~sg~~-d~-----~i~iwd~~~~~~~~~~~~h~~~------------------------v~~ 502 (1134)
...+.+++|+|||+ +|++++. |+ .|++||+.+++....+..+... |.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 44689999999999 7888887 88 8999999999887776654333 788
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCC--ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLG--SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
++|+|++ ++|++++. +.|++||+.++. ....+..+...+..++|+|||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~SpDg--~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQWSPDA--QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEECTTS--SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEECCCC--CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 8998754 88888886 999999998873 4445666677899999999999999886 447999999998876
Q ss_pred EEecCccCc---------------ceEEEEEeCCCCEEEEEeCCC---------------------------------eE
Q 001160 581 RTYSGFRKR---------------SLGVVQFDTTRNRFLAAGDEF---------------------------------QI 612 (1134)
Q Consensus 581 ~~~~~~~~~---------------~v~~~~~~~~~~~l~~~~~dg---------------------------------~i 612 (1134)
.....+... .+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 654443321 146799999999999987665 88
Q ss_pred EEEECCC-CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC-----CCcEEEEECCCchhhhhhhcCCcccccCCCCCCC
Q 001160 613 KFWDMDN-MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS-----DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPI 686 (1134)
Q Consensus 613 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1134)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.++. ...
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~----------------- 326 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRV----------------- 326 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEE-----------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEE-----------------
Confidence 9999988 776554332223446889999 99999987764 4567777765541 000
Q ss_pred CCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeec
Q 001160 687 SSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766 (1134)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~ 766 (1134)
T Consensus 327 -------------------------------------------------------------------------------- 326 (741)
T 2ecf_A 327 -------------------------------------------------------------------------------- 326 (741)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEE
Q 001160 767 PDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1134)
Q Consensus 767 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1134)
+.....++ . ...+.++
T Consensus 327 --------------------~~~~~~~~-------------------------------------------~-~~~~~~~ 342 (741)
T 2ecf_A 327 --------------------LAHETSPT-------------------------------------------W-VPLHNSL 342 (741)
T ss_dssp --------------------EEEEECSS-------------------------------------------C-CCCCSCC
T ss_pred --------------------EEEcCCCC-------------------------------------------c-CCcCCce
Confidence 00000000 0 1123457
Q ss_pred EeccCCCEEEEEe-CCeEEEEECC-CCeEEEEecCCCCceEEE-EEcCCCCcEEE-EEeCCC--cEEEEEcCC-ceEEEE
Q 001160 847 ALSKNDSYVMSAS-GGKVSLFNMM-TFKVMTMFMSPPPAATFL-AFHPQDNNIIA-IGMEDS--SVQIYNVRV-DEVKTK 919 (1134)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~s~~~~~~la-sg~~dg--~i~iwd~~~-~~~~~~ 919 (1134)
+|+|||+++++++ +|.++||.++ +++ ...+..|...+..+ .|+| +++.|+ +++.++ .++||++.. ++....
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 8889998777777 7766666654 345 67787788888887 5999 777654 555555 899999874 555666
Q ss_pred ecCcccceEEEEEecCCCEEEEEcCC----CcEEEEeCCCc
Q 001160 920 LKGHQNRITGLAFSPTLNALVSSGAD----AQLCMWSIDKW 956 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~d~~~l~s~~~D----~~i~iWd~~~~ 956 (1134)
+.. ...+.+++|||||++|+....+ ..+.+|+..++
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 765 6678899999999988876544 46889988654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=259.06 Aligned_cols=288 Identities=10% Similarity=0.082 Sum_probs=210.8
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc---CeEEEEEcCCCCEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLG 424 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~i~~spdg~~la 424 (1134)
.+.+++|||||+ ++++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 577899999998 5665 6799999999999875432 334443 499999999999999
Q ss_pred EEeCC---------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 425 VAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 425 s~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
+++.+ +.+.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999998865 22222234555689999999999 6777774 7999999999887766655
Q ss_pred CCCCe------------------EEEEeeccCCccEEEEEecCC----------------------------------eE
Q 001160 496 HEAPV------------------YSVCPHHKESIQFIFSTAIDG----------------------------------KI 523 (1134)
Q Consensus 496 h~~~v------------------~~i~~~~~~~~~~l~s~~~d~----------------------------------~i 523 (1134)
+...+ .+++|+|++ +.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 789998755 8888887653 79
Q ss_pred EEEEccCCCceeEecCC------CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce----EE
Q 001160 524 KAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL----GV 593 (1134)
Q Consensus 524 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v----~~ 593 (1134)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999887765555543 557899999999998877665444467899999999987776654433233 37
Q ss_pred EEEeCCCCEEEE--EeCCC------eEEEEE-CCCCee--EEEEeCCCCCCCcce-EEEccCCCEEEEEeCC---CcEEE
Q 001160 594 VQFDTTRNRFLA--AGDEF------QIKFWD-MDNMNM--LTTVDADGGLPASPR-LRFNKEGSLLAVTTSD---NGIKI 658 (1134)
Q Consensus 594 ~~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-~~~s~d~~~l~~~~~d---g~i~i 658 (1134)
++|+|||+.|+. +..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 899999997775 34666 577777 444441 3333321 123343 6899999999876665 78999
Q ss_pred EECCCc
Q 001160 659 LANSDG 664 (1134)
Q Consensus 659 w~~~~~ 664 (1134)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 987643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=254.11 Aligned_cols=385 Identities=11% Similarity=0.065 Sum_probs=251.5
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc--ceEEEEEeCCCCEEEEEeCC---------Ce
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR--SLGVVQFDTTRNRFLAAGDE---------FQ 611 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 611 (1134)
.+.+++|+|||+++++ + .++.|++||+.+++....+..+... .+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997765 3 3678999999999988877766531 38899999999999998764 78
Q ss_pred EEEEECCCCeeEEEEeC-CCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 612 IKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 612 i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++ +..+....+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g-~~~~~~~~~~~~~------------ 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK-QAIRVVSTGKEGV------------ 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS-CCEEEECCCBTTT------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC-ceEEEecCCCCCc------------
Confidence 89999999876 33332 222334788999999999999886 79999999876 2221111110000
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcc
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
+..+ +.-|-.++ .
T Consensus 158 ------------------------------------------------~~~g----~~~~v~~e---------------e 170 (723)
T 1xfd_A 158 ------------------------------------------------IYNG----LSDWLYEE---------------E 170 (723)
T ss_dssp ------------------------------------------------EEEE----ECCHHHHH---------------T
T ss_pred ------------------------------------------------eECc----ccceeEEE---------------E
Confidence 0000 00000000 0
Q ss_pred cccceEEEEEecCCcceEEeecc-CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 771 AASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
-...+.+++|||||+.|+.++.+ +.+.+|++.... + .+ ...+..+.|+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~~-~~~~~~~~~~ 219 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------SI-YPTVKPYHYP 219 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------SS-SCCCEEEECC
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------cC-CCcceeccCC
Confidence 01235789999999999888765 466777653100 0 01 3357888999
Q ss_pred cCCCEEEEEeCCeEEEEECCCCeEEEEecCC------CCceEEEEEcCCCCcEEEEEeC----CCcEEEEEcCCceEEEE
Q 001160 850 KNDSYVMSASGGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 850 ~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~lasg~~----dg~i~iwd~~~~~~~~~ 919 (1134)
++|.. ..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++||+.++++...
T Consensus 220 ~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88863 12468999999998865666654 56789999999 8988877653 35799999999987766
Q ss_pred ecCc-ccce----EEEEEecCCCEEEEE--cCCC------cEEEEe-CCCcccccceeeecCCCCCCCCcCceE-EEECC
Q 001160 920 LKGH-QNRI----TGLAFSPTLNALVSS--GADA------QLCMWS-IDKWEKLKSRFIQAPAGRQSPLVGETK-VQFHN 984 (1134)
Q Consensus 920 l~~h-~~~i----~~l~~s~d~~~l~s~--~~D~------~i~iWd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~fsp 984 (1134)
+..+ ...+ ..++|||||+.|+.. ..++ .|.+|| ..+++......+. .++ ..+.. ++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~----~~~~~~~~~sp 369 (723)
T 1xfd_A 296 HEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD----WDVTKILAYDE 369 (723)
T ss_dssp EEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS----SCEEEEEEEET
T ss_pred EEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCC----eEEEeeeEEcC
Confidence 6443 3333 378999999987754 4566 567777 3443300001111 111 23444 69999
Q ss_pred CCcEEEE-EEC---CeEEEEeCC--Cc-ceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCcceeee
Q 001160 985 DQTHLLV-VHE---SQISVYDSK--LE-CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-G--AIGVFDAETLRFRCR 1054 (1134)
Q Consensus 985 dg~~l~~-~~d---~~v~vwd~~--~~-~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-g--~I~vwd~~~~~~~~~ 1054 (1134)
||++|+. +.+ +.+.+|++. +. ....+.....|...+..++|||||++|+..... + ...+++..++..+..
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 9999987 443 678999983 22 222232211246778999999999988765432 2 244556666655443
Q ss_pred c
Q 001160 1055 I 1055 (1134)
Q Consensus 1055 ~ 1055 (1134)
+
T Consensus 450 ~ 450 (723)
T 1xfd_A 450 L 450 (723)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-21 Score=217.29 Aligned_cols=281 Identities=10% Similarity=0.077 Sum_probs=207.6
Q ss_pred EEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC-CC
Q 001160 352 MDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-KH 430 (1134)
Q Consensus 352 v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~-dg 430 (1134)
..|.+++..++++++.++.|.+||..+++.+.. +..+...+ +++|+|||+++++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999876543 22344556 9999999997777665 89
Q ss_pred eEEEEEcCCCCc-cceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-C--cEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 431 IVHLYTYNPTGE-LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-K--MIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 431 ~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
.|.+||..+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999998875 33 4555666666699999999 66655544 3 8999999999988887644 456899998
Q ss_pred ccCCccEEEEEecCCe-EEEEEccCCCcee----EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--
Q 001160 507 HKESIQFIFSTAIDGK-IKAWLYDYLGSRV----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI-- 579 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~-- 579 (1134)
|++. .++++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 pdg~-~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 137 PNGN-GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp TTSS-CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred CCCC-EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 8652 24555566688 9999998655432 22234456899999999998776653 477899999999888
Q ss_pred -EEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCee--EEEEeCC--CCCCC---cceEEEccCCCEEEEE
Q 001160 580 -KRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNM--LTTVDAD--GGLPA---SPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 580 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~~---v~~~~~s~d~~~l~~~ 650 (1134)
+..+.... .+..++|+|+|+++++++ .++.|.+||+.+++. +..+... ..... ...++|+|||++|+++
T Consensus 213 ~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTNN--LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECSS--CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCCC--CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 77776543 577899999999877654 578899999999887 4444322 11112 2458999999988766
Q ss_pred eC-CCcEEEEECCCc
Q 001160 651 TS-DNGIKILANSDG 664 (1134)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1134)
+. ++.|.+||+.+.
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 55 669999999765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-22 Score=245.39 Aligned_cols=358 Identities=11% Similarity=0.083 Sum_probs=233.1
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCC-----------------CCeEEEEeeccCCccEEEEE
Q 001160 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHE-----------------APVYSVCPHHKESIQFIFST 517 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~i~~~~~~~~~~l~s~ 517 (1134)
+..+.|. |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+|+ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5667888 55 466666777 8 9999999873 4443333 56999999886 244444
Q ss_pred ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-----CeeEEEecCccCcc--
Q 001160 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-----GAIKRTYSGFRKRS-- 590 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~~~-- 590 (1134)
.++.|++||+.+++.. .+..+...+.+++|+|||++|+++. ++.|++||+.+ ++.......+....
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3444566788899999999999863 57899999998 77665444433311
Q ss_pred -----------eEEEEEeCCCCEEEEEe---------------------------------CCCeEEEEECCCCeeEEEE
Q 001160 591 -----------LGVVQFDTTRNRFLAAG---------------------------------DEFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 591 -----------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1134)
+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987 4478999999998865544
Q ss_pred eCCCCCCCcceEEEccCCCEEEEEeCCC-----cEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcc
Q 001160 627 DADGGLPASPRLRFNKEGSLLAVTTSDN-----GIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASN 701 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1134)
....+...+..++|+|||+.|++++.++ .|++||+.++.. ...+.....
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~------------------------- 305 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETD------------------------- 305 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEEC-------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccC-------------------------
Confidence 3323334688999999999999887765 899999877621 111100000
Q ss_pred cccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEe
Q 001160 702 VSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYT 781 (1134)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 781 (1134)
......+..++|+
T Consensus 306 -------------------------------------------------------------------~~~~~~~~~~~~s 318 (706)
T 2z3z_A 306 -------------------------------------------------------------------KHYVEPLHPLTFL 318 (706)
T ss_dssp -------------------------------------------------------------------SSCCCCCSCCEEC
T ss_pred -------------------------------------------------------------------CCeECccCCceee
Confidence 0001123567899
Q ss_pred c--CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE-EEeccCCCEEEEE
Q 001160 782 N--SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC-IALSKNDSYVMSA 858 (1134)
Q Consensus 782 ~--~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~-~~~s~dg~~la~~ 858 (1134)
| ||++++++..++.+++|.+.. ++..... +.. | ...+.. ++|+|||+.|+.+
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~---------------------~~~~~~~-l~~--~-~~~v~~~~~~spdg~~l~~~ 373 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDT---------------------TGRLIRQ-VTK--G-EWEVTNFAGFDPKGTRLYFE 373 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEET---------------------TSCEEEE-CCC--S-SSCEEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEccCCccEEEEEEC---------------------CCCEEEe-cCC--C-CeEEEeeeEEcCCCCEEEEE
Confidence 9 999888888899999997641 1111111 111 3 566766 8999999988776
Q ss_pred e--CC----eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC----CcEEEEEcCCceEEEEecCcccceE
Q 001160 859 S--GG----KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLKGHQNRIT 928 (1134)
Q Consensus 859 s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d----g~i~iwd~~~~~~~~~l~~h~~~i~ 928 (1134)
+ ++ .|..||+.+++ ...+. +...+.+++||| ++++|+.+..+ +.|++||+.+++ ...+. +...+.
T Consensus 374 ~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~ 448 (706)
T 2z3z_A 374 STEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDT 448 (706)
T ss_dssp ESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC----
T ss_pred ecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhh
Confidence 5 44 67777877765 33444 677799999999 88887776443 569999999887 43333 444454
Q ss_pred EEEEecCCCEEEEEcCCC--cEEEEeC
Q 001160 929 GLAFSPTLNALVSSGADA--QLCMWSI 953 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~~D~--~i~iWd~ 953 (1134)
...+.+.. .+-....|+ .+..|-.
T Consensus 449 ~~~~~~~~-~~~~~~~~g~~~~~~~~~ 474 (706)
T 2z3z_A 449 GYAMPEIR-TGTIMAADGQTPLYYKLT 474 (706)
T ss_dssp --CCCCEE-EEEEECTTSSSEEEEEEE
T ss_pred hcCCCCcE-EEEEEcCCCCEEEEEEEE
Confidence 44443332 222233444 4555533
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-21 Score=213.45 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=216.7
Q ss_pred EecCCCCeeEEEEecCCCeEEEEEeC------CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 342 TLNQGSNVMSMDFHPQQQTILLVGTN------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 342 ~l~h~~~V~~v~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.......+..++|+|+|+++++++.. ++.|.+||..+++.+.. +. ....+..++
T Consensus 36 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~ 95 (353)
T 3vgz_A 36 RKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGAT 95 (353)
T ss_dssp EEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEE
T ss_pred hhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEE
Confidence 33445688999999999866555533 67999999998876543 11 234477899
Q ss_pred EcCCCCEEEEE-eCCCeEEEEEcCCCCccceeeEEecccC---------CeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 416 WGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVG---------GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 416 ~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
|+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++.+++...+.++.|.+||+.
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 99999966555 557999999999987654 3333322 2788999999995222222468899999999
Q ss_pred CCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC----CCCcEEEEEECCCCCEEEEEee
Q 001160 486 AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA----PGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 486 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+++.+..+..+...+.+++|+|++ .++++++.++.|.+||+.+.+....+.. +...+..++|+|++++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 999998887666678889998755 7899999999999999998877766554 4556888999999998887753
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 367899999999998888876432 4689999999776655 78999999999999988887543 5689999
Q ss_pred ccCCCEEEEEeCCC
Q 001160 641 NKEGSLLAVTTSDN 654 (1134)
Q Consensus 641 s~d~~~l~~~~~dg 654 (1134)
+|||++|+++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999887776653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=239.64 Aligned_cols=237 Identities=9% Similarity=-0.022 Sum_probs=169.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceeeEEeccc-----------------CCeeEEEEecCCCcEEEEE
Q 001160 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHV-----------------GGVNDIAFAHPNKQLCIVT 472 (1134)
Q Consensus 411 V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~l~~s~d~~~~~l~s 472 (1134)
+..+.|+ |+.+++++.++ | +||+.+++.+ . .+..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 5557888 66777777888 8 9999998763 3 222332 56999999999 5 3444
Q ss_pred EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-----CCceeEecCCCCc----
Q 001160 473 CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-----LGSRVDYDAPGNW---- 543 (1134)
Q Consensus 473 g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~---- 543 (1134)
+ .++.|++||+.+++... +..+...+.+++|+|++ ++|+++ .|+.|++||+.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG--~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVG--DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTS--SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCC--CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 4 35999999999887654 44567788889998855 788884 789999999988 6655433333332
Q ss_pred ----------EEEEEECCCCCEEEEEeeCC-----------------------------CCCCcEEEEeCCCCeeEEEec
Q 001160 544 ----------CTMMAYSADGTRLFSCGTSK-----------------------------EGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 544 ----------v~~~~~s~~~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
+.+++|+|||++|++++.+. ..+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 47899999999999886321 135679999999988665543
Q ss_pred C-ccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEe-CC--CCCCCcceEEEcc--CCCEEEEEeCC
Q 001160 585 G-FRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVD-AD--GGLPASPRLRFNK--EGSLLAVTTSD 653 (1134)
Q Consensus 585 ~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~--~~~~~v~~~~~s~--d~~~l~~~~~d 653 (1134)
. .....+.+++|+|||++|++++.++ .|++||+.+++....+. .. .....+..++|+| ||++++++..+
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~ 332 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRD 332 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccC
Confidence 2 2233789999999999999987665 89999999984333332 11 1112346789999 99999999999
Q ss_pred CcEEEEECC
Q 001160 654 NGIKILANS 662 (1134)
Q Consensus 654 g~i~iw~~~ 662 (1134)
+.+++|.+.
T Consensus 333 g~~~l~~~~ 341 (706)
T 2z3z_A 333 GWNHLYLYD 341 (706)
T ss_dssp SSCEEEEEE
T ss_pred CccEEEEEE
Confidence 999999865
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-21 Score=215.20 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=172.9
Q ss_pred CCceEEEEeccCCCEEEEEe-C-CeEEEEECC--CCe--EEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEc-
Q 001160 840 EESAACIALSKNDSYVMSAS-G-GKVSLFNMM--TFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNV- 911 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~- 911 (1134)
...+.+++|+|||+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 66788899999999999887 4 899999997 554 444555444 789999999 888776665 4889999999
Q ss_pred --CCceEEEEecCcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCC-cccccce--eeecCCCCCCCCcCceEEEECCC
Q 001160 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDK-WEKLKSR--FIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 912 --~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
.+++.+..+..+ ..+.+++|+||+++|++++ .++.|.+||+.+ ++..... ......+ ..+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTT
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECCC
Confidence 444555566544 4588999999999888777 899999999987 5432211 1222122 35788999999
Q ss_pred CcEEEEE--ECCeEEEEeCCC--cce---ecc---CCCCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEeCC--Cc--c
Q 001160 986 QTHLLVV--HESQISVYDSKL--ECS---RSW---SPKDALPAPISSAIYSCDGLLVYA-GFCDGAIGVFDAE--TL--R 1050 (1134)
Q Consensus 986 g~~l~~~--~d~~v~vwd~~~--~~~---~~~---~~~~~h~~~v~~v~~s~dg~~l~~-~~~dg~I~vwd~~--~~--~ 1050 (1134)
|++++++ .++.|.+|++.. ... ... .........+.+++|+|||++|++ +..++.|.+||+. ++ +
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~ 268 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 268 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceE
Confidence 9988764 578999999932 211 111 111122346778999999998774 4478999999998 33 3
Q ss_pred eeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEe-CCCcEEEEecCC
Q 001160 1051 FRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPSD 1101 (1134)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~~~~ 1101 (1134)
.+..+... ..+.+++|+| +|++|++++ .|+.|.+|++..
T Consensus 269 ~~~~~~~~-----------~~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 269 KEGFQPTE-----------TQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEECS-----------SSCCCEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred EeeeecCC-----------CccceEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence 33333211 2256789999 778887777 689999996653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-20 Score=206.38 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=193.8
Q ss_pred CCeEEEEEeCCCcEEEEEccC-ccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC-CeEEEE
Q 001160 358 QQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK-HIVHLY 435 (1134)
Q Consensus 358 g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d-g~i~iw 435 (1134)
++.++++++.|+.|.+||+.. ++.... ....|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 344666668899999999963 321110 012366789999999999999998886 999999
Q ss_pred EcC--CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC---CCeeeEEecCCCCCeEEEEeeccCC
Q 001160 436 TYN--PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV---AGRKQYTFEGHEAPVYSVCPHHKES 510 (1134)
Q Consensus 436 d~~--~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~ 510 (1134)
+++ ++. ......+..+. .+.+++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|+|++
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg- 140 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN- 140 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-
Confidence 998 443 22233444333 7899999999994 33445568899999994 44455555543 458888998754
Q ss_pred ccEEEEEe-cCCeEEEEEccC-CCcee----EecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC--Cee--
Q 001160 511 IQFIFSTA-IDGKIKAWLYDY-LGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE--GAI-- 579 (1134)
Q Consensus 511 ~~~l~s~~-~d~~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~--~~~-- 579 (1134)
.++++++ .++.|++||+.+ ++... .... ....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 141 -~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 141 -RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp -SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred -CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 6777776 899999999987 43321 2222 3457889999999998876652 477899999953 433
Q ss_pred EEEecCcc-----CcceEEEEEeCCCCEEEEE-eCCCeEEEEECC--C--CeeEEEEeCCCCCCCcceEEEccCCCEEEE
Q 001160 580 KRTYSGFR-----KRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMD--N--MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 580 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 649 (1134)
...+.... ...+..++|+|++++++++ ..++.|++||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 1246679999999988754 478999999998 3 34444454432 3789999999998888
Q ss_pred Ee-CCCcEEEEECC
Q 001160 650 TT-SDNGIKILANS 662 (1134)
Q Consensus 650 ~~-~dg~i~iw~~~ 662 (1134)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 87 58999999553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=208.44 Aligned_cols=284 Identities=12% Similarity=0.069 Sum_probs=194.3
Q ss_pred EEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001160 779 IYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 779 ~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
.|.+++.. +++...++.|.+||.. +++....... + ...+ .++|+|||+++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~-~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---G-YDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---C-CCEE-EEEECSSSCEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---c-CCcc-eEEEcCCCCEEEE
Confidence 45555555 5666678999999764 3333222111 2 4455 9999999997777
Q ss_pred Ee--CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCC---cEEEEEcCCceEEEEecCcccceEEEE
Q 001160 858 AS--GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDS---SVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg---~i~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1134)
++ ++.|.+||+.+++. ...+..+..+..+++|+| ++++|+++..++ .|.+||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 68999999999887 777776666666699999 899888655553 8999999999988887754 4568999
Q ss_pred EecCCCEEEEE-cCCCc-EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeC-CCcc
Q 001160 932 FSPTLNALVSS-GADAQ-LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDS-KLEC 1006 (1134)
Q Consensus 932 ~s~d~~~l~s~-~~D~~-i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~-~~~~ 1006 (1134)
|+|||++|+++ ..++. |.+|++.....+.......... ...+..++|+|||++++++ .++.|.+||+ +++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 99999865554 55588 9999998644321111111111 1347899999999977774 4789999999 4555
Q ss_pred ---eeccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcce--eeecCCcccccccccCCCCccEEEeecCC
Q 001160 1007 ---SRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRF--RCRIGPSAYIPTYAVSNTAHPLVIAPHPS 1080 (1134)
Q Consensus 1007 ---~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1134)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+.......... . .....++|+|
T Consensus 211 ~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~sp- 282 (331)
T 3u4y_A 211 ITLLNAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRP-L--FGANQMALNK- 282 (331)
T ss_dssp CEEEEEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGG-G--TTCCCEEECT-
T ss_pred cceeeeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCC-c--ccccceEECC-
Confidence 444432 35678999999999876655 478899999999887 33322110000000 0 1113478999
Q ss_pred CCCEEEEE-eCCCcEEEEecCCCc
Q 001160 1081 EPNQIALG-MSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1081 d~~~l~s~-~~Dg~v~vW~~~~~~ 1103 (1134)
|+++|+++ ..++.|.+|++....
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 67777554 456799999998766
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-21 Score=207.69 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=191.5
Q ss_pred EEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCc
Q 001160 364 VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP-TGE 442 (1134)
Q Consensus 364 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~-~~~ 442 (1134)
.++.|+.|.+||+.+++... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34678999999999876542 345888999999999999999986 78999999998 765
Q ss_pred cceeeEEecc-cCCeeEEEEecCCCcEEEEEEc--CCCcEEEE--ECCCCeeeEEecCCCCCeEEEEeeccCCccEEE-E
Q 001160 443 LRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCG--DDKMIKVW--DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF-S 516 (1134)
Q Consensus 443 ~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s 516 (1134)
.. ...+| ...+.+++|+|+++ +|++++ .++.+.|| ++.+++ ...+..+. .+..++|+|++ ..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg--~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDG--KSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTS--SEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCC--CEEEEE
Confidence 43 33344 46789999999999 677777 33445554 545554 44554443 48889998765 6665 7
Q ss_pred EecCCeEEEEEccCC-CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEE
Q 001160 517 TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVV 594 (1134)
Q Consensus 517 ~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~ 594 (1134)
++.++.+++|+++.. .....+..+...+.+++|+|+++++++++. .++.+.+|++. .+..+..+..+.. .+.++
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~ 222 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFP 222 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCe
Confidence 889999999997543 344556667778999999999999887653 25567888775 4556666766654 78899
Q ss_pred EEeCCCCEEEEEeCC-----------CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 595 QFDTTRNRFLAAGDE-----------FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 595 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
+|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+|++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999987765 569999999887644443222234688999999999998887753
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-20 Score=205.12 Aligned_cols=301 Identities=10% Similarity=0.054 Sum_probs=204.3
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc--
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR-- 587 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-- 587 (1134)
.++++++.++.|.+||+.+.+....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 5789999999999999998877766654332 4788999999998776653 36789999999999887776432
Q ss_pred --CcceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 588 --KRSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 588 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
...+..++|+|+|+++++++ .++.|++||+.+++.+..+... ..+..++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--C
Confidence 11466799999999998886 5799999999999988887653 246889999999988887 6
Q ss_pred CcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccc
Q 001160 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1134)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1134)
+.|.+||+.++ +....+..+... ....++
T Consensus 154 ~~i~~~d~~~~-~~~~~~~~~~~~--------------------------------------------------~~~~~s 182 (337)
T 1pby_B 154 RDLHVMDPEAG-TLVEDKPIQSWE--------------------------------------------------AETYAQ 182 (337)
T ss_dssp SSEEEEETTTT-EEEEEECSTTTT--------------------------------------------------TTTBCC
T ss_pred CeEEEEECCCC-cEeeeeeccccC--------------------------------------------------CCceeC
Confidence 89999999877 322222111000 000122
Q ss_pred ccccccccccc-CccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCc
Q 001160 734 VDVKPRVAEDV-DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKA 812 (1134)
Q Consensus 734 ~~~~~~~~~~~-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 812 (1134)
++++.+..... +....+ +.......++..... .....+.+||
T Consensus 183 ~dg~~l~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~v~~~d------------ 225 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMAT------------------------PFYTARKDIDPADPT-AYRTGLLTMD------------ 225 (337)
T ss_dssp CBCCCCCCCCTTTTEEEE------------------------EEEEEBTTSCTTSGG-GEEEEEEEEE------------
T ss_pred CCccEEeeeccCCCceee------------------------eeecccccccccccc-ccccceEEEe------------
Confidence 23322222111 000000 000000001100000 1111344554
Q ss_pred ccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCC
Q 001160 813 TANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ 892 (1134)
Q Consensus 813 ~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 892 (1134)
..+++.....+.. + ...+.+++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|
T Consensus 226 ----------~~~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~- 289 (337)
T 1pby_B 226 ----------LETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST- 289 (337)
T ss_dssp ----------TTTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-
T ss_pred ----------CCCCCceEeecCC--C-CCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-
Confidence 4444433222222 4 5678899999999999988 79999999999998888764 34678999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCceEEEEecCcc
Q 001160 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 893 ~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
++++|++++.++.|++||+.+++.+..+..+.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 88888888999999999999999888876553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-19 Score=205.28 Aligned_cols=314 Identities=12% Similarity=0.113 Sum_probs=200.8
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..+..+++++++.++++++.++ +++|+......... . ......+...... ..+ .| ...|.+++|+|||
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~--~-~~~~~~~~~~~~~----~~~---~~-~~~v~~l~~spdg 104 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK--P-GDDPNKIVDKVQG----LLV---PM-KFPIHHLALSCDN 104 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC--T-TCCTTCEEECCCC----EEE---CC-SSCEEEEEECTTS
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc--c-ccCcccccccCcc----ccc---cC-CCcccEEEEcCCC
Confidence 4578899999999999988887 88887643211000 0 0000000000000 001 14 6789999999999
Q ss_pred CEEE----EEe-CCeEEEEECCCC--------e---EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001160 853 SYVM----SAS-GGKVSLFNMMTF--------K---VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 853 ~~la----~~s-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
++|| +++ |+.|+|||+.++ + ....+.+|...|.+++|+|+++.+||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998764 1 24567779999999999994489999999999999999999987
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCC-CCCcCceEEEECCCCcEEEEE--E
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQ-SPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
+....+|...|.+++|+|+|++|++++.|++|++||+. ++... .+....... .....+.+++|++++.++++. .
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 77778899999999999999999999999999999998 33221 111111100 001368999999999988773 3
Q ss_pred CC------eEEEEeCCCc------ceeccCCC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcc--e-ee
Q 001160 994 ES------QISVYDSKLE------CSRSWSPK----DALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLR--F-RC 1053 (1134)
Q Consensus 994 d~------~v~vwd~~~~------~~~~~~~~----~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~~~~~--~-~~ 1053 (1134)
+| .+++|++... ....+... .+...+-..+.+-+|.+++++++. .+.|.|+...... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 32 3899999321 11111110 011223333444488887666554 4446666643311 0 01
Q ss_pred ecC--CcccccccccCCCCccEEEeec--CCC------------CCEEEEEeCCCcEEEEecCC
Q 001160 1054 RIG--PSAYIPTYAVSNTAHPLVIAPH--PSE------------PNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1054 ~~~--~~~~~~~~~~~~~~~~~~~~~~--~~d------------~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
.+. ....+|......+..++++++. ..+ --.|.+-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111 1122233323344556655553 211 14677888999999998765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-20 Score=203.58 Aligned_cols=275 Identities=8% Similarity=0.011 Sum_probs=203.8
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc-CeEEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 001160 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI-SVNRCVWGPDGLMLGV-AFSKHIVHLYTYN 438 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~i~~spdg~~las-~~~dg~i~iwd~~ 438 (1134)
++++++.++.|.+||+.+++.+... ..++.. .+.+++|+|||+++++ +..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~------------------~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVI------------------TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEE------------------ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE------------------EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 6788999999999999988765431 011222 4788999999987654 5567899999999
Q ss_pred CCCccceeeEEec---ccCCeeEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeeeEEecCCCCCeEEE
Q 001160 439 PTGELRQHLEIDA---HVGGVNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQYTFEGHEAPVYSV 503 (1134)
Q Consensus 439 ~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~~~l~sg~------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~i 503 (1134)
+++.+... .+.. |...+.+++|+|+|+ ++++++ .++.|.+||+.+++.+..+.. ...+.++
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 88765422 1111 223678899999999 566664 579999999999998877764 4567888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC----------------
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES---------------- 567 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~---------------- 567 (1134)
+|+|++ .+++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+. .++
T Consensus 141 ~~s~dg--~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~---~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 141 AWARDG--SKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE---SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp EECTTS--SCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT---TTTEEEEEEEEEBTTSCTT
T ss_pred EECCCC--CEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeecc---CCCceeeeeeccccccccc
Confidence 887754 667776 68999999998877665554331 112378999987765432 111
Q ss_pred -------cEEEEeCCCCeeEE-EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 568 -------HLVEWNESEGAIKR-TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 568 -------~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
.|.+||+.+++... .+..+.. .+.+++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~ 286 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVN 286 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEE
T ss_pred cccccccceEEEeCCCCCceEeecCCCCC-ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEE
Confidence 47899999987752 2222332 67789999999999888 6899999999999888887542 468999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCchhhhhhhc
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
|+|+|++|++++.++.|.+||+.++ +.+..+.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~ 318 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETL-EKKGQVD 318 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTC-CEEEEEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEE
Confidence 9999999999999999999999888 4444443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=202.60 Aligned_cols=244 Identities=11% Similarity=0.167 Sum_probs=168.0
Q ss_pred CCceEEEEeccCCCEEEEEe---CCeEEEEECCCCe--EEEEecCCCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcC-
Q 001160 840 EESAACIALSKNDSYVMSAS---GGKVSLFNMMTFK--VMTMFMSPPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVR- 912 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~- 912 (1134)
...+..++|+|||+++++.. ++.|.+||+.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45677899999999444443 3789999998766 3444455677889999999 888888877 78999999996
Q ss_pred Cc--eEEEEecC---------cccceEEEEEecCCCEEEEEcCCCcEEEEeCC-CcccccceeeecCCCCCCCCcCceEE
Q 001160 913 VD--EVKTKLKG---------HQNRITGLAFSPTLNALVSSGADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 913 ~~--~~~~~l~~---------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
++ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..+
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~~ 192 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRHL 192 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCceE
Confidence 33 33333322 12348899999999977777778999999998 444221111122222 346789
Q ss_pred EECCCCcEEEEE--ECCeEEEEeCC--Cccee---ccCCCC---CCCCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCc
Q 001160 981 QFHNDQTHLLVV--HESQISVYDSK--LECSR---SWSPKD---ALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAETL 1049 (1134)
Q Consensus 981 ~fspdg~~l~~~--~d~~v~vwd~~--~~~~~---~~~~~~---~h~~~v~~v~~s~dg~~l~-~~~~dg~I~vwd~~~~ 1049 (1134)
+|+|||++++++ .++.|.+|++. ...+. .+.... .....+..++|+|||++|+ +...++.|.+|++...
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 999999987774 46889999983 22221 111111 1124588999999999874 5556899999999732
Q ss_pred ---ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC-CcEEEEecC
Q 001160 1050 ---RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD-GAVHVVEPS 1100 (1134)
Q Consensus 1050 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D-g~v~vW~~~ 1100 (1134)
+.+..+.. +...+.+++|+| ||++|++++.+ +.|.+|++.
T Consensus 273 g~~~~~~~~~~----------~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 273 GHLTLIQQIST----------EGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp GCEEEEEEEEC----------SSSCCCEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcEEEeEEEec----------CCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEe
Confidence 23333221 124566899999 78888877765 899999654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=222.15 Aligned_cols=272 Identities=15% Similarity=0.117 Sum_probs=197.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEEcCCCCEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las 425 (1134)
.+|++++|||||++++.++..||++.||++.+++... +..|. ..|.+++|||| +.+++
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l~~ 80 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVILV 80 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEEEE
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEEEE
Confidence 4799999999999654444449999999987665432 33444 68999999999 77777
Q ss_pred EeC---CCeEEEEEcCC--CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 426 AFS---KHIVHLYTYNP--TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 426 ~~~---dg~i~iwd~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
++. +....+|.++. ..... .+.. ...+...+|+|||+.+++++++.++. .+||+.+++.......+ .
T Consensus 81 ~~~~~g~~~~~l~~~~~~~~g~~~---~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~-~-- 152 (582)
T 3o4h_A 81 RDVSKGAEQHALFKVNTSRPGEEQ---RLEA-VKPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLP-G-- 152 (582)
T ss_dssp EECSTTSCCEEEEEEETTSTTCCE---ECTT-SCSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEES-S--
T ss_pred eccCCCCcceEEEEEeccCCCccc---cccC-CCCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCC-C--
Confidence 765 45566665543 22211 2222 22345779999998756666666554 49999998866544433 3
Q ss_pred EEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 501 YSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
.+++|+|++ ++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+.|+++.. ++...|++||+.+
T Consensus 153 ~~~~~spDG--~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 FGFVSDIRG--DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRD 227 (582)
T ss_dssp CEEEEEEET--TEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTT
T ss_pred ceEEECCCC--CEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCC
Confidence 788888755 899988877 78999999877654 56777788999999999999995432 2334899999999
Q ss_pred CeeEEEecCccCcceEEEE--------EeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 577 GAIKRTYSGFRKRSLGVVQ--------FDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
++.. .+..+.. .+..++ |+|||..+++++.++.+++|++ ++.... . ...+.+++|+ ++++++
T Consensus 228 ~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 228 GSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp CCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TTEEEE
T ss_pred CcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CCEEEE
Confidence 8887 6666554 555566 9999988888999999999999 655441 1 2357899999 999998
Q ss_pred EEeCCCc---EEEEECC
Q 001160 649 VTTSDNG---IKILANS 662 (1134)
Q Consensus 649 ~~~~dg~---i~iw~~~ 662 (1134)
+++.+.+ +.+|+..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 8887644 5666554
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-19 Score=199.65 Aligned_cols=273 Identities=8% Similarity=0.019 Sum_probs=203.4
Q ss_pred CcceeEeeCCCCCCccc--------------cCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCc
Q 001160 314 QSDEVSFAGVAHTPNVY--------------SQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSR 379 (1134)
Q Consensus 314 ~~~~v~~s~~g~~~~~~--------------~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~ 379 (1134)
....++++++|+.+.+. .+|..+++.+..+.....+.+++|+|+|+++++++..++.|.+||..++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 121 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG 121 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC
Confidence 44556777776654433 3445567777777766778999999999977788888899999999998
Q ss_pred cccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCccceeeEEecccCCee
Q 001160 380 ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF--SKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457 (1134)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 457 (1134)
+.+...... ....+ .......+.+++|+|+|+++++++ .++.|.+||..+++... .+..+...+.
T Consensus 122 ~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~~ 188 (353)
T 3vgz_A 122 EVKGRLVLD-----DRKRT-----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMST 188 (353)
T ss_dssp CEEEEEESC-----CCCCC-----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTCC
T ss_pred eeEEEEecC-----CCccc-----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCccc
Confidence 765431100 00000 000011278899999999888776 48899999999876554 4444556688
Q ss_pred EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC----CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCC
Q 001160 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLG 532 (1134)
Q Consensus 458 ~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~ 532 (1134)
+++|+|+++ .+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++ .++++++ .++.|.+||+.+++
T Consensus 189 ~~~~s~dg~--~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 189 GLALDSEGK--RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCEEETTTT--EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCC
T ss_pred eEEECCCCC--EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCc
Confidence 999999999 788888899999999999998877764 55668889998865 5555554 55999999999888
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC
Q 001160 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1134)
....+..... ..++|+|+|++++++.. .++.|.+||..+++.+..+.... .+.+++|+|+|++++++..++
T Consensus 265 ~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYKVVKTFDTPT--HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTEEEEEEECCS--EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEecCC--CCCeEEEcCCCCEEEEEEccc
Confidence 7766655432 57899999998776652 47789999999999988887654 678899999999887766543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-20 Score=199.45 Aligned_cols=257 Identities=9% Similarity=0.041 Sum_probs=188.5
Q ss_pred CCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccC-ccccccccceeecccccccccccc
Q 001160 324 AHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGS-RERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 324 g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
+....++.+|...++......|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++....
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~------------------ 78 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV------------------ 78 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe------------------
Confidence 334455666666777777777899999999999998 556665 88999999998 764431
Q ss_pred ccccC-CcCeEEEEEcCCCCEEEEEe--CCCeEEEE--EcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC
Q 001160 403 LLNDA-AISVNRCVWGPDGLMLGVAF--SKHIVHLY--TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 403 ~l~~h-~~~V~~i~~spdg~~las~~--~dg~i~iw--d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
..+| ...|.+++|+|||++|++++ .++...|| +..++. .. .+..+ ..+.+++|+||++. ++++++.|+
T Consensus 79 -~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~ 151 (297)
T 2ojh_A 79 -DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQ 151 (297)
T ss_dssp -CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETT
T ss_pred -ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCC
Confidence 2233 46789999999999999998 33445555 445543 22 33333 35899999999994 334788899
Q ss_pred cEEEEECC-CCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcc-CCCceeEecCCCCcEEEEEECCCCC
Q 001160 478 MIKVWDVV-AGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 478 ~i~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
.++||++. .+.....+..|...+.+++|+|++ .+++.++ .++.+++|+++ .......+..+...+.+++|+|+|+
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp EEEEEEEETTTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS
T ss_pred ceEEEEEECCCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC
Confidence 99999863 233446677788899999998755 6676655 59999999987 4555666666777899999999999
Q ss_pred EEEEEeeCCC-------CCCcEEEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEEEEeCCC
Q 001160 555 RLFSCGTSKE-------GESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEF 610 (1134)
Q Consensus 555 ~l~~~~~~~~-------~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 610 (1134)
+|++++.+.. .+..|++||+.+++... .+.++.. .+.+++|+|++++|++++.+.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 9998875321 23679999999886543 3435554 788899999999998877543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-20 Score=227.64 Aligned_cols=277 Identities=10% Similarity=0.074 Sum_probs=194.9
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCc---CeEEEEEcCCCCEEEEEe
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAI---SVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~i~~spdg~~las~~ 427 (1134)
.++|+|||+ +++++ .||+|++||+.+++.... +.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 66654 599999999999875432 223332 489999999999999987
Q ss_pred C---------CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCC
Q 001160 428 S---------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHE 497 (1134)
Q Consensus 428 ~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~ 497 (1134)
. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. |+.|++||+.+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999988652101 12 25689999999999 677765 789999999888765432 2333
Q ss_pred CCe-----------------EEEEeeccCCccEEEEEecCC----------------------------------eEEEE
Q 001160 498 APV-----------------YSVCPHHKESIQFIFSTAIDG----------------------------------KIKAW 526 (1134)
Q Consensus 498 ~~v-----------------~~i~~~~~~~~~~l~s~~~d~----------------------------------~i~~w 526 (1134)
..| .+++|+|++ ++|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 478898754 8999888652 78899
Q ss_pred EccCCCce--eE------ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe----CCCCeeEEEe----cCccCcc
Q 001160 527 LYDYLGSR--VD------YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN----ESEGAIKRTY----SGFRKRS 590 (1134)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd----~~~~~~~~~~----~~~~~~~ 590 (1134)
|+.+++.. .. +..+...+..++|+||++.+++.....++...|.+|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99876642 11 2346678999999999877666443223345699999 8888766555 24433 4
Q ss_pred eE-----EEEEeCCCCEEEE--EeCCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC-----CcE
Q 001160 591 LG-----VVQFDTTRNRFLA--AGDEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD-----NGI 656 (1134)
Q Consensus 591 v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-----g~i 656 (1134)
+. .+.|+|||+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 55 7889999986654 33444 577788877663 333322 2246677777 88877777665 778
Q ss_pred EEEECC
Q 001160 657 KILANS 662 (1134)
Q Consensus 657 ~iw~~~ 662 (1134)
++|.+.
T Consensus 385 ~l~~~~ 390 (719)
T 1z68_A 385 NIYRIS 390 (719)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 888764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-18 Score=194.02 Aligned_cols=274 Identities=13% Similarity=0.109 Sum_probs=190.9
Q ss_pred CCCccccCccccceE--EEEecCCCCeeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeecccccccccc
Q 001160 325 HTPNVYSQDDLTKTV--VRTLNQGSNVMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQ 400 (1134)
Q Consensus 325 ~~~~~~~~~~~~~~~--~~~l~h~~~V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1134)
..+.+|.+|..+++. +....+...+..++|||||+ +++++.. ++.|.+|++.+++.....
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~--------------- 79 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN--------------- 79 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE---------------
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee---------------
Confidence 345566777665554 33445667889999999998 6666543 689999999776532110
Q ss_pred ccccccCCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceeeEEec---------ccCCeeEEEEecCCCcEEE
Q 001160 401 NALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLEIDA---------HVGGVNDIAFAHPNKQLCI 470 (1134)
Q Consensus 401 ~~~l~~h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~---------h~~~v~~l~~s~d~~~~~l 470 (1134)
.+..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++
T Consensus 80 --~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~ 155 (347)
T 3hfq_A 80 --TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LA 155 (347)
T ss_dssp --EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EE
T ss_pred --eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EE
Confidence 1234677889999999999999887 689999999964433333323321 122488999999999 78
Q ss_pred EEEcCCCcEEEEECC-CCeeeE--EecCC-CCCeEEEEeeccCCccEEEE-EecCCeEEEEEccC--CCce--eEecCCC
Q 001160 471 VTCGDDKMIKVWDVV-AGRKQY--TFEGH-EAPVYSVCPHHKESIQFIFS-TAIDGKIKAWLYDY--LGSR--VDYDAPG 541 (1134)
Q Consensus 471 ~sg~~d~~i~iwd~~-~~~~~~--~~~~h-~~~v~~i~~~~~~~~~~l~s-~~~d~~i~~wd~~~--~~~~--~~~~~~~ 541 (1134)
+++..++.|.+||+. +++... .+..+ ...+..++|+|++ +++++ ...++.|.+|+++. ++.. ..+....
T Consensus 156 v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred EEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 888889999999998 554332 22222 3367789998754 65544 56789999999885 2221 1222211
Q ss_pred ------CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-C--eeEEEecCccCcceEEEEEeCCCCEEEEEeC-CCe
Q 001160 542 ------NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-G--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EFQ 611 (1134)
Q Consensus 542 ------~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 611 (1134)
..+..++|+|||++|+++.. .++.|.+|++.. + +.+..+..+.. .+..++|+|+|++|++++. ++.
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCc
Confidence 45889999999998876553 467899999873 2 45555555443 5788999999999888775 589
Q ss_pred EEEE--ECCCCeeEE
Q 001160 612 IKFW--DMDNMNMLT 624 (1134)
Q Consensus 612 i~iw--d~~~~~~~~ 624 (1134)
|.+| |..+++...
T Consensus 310 v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 310 ATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEECTTTCCEEE
T ss_pred EEEEEEeCCCCeEEe
Confidence 9999 555666553
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=227.84 Aligned_cols=306 Identities=9% Similarity=0.069 Sum_probs=209.6
Q ss_pred ccccCccccceEEEEecCCC----CeeEEEEecCCCeEEEEEeC---------CCcEEEEEccCccccccccceeecccc
Q 001160 328 NVYSQDDLTKTVVRTLNQGS----NVMSMDFHPQQQTILLVGTN---------VGDISLWEVGSRERLAHKPFKVWDISA 394 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~----~V~~v~~spdg~~llasg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 394 (1134)
.++.++..+++....+.+.. .|.+++|||||++ |++++. ++.|++||+.+++.+....
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-------- 107 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQF-VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-------- 107 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSE-EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--------
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCe-EEEEecCceeEEeecceEEEEEECCCCcccccee--------
Confidence 34556666677777776432 4999999999995 555554 6899999999987632100
Q ss_pred ccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCe-----------------e
Q 001160 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGV-----------------N 457 (1134)
Q Consensus 395 ~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-----------------~ 457 (1134)
+ ...+.+++|||||++||++. ++.|++||+.+++..+. ...++...| .
T Consensus 108 ---------l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 108 ---------L---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp ---------C---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred ---------c---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecccCcc
Confidence 1 24588999999999999985 78999999988765431 112332222 5
Q ss_pred EEEEecCCCcEEEEEEcCCC----------------------------------cEEEEECCCCeee--------EEecC
Q 001160 458 DIAFAHPNKQLCIVTCGDDK----------------------------------MIKVWDVVAGRKQ--------YTFEG 495 (1134)
Q Consensus 458 ~l~~s~d~~~~~l~sg~~d~----------------------------------~i~iwd~~~~~~~--------~~~~~ 495 (1134)
+++|||||+ .|++++.|. .|++||+.+++.. ..+.+
T Consensus 173 ~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 173 ALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp CEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 899999999 677776542 7899999988753 12346
Q ss_pred CCCCeEEEEeeccCCccEEEEEecC----CeEEEEE----ccCCCceeEe----cCCCCcEE-----EEEECCCCCEEEE
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAID----GKIKAWL----YDYLGSRVDY----DAPGNWCT-----MMAYSADGTRLFS 558 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd----~~~~~~~~~~----~~~~~~v~-----~~~~s~~~~~l~~ 558 (1134)
|...+..++|+|+ +.++++.... ..|.+|| +.+++....+ ..+...+. .++|+|||+.++.
T Consensus 251 ~~~~~~~~~~SpD--~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 251 SDYYFSWLTWVTD--ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp SCEEEEEEEESSS--SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred CcceEEEeEEeCC--CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 8888999999886 4677664432 3488889 7665554443 35555665 7899999998776
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCC--Ce-eEEEEeC--
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDN--MN-MLTTVDA-- 628 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~~-- 628 (1134)
...+.++...|++||+.+++ ...+..+.. .+..+.+. +++.++..+.+ +..++|.+.. +. ....+..
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~-~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~ 405 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVEN-AIQITSGKW-EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHL 405 (719)
T ss_dssp EEECTTSCEEEEEESSCSTT-CEECSCSSS-CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTT
T ss_pred EEEccCCceEEEEEECCCCc-eEecccCce-EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCcc
Confidence 54445566789999988776 445554433 56677777 88888776654 7888888754 32 1233321
Q ss_pred CCCCCCcceEEEccCCCEEEEEe-CC--CcEEEEECCCc
Q 001160 629 DGGLPASPRLRFNKEGSLLAVTT-SD--NGIKILANSDG 664 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~~l~~~~-~d--g~i~iw~~~~~ 664 (1134)
.++...+..+.|+||+++++... .. ..+.+||+.++
T Consensus 406 ~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 406 RKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp TTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 11223567899999998777543 32 46889998776
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-18 Score=194.65 Aligned_cols=301 Identities=10% Similarity=-0.002 Sum_probs=199.7
Q ss_pred cccceEEEEec-CCCCeeE-----EEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeeccccccccccccccc
Q 001160 334 DLTKTVVRTLN-QGSNVMS-----MDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405 (1134)
Q Consensus 334 ~~~~~~~~~l~-h~~~V~~-----v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (1134)
..++..+..+. |...+.. ++|||||+++++++..+| .|.+||+.+++.... ..
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~ 77 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TE 77 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CC
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------ee
Confidence 34455555565 5555555 899999996665554467 488889888765432 34
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEE--EecCCCcEEEEE-----------
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIA--FAHPNKQLCIVT----------- 472 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s----------- 472 (1134)
++...+..++|||||+.|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~ 152 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPL 152 (388)
T ss_dssp SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCC
T ss_pred CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccc
Confidence 555566678899999999999999999999999986543 3334555454444 489998 5553
Q ss_pred -----------EcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec-cCCccEEEEEecC------CeEEEEEccCCCce
Q 001160 473 -----------CGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH-KESIQFIFSTAID------GKIKAWLYDYLGSR 534 (1134)
Q Consensus 473 -----------g~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~l~s~~~d------~~i~~wd~~~~~~~ 534 (1134)
.+.+..|.+||+.+++.. .+..+...+..++|+| ++ ..|+.++.+ ..|.++|.......
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (388)
T 3pe7_A 153 TDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMR 229 (388)
T ss_dssp CSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred cccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence 234578999999998754 4445677889999988 54 777776653 36777887655443
Q ss_pred eEecCCC-CcEEEEEECCCCCEEEEEeeCCC-CCCcEEEEeCCCCeeE--EEecCccC--cceEEEEEeCCCCEEEEE--
Q 001160 535 VDYDAPG-NWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIK--RTYSGFRK--RSLGVVQFDTTRNRFLAA-- 606 (1134)
Q Consensus 535 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~l~~~-- 606 (1134)
....... ..+..++|+|||+.|+..+.... .+..|++||+.+++.. ..+.++.. .......|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEee
Confidence 3323222 35788999999998876554221 1234999999988743 33333110 001123699999888753
Q ss_pred -------eCCCeEEEEECCCCeeEEEEeCCCCCC--------CcceEEEccCCCEEEEEeC-CCcEEEEEC
Q 001160 607 -------GDEFQIKFWDMDNMNMLTTVDADGGLP--------ASPRLRFNKEGSLLAVTTS-DNGIKILAN 661 (1134)
Q Consensus 607 -------~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~~~~s~d~~~l~~~~~-dg~i~iw~~ 661 (1134)
..+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 310 DDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp -------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 456789999999887654433322100 3678899999998887664 666666654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=196.76 Aligned_cols=259 Identities=14% Similarity=0.098 Sum_probs=177.0
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE--
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-- 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la-- 424 (1134)
..++.+++++++. ++++|+.+| ++||+........... .+... ...........+...|.+++|+|+|++||
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav~ 110 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSAC 110 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence 4689999999998 677788777 9998865321110000 00000 00000001123667899999999999999
Q ss_pred --EEeCCCeEEEEEcCCC--------CccceeeEEecccCCeeEEEEecC-CCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 425 --VAFSKHIVHLYTYNPT--------GELRQHLEIDAHVGGVNDIAFAHP-NKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 425 --s~~~dg~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+...
T Consensus 111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEEE
T ss_pred EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceeec
Confidence 7888999999998764 222233456689999999999998 55 8999999999999999999887777
Q ss_pred cCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------CCcEEEEEECCCCCEEEEEeeCC---
Q 001160 494 EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------GNWCTMMAYSADGTRLFSCGTSK--- 563 (1134)
Q Consensus 494 ~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~~~--- 563 (1134)
.+|...|.+++|+|+ |.+|++|+.||+|++||++ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 189 ~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 789999999999886 4899999999999999998 4444444333 22899999999988877654321
Q ss_pred CCCCcEEEEeCCCCe-----eEEEec-------CccCcceEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 001160 564 EGESHLVEWNESEGA-----IKRTYS-------GFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDM 617 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 617 (1134)
+....+++|++...+ ....+. +... +...+.+-++.+.+++++ ..+.|.+...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999987542 112221 1111 222344447777777655 4444555554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-18 Score=212.51 Aligned_cols=380 Identities=10% Similarity=0.016 Sum_probs=241.3
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcc----eEEEEEeCCCCEEEEEeCC---------
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRS----LGVVQFDTTRNRFLAAGDE--------- 609 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d--------- 609 (1134)
...+++|+|||++++++ ++.|++||+.+++....+.++.... ...++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 35578999999888874 5679999999999888777765321 2347899999999998865
Q ss_pred CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCC
Q 001160 610 FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSK 689 (1134)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1134)
+.+++||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++....-+..++...+
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~----------- 156 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII----------- 156 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE-----------
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccce-----------
Confidence 567799999987653 322 234688999999999999885 67999999887621110111100000
Q ss_pred CccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCc
Q 001160 690 PLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDS 769 (1134)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~ 769 (1134)
..+.. --+|.-+
T Consensus 157 --------------------------------------------------~~g~~--~~v~~ee---------------- 168 (740)
T 4a5s_A 157 --------------------------------------------------YNGIT--DWVYEEE---------------- 168 (740)
T ss_dssp --------------------------------------------------EESBC--CHHHHHH----------------
T ss_pred --------------------------------------------------ecCcc--cccccch----------------
Confidence 00000 0000000
Q ss_pred ccccceEEEEEecCCcceEEeecc-CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe
Q 001160 770 IAASKVVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL 848 (1134)
Q Consensus 770 ~~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~ 848 (1134)
--.....+.|||||+.|+....| +.+.+|++..... .. .+ ...+..+.+
T Consensus 169 -~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~---------~~-~~~~~~~~y 218 (740)
T 4a5s_A 169 -VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES---------LQ-YPKTVRVPY 218 (740)
T ss_dssp -TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT---------CS-SCEEEEEEC
T ss_pred -hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC---------CC-CCcceeecC
Confidence 00223468999999999888766 4488887632110 00 02 456677888
Q ss_pred ccCCCEEEEEeCCeEEEEECCC---C---eEEEEec-----CCCCceEEEEEcCCCCcEEEEEeC----CCcEEEEEcCC
Q 001160 849 SKNDSYVMSASGGKVSLFNMMT---F---KVMTMFM-----SPPPAATFLAFHPQDNNIIAIGME----DSSVQIYNVRV 913 (1134)
Q Consensus 849 s~dg~~la~~sdg~i~vwd~~~---~---~~~~~~~-----~~~~~i~~l~~s~~~~~~lasg~~----dg~i~iwd~~~ 913 (1134)
.+.|..-. ..+|++||+.+ + +...... +|...+..++||| |+++++.... +..|++||+.+
T Consensus 219 p~~G~~~~---~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 219 PKAGAVNP---TVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CBTTSCCC---EEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEET
T ss_pred CCCcCcCC---eeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCC
Confidence 87775311 24799999998 7 4433322 3777899999999 8887666543 34799999998
Q ss_pred ce----EEE--Ee--cCcccceE-----EEEEecCCCEEE-EEcC-C--CcEEEEeCCCcccccceeeecCCCCCCCCcC
Q 001160 914 DE----VKT--KL--KGHQNRIT-----GLAFSPTLNALV-SSGA-D--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976 (1134)
Q Consensus 914 ~~----~~~--~l--~~h~~~i~-----~l~~s~d~~~l~-s~~~-D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1134)
++ +.. .+ .+|...|. .++|+|||+.|+ ..+. + ..|.+||+.+++.. ....+. ..
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~----~~ 365 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT----WE 365 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS----SC
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC----EE
Confidence 87 322 22 45655544 789999999877 6653 3 46888898876532 222221 23
Q ss_pred ceEEEECCCCcEEEE-EEC-----C--eEEEEeCCCccee-ccCCC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEE
Q 001160 977 ETKVQFHNDQTHLLV-VHE-----S--QISVYDSKLECSR-SWSPK-DALPAPISSAIYSCDGLLVYAGFCD---GAIGV 1043 (1134)
Q Consensus 977 v~~~~fspdg~~l~~-~~d-----~--~v~vwd~~~~~~~-~~~~~-~~h~~~v~~v~~s~dg~~l~~~~~d---g~I~v 1043 (1134)
+..+. ++|++.++. +.. + .|...++.+.... .+... .+.......+.||||+++++..... ..+.+
T Consensus 366 v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l 444 (740)
T 4a5s_A 366 VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (740)
T ss_dssp EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEE
Confidence 44443 355777766 432 2 4555555444332 22211 1224578899999999987655433 36888
Q ss_pred EeCCCcceeeec
Q 001160 1044 FDAETLRFRCRI 1055 (1134)
Q Consensus 1044 wd~~~~~~~~~~ 1055 (1134)
++..+++.+..+
T Consensus 445 ~~~~~~~~~~~l 456 (740)
T 4a5s_A 445 HSSVNDKGLRVL 456 (740)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCcEEEEe
Confidence 998888765544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-18 Score=208.20 Aligned_cols=274 Identities=11% Similarity=0.100 Sum_probs=184.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-----cCeEEEEEcCCCCE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-----ISVNRCVWGPDGLM 422 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~V~~i~~spdg~~ 422 (1134)
...+++|+|||+ +++++ ||+|++||+.+++.... +.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCCE
Confidence 466899999997 67775 99999999999875431 23333 23345899999999
Q ss_pred EEEEeCC---------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-
Q 001160 423 LGVAFSK---------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT- 492 (1134)
Q Consensus 423 las~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~- 492 (1134)
|++++.+ +.+.+||+.+++.. .+..|...+..++|||||+ .||.+. |+.|++||+.+++..+.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 56779999998643 3556778899999999999 567664 78999999988875442
Q ss_pred ecCCCCCe-----------------EEEEeeccCCccEEEEEecCCe-EEEEEccCCCceeEecCCCCcEEEEEECCCCC
Q 001160 493 FEGHEAPV-----------------YSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGT 554 (1134)
Q Consensus 493 ~~~h~~~v-----------------~~i~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 554 (1134)
..++...+ .++.|+|+ |+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD--g~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECCC--CCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333323 34788775 488888876655 8888764322110 2334566777777664
Q ss_pred EEEEEeeCCCCCCcEEEEeCCC---Ce--eEEEecC------ccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESE---GA--IKRTYSG------FRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDN 619 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~---~~--~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 619 (1134)
.. ....|++||+.+ ++ ....+.. +.. .+..++|+|||+.++... .+..|++||+.+
T Consensus 224 ~~--------~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t 294 (740)
T 4a5s_A 224 VN--------PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDH-YLCDVTWATQERISLQWLRRIQNYSVMDICDYDE 294 (740)
T ss_dssp CC--------CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCE-EEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred cC--------CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCe-EEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence 32 233599999998 73 2233332 333 788999999998766643 234799999998
Q ss_pred Ce----eE--EEE--eCCCCCCC---cceEEEccCCCEEE-EEeC-CC--cEEEEECCCc
Q 001160 620 MN----ML--TTV--DADGGLPA---SPRLRFNKEGSLLA-VTTS-DN--GIKILANSDG 664 (1134)
Q Consensus 620 ~~----~~--~~~--~~~~~~~~---v~~~~~s~d~~~l~-~~~~-dg--~i~iw~~~~~ 664 (1134)
++ +. ..+ ..+..-.. ....+|+|||+.++ ..+. +| .|++|+..++
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 86 11 111 22221111 23788999999877 6654 33 4666665543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=213.74 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=177.1
Q ss_pred CCcCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEcC---CCcEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---DKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~---d~~i~i 481 (1134)
+..+|.+++|+|||++||+++. ||++.||++++++.. .+..|. ..+..++|+|| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 4567999999999999999887 999999999765432 344455 68999999999 5 6776664 455556
Q ss_pred EECCC---CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEE
Q 001160 482 WDVVA---GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 482 wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
|.+.. +... .+.... .+...+|+|++++..+++++.++.. +||+.+++.......+. .+++|+|||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3332 443332 3446688888775566666655555 99998876555443333 78999999999998
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCCCCcc
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGLPASP 636 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~ 636 (1134)
++.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+.
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~ 241 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFS 241 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChh
Confidence 7764433467999999988765 5666655 789999999999999888888 8999999998877 44433 33566
Q ss_pred eEE--------EccCCCEEEEEeCCCcEEEEEC
Q 001160 637 RLR--------FNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 637 ~~~--------~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
.++ |+|||.++++++.++.+++|++
T Consensus 242 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 242 SYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677 9999999999999999999998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=195.07 Aligned_cols=241 Identities=12% Similarity=0.079 Sum_probs=179.7
Q ss_pred EEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcEE-EEEeCCCcEEEEEcCCceEEEEec
Q 001160 845 CIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNII-AIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l-asg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788889999888 8999999999999988887543 2578999999 77755 555678999999999999887776
Q ss_pred Cc------ccceEEEEEecCCCEEEEEcCC------------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEC
Q 001160 922 GH------QNRITGLAFSPTLNALVSSGAD------------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 922 ~h------~~~i~~l~~s~d~~~l~s~~~D------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++........ ... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCC----CcccceeEC
Confidence 33 2337899999999999998865 89999999986643321111 111 247889999
Q ss_pred CCCcEEEEEECCeEEEEeC-CCcceeccCCCC-C----------------------------------------------
Q 001160 984 NDQTHLLVVHESQISVYDS-KLECSRSWSPKD-A---------------------------------------------- 1015 (1134)
Q Consensus 984 pdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~-~---------------------------------------------- 1015 (1134)
|||+ ++++ ++.|.+||+ +++....+.... +
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 455999999 555444332211 0
Q ss_pred ------------------CCCCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEe
Q 001160 1016 ------------------LPAPISSAIYSC-DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1076 (1134)
Q Consensus 1016 ------------------h~~~v~~v~~s~-dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1134)
+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+... ..+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceE
Confidence 012456778889 99999888 889999999999887776422 2345789
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCccccCC
Q 001160 1077 PHPSEPNQIALGMSDGAVHVVEPSDAELKWGG 1108 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1108 (1134)
|+| ++++|++++.++.|.+||+.+++....+
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777888888999999999888744433
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=185.68 Aligned_cols=302 Identities=9% Similarity=0.051 Sum_probs=188.1
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeC--CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC----CeEEEEECCC--Cee
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNE--SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDN--MNM 622 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~ 622 (1134)
+...+++.++.....++.|++|++ .+++.......+. .....++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344566677655445667888865 4565443322232 266779999999999998875 7999998865 443
Q ss_pred E--EEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCC
Q 001160 623 L--TTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1134)
Q Consensus 623 ~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
. .....+ ......+++ ++++|++++ .++.|.+|++..... +..+.... ...+
T Consensus 90 ~~~~~~~~~--~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~~~------------------~~~g-- 144 (361)
T 3scy_A 90 HLLNTQKTM--GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASDVI------------------EFKG-- 144 (361)
T ss_dssp EEEEEEECS--SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSEEE------------------ECCC--
T ss_pred EEeeEeccC--CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-CcccceeE------------------EccC--
Confidence 3 233322 224566677 888777776 578999999865411 11000000 0000
Q ss_pred cccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEE
Q 001160 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 779 (1134)
.+ ..+...+...+.+++
T Consensus 145 --------------------------------------------~~-------------------~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 145 --------------------------------------------SG-------------------PDKERQTMPHLHCVR 161 (361)
T ss_dssp --------------------------------------------CC-------------------SCTTTCSSCCEEEEE
T ss_pred --------------------------------------------CC-------------------CCccccCCCcceEEE
Confidence 00 000011234568899
Q ss_pred EecCCcceEEeec-cCeeEEeecccccCCCCCC-cccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEE
Q 001160 780 YTNSGLSLLALAS-NAVHKLWKWQRTERNPSGK-ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMS 857 (1134)
Q Consensus 780 ~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~ 857 (1134)
|+|+|+++++++. ++.+.+|++.........+ .... +........ + ...+..++|+|||+++++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~----------~~~~~~~~~---~-~~~~~~~~~spdg~~l~v 227 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK----------GTPEAFKVA---P-GSGPRHLIFNSDGKFAYL 227 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE----------EEEEEEECC---T-TCCEEEEEECTTSSEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec----------ccccceecC---C-CCCCeEEEEcCCCCEEEE
Confidence 9999997766554 7899999875321000000 0000 000000111 2 456788999999998877
Q ss_pred Ee--CCeEEEEECCCCeE--EEEec---CCCCceEEEEEcCCCCcEEEEEeC--CCcEEEEEcC--Cce--EEEEecCcc
Q 001160 858 AS--GGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVR--VDE--VKTKLKGHQ 924 (1134)
Q Consensus 858 ~s--dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~~~~lasg~~--dg~i~iwd~~--~~~--~~~~l~~h~ 924 (1134)
++ ++.|.+|++.+++. +..+. .+......++|+| ++++|+++.. ++.|.+|++. +++ .+..+.. .
T Consensus 228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 76 78999999987754 23332 2334578999999 8888866665 4899999996 444 4445554 5
Q ss_pred cceEEEEEecCCCEEEEEc-CCCcEEEEeC--CCcc
Q 001160 925 NRITGLAFSPTLNALVSSG-ADAQLCMWSI--DKWE 957 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~--~~~~ 957 (1134)
..+.+++|+|||++|++++ .++.|.+|++ ++++
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 5688999999999888877 6788999655 4555
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=190.90 Aligned_cols=280 Identities=10% Similarity=0.066 Sum_probs=189.9
Q ss_pred EEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccc-cCCcCeEEEEEcCCCCEEEE-EeC
Q 001160 351 SMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN-DAAISVNRCVWGPDGLMLGV-AFS 428 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~i~~spdg~~las-~~~ 428 (1134)
+++++++++ ++++++.++.|.+||+.+++.+.. +. +....+..++|+|||+++++ +..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 457788886 788899999999999998876543 11 12225789999999997654 456
Q ss_pred CCeEEEEEcCCCCccceeeEEec-c-----cCCeeEEEEecCCCcEEEEEEcCC------------CcEEEEECCCCee-
Q 001160 429 KHIVHLYTYNPTGELRQHLEIDA-H-----VGGVNDIAFAHPNKQLCIVTCGDD------------KMIKVWDVVAGRK- 489 (1134)
Q Consensus 429 dg~i~iwd~~~~~~~~~~~~~~~-h-----~~~v~~l~~s~d~~~~~l~sg~~d------------~~i~iwd~~~~~~- 489 (1134)
++.|.+||+.+++... .+.. + ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876554 2322 2 23478999999999 67776654 8999999988543
Q ss_pred --eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------------------C---c
Q 001160 490 --QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------------------N---W 543 (1134)
Q Consensus 490 --~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1134)
+..+. +...+.+++|+|++ . +++++ +.|.+||+.+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 34444 33468888898765 6 55543 349999998887666554332 0 3
Q ss_pred EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE-EecCccCcceEEEEEeC-CCCEEEEEeCCCeEEEEECCCCe
Q 001160 544 CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRKRSLGVVQFDT-TRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 544 v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
...+++++++........ ....+..+|..+++... .+.... ..+..++|+| ++++++++ ++.|++||+.+++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~ 286 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLT-ELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK 286 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECS-SCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCC-CcceeeEecCCCCCEEEEE--cCeEEEEECccCe
Confidence 445666665532211000 01112234554443211 111122 2678899999 99999888 8899999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 622 MLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
.+..+.... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 287 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 287 LIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp EEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred EEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 888886432 4679999999998888888999999999887 444333
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-16 Score=179.85 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=171.4
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCC-CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSK----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
+...+..++|+|||++|++++.+ +.|.+|+++.. ..+........+......+++ +++. ++++...++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEE
Confidence 56678889999999999999875 79999998764 333333344445566777887 7773 4445557899999
Q ss_pred EECCCCeeeEEe------cC--------CCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCCc------e------
Q 001160 482 WDVVAGRKQYTF------EG--------HEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGS------R------ 534 (1134)
Q Consensus 482 wd~~~~~~~~~~------~~--------h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~------~------ 534 (1134)
|++.....+..+ .+ +...+.+++|+|++ +++++++ .++.|++|+++.... .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 999754332211 11 12345789998755 6555544 589999999886542 1
Q ss_pred -eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCcc--CcceEEEEEeCCCCEEEEEeC-
Q 001160 535 -VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFR--KRSLGVVQFDTTRNRFLAAGD- 608 (1134)
Q Consensus 535 -~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~- 608 (1134)
.........+..++|+|||++++++.. .++.|.+|++.+++. +..+.... ......++|+|||++|+++..
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 222334556789999999999887763 467899999987754 33332221 124678999999999877665
Q ss_pred -CCeEEEEECC--CCe--eEEEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECC
Q 001160 609 -EFQIKFWDMD--NMN--MLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANS 662 (1134)
Q Consensus 609 -dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~ 662 (1134)
++.|.+|++. +++ .+..+.. + ..+..++|+|||++|++++ .++.|.+|++.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLT-G--IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEEC-S--SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecC-C--CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 4899999996 444 3444443 2 3568999999999988887 57899997654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=188.37 Aligned_cols=251 Identities=14% Similarity=0.099 Sum_probs=169.9
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECC-CCeEEEEecC-CCCceEEEEEcCCCCc--EEEEEe-------------C
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMM-TFKVMTMFMS-PPPAATFLAFHPQDNN--IIAIGM-------------E 902 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~lasg~-------------~ 902 (1134)
...+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++ +++++. .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 346788999999999998884499999997 7776543321 112356689999 888 455553 6
Q ss_pred CCcEEEEEcC-CceEEEEec----CcccceEEEEEecCCCEEEEEc-CCCcEEEEeCC-CcccccceeeecCCCCCCCCc
Q 001160 903 DSSVQIYNVR-VDEVKTKLK----GHQNRITGLAFSPTLNALVSSG-ADAQLCMWSID-KWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 903 dg~i~iwd~~-~~~~~~~l~----~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~-~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+|.+.+|++. +++....+. .+...+.+++|+|||++|++++ .++.|++|+++ +++......+.... +. .
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---D 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---C
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---C
Confidence 8999999997 466544443 2556799999999999888765 46789999998 66532211111111 01 3
Q ss_pred CceEEEECCCCcEEEEEE--CCeEEEEeCC---Ccce---eccCCC----CCCCC------CeEEEE-EccCCCEEEEEe
Q 001160 976 GETKVQFHNDQTHLLVVH--ESQISVYDSK---LECS---RSWSPK----DALPA------PISSAI-YSCDGLLVYAGF 1036 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~--d~~v~vwd~~---~~~~---~~~~~~----~~h~~------~v~~v~-~s~dg~~l~~~~ 1036 (1134)
.+..++|+|||++++++. ++.|.+|+++ ++.. ..+... .+|.. .+..++ |||||++|++++
T Consensus 194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~ 273 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence 578999999999998854 5789999762 3321 111111 12222 588999 999999988776
Q ss_pred cCC------cEEEEeCC-CcceeeecCCcccccccccCCCCccEEEeecCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001160 1037 CDG------AIGVFDAE-TLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPS--EPNQIALGMSD-GAVHVVEPSDA 1102 (1134)
Q Consensus 1037 ~dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~l~s~~~D-g~v~vW~~~~~ 1102 (1134)
.+. .|.+|++. +|+....... .+ .....+..++|+|. ||++|++++.+ ++|.+|++...
T Consensus 274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~---~~----~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 274 RANKFELQGYIAGFKLRDCGSIEKQLFL---SP----TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEE---EE----CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCeEEEEEECCCCCEEEeeee---ee----cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 533 89999996 5654321100 00 01123346778885 57899988865 89999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=190.29 Aligned_cols=254 Identities=10% Similarity=0.014 Sum_probs=174.8
Q ss_pred cccCCcCeEE-----EEEcCCCCEEEEEeC-CC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC
Q 001160 404 LNDAAISVNR-----CVWGPDGLMLGVAFS-KH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475 (1134)
Q Consensus 404 l~~h~~~V~~-----i~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~ 475 (1134)
+..|...... .+|||||++|+.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4445544554 889999999999987 66 48888998876443 2335555666789999999 7888888
Q ss_pred CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe----------------------cCCeEEEEEccCCCc
Q 001160 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA----------------------IDGKIKAWLYDYLGS 533 (1134)
Q Consensus 476 d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------------------~d~~i~~wd~~~~~~ 533 (1134)
++.|++||+.+++....+..+...+....+..+.++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877666666666555554455667776432 347899999988754
Q ss_pred eeEecCCCCcEEEEEECC-CCCEEEEEeeCCC--CCCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEEeC-
Q 001160 534 RVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAAGD- 608 (1134)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~- 608 (1134)
.. +..+...+..++|+| ||+.|+.+..... ....|.++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 43 334556789999999 9999987764221 1447888888765543 3333332 25778899999998766442
Q ss_pred C----CeEEEEECCCCeeEEEEeCCCCC---CCcceEEEccCCCEEEEE---------eCCCcEEEEECCCc
Q 001160 609 E----FQIKFWDMDNMNMLTTVDADGGL---PASPRLRFNKEGSLLAVT---------TSDNGIKILANSDG 664 (1134)
Q Consensus 609 d----g~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~---------~~dg~i~iw~~~~~ 664 (1134)
+ +.|++||+.+++........... .....++|+|||+.|+.. ..+..|++||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2 23999999998754433222100 012334799999988754 44668999998776
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=178.23 Aligned_cols=247 Identities=10% Similarity=0.081 Sum_probs=172.8
Q ss_pred CcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc------------
Q 001160 408 AISVNRCVWGPDGLMLGVAFSKHIVHLYTYN-PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------------ 474 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las~~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~------------ 474 (1134)
...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +...+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3468899999999999999888 99999997 664332 1121111 236679999999843355553
Q ss_pred -CCCcEEEEECC-CCeeeEEec----CCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEcc-CCCcee--Eec--CCCC
Q 001160 475 -DDKMIKVWDVV-AGRKQYTFE----GHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYD-YLGSRV--DYD--APGN 542 (1134)
Q Consensus 475 -~d~~i~iwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~--~~~--~~~~ 542 (1134)
.++.+.+|++. +|+....+. .+...+.+++|+|++ ++++++. .++.|++||++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE--TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC--CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 68999999997 466554443 255679999998755 7777665 46899999998 554432 233 2356
Q ss_pred cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC--CCeeE---EEecCcc----C-c-------ceEEEE-EeCCCCEEE
Q 001160 543 WCTMMAYSADGTRLFSCGTSKEGESHLVEWNES--EGAIK---RTYSGFR----K-R-------SLGVVQ-FDTTRNRFL 604 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~--~~~~~---~~~~~~~----~-~-------~v~~~~-~~~~~~~l~ 604 (1134)
.+..++|+|||++++++.. .++.|.+|++. +++.. ..+.... . . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 7899999999999988753 35678998764 56542 2222111 1 1 377899 999999988
Q ss_pred EEeCC-C-----eEEEEECC-CCeeEEE---EeCCCCCCCcceEEEcc---CCCEEEEEeCC-CcEEEEECCCc
Q 001160 605 AAGDE-F-----QIKFWDMD-NMNMLTT---VDADGGLPASPRLRFNK---EGSLLAVTTSD-NGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---d~~~l~~~~~d-g~i~iw~~~~~ 664 (1134)
+++.+ . .|.+|++. +++.... ...+. ..+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 32222 2457889999 89999998864 89999998654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-17 Score=183.67 Aligned_cols=300 Identities=9% Similarity=-0.026 Sum_probs=193.1
Q ss_pred ccceEEEEec-CCCC-----eeEEEEecCCCeEEEEEeCCC--cEEEEEccCccccccccceeecccccccccccccccc
Q 001160 335 LTKTVVRTLN-QGSN-----VMSMDFHPQQQTILLVGTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 335 ~~~~~~~~l~-h~~~-----V~~v~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
.++..+..+. +... +.+++|||||++++++...+| .|.+||+.+++.... ..+
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l-------------------~~~ 78 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL-------------------TEG 78 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC-------------------CCS
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe-------------------ecC
Confidence 4444555554 3223 788999999997666655433 688889888764321 122
Q ss_pred CCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeE-------------------EEEecCCCc
Q 001160 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVND-------------------IAFAHPNKQ 467 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------l~~s~d~~~ 467 (1134)
+......+.|||||++|+.++.++.|.+||+.+++... ....+...... ++|+|+++
T Consensus 79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~- 154 (396)
T 3c5m_A 79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS- 154 (396)
T ss_dssp SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-
T ss_pred CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCc-
Confidence 22223347899999999999999999999999876432 22223332222 35677777
Q ss_pred EEEEEE-----cCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeE
Q 001160 468 LCIVTC-----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVD 536 (1134)
Q Consensus 468 ~~l~sg-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~ 536 (1134)
.++.+ ..+..|++||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+||+........
T Consensus 155 -~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 155 -WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp -HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred -ceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 33332 45678999999988765444 46778899999882 22556655543 3688888875543332
Q ss_pred ecCC-CCcEEEEEECCCCCEEEEEeeCCC-CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC-CCCEEEEEe------
Q 001160 537 YDAP-GNWCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT-TRNRFLAAG------ 607 (1134)
Q Consensus 537 ~~~~-~~~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 607 (1134)
.... ...+..++|+|||++|+..+.... ..+.|++||+.+++........ ... +.|+| +|+.+++++
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC---
T ss_pred eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCccee
Confidence 2221 236888999999998887654211 1244999999988754433221 123 88999 999888754
Q ss_pred ----------CCCeEEEEECCCCeeEEEEeCCCCC--------CCcceEEEccCCCEEEEEeC-CCcEEEE--ECCCc
Q 001160 608 ----------DEFQIKFWDMDNMNMLTTVDADGGL--------PASPRLRFNKEGSLLAVTTS-DNGIKIL--ANSDG 664 (1134)
Q Consensus 608 ----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~s~d~~~l~~~~~-dg~i~iw--~~~~~ 664 (1134)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 02466899999998887765 4554454 44444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-16 Score=172.18 Aligned_cols=303 Identities=10% Similarity=0.086 Sum_probs=202.3
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee------CCCCCCcEEEEeCCCCeeEEEecCcc-----
Q 001160 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT------SKEGESHLVEWNESEGAIKRTYSGFR----- 587 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~i~~wd~~~~~~~~~~~~~~----- 587 (1134)
.|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..+++.+.++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999888877766655444 8999999999998753 11225679999999999888876431
Q ss_pred CcceEEEEEeCCCCEEEEEeC--CCeEEEEECCCCeeEEE-EeCCCCCCCcceEEEccCC-CEEEEEeCCCcEEEEECCC
Q 001160 588 KRSLGVVQFDTTRNRFLAAGD--EFQIKFWDMDNMNMLTT-VDADGGLPASPRLRFNKEG-SLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iw~~~~ 663 (1134)
......++++|+|++++++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.+|+...
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 113556899999999998763 68999999999988877 54321 2235677765 6778888999999998754
Q ss_pred chhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccc
Q 001160 664 GVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAED 743 (1134)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1134)
..+..... +
T Consensus 183 ~g~~~~~~--~--------------------------------------------------------------------- 191 (361)
T 2oiz_A 183 DGKVASQS--R--------------------------------------------------------------------- 191 (361)
T ss_dssp TSSEEEEE--E---------------------------------------------------------------------
T ss_pred CCcEeeec--c---------------------------------------------------------------------
Confidence 21111000 0
Q ss_pred cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccC
Q 001160 744 VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQP 823 (1134)
Q Consensus 744 ~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~ 823 (1134)
...+|+... .. ..+.+++++..++..+.++.+.++|+....... +..|..
T Consensus 192 --~~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~ 241 (361)
T 2oiz_A 192 --SKQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSL 241 (361)
T ss_dssp --CCCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEES
T ss_pred --ccceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccc
Confidence 000111110 00 011224555555555566777777753221100 000111
Q ss_pred CCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe------------CCeEEEEECCCCeEEEEecCCCCceEEEEEcC
Q 001160 824 PSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS------------GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHP 891 (1134)
Q Consensus 824 ~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 891 (1134)
........... ......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+|
T Consensus 242 ~~~~~~~~~~~-----p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp 314 (361)
T 2oiz_A 242 LNDEDKAKNWV-----PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ 314 (361)
T ss_dssp CCHHHHHTTCE-----ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET
T ss_pred cCccccccccc-----cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC
Confidence 11000000000 11112378999988777653 2379999999999999998777 99999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCc--eEEEEecCcccceEEEEEecCCC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVD--EVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~--~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
++++|+++.. ++|.+||..++ +.+..+..+......++++|||+
T Consensus 315 -dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 -QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred -CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 8889988876 99999999999 99999877778889999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=169.67 Aligned_cols=301 Identities=13% Similarity=0.194 Sum_probs=195.7
Q ss_pred CCCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECC
Q 001160 551 ADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMD 618 (1134)
Q Consensus 551 ~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~ 618 (1134)
++++++++.... .-.++.|++||..+++.+..+..... + .++|+|||+++++++. ++.|.+||..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 356666655421 11256899999999999888877654 3 7999999999999863 6789999999
Q ss_pred CCeeEEEEeCCC----CCCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhh-hcCCcccccCCCCCCCCCCCc
Q 001160 619 NMNMLTTVDADG----GLPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRM-LEGRAMDKNRCPSEPISSKPL 691 (1134)
Q Consensus 619 ~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 691 (1134)
+++.+..+.... .......++|+|||++|+++.. ++.|.+||+.++ +.+.. +...
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~~~----------------- 151 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTAAA----------------- 151 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGGGT-----------------
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEecCC-----------------
Confidence 999988886431 1134678999999999998864 589999999877 22222 1100
Q ss_pred cccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCccc
Q 001160 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIA 771 (1134)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 771 (1134)
T Consensus 152 -------------------------------------------------------------------------------- 151 (361)
T 2oiz_A 152 -------------------------------------------------------------------------------- 151 (361)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEEecCC-cceEEeeccCeeEEeecccccCCCCCCcccc-cCcccccCCCCCccccccCCCCCCCCceEEEEec
Q 001160 772 ASKVVRLIYTNSG-LSLLALASNAVHKLWKWQRTERNPSGKATAN-VAPQLWQPPSGTLMTNDINESKPTEESAACIALS 849 (1134)
Q Consensus 772 ~~~v~~~~~s~~g-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s 849 (1134)
....+.+.|++ ..+++.+.||.+.+|++... ++.... ....+|+... .+ ..+.++
T Consensus 152 --~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~-----g~~~~~~~~~~~~~~~~---------------~~-~~~~~~ 208 (361)
T 2oiz_A 152 --GCWSVIPQPNRPRSFMTICGDGGLLTINLGED-----GKVASQSRSKQMFSVKD---------------DP-IFIAPA 208 (361)
T ss_dssp --TEEEEEECTTSSSEEEEEETTSSEEEEEECTT-----SSEEEEEECCCCSCTTT---------------SC-BCSCCE
T ss_pred --CcceeEEcCCCCeeEEEECCCCcEEEEEECCC-----CcEeeeccccceEcCCC---------------Cc-eEEEec
Confidence 00112333433 33445555566666554321 111000 0001222211 11 123346
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCe--EEEEecCCC----------CceEEEEEcCCCCcEEEEEeC-----------CCc
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFK--VMTMFMSPP----------PAATFLAFHPQDNNIIAIGME-----------DSS 905 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~--~~~~~~~~~----------~~i~~l~~s~~~~~~lasg~~-----------dg~ 905 (1134)
+++..++..+ ++.+.++|+.... ....+.... .....++|+| +++.+.++.. .+.
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCce
Confidence 7787777776 8899999987543 222221111 1122378999 6666655532 348
Q ss_pred EEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc--ccccceeeecCCCCCCCCcCceEEEEC
Q 001160 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW--EKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 906 i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
|.+||+.+++.+..+..+. +.+++|+|||++|++++. ++|.+||..++ +.+.. + ...| .....++|+
T Consensus 288 v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~--i-~~~G-----~~P~~~~~~ 356 (361)
T 2oiz_A 288 IWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT--I-EGAA-----EASLQVQFH 356 (361)
T ss_dssp EEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE--E-TTSC-----SSEEEEEEC
T ss_pred EEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE--e-ccCC-----CCcEEEEec
Confidence 9999999999999998887 899999999999998887 99999999998 63321 1 1122 346889999
Q ss_pred CCCc
Q 001160 984 NDQT 987 (1134)
Q Consensus 984 pdg~ 987 (1134)
|||+
T Consensus 357 p~G~ 360 (361)
T 2oiz_A 357 PVGG 360 (361)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-16 Score=180.23 Aligned_cols=321 Identities=13% Similarity=0.032 Sum_probs=197.2
Q ss_pred EEccCCCceeEecCCCCc-----EEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCC
Q 001160 526 WLYDYLGSRVDYDAPGNW-----CTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTR 600 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 600 (1134)
.|..++.....+..+... +..++|+|||++|+..... +++..|++||+.+++......+... ....+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~-~g~~~l~~~d~~~~~~~~l~~~~~~-~~~~~~~spdg 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF-DGNRNYYLLNLETQQAVQLTEGKGD-NTFGGFISTDE 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-TSSCEEEEEETTTTEEEECCCSSCB-CTTTCEECTTS
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec-CCCceEEEEECCCCcEEEeecCCCC-ccccceECCCC
Confidence 355555555555444332 5678999999998877632 3456799999998876544333221 23347899999
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccC
Q 001160 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNR 680 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 680 (1134)
++|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.++...+|..
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--------~~~~g~~l~~~~~~~~~~~~~~------------------- 145 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEE--------WKGYGTWVANSDCTKLVGIEIL------------------- 145 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEEEEEEEECTTSSEEEEEEEE-------------------
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccc--------cCCCCCEEEeccCCcccccccc-------------------
Confidence 9999999999999999998877666553321 6677777776655544444321
Q ss_pred CCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccc
Q 001160 681 CPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQ 760 (1134)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~ 760 (1134)
T Consensus 146 -------------------------------------------------------------------------------- 145 (396)
T 3c5m_A 146 -------------------------------------------------------------------------------- 145 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeecCCcccccceEEEEEecCCcceEEe-----eccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCC
Q 001160 761 IKALRLPDSIAASKVVRLIYTNSGLSLLAL-----ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINE 835 (1134)
Q Consensus 761 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 835 (1134)
.+.++|+++.++.. ..+..|.+||+. +++.... ..
T Consensus 146 ----------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~----------------------~g~~~~~-~~- 185 (396)
T 3c5m_A 146 ----------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIE----------------------TGELEVI-HQ- 185 (396)
T ss_dssp ----------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETT----------------------TCCEEEE-EE-
T ss_pred ----------------ccccCCCCcceeeeeeccCCCcceEEEEECC----------------------CCcEEee-cc-
Confidence 01122333333322 123344455432 2221111 11
Q ss_pred CCCCCCceEEEEecc-CCCEEEEEe-C------CeEEEEECCCCeEEEEecCC--CCceEEEEEcCCCCcEEEEEeCC--
Q 001160 836 SKPTEESAACIALSK-NDSYVMSAS-G------GKVSLFNMMTFKVMTMFMSP--PPAATFLAFHPQDNNIIAIGMED-- 903 (1134)
Q Consensus 836 ~~h~~~~i~~~~~s~-dg~~la~~s-d------g~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~lasg~~d-- 903 (1134)
+ ...+..++|+| |++.|+..+ + ..|.+||+.+++... +..+ ...+..++|+| ++++|+.++.+
T Consensus 186 --~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~ 260 (396)
T 3c5m_A 186 --D-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIP-DGSAMAYVSYFKG 260 (396)
T ss_dssp --E-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECT-TSSCEEEEEEETT
T ss_pred --C-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECC-CCCEEEEEecCCC
Confidence 2 55678899999 888777765 2 368999987665433 3323 23588899999 88877776544
Q ss_pred ---CcEEEEEcCCceEEEEecCcccceEEEEEec-CCCEEEEEc----------------CCCcEEEEeCCCccccccee
Q 001160 904 ---SSVQIYNVRVDEVKTKLKGHQNRITGLAFSP-TLNALVSSG----------------ADAQLCMWSIDKWEKLKSRF 963 (1134)
Q Consensus 904 ---g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~-d~~~l~s~~----------------~D~~i~iWd~~~~~~~~~~~ 963 (1134)
+.|++||+.+++........ ... ++|+| ||+++++++ .+..|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred CccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence 45999999988654332211 123 89999 999888754 3478999999887642 1
Q ss_pred eecCCCCC-----CCCcCceEEEECCCCcEEEEEE--CCe--EEEEeCCCcc
Q 001160 964 IQAPAGRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQ--ISVYDSKLEC 1006 (1134)
Q Consensus 964 ~~~~~~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~--v~vwd~~~~~ 1006 (1134)
+....... .....+..++|+|||++|+... ++. |.++++.+..
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 22111100 0001245678999999988853 344 4444544433
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-15 Score=158.95 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=179.4
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecC------CCCceEEEEEc-CCCCcEEEEEeC-CCcEEEEE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFH-PQDNNIIAIGME-DSSVQIYN 910 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s-~~~~~~lasg~~-dg~i~iwd 910 (1134)
-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++||
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEEC
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEEC
Confidence 56789999999999888876 8999999987 666666642 34578999995 6 7777776643 88999999
Q ss_pred cCCceEEEEec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEE
Q 001160 911 VRVDEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHL 989 (1134)
Q Consensus 911 ~~~~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l 989 (1134)
.+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+.. .++. ..+..++++|+|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~-~~~~---~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGC-SKHL---EFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCC-CCcc---CCcEEEEECCCCCEE
Confidence 5677776664 3446789999999999888888889999999653 3221 1111 1111 357899999999977
Q ss_pred EEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC-cEEEEeCCCcceeeecCCcccccccccC
Q 001160 990 LVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-AIGVFDAETLRFRCRIGPSAYIPTYAVS 1067 (1134)
Q Consensus 990 ~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1067 (1134)
++. .++.|.+||.+++.+..+.. .++...+.+++++++|+++++...++ .|.+||. +++.+..+..+ .
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------~ 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------V 248 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------S
T ss_pred EEECCCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------C
Confidence 774 57899999997776665543 23346789999999999888887776 9999995 46666655422 1
Q ss_pred CCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCC
Q 001160 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1068 ~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
....+.+++++| +|+++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 224577899999 7777777 67999999997653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-10 Score=145.46 Aligned_cols=587 Identities=11% Similarity=0.075 Sum_probs=341.9
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-.++|. |- .|+.+| +..||-.+ |+.+...... . ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~~--------f~~~~~~~~~---~---~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGYA--------FTVYQHNEDD---P---NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSSC--------EEEECCCTTC---T---TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCCc--------eEEEeCCCCC---C---CcccccceeEEEECCCCCEEE-
Confidence 35799999999996 33 466665 56666322 1111110000 0 001245799999999987655
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccC----CeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-CCC-
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVG----GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-EAP- 499 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-~~~- 499 (1134)
|+.+| +..||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44555 899998765321 2221111 288998888886 444 343 45899998776543211111 123
Q ss_pred eEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
|.++..... ..+..++.++.|..||..+.+..... ......|.++...+++...+... ..-|.+||..+++
T Consensus 175 i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQG---DQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEET---TEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEECCC---CCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 777776543 24555666666888987765443221 12345788888888887666542 2238999988766
Q ss_pred eEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCCcceEEEccCCCEE
Q 001160 579 IKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPASPRLRFNKEGSLL 647 (1134)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l 647 (1134)
....... .....|.++...++|...+.. .+ -|.+||..+++........ -....|.++...++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l- 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM- 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-
Confidence 5433221 112368999998888765544 44 5889998877654332211 11246888999888874
Q ss_pred EEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCC
Q 001160 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1134)
-.|+.++.|..|+..++ . +..+.....
T Consensus 324 Wigt~~~Gl~~~~~~~~-~-~~~~~~~~~--------------------------------------------------- 350 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRN-R-FKNIRNIPY--------------------------------------------------- 350 (795)
T ss_dssp EEEESSSCEEEECGGGG-S-SEEECCCTT---------------------------------------------------
T ss_pred EEEECCCCeEEeCCCcc-c-ceEEcCCCC---------------------------------------------------
Confidence 45777778888876443 1 100000000
Q ss_pred CCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCC
Q 001160 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERN 807 (1134)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~ 807 (1134)
+.......|.++...++|. |-.++.++-+..|+......
T Consensus 351 ---------------------------------------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~- 389 (795)
T 4a2l_A 351 ---------------------------------------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF- 389 (795)
T ss_dssp ---------------------------------------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE-
T ss_pred ---------------------------------------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE-
Confidence 0000234578888888887 55566666677776432111
Q ss_pred CCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEec----CCCC
Q 001160 808 PSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM----SPPP 882 (1134)
Q Consensus 808 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~----~~~~ 882 (1134)
..+....+... ..+ . ...|.+++..++|+.|-+|. ++.|.+||..+++...... .+..
T Consensus 390 -----------~~~~~~~~~~~-~~l----~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 390 -----------TSYTLQEDESA-RGI----G-SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp -----------EEECCC-------CC----S-CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred -----------EEEecCCCCcc-cCC----C-CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCC
Confidence 00000000000 000 1 46799999999999444455 6789999998876544322 1345
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC------cccceEEEEEecCCCEEEEEcCCCcEEEEeCCCc
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG------HQNRITGLAFSPTLNALVSSGADAQLCMWSIDKW 956 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~------h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~ 956 (1134)
.|.++...+ ++.+.+ |+. +-+.+||..+++....... ....|.++...++|++.+... + -|..||..++
T Consensus 453 ~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 453 NVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGL 527 (795)
T ss_dssp CEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETT
T ss_pred eeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCC
Confidence 799999988 677665 445 4588999887765432211 235789999999998777654 4 4888998775
Q ss_pred ccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCC-CCCeEEEEEccCCCEEEEE
Q 001160 957 EKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+. . ..............|.++...++|++.+.+.. .+..||........+....+. ...|.++...++|.+.+++
T Consensus 528 ~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 528 DI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp EE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred eE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 53 1 11000000011146788999999997776554 788999855555544332222 3468999999999866544
Q ss_pred ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1036 FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1036 ~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
++-|..|+..+++.. .+....-++ ......-++...+ +|++++ |+.+| +..++..
T Consensus 604 --~~Gl~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 604 --NRGISCFNPETEKFR-NFTESDGLQ----SNQFNTASYCRTS-VGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp --TTEEEEEETTTTEEE-EECGGGTCS----CSCEEEEEEEECT-TSCEEE-EETTE-EEEECGG
T ss_pred --CCceEEEcCCCCcEE-EcCCcCCCc----cccCccCceeECC-CCeEEE-ecCCc-eEEEcHH
Confidence 456888998876543 332111111 1112223455555 665544 66777 4555544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-15 Score=162.55 Aligned_cols=251 Identities=12% Similarity=0.067 Sum_probs=183.7
Q ss_pred CCceEEEEeccCCCEEEEEe-C------------------------CeEEEEECCCCeEEEEec-CCCCceEEEEEcCCC
Q 001160 840 EESAACIALSKNDSYVMSAS-G------------------------GKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQD 893 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 893 (1134)
-..+.+++++|+|+++++.. + +.|.+||..+++.+..+. ++......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 56789999999999998887 4 379999999898877665 3456789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcCCce-EEEEe---------cCcccceEEEEEec-CCCEEEEEc-CCCcEEEEeCCCcccccc
Q 001160 894 NNIIAIGMEDSSVQIYNVRVDE-VKTKL---------KGHQNRITGLAFSP-TLNALVSSG-ADAQLCMWSIDKWEKLKS 961 (1134)
Q Consensus 894 ~~~lasg~~dg~i~iwd~~~~~-~~~~l---------~~h~~~i~~l~~s~-d~~~l~s~~-~D~~i~iWd~~~~~~~~~ 961 (1134)
++++++...++.|++||..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+. .++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEE
Confidence 8888888889999999976542 45555 34555789999999 888888886 6899999994 4443222
Q ss_pred eeeecCCC--CCCCCcCceEEEECCC-CcEEEE-EECCeEEEEeCC-CcceeccCCCCCCCCCeEEEEEcc------CCC
Q 001160 962 RFIQAPAG--RQSPLVGETKVQFHND-QTHLLV-VHESQISVYDSK-LECSRSWSPKDALPAPISSAIYSC------DGL 1030 (1134)
Q Consensus 962 ~~~~~~~~--~~~~~~~v~~~~fspd-g~~l~~-~~d~~v~vwd~~-~~~~~~~~~~~~h~~~v~~v~~s~------dg~ 1030 (1134)
........ .......+..++|+|+ |.++++ ..++.|++|+.. ++.+..+.. ..+...+.+++|+| +|+
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCC
Confidence 11111000 0001134789999999 555555 357899999995 777766543 34567899999999 333
Q ss_pred EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCC
Q 001160 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
..++...+..|++|+..+|+.+..+... ..+...+.+++++| +|+++++...+++|++|++..
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~-------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV-------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS-------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC-------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333334558999999999998877421 12335678999999 779999999999999999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-13 Score=161.01 Aligned_cols=189 Identities=13% Similarity=0.084 Sum_probs=144.3
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc--CCCceeEecCCCCcEE
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD--YLGSRVDYDAPGNWCT 545 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~ 545 (1134)
+++++...++.|.++|..+++.+.++... ..+..+.++|+ |.++++++.|+.|.+||+. +.+....+.. +....
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~ 243 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 243 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence 37888899999999999999999888643 35678888775 4899999999999999995 6666655554 44568
Q ss_pred EEEEC----CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc----------CcceEEEEEeCCCCEEEE-EeCCC
Q 001160 546 MMAYS----ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR----------KRSLGVVQFDTTRNRFLA-AGDEF 610 (1134)
Q Consensus 546 ~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~-~~~dg 610 (1134)
.++|+ |||++++++.. ..+.+.++|..+.+.+..+.... ...+..+..++++..++. ...+|
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~---~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g 320 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 320 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred eeEEccccCCCCCEEEEEEc---cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence 99999 69999998875 46789999999999888765321 225677888888766554 55789
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCc
Q 001160 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.|.++|..+.+.+........ .....+.|+|+|++++++. .++.|.++|..++
T Consensus 321 ~v~~vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 321 KILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred eEEEEecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 999999987654333222111 2456889999999887765 4789999998776
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-10 Score=144.78 Aligned_cols=536 Identities=9% Similarity=0.049 Sum_probs=323.2
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++...++|. |.+ |+. +.+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~-lWi-gT~-~Gl~~yd~~~~~f~~~------~~~----------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR-VWI-GTR-DGLSRYDEEKDIFQNF------FYE----------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC-EEE-EES-SCEEEEETTTTEEEEE------CCE----------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC-EEE-EeC-CchheeCCCCCeEEec------ccc----------ccCCCceEEEEEECCCCCEEEE
Confidence 35799999999997 443 554 4589999876543211 000 0000012889988888876654
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecc-cCC-eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe-cCCCCCeEE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAH-VGG-VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAPVYS 502 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~ 502 (1134)
. . +.+..||..+++..... .++ ... |.++...+++. +..|+.++.|..||..+++..... ..+...|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 4 45889998765321100 011 123 88888888886 334565556899998777653321 123456888
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC-------CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-------PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
+..... ..+..++.++-+.+||..+.+....... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQSP---TRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEEET---TEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEcCC---CCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 876543 3455566555688898776543322111 235799999999988766542 2 38999988
Q ss_pred CCeeEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC----CCCCCcceEEEccCCC
Q 001160 576 EGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD----GGLPASPRLRFNKEGS 645 (1134)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s~d~~ 645 (1134)
++........ -....|.++...++|... .|+.++-|..|+..+.......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765433211 122368999999888654 5666677888987655432221111 0123588888888887
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCcc
Q 001160 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1134)
+. .|+.++.|..|+..++ ... .+.....
T Consensus 370 lW-iGt~~~Gl~~~~~~~~-~~~-~~~~~~~------------------------------------------------- 397 (795)
T 4a2l_A 370 LW-IGTNDGGLNLYNPITQ-RFT-SYTLQED------------------------------------------------- 397 (795)
T ss_dssp EE-EEESSSCEEEECTTTC-CEE-EECCC---------------------------------------------------
T ss_pred EE-EEECCCCeEEEcCCCC-cEE-EEecCCC-------------------------------------------------
Confidence 44 5777778888887654 110 0000000
Q ss_pred CCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeeccccc
Q 001160 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTE 805 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~ 805 (1134)
. .. . ......|.++...++|+.|..++.++-+..|+....+
T Consensus 398 ----------------------------~---~~----~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 398 ----------------------------E---SA----R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp -------------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred ----------------------------C---cc----c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 0 00 0 0023457888888888745556665667777754321
Q ss_pred CCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecC------
Q 001160 806 RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS------ 879 (1134)
Q Consensus 806 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~------ 879 (1134)
. ..+...... .+ ...|.++...++|.+.+... +.+.+||..+++.......
T Consensus 439 ~------------~~~~~~~~~---------l~-~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 439 V------------ENFNQRNSQ---------LV-NENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp E------------EEECTTTSC---------CS-CSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred E------------EEeecCCCC---------cC-CCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEcccccccccc
Confidence 1 000000000 12 56799999999998776655 5688999887765433221
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-------CcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-------GHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
....|.++...+ ++++.+ |+. +-|..||..+++. .+. .....|.++...++|++.++.. . -|..||
T Consensus 496 ~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d 568 (795)
T 4a2l_A 496 VSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFN 568 (795)
T ss_dssp CCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEE
T ss_pred CCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeEC
Confidence 235789999988 777665 444 5688899887765 332 2345799999999998776554 3 488899
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCC-CCe--EEEEEccCC
Q 001160 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALP-API--SSAIYSCDG 1029 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~-~~v--~~v~~s~dg 1029 (1134)
..+++.. ......+-. ...|.++...++|++.+++ ++.|..|+.+......+...++.. ..+ .++...++|
T Consensus 569 ~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G 642 (795)
T 4a2l_A 569 EKDKQIK---RYNTTNGLP--NNVVYGILEDSFGRLWLST-NRGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVG 642 (795)
T ss_dssp TTTTEEE---EECGGGTCS--CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTS
T ss_pred CCCCcEE---EeCCCCCCc--hhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCC
Confidence 8775422 122222221 1457888999999877766 577888998666666554443332 233 567778888
Q ss_pred CEEEEEecCCcEEEEeCC
Q 001160 1030 LLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1030 ~~l~~~~~dg~I~vwd~~ 1047 (1134)
++++ |+.+| +..++..
T Consensus 643 ~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 643 QMYF-GGING-ITTFRPE 658 (795)
T ss_dssp CEEE-EETTE-EEEECGG
T ss_pred eEEE-ecCCc-eEEEcHH
Confidence 8555 55666 5555543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=161.53 Aligned_cols=263 Identities=9% Similarity=0.111 Sum_probs=179.0
Q ss_pred CCeeEEEEecCCCeEEEEEe--------CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 347 SNVMSMDFHPQQQTILLVGT--------NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
..+..+++ ||++++++.. .++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 46778888 8886655432 26689999998875321 2 4588999999
Q ss_pred CCCEEEEEeCC---C--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC------------------
Q 001160 419 DGLMLGVAFSK---H--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD------------------ 475 (1134)
Q Consensus 419 dg~~las~~~d---g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~------------------ 475 (1134)
||++||.++.+ + .|.+|++.+++... +..+.. +..++|+|||+ .|+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceee
Confidence 99999988654 3 47788888765432 222333 99999999999 5555542
Q ss_pred ---------CCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCC-------eEEEEEccCCCceeEecC
Q 001160 476 ---------DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-------KIKAWLYDYLGSRVDYDA 539 (1134)
Q Consensus 476 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 539 (1134)
...|++||+.+++.+..+.. . .+..++|+| +| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25799999999887555554 4 788889976 44 677665542 44555555 333333333
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCC----CCCcEEEEeCCCCeeEEEecCccCcceEE-EEEeCCCCEEEEEeCCCeEEE
Q 001160 540 PGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNESEGAIKRTYSGFRKRSLGV-VQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 614 (1134)
+ ..+..+ +|||++|+..+.+.. ....|++|| +++.......+.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 444444 999999987764321 135788888 5655444444433 6775 8999 88 8888899999999
Q ss_pred EECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE-EEEECC
Q 001160 615 WDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI-KILANS 662 (1134)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i-~iw~~~ 662 (1134)
| +.+++....+.. ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 34688999999 677777776655 777765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.1e-15 Score=179.56 Aligned_cols=250 Identities=10% Similarity=-0.014 Sum_probs=176.0
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCccceeeEEecccCCee---------EEEEe--cCCCcEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVA--FSKHIVHLYTYNPTGELRQHLEIDAHVGGVN---------DIAFA--HPNKQLC 469 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~--~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~d~~~~~ 469 (1134)
.+.+|...|..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+ .
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~--~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGG--P 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSS--C
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCC--e
Confidence 466799999999999887777777 558899999975444333 4556666666 67676 9999 4
Q ss_pred -EEEEc-CCCcEEEEECC--CCeeeEEecC-----CCCCeEEEEeeccCCccEEEEEecC----------CeEEEEEccC
Q 001160 470 -IVTCG-DDKMIKVWDVV--AGRKQYTFEG-----HEAPVYSVCPHHKESIQFIFSTAID----------GKIKAWLYDY 530 (1134)
Q Consensus 470 -l~sg~-~d~~i~iwd~~--~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d----------~~i~~wd~~~ 530 (1134)
|+.++ .+..|.+|++. .+.....+.. |...+.+++|+|++ +.|++++.+ ..|++||+.+
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER--GEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT--TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC--CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 55443 36677777765 2033456665 66778899998855 889888877 5899999987
Q ss_pred C-----CceeEec-CCCCcEEEEEECCCCCEEEEEeeCCC----CCCcEEEEeCC-CC---eeEEEecCccCcceEEEEE
Q 001160 531 L-----GSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKE----GESHLVEWNES-EG---AIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 531 ~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~v~~~~~ 596 (1134)
. .....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..+.|
T Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~~ 249 (662)
T 3azo_A 171 SAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAEW 249 (662)
T ss_dssp TTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEEE
T ss_pred CccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceEE
Confidence 2 3344444 55567888999999999998775331 13579999999 57 33333333333 7889999
Q ss_pred eCCCCEEEEEeCCC--eEEEEECCCCeeEEEEeCCCCC------CCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 597 DTTRNRFLAAGDEF--QIKFWDMDNMNMLTTVDADGGL------PASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 597 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+|||+.+++++.++ .|++||+.+++.......+... ..+..++|+++++++++++. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777777 6777777677654433322111 01457888888888888888 88888843
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-14 Score=157.03 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=182.4
Q ss_pred CCeeEEEEecCCCeEEEEEeCC------------------------CcEEEEEccCccccccccceeecccccccccccc
Q 001160 347 SNVMSMDFHPQQQTILLVGTNV------------------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNA 402 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1134)
+.|.+++++|+|+ ++++.+.+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 4799999999997 67777666 4789999887775432
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccceeeEE---------ecccCCeeEEEEec-CCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG-ELRQHLEI---------DAHVGGVNDIAFAH-PNKQLCIV 471 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~l~~s~-d~~~~~l~ 471 (1134)
.-.++-.....++++|+|+++++...++.|++||.++.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 012344578899999999988888889999999987542 222 23 23445689999999 676 677
Q ss_pred EEc-CCCcEEEEECCCCeeeEEecC----------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--
Q 001160 472 TCG-DDKMIKVWDVVAGRKQYTFEG----------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-- 538 (1134)
Q Consensus 472 sg~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-- 538 (1134)
+.+ .++.|++|| .+|+.+..+.. +-.....++++++. +.++++...++.|++||.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 67887777642 22348899998752 3788888889999999998777766663
Q ss_pred CCCCcEEEEEECCCCCEEEEEee---CCCCCCcEEEEeCCCCeeEEEec---CccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 539 APGNWCTMMAYSADGTRLFSCGT---SKEGESHLVEWNESEGAIKRTYS---GFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 539 ~~~~~v~~~~~s~~~~~l~~~~~---~~~~~~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
.....+.+++|+| +..+.+.+. .......|++||..+++.+..+. .+.. ....++++|+|..+++...++.|
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEE
Confidence 3456788999999 444433321 01235579999999999998874 3333 68899999999777778889999
Q ss_pred EEEECCC
Q 001160 613 KFWDMDN 619 (1134)
Q Consensus 613 ~iwd~~~ 619 (1134)
++|++..
T Consensus 316 ~~~~~~~ 322 (329)
T 3fvz_A 316 WKFTLTE 322 (329)
T ss_dssp EEEEEEE
T ss_pred EEEeCCc
Confidence 9999753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-13 Score=157.54 Aligned_cols=274 Identities=15% Similarity=0.095 Sum_probs=196.1
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYN- 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~- 438 (1134)
.++++...++.|.++|..+++.+.+ +. ....+..++|||||+++++++.++.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 4777888899999999999887653 11 23356789999999999999999999999995
Q ss_pred -CCCccceeeEEecccCCeeEEEEe----cCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC-----------CCCeEE
Q 001160 439 -PTGELRQHLEIDAHVGGVNDIAFA----HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH-----------EAPVYS 502 (1134)
Q Consensus 439 -~~~~~~~~~~~~~h~~~v~~l~~s----~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h-----------~~~v~~ 502 (1134)
+++.+. .+... .....++|+ |||+. ++++...+++|.++|..+.+.+..+... ...+..
T Consensus 228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence 655444 34332 346789999 69995 4445556799999999999988876521 125677
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
+..++... .++++...+|.|.++|.......... .........+.|+|+|++++++.. .++.|.++|..+++.+.
T Consensus 303 i~~s~~~~-~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 303 ILASHYRP-EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEECSSSS-EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEEE
T ss_pred EEEcCCCC-EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEEE
Confidence 77766542 56677777899999998765433221 123445678899999999987764 36679999999999887
Q ss_pred EecC-ccCc-ceEEE-EEeCCCCEEEE-Ee-CCCeEEEEECCC-------CeeEEEEeCCCCCCCcceEEEccCCCEEEE
Q 001160 582 TYSG-FRKR-SLGVV-QFDTTRNRFLA-AG-DEFQIKFWDMDN-------MNMLTTVDADGGLPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 582 ~~~~-~~~~-~v~~~-~~~~~~~~l~~-~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 649 (1134)
.+.. .... +-... .++|++..+.+ +. .++.|.++|..+ .+.+.++...+. .-..+..+|+++++.+
T Consensus 379 ~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 379 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYV 456 (567)
T ss_dssp EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEE
T ss_pred EEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEE
Confidence 7765 2210 11112 26887555544 43 568999999987 667888876532 2245788999999988
Q ss_pred EeC-------CCcEEEEECCCc
Q 001160 650 TTS-------DNGIKILANSDG 664 (1134)
Q Consensus 650 ~~~-------dg~i~iw~~~~~ 664 (1134)
... .++|.++|+.+.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGC
T ss_pred ecCCCCCcccCceEEEEECCcc
Confidence 663 358999998654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=178.51 Aligned_cols=285 Identities=9% Similarity=-0.014 Sum_probs=187.4
Q ss_pred CCCCeeEEEEecCCCeEEEEE--eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE---------E
Q 001160 345 QGSNVMSMDFHPQQQTILLVG--TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN---------R 413 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~ 413 (1134)
|...|..++|++++- +++++ +.++...||....+..... +..|...+. .
T Consensus 22 ~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~~~~~~ 81 (662)
T 3azo_A 22 RSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFEYSGFP 81 (662)
T ss_dssp TCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGGTCCCC
T ss_pred cCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccccCCcc
Confidence 566899999998864 55555 5578899999644432221 333444444 5
Q ss_pred EEEc--CCCCE-EEEEeC-CCeEEEEEcC--C-CCccceeeEEec-----ccCCeeEEEEecCCCcEEEEEEcCC-----
Q 001160 414 CVWG--PDGLM-LGVAFS-KHIVHLYTYN--P-TGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCGDD----- 476 (1134)
Q Consensus 414 i~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~sg~~d----- 476 (1134)
..|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~ 155 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEG 155 (662)
T ss_dssp EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSS
T ss_pred ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCC
Confidence 5565 99998 877654 5667777765 2 33 22 3334 667889999999999 67777766
Q ss_pred -----CcEEEEECCC------CeeeEEec-CCCCCeEEEEeeccCCccEEEEEecC--------CeEEEEEcc-CC---C
Q 001160 477 -----KMIKVWDVVA------GRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTAID--------GKIKAWLYD-YL---G 532 (1134)
Q Consensus 477 -----~~i~iwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~---~ 532 (1134)
..|++||+.+ ++ ...+. .+...+..++|+|+ |++|+.++.+ ..|++||+. ++ .
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpD--G~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPD--GRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTT--SSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCC--CCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 54 45565 66677888888775 4888887755 479999998 45 2
Q ss_pred ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc-------ceEEEEEeCCCCEEEE
Q 001160 533 SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR-------SLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~ 605 (1134)
.......+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|+|++..+++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333444678999999999995555432 23347888888777765444433221 1457889999999999
Q ss_pred EeCCCeEEEE--ECCCCeeEEEEeCCCCCCCcceE-EEccCCCEEEEEeCCC--cEEEEECCCc
Q 001160 606 AGDEFQIKFW--DMDNMNMLTTVDADGGLPASPRL-RFNKEGSLLAVTTSDN--GIKILANSDG 664 (1134)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~~~~~dg--~i~iw~~~~~ 664 (1134)
++. +.+++| |+.+++ +..+..+ ...+..+ +++.+.-++++++.+. .|.+||+.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 665555 5555544 2345555 4433333334445554 4555566555
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-13 Score=147.49 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=178.6
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEE---ecccCCeeEEEEe-cCCCcEEEEEEc-CCCcEE
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFA-HPNKQLCIVTCG-DDKMIK 480 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s-~d~~~~~l~sg~-~d~~i~ 480 (1134)
++-..+.+++++++|+++++...++.|.+||.+ ++.+...... .+|...+..+++. +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 4433311100 1244578999995 6665 555553 388999
Q ss_pred EEECCCCeeeEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec--CCCCcEEEEEECCCCCEEE
Q 001160 481 VWDVVAGRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD--APGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~ 557 (1134)
+|| .+++.+..+.. +...+.+++++++ |.++++...++.|.+||.. ++....+. .+...+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67777776643 4467889999774 4777877788999999965 34444443 3345689999999998766
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCcc-CcceEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeeEEEEeCCCCCCCc
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFR-KRSLGVVQFDTTRNRFLAAGDEF-QIKFWDMDNMNMLTTVDADGGLPAS 635 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v 635 (1134)
+... ++.|++||. +++.+..+.... ...+..++++++|+.+++...++ .|.+|+. +++.+..+..+.....+
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 6542 667999997 456666665432 12678899999998888887775 9999996 56667777655433346
Q ss_pred ceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 636 PRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 636 ~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.+++++|+|+++++ +.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 78999999987776 67999999997543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=168.66 Aligned_cols=249 Identities=8% Similarity=0.010 Sum_probs=177.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCc-
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKH-----IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKM- 478 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~- 478 (1134)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 34556789999999999999876543 899999999876542 221 22377899999999 6777766655
Q ss_pred ---------------EEEEECCCCee----eEEecCCCCCeEEEEeeccCCccEEEEEec-----CCeEEEEEccC----
Q 001160 479 ---------------IKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAI-----DGKIKAWLYDY---- 530 (1134)
Q Consensus 479 ---------------i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-----d~~i~~wd~~~---- 530 (1134)
|++|++.+++. +.....|...+..+.|+|++ ++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999988763 22333355667888887754 77777764 56899999986
Q ss_pred --CC-ceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccC-cceEEEEEeCCCCEEE
Q 001160 531 --LG-SRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRK-RSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 604 (1134)
+. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 43 34455555554544 48899999887764333356799999987642 234444433 3677889987777777
Q ss_pred EEeCCCe--EEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001160 605 AAGDEFQ--IKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .++|..||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 7888874 666787778777777765 346788899999877664432 478999999877
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-09 Score=133.87 Aligned_cols=590 Identities=11% Similarity=0.092 Sum_probs=338.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-.++|... .|+.+| +..||-.+ |+.+... ... .. ...-....|.++.-.++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~--------f~~~~~~-~~~-~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGTR--------FITYYKE-EQS-SS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSSS--------EEEECCC-SSC-SS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCCc--------eEEEEcC-CCC-Cc--cccccccccceEEEcCCCCEEEE
Confidence 3589999999999633 456555 66676332 1111110 000 00 00012346999999988884556
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEe-----c---ccCCeeEEEEec--CCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEID-----A---HVGGVNDIAFAH--PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~l~~s~--d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+.++-+..||..+++.. .+. . ....|.++.... ++. |..++.++.|..+|..+++... +..
T Consensus 83 gt~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~ 154 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNK 154 (781)
T ss_dssp EESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-EST
T ss_pred EeCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-ecc
Confidence 777745999998875421 121 0 123588888777 664 4445545568999987776433 321
Q ss_pred ------CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 496 ------HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 496 ------h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
....|.++..... ..|..++.++-+..||..+.+..... ......|.++...++|...+...
T Consensus 155 ~~~~~l~~~~i~~i~~d~~---g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-- 229 (781)
T 3v9f_A 155 STVPALPSEQTWTATEAED---GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-- 229 (781)
T ss_dssp TTCTTCSCCCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET--
T ss_pred CcccCCCccceEEEEECCC---CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC--
Confidence 1345777766443 35556777766888987765432211 11235789999999888776542
Q ss_pred CCCCCcEEEEeCCCCeeEEEecC------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-------CC
Q 001160 563 KEGESHLVEWNESEGAIKRTYSG------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-------AD 629 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~ 629 (1134)
. -+.+||..+++...-... .....|.++...++|. +..|+..+-|.++|..++....... ..
T Consensus 230 ---~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~ 304 (781)
T 3v9f_A 230 ---K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREG 304 (781)
T ss_dssp ---T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBC
T ss_pred ---C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCC
Confidence 2 489999877654432211 1223688888888775 4455554568899987765432211 10
Q ss_pred -----CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccccc
Q 001160 630 -----GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1134)
Q Consensus 630 -----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
-....|.++...++|. |-.|+.++-|..++..++ . +..+....
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~-~-~~~~~~~~----------------------------- 352 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPP-T-FHTWSYSP----------------------------- 352 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCC-S-CEEEC--------------------------------
T ss_pred CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCC-c-ceeeccCc-----------------------------
Confidence 1123578888888886 445676777888876544 1 00000000
Q ss_pred ccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCC
Q 001160 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1134)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 784 (1134)
. + . .+.......|.++...++|
T Consensus 353 ------~---------------------------------------~-~------------~~~~l~~~~v~~i~~d~~g 374 (781)
T 3v9f_A 353 ------T---------------------------------------Q-M------------NESSLSNKVVSSVCDDGQG 374 (781)
T ss_dssp ----------------------------------------------C-C------------CSSCCSSSCEEEEEECTTS
T ss_pred ------c---------------------------------------c-c------------ccCCCCCcceEEEEEcCCC
Confidence 0 0 0 0000023457888888888
Q ss_pred cceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEE
Q 001160 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVS 864 (1134)
Q Consensus 785 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~ 864 (1134)
. |..++.++-+..|+....... .+. . ..... ...|.+++..++|.+.+...++.+.
T Consensus 375 ~-lWigt~~~Gl~~~~~~~~~~~------------~~~-~---------~~~~~-~~~v~~i~~d~~g~lWigt~~~Gl~ 430 (781)
T 3v9f_A 375 K-LWIGTDGGGINVFENGKRVAI------------YNK-E---------NRELL-SNSVLCSLKDSEGNLWFGTYLGNIS 430 (781)
T ss_dssp C-EEEEEBSSCEEEEETTEEEEE------------CC---------------CC-CSBEEEEEECTTSCEEEEETTEEEE
T ss_pred C-EEEEeCCCcEEEEECCCCeEE------------Ecc-C---------CCCCC-CcceEEEEECCCCCEEEEeccCCEE
Confidence 7 555555555777764321110 000 0 00002 5679999999888877744467899
Q ss_pred EEECCCCeEEEEec--CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCc-----ccceEEEEEecCCC
Q 001160 865 LFNMMTFKVMTMFM--SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGH-----QNRITGLAFSPTLN 937 (1134)
Q Consensus 865 vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-----~~~i~~l~~s~d~~ 937 (1134)
.+|..+++...... .....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 431 YYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp EECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred EEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC
Confidence 99988776543321 1346799999988 666554 555 56889998876543332222 35799999999998
Q ss_pred EEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCC-
Q 001160 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDAL- 1016 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h- 1016 (1134)
+.+....+| |..||..+++... .....+. +...|.++...++|++.+.+.+|-|..||........+....+.
T Consensus 508 lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~ 581 (781)
T 3v9f_A 508 FWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLP 581 (781)
T ss_dssp EEEEESSSC-EEEECTTCCEEEE---ECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCS
T ss_pred EEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCC
Confidence 776554345 7889887654211 1111111 12468899999999987776644448899855544444332221
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEE
Q 001160 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1096 (1134)
Q Consensus 1017 ~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~v 1096 (1134)
...|.++...++|.+.+ ++.+| |..|+..+++.. .+....-++ ......-++...+ +|++++ |+.+| +..
T Consensus 582 ~~~i~~i~~d~~g~lW~-~t~~G-l~~~~~~~~~~~-~~~~~dGl~----~~~f~~~~~~~~~-~G~l~~-g~~~G-l~~ 651 (781)
T 3v9f_A 582 NTHIRAISEDKNGNIWA-STNTG-ISCYITSKKCFY-TYDHSNNIP----QGSFISGCVTKDH-NGLIYF-GSING-LCF 651 (781)
T ss_dssp CCCCCEEEECSSSCEEE-ECSSC-EEEEETTTTEEE-EECGGGTCC----SSCEEEEEEEECT-TSCEEE-EETTE-EEE
T ss_pred CceEEEEEECCCCCEEE-EcCCc-eEEEECCCCceE-EecccCCcc----ccccccCceEECC-CCEEEE-ECCCc-eEE
Confidence 34688999998888555 44454 888888765432 222111111 1112223455555 665554 67778 555
Q ss_pred EecCC
Q 001160 1097 VEPSD 1101 (1134)
Q Consensus 1097 W~~~~ 1101 (1134)
++...
T Consensus 652 f~p~~ 656 (781)
T 3v9f_A 652 FNPDI 656 (781)
T ss_dssp ECSCC
T ss_pred EChhh
Confidence 66543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=151.82 Aligned_cols=271 Identities=11% Similarity=0.073 Sum_probs=187.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..|.+++|+|++.. ++..+.++.++.|. ++.... +..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 46788899999874 45556788889883 222211 34466678999999999988888
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEEec--CCCCCe
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTFE--GHEAPV 500 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~~--~h~~~v 500 (1134)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998875432 2224667899999999998 67766666 689999988877553433 244578
Q ss_pred EEEEeeccCCccEEEEEec------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 501 YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
.+++++++ |.++++... .+.|..||..+.+... +......+..++|+|+++.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~~--g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDSK--GGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECTT--SCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECCC--CCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 89999775 466666553 2456666554433322 2222335788999999997765542 2567999998
Q ss_pred CC-CeeEEE--------ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC----CCCcceEEEc
Q 001160 575 SE-GAIKRT--------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG----LPASPRLRFN 641 (1134)
Q Consensus 575 ~~-~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s 641 (1134)
.+ +..... +.++ ..+..++++++|+.+++...++.|.+||. +++.+..+..+.. ...+.+++|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred cCCCcCcccccceEEEecCCC--CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence 63 332221 1221 25778999999998888878899999998 5666776654421 1247899999
Q ss_pred cCCCEEEEEeCCC
Q 001160 642 KEGSLLAVTTSDN 654 (1134)
Q Consensus 642 ~d~~~l~~~~~dg 654 (1134)
+|+..|++++.++
T Consensus 289 ~dg~~L~v~~~~g 301 (333)
T 2dg1_A 289 PGTNQLIICSNDI 301 (333)
T ss_dssp TTSCEEEEEEECG
T ss_pred CCCCEEEEEeCcc
Confidence 9987777666653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-13 Score=150.93 Aligned_cols=273 Identities=13% Similarity=0.076 Sum_probs=185.0
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
..|.+++|++++..++....++.++.|.-. .... +.. + ...+.+++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~~--~-~~~~~~~~~~~~g 56 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-ISK--K-GLQLEGLNFDRQG 56 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EES--S-CCCEEEEEECTTS
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Eec--c-CccccCcEECCCC
Confidence 456778899998888877778877777211 0000 111 2 4567899999999
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC----CcEEEEEcCCceEEEEec--Cccc
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVDEVKTKLK--GHQN 925 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d----g~i~iwd~~~~~~~~~l~--~h~~ 925 (1134)
++++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|.+||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9877776 78999999998877665545667899999999 88888777666 689999998876543333 3445
Q ss_pred ceEEEEEecCCCEEEEEcC------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeE
Q 001160 926 RITGLAFSPTLNALVSSGA------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQI 997 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v 997 (1134)
.+.+++++|+|+++++... .+.|..|+.++++... ..... ..+..++|+|||++|+++ .++.|
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i 206 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRL 206 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeE
Confidence 7899999999998887654 2456666655544221 11111 246789999999977664 36899
Q ss_pred EEEeC--CCcceecc-----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCC
Q 001160 998 SVYDS--KLECSRSW-----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1070 (1134)
Q Consensus 998 ~vwd~--~~~~~~~~-----~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1134)
.+||. .+.....+ ....++ ..+..++++++|+++++...++.|.+||. +++.+..+.... ...++..
T Consensus 207 ~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~----~~~g~~~ 280 (333)
T 2dg1_A 207 HRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG----RDEGHML 280 (333)
T ss_dssp EEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT----GGGTCSC
T ss_pred EEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCC----Ccccccc
Confidence 99998 33333211 111111 46788999999998887777899999998 466665553221 0001112
Q ss_pred ccEEEeecCCCCCEEEEEeCC
Q 001160 1071 HPLVIAPHPSEPNQIALGMSD 1091 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~D 1091 (1134)
.+.+++|+| |++.|..++.+
T Consensus 281 ~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 281 RSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp BCCEEEECT-TSCEEEEEEEC
T ss_pred CcceEEECC-CCCEEEEEeCc
Confidence 566888988 66666555554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-13 Score=151.14 Aligned_cols=220 Identities=10% Similarity=0.090 Sum_probs=152.7
Q ss_pred ceEEEEeccCCCEEEEEe-C---Ce--EEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC------------
Q 001160 842 SAACIALSKNDSYVMSAS-G---GK--VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED------------ 903 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d------------ 903 (1134)
.+..++|||||++||..+ + +. |.+||+.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 367899999999999886 3 33 888899888776555433 3 99999999 88888877642
Q ss_pred ---------------CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCC-------cEEEEeCCCcccccc
Q 001160 904 ---------------SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA-------QLCMWSIDKWEKLKS 961 (1134)
Q Consensus 904 ---------------g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~-------~i~iWd~~~~~~~~~ 961 (1134)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999999887555554 3 78899999999 877776542 4455555544321
Q ss_pred eeeecCCCCCCCCcCceEEEECCCCcEEEEEE-C--------CeEEEEeCCCcceeccCCCCCCCCCeEE-EEEccCCCE
Q 001160 962 RFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-E--------SQISVYDSKLECSRSWSPKDALPAPISS-AIYSCDGLL 1031 (1134)
Q Consensus 962 ~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d--------~~v~vwd~~~~~~~~~~~~~~h~~~v~~-v~~s~dg~~ 1031 (1134)
.+... + .+.. ++|||++|+... + ..|.+|| .++. ..+. ..|...+.. +.|+ |+ +
T Consensus 212 -~l~~~-~------~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~-~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMFEK-V------SFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEV-MGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEEEE-E------SEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCE-EESS--TTCCSEEEEEEEET-TE-E
T ss_pred -EeccC-c------ceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCce-Eecc--ccCCcccCCccEEc-Cc-E
Confidence 11111 1 1233 399999988743 2 3688888 4443 3332 234667886 9999 98 8
Q ss_pred EEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcE-EEEecC
Q 001160 1032 VYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAV-HVVEPS 1100 (1134)
Q Consensus 1032 l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v-~vW~~~ 1100 (1134)
+++++.++.+++| +.+|+....+. +...+.+++++| .++++++.++.. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-----------~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-----------GRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-----------SSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-----------CCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 88665433221 123455788887 578888877765 777775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-13 Score=145.62 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=189.3
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcc-cce
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQ-NRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~i 927 (1134)
.+++|++++ ++.|.+||.++++.+..+..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998776 4789999999 899888 45788999998 899999988653 478
Q ss_pred EEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeeecC-CCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCC
Q 001160 928 TGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAP-AGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL 1004 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~ 1004 (1134)
.++.+.+||+++++.+. ++.|..+|. +++.+....+... .++. .....+++.++|+++++. .++.|.+||.++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 89999999999999887 777777776 5554433322211 1111 234567889999999985 578999999998
Q ss_pred cceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCE
Q 001160 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQ 1084 (1134)
Q Consensus 1005 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 1084 (1134)
+.+..+... ....++.+.++|.++++++.++.|..||..+|+.+.++..... + . .....+.+++..+ +|++
T Consensus 156 ~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-~--~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 156 QLLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-G--VQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp CEEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-S--CCCSEEEEEEECT-TSCE
T ss_pred CEEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-C--ccccccccceEcC-CCCE
Confidence 877766542 3456788899999999988888999999999999988753210 0 0 1124566777777 7888
Q ss_pred EEEEeCC--------CcEEEEec-CCCccccCCCCCCCCCCCCC
Q 001160 1085 IALGMSD--------GAVHVVEP-SDAELKWGGTPSQDNGPLPS 1119 (1134)
Q Consensus 1085 l~s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1119 (1134)
+++.+.. +..++.++ .+++..|+.....+-|.++.
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8887421 23355665 57788898888877777765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-13 Score=165.82 Aligned_cols=246 Identities=8% Similarity=-0.011 Sum_probs=172.0
Q ss_pred CCeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+.+++|||||++++++.+.+| .|++||+.+++.+.. ......+..++|||||+.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--------------------~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--------------------VLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--------------------EEEEECSCCEEECTTSSE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--------------------cccCcccceEEEEeCCCE
Confidence 36889999999996555544444 899999999876531 012223678999999999
Q ss_pred EEEEeCCCe----------------EEEEEcCCCCccceeeEEe--cccCCeeEEEEecCCCcEEEEEEcC-----CCcE
Q 001160 423 LGVAFSKHI----------------VHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGD-----DKMI 479 (1134)
Q Consensus 423 las~~~dg~----------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i 479 (1134)
|+.++.++. |++|++.+++.... ..+. .|...+..+.|+|||+ +|+.++. +..|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-~v~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~~l 261 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-LCAEFPDEPKWMGGAELSDDGR--YVLLSIREGCDPVNRL 261 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSC--EEEEEEECSSSSCCEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccce-EEeccCCCCeEEEEEEEcCCCC--EEEEEEEccCCCccEE
Confidence 999988765 99999988753211 1222 2455688999999999 4554432 6789
Q ss_pred EEEECCC------Ce-eeEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCCCc--eeEecCCC--CcE
Q 001160 480 KVWDVVA------GR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLGS--RVDYDAPG--NWC 544 (1134)
Q Consensus 480 ~iwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~--~~~~~~~~--~~v 544 (1134)
++||+.+ +. ....+..+...+... |++++ ..|+..+. .+.|.+||+.+... ...+..+. ..+
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 262 WYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEECcccccccCCccceEEeeCCCCcEEEE-EeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 9999986 53 456666676666553 65544 55555544 23699999987652 23333333 368
Q ss_pred EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-e---CCCeEEEEECCCC
Q 001160 545 TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNM 620 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~ 620 (1134)
..++|++++.++++... ++...|++|++.+|+.+..+..+.. .+..++++|+++.++.. + ..+.|+.||+.++
T Consensus 339 ~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 88999877666666654 3344688889878887788877644 78889999999776643 2 4578999999887
Q ss_pred e
Q 001160 621 N 621 (1134)
Q Consensus 621 ~ 621 (1134)
+
T Consensus 416 ~ 416 (710)
T 2xdw_A 416 E 416 (710)
T ss_dssp S
T ss_pred c
Confidence 7
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=167.69 Aligned_cols=246 Identities=11% Similarity=-0.030 Sum_probs=168.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCccceeeEEecccCCe--eEEEEecCCCcEEEEEEcCCC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGV--NDIAFAHPNKQLCIVTCGDDK 477 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v--~~l~~s~d~~~~~l~sg~~d~ 477 (1134)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+.. .+...+ ..++|+|||+ .|+.++.|.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~ 189 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPT 189 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecC
Confidence 3566789999999999999944 4457899999999875411 122222 6899999999 677777766
Q ss_pred c-------------EEEEECCCCe----eeEEecCCCCCeEEEEeeccCCccEEEEEecCC----eEEEEEccCCCceeE
Q 001160 478 M-------------IKVWDVVAGR----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG----KIKAWLYDYLGSRVD 536 (1134)
Q Consensus 478 ~-------------i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~ 536 (1134)
. |++|++.++. .+.....|...+.++.|+|++ ++|+.++.++ .|.+|+..++. ...
T Consensus 190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~-~~~ 266 (695)
T 2bkl_A 190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKD-FRL 266 (695)
T ss_dssp CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSS-CEE
T ss_pred CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCc-eEE
Confidence 5 9999999876 333444466778889997755 7777777665 66677654443 333
Q ss_pred ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee---EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEE
Q 001160 537 YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 537 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
+..+...+....+ ++|+ ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..+
T Consensus 267 l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 267 LVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp EEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred eecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444445555556 6777 555443222468899999987753 333333324367888888 666777888899888
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001160 614 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 614 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
+|.+. +++....+..+. ...+..++++|+++.++.... .++|++||+.++
T Consensus 344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 88655 355555554432 235677889999987774433 478999999877
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-13 Score=147.44 Aligned_cols=241 Identities=11% Similarity=0.056 Sum_probs=171.8
Q ss_pred CceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ ++++.++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 445677774 344444444 7999999999999988886 346789999998 776555554899999999999998877
Q ss_pred ecCcc-----cceEEEEEecCCCEEEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE
Q 001160 920 LKGHQ-----NRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993 (1134)
Q Consensus 920 l~~h~-----~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~ 993 (1134)
+.... .....+++ .+++++++.. .++.|.+||..+++..... .. + ..+..++++|+|++++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--TI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE--EC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--Ec--C-----CCccceEEcCCCCEEEEEC
Confidence 66433 14567777 4555555543 4889999999998754322 11 1 2356889999999877743
Q ss_pred -C----------CeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccc
Q 001160 994 -E----------SQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYI 1061 (1134)
Q Consensus 994 -d----------~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~ 1061 (1134)
+ +.|.++|. +++....+.... ......++|+||+++|+++.. .|.+||..+++...... .
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~----~ 262 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPF----L 262 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCS----B
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeee----e
Confidence 3 68999999 454444443322 246899999999999988755 89999999887642111 1
Q ss_pred cccccCCCCccEEEeecCCCCCEEEEE----eCCCcEEEEecCCCccccC
Q 001160 1062 PTYAVSNTAHPLVIAPHPSEPNQIALG----MSDGAVHVVEPSDAELKWG 1107 (1134)
Q Consensus 1062 ~~~~~~~~~~~~~~~~~~~d~~~l~s~----~~Dg~v~vW~~~~~~~~~~ 1107 (1134)
+. ....+.+++++|.+++++++. ..+++|.+|+.. ++..+.
T Consensus 263 ~~----~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 EF----RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CC----CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred cC----CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 10 125677899999778888887 678999999987 764443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-11 Score=133.57 Aligned_cols=281 Identities=9% Similarity=-0.036 Sum_probs=194.4
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... .+..+...+.+++++++|.+.+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 346899999999998 66655557899999987 443210 0122446799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1134)
+...++.|..||.. ++ ... ..+......+.++++.++|. ++++...++.|.+||. +++... ....+...+.++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 87778899999986 32 221 12223455789999999998 6777777889999998 665443 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeE-ecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++.++ |.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++....
T Consensus 147 ~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 147 TLGSD--NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEF 218 (299)
T ss_dssp EECTT--SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EEcCC--CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEE
Confidence 88654 467777767889999998 4443322 333445788999999998766543 2567999998 6664432
Q ss_pred -ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 583 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..... ..+.+++++++|+.+++...++.|..||. +++ +..+....+...+.++++ ++|.+.++.. .+.+..++.
T Consensus 219 ~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 219 KIPTPN-ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEE
T ss_pred ECCCCC-CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEc
Confidence 22222 36889999999987666657889999998 454 334433333346889999 8888766654 567777777
Q ss_pred CCc
Q 001160 662 SDG 664 (1134)
Q Consensus 662 ~~~ 664 (1134)
.++
T Consensus 294 ~~~ 296 (299)
T 2z2n_A 294 IKD 296 (299)
T ss_dssp C--
T ss_pred Ccc
Confidence 654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-13 Score=143.40 Aligned_cols=241 Identities=7% Similarity=-0.008 Sum_probs=172.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|++++
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~l~v 84 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGHLIA 84 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCCEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCcEEE
Confidence 45678899999999878888999999999999876 221 233567799999999999888
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEE----Ec-------------CCCcEEEEECCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVT----CG-------------DDKMIKVWDVVA 486 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s----g~-------------~d~~i~iwd~~~ 486 (1134)
+...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..++..
T Consensus 85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 85 CSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 887788999999987764321111111 123567899999998 6776 33 13456666654
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEcc-CCCc---eeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD-YLGS---RVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
++ +..+..+......++|+|++ ..+++.+.++.|.+||+. .+.. ...+......+.+++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 34455566778899997755 677777888999999997 3332 22333344566789999999877665
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE-eCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-DTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
++.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3459999986 777777776654 788889 5888988888875 455666665543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=142.15 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=170.1
Q ss_pred cccCCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 404 LNDAAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556788999999998 7788888999999999876 33 4556777899999999998 77777778899999
Q ss_pred ECCCCeeeEEecCC----CCCeEEEEeeccCCccEEEEEec-----------------CCeEEEEEccCCCceeEecCCC
Q 001160 483 DVVAGRKQYTFEGH----EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKAWLYDYLGSRVDYDAPG 541 (1134)
Q Consensus 483 d~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~l~s~~~-----------------d~~i~~wd~~~~~~~~~~~~~~ 541 (1134)
|..+++........ ...+..+++++ +|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433221 23456788866 4477776321 2345555443 4444455556
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC-CCee---EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES-EGAI---KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
.....++|+|+++.+++.. .++.|.+|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6788999999999994443 36789999987 5554 3444 2223356779999999876666 789999998
Q ss_pred CCCeeEEEEeCCCCCCCcceEEE-ccCCCEEEEEeCCCcEEEEECCCc
Q 001160 618 DNMNMLTTVDADGGLPASPRLRF-NKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 618 ~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 6 777777775533 788999 58999999888764 444455443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=144.41 Aligned_cols=277 Identities=12% Similarity=-0.003 Sum_probs=189.0
Q ss_pred CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcccee
Q 001160 367 NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 367 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~ 446 (1134)
.+++|.+||..+++...... .. .. -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~----~~-------~n--~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-- 78 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF----YR-------AN--GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-- 78 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH----HH-------HH--SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred CCceEEEEECCCCEEhhhhH----hh-------hc--CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence 37899999999987654210 00 00 01122446677774 45555666678999999999987665
Q ss_pred eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC-----CCeEEEEeeccCCccEEEEEe-cC
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE-----APVYSVCPHHKESIQFIFSTA-ID 520 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~-~d 520 (1134)
.+. .......++++++++ +.++...++.|.+||+.+++....+.... .....+++ . ++..+++.. .+
T Consensus 79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 333 345688999999985 56666579999999999999887765433 14456666 2 224444443 48
Q ss_pred CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC------CCcEEEEeCCCCeeEEEecCccCcceEEE
Q 001160 521 GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG------ESHLVEWNESEGAIKRTYSGFRKRSLGVV 594 (1134)
Q Consensus 521 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 594 (1134)
+.|.+||+.+.+....+... .....++++|+|++++++..+.+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776665543 345688999999877765421100 26799999999998877764333357889
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEE----eCCCcEEEEECCCchhhhh
Q 001160 595 QFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVT----TSDNGIKILANSDGVRLLR 669 (1134)
Q Consensus 595 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~----~~dg~i~iw~~~~~~~~~~ 669 (1134)
+|+|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||.. + +.+.
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~ 306 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLID 306 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEE
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEE
Confidence 99999999988755 89999998887532111111123568899999 55555665 568899999987 6 4444
Q ss_pred hh
Q 001160 670 ML 671 (1134)
Q Consensus 670 ~~ 671 (1134)
.+
T Consensus 307 ~i 308 (328)
T 3dsm_A 307 EF 308 (328)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=139.74 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=167.3
Q ss_pred ceEEEEeccCCCEEE-EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 842 SAACIALSKNDSYVM-SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+.... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~-~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT-V 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe-e
Confidence 678999999999777 434 78999999876543322223345688999999 788666555 889999998765433 3
Q ss_pred ec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeE
Q 001160 920 LK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQI 997 (1134)
Q Consensus 920 l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v 997 (1134)
+. .....+.+++++++|+++++...++.|.+|+..+.... ...... ...+..++++++|+++++. .++.|
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-----VLPFTG---LNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-----ECCCCS---CCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-----eecccc---CCCceeEEEeCCCCEEEEECCCCEE
Confidence 32 23356899999999998888888889999976554321 111111 1346889999999977664 46899
Q ss_pred EEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEee
Q 001160 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAP 1077 (1134)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1077 (1134)
.+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... ... .+...+.++++
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~---------~~~~~p~~i~~ 241 (270)
T 1rwi_B 174 VKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF---------TGLNTPLAVAV 241 (270)
T ss_dssp EEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC---------CSCSCEEEEEE
T ss_pred EEEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc---------CCCCCceeEEE
Confidence 999996554433222 123678999999999877777778899999987654332 110 11245778999
Q ss_pred cCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1078 HPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1078 ~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
++ +|+++++...+++|+++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 98 67899999999999999987655
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-09 Score=130.21 Aligned_cols=536 Identities=11% Similarity=0.072 Sum_probs=314.4
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC--CCCEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP--DGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp--dg~~la 424 (1134)
..|.++...++|..|. .|+.++.+..||..+++.... .... ... ..-....|.++.... +|.. .
T Consensus 66 n~I~~i~~d~~g~~lW-igt~~~Gl~~~d~~~~~f~~~------~~~~----~~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIW-IATQRAGLNAYNYETQSFSVY------QYNP----EDP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSEEE-EEESSSCEEEEETTTTEEEEE------CCCT----TCS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCEEE-EEeCCCCcceECCCCCeEEee------cccc----CCC--CCcccCcceEEEecCccCCCE-E
Confidence 4699999999886233 466665799999887653211 0000 000 001224688888887 6654 4
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEec------ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC---
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDA------HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG--- 495 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--- 495 (1134)
.++.++.+..||..+++.. .+.. ....|.++...++|. |..|+.++-|..+|..+++.......
T Consensus 132 i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence 4554445888998765321 1211 124588888887776 44466565689999887764322110
Q ss_pred ----CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 496 ----HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 496 ----h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
....|.++.... +|. |..++.+ -+.+||..+....... ......|.++...++|...+...
T Consensus 205 ~~~l~~~~i~~i~~d~--~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---- 276 (781)
T 3v9f_A 205 PNSLPGNDVRCIYKDT--NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE---- 276 (781)
T ss_dssp ----CCSSEEEEEECT--TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES----
T ss_pred cccCCCCceeEEEEcC--CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC----
Confidence 134688877644 334 4445555 6888987654432211 12345799999988887665432
Q ss_pred CCCcEEEEeCCCCeeEEEec-------------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe----
Q 001160 565 GESHLVEWNESEGAIKRTYS-------------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD---- 627 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 627 (1134)
.+-|.++|..++....... .-....|.++...++|.. -.|+.++-|..++..+........
T Consensus 277 -~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 277 -LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp -SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred -CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccc
Confidence 2338889987765332111 112236889988888864 456666678889887654332211
Q ss_pred ---CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccccc
Q 001160 628 ---ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1134)
Q Consensus 628 ---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
..-....|.++...++|.+ ..|+.++.|..|+..++. .. .+...
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~-~~-~~~~~------------------------------ 401 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV-AI-YNKEN------------------------------ 401 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE-EE-CC---------------------------------
T ss_pred cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe-EE-EccCC------------------------------
Confidence 1112245888888888764 456766778888876541 00 00000
Q ss_pred ccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCC
Q 001160 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1134)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 784 (1134)
.......|.++...++|
T Consensus 402 ---------------------------------------------------------------~~~~~~~v~~i~~d~~g 418 (781)
T 3v9f_A 402 ---------------------------------------------------------------RELLSNSVLCSLKDSEG 418 (781)
T ss_dssp -----------------------------------------------------------------CCCSBEEEEEECTTS
T ss_pred ---------------------------------------------------------------CCCCCcceEEEEECCCC
Confidence 00023457788887788
Q ss_pred cceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEE
Q 001160 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVS 864 (1134)
Q Consensus 785 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~ 864 (1134)
.. ..++.++-+..++..+ ++........ .. ...|.+++..++|.+.+... +.|.
T Consensus 419 ~l-Wigt~~~Gl~~~~~~~----------------------~~~~~~~~~~-~~-~~~v~~i~~d~~g~lwigt~-~Gl~ 472 (781)
T 3v9f_A 419 NL-WFGTYLGNISYYNTRL----------------------KKFQIIELEK-NE-LLDVRVFYEDKNKKIWIGTH-AGVF 472 (781)
T ss_dssp CE-EEEETTEEEEEECSSS----------------------CEEEECCSTT-TC-CCCEEEEEECTTSEEEEEET-TEEE
T ss_pred CE-EEEeccCCEEEEcCCC----------------------CcEEEeccCC-CC-CCeEEEEEECCCCCEEEEEC-CceE
Confidence 74 4455545566665422 1111100000 02 56789999998887666544 6799
Q ss_pred EEECCCCeEEEEecCC-----CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC----cccceEEEEEecC
Q 001160 865 LFNMMTFKVMTMFMSP-----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG----HQNRITGLAFSPT 935 (1134)
Q Consensus 865 vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~----h~~~i~~l~~s~d 935 (1134)
.||..+++........ ...|.++...+ ++.+.+ |+.++-+..||..+++.. .+.. ....|.++...++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSK 549 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTT
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCC
Confidence 9998876543332222 45799999988 777665 555445788988766543 3321 2356899999899
Q ss_pred CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCC
Q 001160 936 LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDA 1015 (1134)
Q Consensus 936 ~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~ 1015 (1134)
|.+.++.. +|.|..||..+++.. ......+-. ...+.++...++|++.+++. +.|..++.+......+...++
T Consensus 550 g~lWi~T~-~Glv~~~d~~~~~~~---~~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~~~~~dG 622 (781)
T 3v9f_A 550 GQMWLATG-EGLVCFPSARNFDYQ---VFQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYTYDHSNN 622 (781)
T ss_dssp SCEEEEET-TEEEEESCTTTCCCE---EECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEEECGGGT
T ss_pred CCEEEEEC-CCceEEECCCCCcEE---EccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEEecccCC
Confidence 98777655 664488888776521 122222221 13578899999998777754 458888886666655544333
Q ss_pred CCC---CeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 1016 LPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1016 h~~---~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
... ...++...+||++++ |+.+| +..++..
T Consensus 623 l~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 623 IPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD 655 (781)
T ss_dssp CCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred ccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence 222 234677788888555 66677 5666654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-11 Score=131.15 Aligned_cols=280 Identities=9% Similarity=0.062 Sum_probs=191.2
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
+...+.++++.++|+.+++...++.|.+|+.. +......... + ...+.++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 66 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--P-DAKVMCLTISS 66 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--T-TCCEEEEEECT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--c-cCceeeEEECC
Confidence 44678999999999977766667888888643 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecCcccce
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKGHQNRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~h~~~i 927 (1134)
+|.++++.. ++.|..||.. ++. ...+......+..+++++ +++++++...++.|.+||. +++.... +..+...+
T Consensus 67 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 67 DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999888876 7889999986 333 222333456789999999 8888887777889999998 5554332 33345678
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcc
Q 001160 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
.++++.++|+++++...++.|..||. +++... ...... ...+..++++++|+++++. .++.|.+||.++.
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~- 214 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITTSGE- 214 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECCCCc-
Confidence 99999999998888877889999998 555321 111111 1357899999999977664 4688999999444
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...+.. ..+...+.+++++++|++.++...++.|..||. +++. ..+... .....+.++++ + ++++++
T Consensus 215 ~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~--------~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 215 ITEFKI-PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ--------IKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp EEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS--------SSSCCEEEEEE-C-SSCEEE
T ss_pred EEEEEC-CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC--------CCCCccceEEe-c-CCCEEE
Confidence 333321 123567999999999997776657889999998 4542 222111 11245667777 5 777777
Q ss_pred EEeCCCcEEEEecCCC
Q 001160 1087 LGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~~~~ 1102 (1134)
+.+ .+.+..++..+.
T Consensus 282 ~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKD 296 (299)
T ss_dssp EET-TTEEEEEEEC--
T ss_pred Eec-CCcEEEEEcCcc
Confidence 655 567777777654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-13 Score=163.07 Aligned_cols=247 Identities=8% Similarity=-0.095 Sum_probs=163.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCC----CcEEEEEccCcccc-ccccceeeccccccccccccccccCCcCeEEEEEcCC
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERL-AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD 419 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~d----g~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd 419 (1134)
|...+.+++|||||++++++.+.+ ..|++||+.+++.+ .. . +... ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEecC
Confidence 334699999999999655554433 57999999998764 11 0 1111 1267999999
Q ss_pred CCEEEEEeCCCe-------------EEEEEcCCCCccc-eeeEEecccCCeeEEEEecCCCcEEEEEEcCCC----cEEE
Q 001160 420 GLMLGVAFSKHI-------------VHLYTYNPTGELR-QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK----MIKV 481 (1134)
Q Consensus 420 g~~las~~~dg~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~----~i~i 481 (1134)
|+.|+.++.+.. |++|++.++..-. .......|...+..+.|+|||+ +|+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK--YLFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC--CEEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC--EEEEEEeCCCCceEEEE
Confidence 999999988776 9999999876321 1222234556789999999999 455544444 6777
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEccCCCc---eeEecCC-CCcEEEEEECCCCC
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAP-GNWCTMMAYSADGT 554 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~~~ 554 (1134)
||..+++ ...+..+...+....+ ++ |.+++... .++.|.+||+.+++. ...+..+ ...+..++|+ ++.
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~--g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WK--DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ET--TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cC--CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE
Confidence 7765554 4455556666666655 33 35444443 258899999987653 3333333 4567888887 555
Q ss_pred EEEEEeeCCCCCCcEEEEeCC-CCeeEEEecCccCcceEEEEEeCCCCEEEEEe----CCCeEEEEECCCCee
Q 001160 555 RLFSCGTSKEGESHLVEWNES-EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----DEFQIKFWDMDNMNM 622 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1134)
.+++... ++..++|... +++....+..+....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 332 lv~~~~~----dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLK----DATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEE----TTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEE----CCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 6666553 4444554433 35566666655444677888999998776432 457899999998774
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=136.73 Aligned_cols=243 Identities=11% Similarity=0.043 Sum_probs=178.8
Q ss_pred EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001160 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 361 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++++ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 788999999999999999987654 22233 4688999999999988 45778999999 6
Q ss_pred CCccceeeEEecc-cCCeeEEEEecCCCcEEEEEEcC-CCcEEEEECCCCeeeEEecC------CCCCeEEEEeeccCCc
Q 001160 440 TGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVTCGD-DKMIKVWDVVAGRKQYTFEG------HEAPVYSVCPHHKESI 511 (1134)
Q Consensus 440 ~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~ 511 (1134)
++.+. .+..+ ...+.++.+.++|+ ++++.+. ++.|..+|. +|+.+..+.. +......+++ ..+|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 77655 44443 34688999999999 7777766 788888884 7887776642 2123334444 4466
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC---
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK--- 588 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--- 588 (1134)
.++++...++.|..||.+ ++.+..+... ..+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 8887777664 34556788899999988753 56799999999999998864321
Q ss_pred --cceEEEEEeCCCCEEEEEeCC--------CeEEEEEC-CCCeeEEEEeCCCCCCCcceEE
Q 001160 589 --RSLGVVQFDTTRNRFLAAGDE--------FQIKFWDM-DNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 589 --~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
..+..+...++|+.+++.... +..+++.+ .+++.+-.+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 136788889999888887421 23355555 4677777777665555666654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=7.3e-12 Score=136.75 Aligned_cols=303 Identities=14% Similarity=0.133 Sum_probs=191.5
Q ss_pred EEECCCCCEEEEEeeC-CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe----------CCCeEEEE
Q 001160 547 MAYSADGTRLFSCGTS-KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG----------DEFQIKFW 615 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 615 (1134)
....|+++.+++.... ...++.|.++|..+++.+.++..... + . +.++|||++++++. .++.|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456999998887542 11256899999999999999886655 4 4 99999999888765 36789999
Q ss_pred ECCCCeeEEEEeCCCC-----CCCcceEEEccCCCEEEEEeC--CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCC
Q 001160 616 DMDNMNMLTTVDADGG-----LPASPRLRFNKEGSLLAVTTS--DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688 (1134)
Q Consensus 616 d~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1134)
|..+.+.+..+....+ ......++|+|||++++++.. ++.|.++|+.++ +.+..+..
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v--------------- 178 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDV--------------- 178 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEEC---------------
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEEC---------------
Confidence 9999999998864321 124578999999999988864 689999999887 33322211
Q ss_pred CCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCC
Q 001160 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768 (1134)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~ 768 (1134)
++
T Consensus 179 ------------------------------------------------------------------------------~g 180 (386)
T 3sjl_D 179 ------------------------------------------------------------------------------PD 180 (386)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceE-EEE
Q 001160 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA-CIA 847 (1134)
Q Consensus 769 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~-~~~ 847 (1134)
....+....+.+++.+.||.+.+.++.... +...... ...++. ...+. ..+
T Consensus 181 -------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g-----~v~~~~~-~~~~~~---------------~~~~~~~~~ 232 (386)
T 3sjl_D 181 -------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG-----TPEITHT-EVFHPE---------------DEFLINHPA 232 (386)
T ss_dssp -------EEEEEEEETTEEEEEETTSCEEEEECCSSS-----CCEEEEC-CCCSCT---------------TSCBCSCCE
T ss_pred -------cceeecCCCceeEEECCCCCEEEEECCCCC-----eEEEeec-ceeccc---------------cccccccce
Confidence 001111122233344444444444432200 0000000 011111 11111 135
Q ss_pred e-ccCCCEEEEEeCCeEEEEECCCCe--EEEEec---------C-CCCceEEEEEcCCCCcEEEEEeC----------CC
Q 001160 848 L-SKNDSYVMSASGGKVSLFNMMTFK--VMTMFM---------S-PPPAATFLAFHPQDNNIIAIGME----------DS 904 (1134)
Q Consensus 848 ~-s~dg~~la~~sdg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~~lasg~~----------dg 904 (1134)
| .++|+++.+..+|+|.+.|+.+.. ....+. + .......+++++ +++.+.+... .+
T Consensus 233 ~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 233 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEE
T ss_pred eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCC
Confidence 5 478876665558999999997654 222221 0 112345688899 6666666542 25
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCCC-EEEE-EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE
Q 001160 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN-ALVS-SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~-~l~s-~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
+|.+.|+.+++.+..+..- ..+.+|++++|++ +|++ ...++.|.++|..+++.+..... .+ ....+.+
T Consensus 312 ~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~---~~------~p~~l~~ 381 (386)
T 3sjl_D 312 FVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ---LG------HGPQVIT 381 (386)
T ss_dssp EEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC---CC------SSCCEEE
T ss_pred EEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC---CC------CCceeEE
Confidence 7999999999999887632 3678999999997 6655 45689999999999885443211 12 2356777
Q ss_pred CCC
Q 001160 983 HND 985 (1134)
Q Consensus 983 spd 985 (1134)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-11 Score=133.97 Aligned_cols=275 Identities=9% Similarity=-0.020 Sum_probs=181.5
Q ss_pred EEecCCCeEEEEEe-CCC---cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe-
Q 001160 353 DFHPQQQTILLVGT-NVG---DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF- 427 (1134)
Q Consensus 353 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~- 427 (1134)
...|++++++++-. ..+ .|.+||..+++.+.+ +.....+ .+++||||++++++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34577765444432 223 889999998876542 1112223 899999999999986
Q ss_pred ---------CCCeEEEEEcCCCCccceeeEE-ec---ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEE
Q 001160 428 ---------SKHIVHLYTYNPTGELRQHLEI-DA---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 428 ---------~dg~i~iwd~~~~~~~~~~~~~-~~---h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~ 492 (1134)
.++.|.+||..+.+.+.....- .. +...-..++|+|||+ +|+.+. .++.|.++| .+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeE
Confidence 3678999999887655432110 00 012345899999999 555544 257899999 99998877
Q ss_pred -ecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec-----CCCCc-EEEEEECCCCCEEEEEeeCCCC
Q 001160 493 -FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD-----APGNW-CTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 493 -~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
+.. .+ ++.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~~-~~---~~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLSS-PT---CYHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcCC-Cc---eEEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 642 22 233444443 46677888999999999 665542221 11112 233456676665554432
Q ss_pred CCcEEEEeCCCCe--eEEEecCcc---------CcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeeEE
Q 001160 566 ESHLVEWNESEGA--IKRTYSGFR---------KRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 566 ~~~i~~wd~~~~~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 624 (1134)
.+.+.+.|..++. .+..+.... ......+.++|+++.++++.. .+.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 4579999987542 223332110 112344789999998888653 3579999999999999
Q ss_pred EEeCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCc
Q 001160 625 TVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDG 664 (1134)
Q Consensus 625 ~~~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~ 664 (1134)
.+.... ....++|+|||+ +++++. .++.|.+||..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 987543 468999999999 777776 4899999999988
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=141.35 Aligned_cols=283 Identities=12% Similarity=0.116 Sum_probs=189.9
Q ss_pred EEEEecCCCeEEEEEeC----CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 351 SMDFHPQQQTILLVGTN----VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
.....|++++++++-.. ++.|.+.|..+++.+.+ +.....+ .+++||||+++.++
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~-------------------I~vG~~P--~va~spDG~~lyVa 95 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGFLP--NPVVADDGSFIAHA 95 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE-------------------EECCCCC--cEEECCCCCEEEEE
Confidence 45667899877666554 68999999999887653 1112223 39999999988877
Q ss_pred e----------CCCeEEEEEcCCCCccceeeEEec-----ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCee
Q 001160 427 F----------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRK 489 (1134)
Q Consensus 427 ~----------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~ 489 (1134)
. .++.|.+||..+.+.+..+. +.. ....-..++|+|||+. ++.+. .++.|.++|+.+++.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence 5 36789999999987665332 111 0124567999999995 44443 478999999999999
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC-CCceeEe----cCCCCcE-EEEEE-CCCCCEEEEEeeC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY-LGSRVDY----DAPGNWC-TMMAY-SADGTRLFSCGTS 562 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~----~~~~~~v-~~~~~-s~~~~~l~~~~~~ 562 (1134)
+.++.... .. .+.|.+. ..+++.+.||.+.+.++.. ++..... ......+ ....| .++|++++...
T Consensus 173 v~tI~v~g--~~--~~~P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~-- 245 (386)
T 3sjl_D 173 KRMLDVPD--CY--HIFPTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 245 (386)
T ss_dssp EEEEECCS--EE--EEEEEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred EEEEECCC--cc--eeecCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence 98885321 11 1223332 5677888999999999876 3332211 1111122 12355 46776655432
Q ss_pred CCCCCcEEEEeCCCCe--eEEEec---------CccCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCe
Q 001160 563 KEGESHLVEWNESEGA--IKRTYS---------GFRKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMN 621 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~ 621 (1134)
++.+++.|..++. .+..+. +........++++++++.++.... .+.|.+.|+.+++
T Consensus 246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 5779999987654 333332 111112344778999999888642 2579999999999
Q ss_pred eEEEEeCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhhh
Q 001160 622 MLTTVDADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 622 ~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 671 (1134)
.+..+.... .+..+++++|++ +|++.. .++.|.++|..++ +.++.+
T Consensus 323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i 370 (386)
T 3sjl_D 323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSV 370 (386)
T ss_dssp EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEe
Confidence 999987542 578999999997 666654 4899999999988 454444
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=159.67 Aligned_cols=246 Identities=10% Similarity=0.046 Sum_probs=163.9
Q ss_pred cCCcCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC---
Q 001160 406 DAAISVNRCVWGPDGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--- 477 (1134)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999987654 4699999999876432 112223468899999 8 566555544
Q ss_pred -----------cEEEEECCCCee----eEEecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCC--Ccee
Q 001160 478 -----------MIKVWDVVAGRK----QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYL--GSRV 535 (1134)
Q Consensus 478 -----------~i~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~ 535 (1134)
.|++|++.++.. +.....+...+..+.|+|+ |++|+..+.++ .|++||+.++ +...
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD--GRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC--CCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 399999987752 2222334446888888765 47887777544 8999999876 3134
Q ss_pred EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC--eeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEE
Q 001160 536 DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG--AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613 (1134)
Q Consensus 536 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 613 (1134)
.+..+...+.... +|+|+.|+..+........|.+||+.++ .....+..+ ...+..++++ ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 4444444444443 4899999887754334677999999875 333344443 3367777787 556677788888877
Q ss_pred EEECC-CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEe----CCCcEEEEECCCc
Q 001160 614 FWDMD-NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT----SDNGIKILANSDG 664 (1134)
Q Consensus 614 iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~i~iw~~~~~ 664 (1134)
+|.+. ++.....+..+. ...+..++++|+++.++... ..++|++||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455555555432 23578889999988665332 2478999999877
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-12 Score=135.25 Aligned_cols=240 Identities=8% Similarity=-0.061 Sum_probs=167.4
Q ss_pred CeeEEEEecCCCeEEE-EEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 348 NVMSMDFHPQQQTILL-VGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
...+++++|+|+ +++ +.+.++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 788999999997 666 546788999999765442210 11233567899999999966666
Q ss_pred eCCCeEEEEEcCCCCccceeeEEe-cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
. ++.|.+||..+.... .+. .....+..++++++|. ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765322 121 2335689999999998 7777777889999986655443322233346778888
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
+++ |.++++...++.|.+||................+.+++++++|..+++.. .++.|.+|+............
T Consensus 158 ~~~--g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eCC--CCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 764 46777777789999999876554433233336788999999996666653 366799999876544332222
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
+.. .+.+++++++|+.+++...++.|+++++...+
T Consensus 232 ~~~-~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 232 GLN-TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp SCS-CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCC-CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 222 67889999999988888899999999987654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-10 Score=125.97 Aligned_cols=278 Identities=10% Similarity=-0.019 Sum_probs=192.1
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....+.++++.++|+ ++++...++.|.+||.. ++... + .+..+...+.++++.++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 346899999999998 66666668899999987 44321 0 0122346789999999999888
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE-EecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i 503 (1134)
+...++.|..||.. ++.. ...+......+.++++.++|. ++++...++.|..+|.. ++... .+......+.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~--~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFT--EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEE--EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeE--EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77778899999987 4432 112222346789999999998 67777778899999987 65542 233345678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++.++ |.+.++...++.|..||. +++... ........+..++++++|+..++.. ..+.|.+||. +++....
T Consensus 152 ~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 152 TLGSD--NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp EECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEE
T ss_pred EECCC--CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEE
Confidence 88664 466666666889999988 333322 2223445789999999997766653 2557999998 5554432
Q ss_pred -ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 583 -YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 583 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.... ..+.+++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|.+.++.. . .|..++.
T Consensus 224 ~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 224 DIPTPN-ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSSTT-CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCC-CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22222 26788999999987766666789999998 44433 333332334678999999998666544 4 6766664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-11 Score=135.27 Aligned_cols=238 Identities=12% Similarity=0.030 Sum_probs=162.6
Q ss_pred EEEeccCCCEEEEEe-----------CCeEEEEECCCCeEEEEecCC-------CCceEEEEEcCCCCcEEEEEeC--CC
Q 001160 845 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 904 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~lasg~~--dg 904 (1134)
.+++||||++++++. ++.|.+||..+++.+..+... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999998888776532 12345899999 8998888764 57
Q ss_pred cEEEEEcCCceEEEE-ecCcccceEEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceee-ecCCCCCCCCcCceEEE
Q 001160 905 SVQIYNVRVDEVKTK-LKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFI-QAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~-l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~ 981 (1134)
.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.|+.+.++|. +++....... ....+.. .-.....
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence 899999 99998877 6532 2 24455665 45667778999999999 7764421110 0001100 0112356
Q ss_pred ECCCCcEEE-EEECCeEEEEeCCCcc---eeccCCCC-------CCCCCeEEEEEccCCCEEEEEec----------CCc
Q 001160 982 FHNDQTHLL-VVHESQISVYDSKLEC---SRSWSPKD-------ALPAPISSAIYSCDGLLVYAGFC----------DGA 1040 (1134)
Q Consensus 982 fspdg~~l~-~~~d~~v~vwd~~~~~---~~~~~~~~-------~h~~~v~~v~~s~dg~~l~~~~~----------dg~ 1040 (1134)
|.+++..++ ++..+.+.+.|+.... +..+.... -.......+++++|++.|+++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 677665544 4667889999984322 12221100 01233455889999998887653 357
Q ss_pred EEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001160 1041 IGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1041 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
|.++|..+++.+.++... ..+.+++|+| ||+ +++++. .+++|.+||+.+.+.
T Consensus 300 V~VID~~t~~vv~~i~~g-----------~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 300 VTSVTGLVGQTSSQISLG-----------HDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEEECCCCEEEEEEECC-----------CCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999999999999888532 3466899999 677 777776 589999999998774
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-10 Score=122.22 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=188.3
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
....+.++++.++|+..++...++.|.+|+.. +......+.. + ...+.++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~-~~~~~~i~~~~ 71 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--P-DAKVMCLIVSS 71 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--T-TCCEEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--C-CCcceeEEECC
Confidence 34577899999999977776677888888643 1111111111 2 45688999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEE-EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-EecCcccce
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMT-MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-~l~~h~~~i 927 (1134)
+|.+.++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~ 148 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYP 148 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCE
T ss_pred CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCc
Confidence 999887766 7889999988 55432 2333446789999999 88888777668899999987 65442 233345678
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCCcc
Q 001160 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKLEC 1006 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~~~ 1006 (1134)
.++++.++++++++...++.|..++. +++... .... .. ...+..+++.++|+++++. ..+.|.+|+.++..
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITTTGEI 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcCCCcE
Confidence 99999999998887777888999998 444321 1111 11 1357899999999877775 45689999985443
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
...... .+...+.+++++++|++.++...++.|..|+. +++.. .+.. + .....+.+++.++ +|++++
T Consensus 221 ~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~----~----~~~~~~~~i~~~~-~g~l~v 287 (300)
T 2qc5_A 221 SEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQL----Q----TENAEPHGITFGK-DGSVWF 287 (300)
T ss_dssp EEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEEC----C----STTCCCCCEEECT-TSCEEE
T ss_pred EEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEEC----C----ccCCccceeEeCC-CCCEEE
Confidence 332222 22567899999999997776666789999998 45433 2211 1 1123456778888 677666
Q ss_pred EEeCCCcEEEEec
Q 001160 1087 LGMSDGAVHVVEP 1099 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~ 1099 (1134)
+.. . .|..++.
T Consensus 288 ~~~-~-~i~~~~p 298 (300)
T 2qc5_A 288 ALK-C-KIGKLNL 298 (300)
T ss_dssp ECS-S-EEEEEEE
T ss_pred Ecc-C-ceEEeCC
Confidence 554 4 6666665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-11 Score=152.34 Aligned_cols=244 Identities=9% Similarity=-0.035 Sum_probs=159.1
Q ss_pred CCeeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+..++|||||++++++.+.+| .|++||+.+++.+.. ..+...+..++|||| +.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-SE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-CE
Confidence 36889999999996555544434 599999999876431 012222467899999 99
Q ss_pred EEEEeCCCe--------------EEEEEcCCCCccceeeEEe--cccCCeeEEEEecCCCcEEEEEEcC-----CCcEEE
Q 001160 423 LGVAFSKHI--------------VHLYTYNPTGELRQHLEID--AHVGGVNDIAFAHPNKQLCIVTCGD-----DKMIKV 481 (1134)
Q Consensus 423 las~~~dg~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~sg~~-----d~~i~i 481 (1134)
|+.++.++. |++|++.++..... ..+. .+...+..+.|+|||+ +|+..+. ...|++
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~~SpDG~--~l~~~~~~~~~~~~~l~~ 298 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-PVFATPELPKRGHGASVSSDGR--WVVITSSEGTDPVNTVHV 298 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSC--EEEEEEECTTCSCCEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCE-EEeccCCCCeEEEEEEECCCCC--EEEEEEEccCCCcceEEE
Confidence 998876553 89999987653211 1222 2334588999999999 4554443 348999
Q ss_pred EECCCC--eeeEEecCCCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCC--CceeEecCCCCcEEEEEECCCC
Q 001160 482 WDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYL--GSRVDYDAPGNWCTMMAYSADG 553 (1134)
Q Consensus 482 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~ 553 (1134)
||+.++ ++...+..+...+.... .++ |..|+..+. ++.|.+||+.+. .....+..+...+..++++ ++
T Consensus 299 ~d~~~~~~~~~~~l~~~~~~~~~~~-~~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 299 ARVTNGKIGPVTALIPDLKAQWDFV-DGV--GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEETTEECCCEEEECSSSSCEEEE-EEE--TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EECCCCCCcccEEecCCCCceEEEE-ecc--CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 999887 31455655655555543 344 366766665 345999998874 2333444444566677777 44
Q ss_pred CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-e---CCCeEEEEECCCCe
Q 001160 554 TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-G---DEFQIKFWDMDNMN 621 (1134)
Q Consensus 554 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---~dg~i~iwd~~~~~ 621 (1134)
..+++... ++...|.++++ +++....+.......+..+.++|+++.++.. + ..+.|++||+.+++
T Consensus 375 ~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 45555543 22334555565 4566666665434478889999998766532 2 45789999999887
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-11 Score=134.03 Aligned_cols=278 Identities=10% Similarity=0.094 Sum_probs=188.2
Q ss_pred cCCCeEEEEEeCC----CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe----
Q 001160 356 PQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF---- 427 (1134)
Q Consensus 356 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~---- 427 (1134)
|++++++++...+ +.|.+.|..+++.+.+. .--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-------------------~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-------------------DGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-------------------EECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-------------------ECCCCC--ceEECCCCCEEEEEecccc
Confidence 5666666665544 79999999998877541 112234 799999999988876
Q ss_pred ------CCCeEEEEEcCCCCccceeeEEe--c---ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECCCCeeeEEec
Q 001160 428 ------SKHIVHLYTYNPTGELRQHLEID--A---HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~ 494 (1134)
.++.|.++|..+.+.+..+. +. . ....-..++|+|||+ +++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSS--EEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCC--EEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665332 21 0 112356789999999 455544 36899999999999988876
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE----ecCCCCc-EEEEEECCCCCEEEEEeeCCCCCCcE
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD----YDAPGNW-CTMMAYSADGTRLFSCGTSKEGESHL 569 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~i 569 (1134)
--. . ....|.+. ..+++.+.||.+.+.+..+.+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g--~--~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPD--C--YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCS--E--EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCC--c--eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 322 1 22334333 5667778888888888844433321 1111111 123567899988877653 5679
Q ss_pred EEEeCCCCeeE--EEecCc---------cCcceEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCeeEEEEeC
Q 001160 570 VEWNESEGAIK--RTYSGF---------RKRSLGVVQFDTTRNRFLAAGD----------EFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 570 ~~wd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 628 (1134)
.+.|...+... ..+... .......++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111110 0001223689999988777542 35799999999999999875
Q ss_pred CCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhh
Q 001160 629 DGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRM 670 (1134)
Q Consensus 629 ~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 670 (1134)
.. ....++|+|||+ ++++.. .++.|.++|..++ +.++.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~t 408 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRS 408 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEE
Confidence 42 368999999999 888887 5899999999998 44444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-11 Score=131.35 Aligned_cols=240 Identities=14% Similarity=0.073 Sum_probs=162.6
Q ss_pred EEEeccCCCEEEEEe-----------CCeEEEEECCCCeEEEEecCC-------CCceEEEEEcCCCCcEEEEEeC--CC
Q 001160 845 CIALSKNDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSP-------PPAATFLAFHPQDNNIIAIGME--DS 904 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~~~~~lasg~~--dg 904 (1134)
.+++||||++++++. ++.|.++|..+++.+..+.-. ......++|+| |+++|.++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 799999999888774 467999999999998887522 12356789999 8888888764 57
Q ss_pred cEEEEEcCCceEEEEecCcccceEEEEEecCC-CEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEC
Q 001160 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTL-NALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 905 ~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~-~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.|.+.|+.+++.+..+..-.. ....|++ +.+++.+.||.+.+.+..+++..... .....-... .....+.|+
T Consensus 201 ~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~-~~~~~v~~~--p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN-TEVFHTEDE--LLINHPAFS 273 (426)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE-CCCCSCTTS--CBCSCCEEC
T ss_pred eEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe-eeeeccCCC--ceeeEeeec
Confidence 899999999999888764211 2333443 55566677888877777554432110 000100000 011245789
Q ss_pred CCCcEEEE-EECCeEEEEeCCCcceec---cCCC--C-----CCCCCeEEEEEccCCCEEEEEec----------CCcEE
Q 001160 984 NDQTHLLV-VHESQISVYDSKLECSRS---WSPK--D-----ALPAPISSAIYSCDGLLVYAGFC----------DGAIG 1042 (1134)
Q Consensus 984 pdg~~l~~-~~d~~v~vwd~~~~~~~~---~~~~--~-----~h~~~v~~v~~s~dg~~l~~~~~----------dg~I~ 1042 (1134)
++++.++. ...+.|.+.|..+..... +... . ........++|++|++++++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887766 456789999984333221 1100 0 00112224789999998777643 35799
Q ss_pred EEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecCCCcc
Q 001160 1043 VFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1043 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~~~~~ 1104 (1134)
++|..+++.+.++... ..+.+++|+| ||+ ++++.. .+++|.++|+.+.+.
T Consensus 354 VID~~T~kvv~~I~vg-----------~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 354 VLNAETGERINKIELG-----------HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp EEETTTCCEEEEEEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred EEECCCCeEEEEEECC-----------CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 9999999999988533 3467899999 677 788877 599999999998883
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-10 Score=125.00 Aligned_cols=244 Identities=12% Similarity=0.048 Sum_probs=165.1
Q ss_pred CCcCeEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCccceee-EEecccCCeeEEEEecC-CCcEEEEEEcCCC
Q 001160 407 AAISVNRCVWGPDGLMLGV-------AFSKHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHP-NKQLCIVTCGDDK 477 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las-------~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d-~~~~~l~sg~~d~ 477 (1134)
.-....+++|+++|.++++ +..++.|.+||..+++...... ...++...+.+++++++ |+ ++++.. .+
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~--l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ--LFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE--EEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc--EEEEEC-CC
Confidence 3345789999999988887 5778899999988765422100 00125567899999999 65 444444 44
Q ss_pred cEEEEECCCCeeeEE-ecC----CCCCeEEEEeeccCCccEEEEEecC---------------CeEEEEEccCCCceeEe
Q 001160 478 MIKVWDVVAGRKQYT-FEG----HEAPVYSVCPHHKESIQFIFSTAID---------------GKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~~~l~s~~~d---------------~~i~~wd~~~~~~~~~~ 537 (1134)
.|.+||.. ++.... ... ....+.+++++++ |.++++...+ +.|..||.. ++ ...+
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV 167 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe
Confidence 79999987 765432 221 1235788888764 4677666554 567777654 33 2222
Q ss_pred cCCCCcEEEEEEC----CCCCEEEEEeeCCCCCCcEEEEeCC-CCe-----eEEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 538 DAPGNWCTMMAYS----ADGTRLFSCGTSKEGESHLVEWNES-EGA-----IKRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 538 ~~~~~~v~~~~~s----~~~~~l~~~~~~~~~~~~i~~wd~~-~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
.........++++ |+++.++.+.. .++.|.+||.. +++ ....+..+.......++++++|+.+++..
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~---~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEEC---CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2233356789999 99987766542 35779999976 454 22233333202577899999999888887
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE-eCCCcEEEEECCC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT-TSDNGIKILANSD 663 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iw~~~~ 663 (1134)
.++.|.+||..+++.+..+..+. ..+.+++|+++|+.|+++ ..++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999998777777666543 367899999999955544 4568899998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-10 Score=124.74 Aligned_cols=247 Identities=10% Similarity=0.052 Sum_probs=163.5
Q ss_pred CCCeeEEEEecCCCeEEEE-------EeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcC
Q 001160 346 GSNVMSMDFHPQQQTILLV-------GTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGP 418 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~sp 418 (1134)
-....+++|+++|. ++++ +..++.|.+||..+++.... . . ....++...+.++++++
T Consensus 17 ~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEec
Confidence 34678999999997 6666 46688999999887764321 0 0 00123456789999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCCccce-eeEEec-ccCCeeEEEEecCCCcEEEEEEcCC---------------CcEE
Q 001160 419 D-GLMLGVAFSKHIVHLYTYNPTGELRQ-HLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDD---------------KMIK 480 (1134)
Q Consensus 419 d-g~~las~~~dg~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d---------------~~i~ 480 (1134)
+ |+++++. ..+.|.+||.+ ++.... .....+ ....+.+++++++|+ +.++...+ +.|.
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEE
Confidence 9 7655554 44479999988 543211 100001 123588999999998 56665544 5778
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEee--ccCCccEEEE-EecCCeEEEEEcc-CCCc-----eeEecCCC-CcEEEEEEC
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPH--HKESIQFIFS-TAIDGKIKAWLYD-YLGS-----RVDYDAPG-NWCTMMAYS 550 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~~~l~s-~~~d~~i~~wd~~-~~~~-----~~~~~~~~-~~v~~~~~s 550 (1134)
.||.. ++.... ..+......++++ .+.++..++. ...++.|.+||+. .+.. ...+..+. ..+..++++
T Consensus 157 ~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88865 554333 2344456788887 1134455544 4568999999986 2321 12223333 568899999
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCC
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDN 619 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 619 (1134)
++|+..++... ++.|.+||..+++.+..+..+.. .+.+++|+++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988877642 56799999987877777766544 78899999999966554 4668899999864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-10 Score=128.99 Aligned_cols=249 Identities=13% Similarity=0.045 Sum_probs=166.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEEEcCCceE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iwd~~~~~~ 916 (1134)
-.....++++++|+++++.. ++.|++||..++.......... ... ++|++ +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578899999999777666 6899999999887766555433 333 99999 888888887766 799999876654
Q ss_pred EEEe----cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeec--CCCCCCCCcCce-EEEECCCCcEE
Q 001160 917 KTKL----KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA--PAGRQSPLVGET-KVQFHNDQTHL 989 (1134)
Q Consensus 917 ~~~l----~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~v~-~~~fspdg~~l 989 (1134)
...+ ..+...+.+++++|++..|..+..++.|+.||..++... .+.. ..+... .... .++|+|++..|
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~--~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG--TNPGPYLIYYFVDSNF 281 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC--CSSCCEEEEETTTTEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC--CCccccEEEeCCCCEE
Confidence 3344 224566789999995445555777889999999876521 1111 111111 1123 99999965444
Q ss_pred EEE--ECCeEEEEeCCCcceeccCCCC---C---------CCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceeee
Q 001160 990 LVV--HESQISVYDSKLECSRSWSPKD---A---------LPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 990 ~~~--~d~~v~vwd~~~~~~~~~~~~~---~---------h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~~ 1054 (1134)
.++ .++.|+.|+.++... .+.... + .......++|+++|+++++-+ .+++|+.|++.+|....
T Consensus 282 yv~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~- 359 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST- 359 (409)
T ss_dssp EEEETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-
T ss_pred EEEeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-
Confidence 443 468899999865522 221110 0 123578999999999777777 78999999988886432
Q ss_pred cCCcccccc---c--ccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1055 IGPSAYIPT---Y--AVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1055 ~~~~~~~~~---~--~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
+..+..... + ....-..|.++++++ +++++++...++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 221100000 0 001124688999999 5889998888889988765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.6e-10 Score=124.82 Aligned_cols=240 Identities=10% Similarity=-0.009 Sum_probs=163.4
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
...++++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999997 777777789999999987764321 111 22233 9999999999998
Q ss_pred eCCC--eEEEEEcCCCCccceeeEEec-ccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE----ecCCCCC
Q 001160 427 FSKH--IVHLYTYNPTGELRQHLEIDA-HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT----FEGHEAP 499 (1134)
Q Consensus 427 ~~dg--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~----~~~h~~~ 499 (1134)
..++ .|.+|+..++........+.. ....+.+++++|++. .|+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 799999876554332211112 446688999999655 344467788999999887764322 2222222
Q ss_pred e--EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC---------------CCcEEEEEECCCCCEEEEEeeC
Q 001160 500 V--YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP---------------GNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 500 v--~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
- ..++|+|.. +.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~~-g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFVD-SNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETTT-TEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCCC-CEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 389998853 367777778899999987643 2222222 13478999999999666543
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCcc--------------CcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFR--------------KRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
.++..|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 03678999998777643 333320 124778999999877777778888888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-10 Score=138.14 Aligned_cols=250 Identities=11% Similarity=0.043 Sum_probs=164.3
Q ss_pred CCeeEEEEecCCCeEEEEEeCC----CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNV----GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~ 422 (1134)
..+..++|||||++++.+.+.. ..|++||+.+++.+.. . + +......++|+ ||+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-GNEG 187 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-TTTE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-CCCE
Confidence 4688899999999665554433 4799999999875431 0 0 11123578999 9999
Q ss_pred EEEEeCCC-------------eEEEEEcCCCCccc-eeeEEec-ccCCeeEEEEecCCCcEEEEEEc--CCCcEEEEECC
Q 001160 423 LGVAFSKH-------------IVHLYTYNPTGELR-QHLEIDA-HVGGVNDIAFAHPNKQLCIVTCG--DDKMIKVWDVV 485 (1134)
Q Consensus 423 las~~~dg-------------~i~iwd~~~~~~~~-~~~~~~~-h~~~v~~l~~s~d~~~~~l~sg~--~d~~i~iwd~~ 485 (1134)
|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+.+++.+.. .++.|++||+.
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 99998774 49999998765321 1112223 44567889999999953222221 23589999998
Q ss_pred CCe-eeEEecCCCCCeEEEEeeccCCccEEEEEecC---CeEEEEEccCCCc--eeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 486 AGR-KQYTFEGHEAPVYSVCPHHKESIQFIFSTAID---GKIKAWLYDYLGS--RVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 486 ~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
++. ....+..+....... +++.++ .+++....+ +.|..+|+.+... ...+..+...+. .|+++++.|+..
T Consensus 268 ~~~~~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 268 QENAPLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp STTCCCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCCceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 764 445666666666554 444432 444555443 6799999987654 234444555554 899999998877
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC----CeEEEEECCCCeeE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE----FQIKFWDMDNMNML 623 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1134)
... ++...|++|++..+ ....+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 344 ~~~-~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 344 YMV-DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEE-TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEE-CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 642 23447999998754 4455543333357777888888776665433 88999999887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-10 Score=126.01 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=172.8
Q ss_pred CCeeEEEEecCCCeEEEEEe--CCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGT--NVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 5899999999998 666653 2344677776644322 111111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEcCCCCccceeeEEe----cccCCeeEEEEecCCCcEEEEEEc---CCCcEEEEECCCCeeeEE
Q 001160 425 VAFS-----KHIVHLYTYNPTGELRQHLEID----AHVGGVNDIAFAHPNKQLCIVTCG---DDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 425 s~~~-----dg~i~iwd~~~~~~~~~~~~~~----~h~~~v~~l~~s~d~~~~~l~sg~---~d~~i~iwd~~~~~~~~~ 492 (1134)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. .+++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988754422 221 12345689999987653 455555 688999999999988777
Q ss_pred ecCCCCCeE-EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEE
Q 001160 493 FEGHEAPVY-SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVE 571 (1134)
Q Consensus 493 ~~~h~~~v~-~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~ 571 (1134)
+.+|..... ...+.+ +|..+.+.+.++.++.|. ..+..++|+|+|+.|+.+... ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 766532211 122322 346677777788876663 236789999999998887541 234555
Q ss_pred EeCC---CCe-----eEE--EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001160 572 WNES---EGA-----IKR--TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 111 000 1111111 3456899999998888888999999999666644433322 22356889999
Q ss_pred cCCCEEEEEeCC
Q 001160 642 KEGSLLAVTTSD 653 (1134)
Q Consensus 642 ~d~~~l~~~~~d 653 (1134)
+++.++++.+..
T Consensus 300 ~~g~l~v~~~~~ 311 (343)
T 2qe8_A 300 SDGYLYFDCNQL 311 (343)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCcEEEEeCcc
Confidence 988877776544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.27 E-value=9e-10 Score=119.38 Aligned_cols=227 Identities=8% Similarity=0.080 Sum_probs=153.5
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
--.+..|+|++..++++...++.|..||..+++... ......+.+++++++|+++++.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------------------~~~~~~~~~i~~~~dG~l~v~~- 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR---------------------VTMDAPVSSVALRQSGGYVATI- 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE---------------------EECSSCEEEEEEBTTSSEEEEE-
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE---------------------EeCCCceEEEEECCCCCEEEEE-
Confidence 456899999777788888889999999998765421 1134579999999999965543
Q ss_pred CCCeEEEEEcCCCCccceeeEEec--ccCCeeEEEEecCCCcEEEEEE-cC--------CCcEEEEECC-CCeeeEEecC
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDA--HVGGVNDIAFAHPNKQLCIVTC-GD--------DKMIKVWDVV-AGRKQYTFEG 495 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~sg-~~--------d~~i~iwd~~-~~~~~~~~~~ 495 (1134)
++.|.+||.++++... ...... ....+++++++|+|+ ++++. .. ...-.||.+. .++.. .+..
T Consensus 72 -~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 72 -GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp -TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred -CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 5679999998765321 111111 123578999999998 44443 21 1223445443 24332 3333
Q ss_pred CCCCeEEEEeeccCCccEE-EEEecCCeEEEEEcc--CCCce-----eEecCCCCcEEEEEECCCCCEEEEEeeCCCCCC
Q 001160 496 HEAPVYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YLGSR-----VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 567 (1134)
+......++|+|++ +.+ ++.+.++.|.+||++ ++... ..+.........++++++|++.++.. +.+
T Consensus 147 ~~~~pngi~~spdg--~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~----~~~ 220 (297)
T 3g4e_A 147 QVDISNGLDWSLDH--KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY----NGG 220 (297)
T ss_dssp EESBEEEEEECTTS--CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE----TTT
T ss_pred ccccccceEEcCCC--CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc----CCC
Confidence 44556789998755 544 566678999999984 33221 12222335678999999998777664 256
Q ss_pred cEEEEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEeC
Q 001160 568 HLVEWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAGD 608 (1134)
Q Consensus 568 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 608 (1134)
.|..||..+++.+..+..... .+++++|. |+++.|+.++.
T Consensus 221 ~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 799999999999988887654 78999998 88887766553
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-05 Score=94.53 Aligned_cols=534 Identities=10% Similarity=-0.026 Sum_probs=289.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeE
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 501 (1134)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++.+-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 34443 55678999998654221 11121 2346789999997774 455666788999999765443333333334567
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
.+++.+.. +.+.++-...+.|.+.+++.................+++.|....|+.... ...+.|...++.......
T Consensus 84 GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWLG-KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeCC-CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 88886543 256666667789999998765544444344556789999997666665532 125678888876443333
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.... .. ....++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~~-~~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPN-VG-RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECS-CS-SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECC-CC-CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2322 22 577899999887777765 667899999976544 333222 22346777764 44444545578888888
Q ss_pred CCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccc-cccc
Q 001160 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVD-VKPR 739 (1134)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 739 (1134)
..++. ....+........ .+.. +.+..+....+.....+ ...+.+.... +.+.
T Consensus 235 k~tg~-~~~~l~~~~~~p~------------~i~v------------~~~~~q~~~n~C~~~ng-~C~~~C~~~~~~~~~ 288 (628)
T 4a0p_A 235 KTSGQ-NRTIIQGHLDYVM------------DILV------------FHSSRQSGWNECASSNG-HCSHLCLAVPVGGFV 288 (628)
T ss_dssp TTTCC-SCEEEECSCCSCC------------EEEE------------ECGGGSCCCCTTTTTGG-GCSSEEEEETTTEEE
T ss_pred CCCCC-ceEEEecCCCCcc------------eeee------------eeecccccceEeccCCC-CcchhhhcCCCCCee
Confidence 77762 2222221110000 0000 00000000000000000 0000000000 1111
Q ss_pred cccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcc
Q 001160 740 VAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819 (1134)
Q Consensus 740 ~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 819 (1134)
..+..|... .....+|.. + ...|+.+ ....|+-..+..
T Consensus 289 C~C~~g~~l----------------------~~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~---------------- 326 (628)
T 4a0p_A 289 CGCPAHYSL----------------------NADNRTCSA--P-TTFLLFS-QKSAINRMVIDE---------------- 326 (628)
T ss_dssp EECSTTCEE----------------------CTTSSCEEC--C-SSEEEEE-ETTEEEEECCCT----------------
T ss_pred EEcCCCcEe----------------------cccCCcCcc--c-cceeeee-ccceEEEEeccc----------------
Confidence 111000000 000111111 1 1223222 223343322211
Q ss_pred cccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecC------CCCceEEEEEcC
Q 001160 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS------PPPAATFLAFHP 891 (1134)
Q Consensus 820 ~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~ 891 (1134)
...........+ -..+.+++|.+.+..|..+. .+.|..++.........+.. ....+..+++..
T Consensus 327 ----~~~~~~~l~~~~----~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~ 398 (628)
T 4a0p_A 327 ----QQSPDIILPIHS----LRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398 (628)
T ss_dssp ----TCCCCEECCCTT----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEET
T ss_pred ----ccCceEEEEehh----cCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeec
Confidence 000000111122 45688899999888777776 58899998875433333322 234678999998
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCceEEEEe-cCcccceEEEEEec-CCCEEEEEcCCC--cEEEEeCCCcccccceeeecC
Q 001160 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKL-KGHQNRITGLAFSP-TLNALVSSGADA--QLCMWSIDKWEKLKSRFIQAP 967 (1134)
Q Consensus 892 ~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~~h~~~i~~l~~s~-d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~~~ 967 (1134)
..+++..+-+..+.|.+.++. |+....+ ........+|++.| .|.+..|-.... .|...+++.... . .+...
T Consensus 399 ~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~--~l~~~ 474 (628)
T 4a0p_A 399 YSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-E--VLFFS 474 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-E--EEECS
T ss_pred cCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-E--EEEec
Confidence 334555566677899999986 4444443 33456689999999 555555533332 465556654331 1 11111
Q ss_pred CCCCCCCcCceEEEECCCCcEEEEEE--CCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001160 968 AGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 968 ~~~~~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd 1045 (1134)
. ...+..+++.++++.|..+. .+.|...++++...+.+... ......++++.. +.+.++-...+.|...|
T Consensus 475 ~-----l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~--~~~~P~glav~~-~~ly~tD~~~~~i~~~~ 546 (628)
T 4a0p_A 475 G-----LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS--NILQPVGLTVFE-NWLYWIDKQQQMIEKID 546 (628)
T ss_dssp S-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--SCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred c-----CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcC--CCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence 1 13568999999988877753 57899999966655554421 134567777755 55556655667898899
Q ss_pred CCCcceeeecC
Q 001160 1046 AETLRFRCRIG 1056 (1134)
Q Consensus 1046 ~~~~~~~~~~~ 1056 (1134)
..+|+....+.
T Consensus 547 k~~G~~~~~i~ 557 (628)
T 4a0p_A 547 MTGREGRTKVQ 557 (628)
T ss_dssp TTSSSCCEEEE
T ss_pred CcCCCCcEEEe
Confidence 88877554443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.24 E-value=4.9e-09 Score=113.52 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=156.7
Q ss_pred CCcCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECC
Q 001160 407 AAISVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVV 485 (1134)
Q Consensus 407 h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~ 485 (1134)
+..---+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+ ++++. ++.|.+||..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334456889999654 5556667899999999886531 22 2456799999999998 45543 5689999998
Q ss_pred CCeeeEEecC----CCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCCCCcEEEEEECCC
Q 001160 486 AGRKQYTFEG----HEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSAD 552 (1134)
Q Consensus 486 ~~~~~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1134)
+++....... ....+..++++++ |.++++...+ ..-.+|.++.......+.........++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8875432221 1234778888764 4665554321 33456655543333333333345688999999
Q ss_pred CCEEEEEeeCCCCCCcEEEEeC--CCCeeE-----EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 553 GTRLFSCGTSKEGESHLVEWNE--SEGAIK-----RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
++.++.+.. ..+.|.+|++ .++... ..+..... ....++++++|+..++....+.|.+||..+++.+..
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ-IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGC-EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCC-CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 998876643 3567999987 455432 22222222 577899999998888877888999999999999988
Q ss_pred EeCCCCCCCcceEEEc-cCCCEEEEEeCC
Q 001160 626 VDADGGLPASPRLRFN-KEGSLLAVTTSD 653 (1134)
Q Consensus 626 ~~~~~~~~~v~~~~~s-~d~~~l~~~~~d 653 (1134)
+..+. ..+.+++|. |+++.|++++..
T Consensus 236 i~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 236 VKLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred EECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 87653 368999998 888877776654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=137.31 Aligned_cols=244 Identities=11% Similarity=0.126 Sum_probs=161.5
Q ss_pred cCCcCeEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC---
Q 001160 406 DAAISVNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--- 477 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--- 477 (1134)
+|...+..++|||||++||.+. ....|++||+.+++.+.. .+. ......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCC--EEEEEEecCccc
Confidence 4666789999999999999643 235799999999875432 121 1113678999 999 566666553
Q ss_pred ----------cEEEEECCCCee----eEEecC-CCCCeEEEEeeccCCccEEEEEec----CCeEEEEEccCCC-ceeEe
Q 001160 478 ----------MIKVWDVVAGRK----QYTFEG-HEAPVYSVCPHHKESIQFIFSTAI----DGKIKAWLYDYLG-SRVDY 537 (1134)
Q Consensus 478 ----------~i~iwd~~~~~~----~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~~ 537 (1134)
.|++|++.++.. +..... |...+.++.+++++ ++|+.... +..|++||+.++. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987653 333333 45567788887754 66654432 2589999998764 34455
Q ss_pred cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCCCEEEEEeC-CC--eE
Q 001160 538 DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGD-EF--QI 612 (1134)
Q Consensus 538 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 612 (1134)
..+....... ++++|..|+..+........|..+|+.++.. .+.+..+.. .+. .|++++++|+.... ++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-CEE--EEEEECCEEEEEEEECCeeEE
Confidence 5555544444 6778887776654222357899999987654 344555554 333 88999998887664 43 68
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC----CcEEEEECCCc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD----NGIKILANSDG 664 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d----g~i~iw~~~~~ 664 (1134)
++|++..+ ....+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 353 ~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 353 EQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 99998754 444554332 2245666778888877666554 78999998776
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=128.32 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=133.4
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCe-----------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFK-----------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i 908 (1134)
...+..+++++...++++|+...+.+|++++.. ...... +.. |+.++| ++++|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 446889999999999999996688889976433 112222 455 999999 57888888 8899999
Q ss_pred EEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcE
Q 001160 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988 (1134)
Q Consensus 909 wd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~ 988 (1134)
||+.+.........|..++.++.+.+.. +++++.||+|.+||++++.... +. ..|++++|||+| .
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~ 175 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-L 175 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-E
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-e
Confidence 9998776666677788889888876553 8889999999999999876421 11 368999999999 4
Q ss_pred EEEEECCeEEEEeCCCcc---eeccCC------CCCCCCCeEEEEEccCCCEEEE
Q 001160 989 LLVVHESQISVYDSKLEC---SRSWSP------KDALPAPISSAIYSCDGLLVYA 1034 (1134)
Q Consensus 989 l~~~~d~~v~vwd~~~~~---~~~~~~------~~~h~~~v~~v~~s~dg~~l~~ 1034 (1134)
.+...||++++|+..+.. .+.+.. ..+|...|.+|+|.++++++++
T Consensus 176 ~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 176 AVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 444689999999985554 333321 1246789999999999998876
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-10 Score=125.35 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=135.5
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
+++.+++++... ++++|+.+ .+.+|++..........-. ..+......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~---------~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDST---------PLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSC---------CCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccc---------cccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 699999999998 67778776 5556998765421110000 000001223556 999999 99999999
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
.++.|++||+.+..... ....|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998765333 45567888988877654 27778899999999999887653 456899999988
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCc--eeEe------c---CCCCcEEEEEECCCCCEEEEEe
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGS--RVDY------D---APGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
++ ++.|..||++++|+.+.... ...+ . .+...|.++.|.+++.++++-.
T Consensus 173 kG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 173 SQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred Cc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 64 68899999999999887664 4444 2 3567999999999999988654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-09 Score=116.36 Aligned_cols=234 Identities=11% Similarity=0.037 Sum_probs=158.2
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.....+.+|+|+|+.+++++..++.|..|+. +++... +..+...+..++++++|++++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~v 101 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLVH 101 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEEE
Confidence 45577899999999888888888999999987 343211 223556789999999999777
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecc-cCCeeEEEEecCCCcEEEEE----EcC-------------CCcEEEEECCC
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAFAHPNKQLCIVT----CGD-------------DKMIKVWDVVA 486 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s----g~~-------------d~~i~iwd~~~ 486 (1134)
+...++.|.+|+.+ ++.........+. ...+.++++.++|. +.+| |.. .+.|..||..+
T Consensus 102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 102 CEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp EETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred EECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 76667889999986 4322111111111 23477899999998 6665 332 35688888777
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEE
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
++..... .......++|+|++ ..|+.+... +.|.+|++..... .............++++++|++.+
T Consensus 179 g~~~~~~--~~~~p~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp CCCEEEE--EESSEEEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE
T ss_pred CcEEEEe--cCCCCcceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE
Confidence 7654433 44556788997754 666666554 7899999875431 111122233456789999999555
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEE
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 616 (1134)
+. . + .|.+|+. +++.+..+.... .+.+++|+++++.|+.++.++ ++.++
T Consensus 255 ~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 255 SS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 43 1 2 3999998 577777776554 477899999998888887654 44433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.6e-06 Score=98.19 Aligned_cols=526 Identities=10% Similarity=0.006 Sum_probs=268.8
Q ss_pred CCCeEEEEEcCCCC-ccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-eEEecCCCCCeEEEEe
Q 001160 428 SKHIVHLYTYNPTG-ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~i~~ 505 (1134)
....|+..++.+.. ... .+...-.....++|++.+.. ++.+-...+.|..+++..... ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34567888877542 111 11223445789999997774 444555577899999765432 2233333356888998
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
.+.. +.+.++-...+.|.+.+++.................+++.|.+.+|+.... ...+.|...++.... ...+..
T Consensus 92 D~~~-~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~-~~~l~~ 167 (619)
T 3s94_A 92 DWLG-EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSS-RFIIIN 167 (619)
T ss_dssp ETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCS-CEEEEC
T ss_pred EecC-CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCc-eEEEEe
Confidence 7643 256666667899999999865544444344456778999998777665532 124567777765332 222221
Q ss_pred ccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
..-...+.+++++++..|+.+. ..+.|...|++........... ......+++..+ .++++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 1222567899999877776654 5678999998765443333211 123467777665 44444445778999998777
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccc-cc-ccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL-VD-VKPRVAE 742 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 742 (1134)
.. ...+........ .+. .+.+..+...........-...+.+.. +. ..+...+
T Consensus 245 ~~-~~~i~~~~~~p~------------~i~------------v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C 299 (619)
T 3s94_A 245 EG-LREIHSDIFSPM------------DIH------------AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC 299 (619)
T ss_dssp CC-CEECCSCCCCCS------------EEE------------ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEEC
T ss_pred cc-cEEEecCCCCCc------------EEE------------EEccccCCCccccccCCCCcccceEECCCCCCCceEeC
Confidence 32 222211100000 000 000000000000000000000000000 00 0000000
Q ss_pred ccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCccccc
Q 001160 743 DVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQ 822 (1134)
Q Consensus 743 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~ 822 (1134)
..|.... ....+|.. ....+|+. +..+.|+..++....
T Consensus 300 ~~g~~l~----------------------~d~~~C~~--~~~~~Ll~-~~~~~i~~i~l~~~~----------------- 337 (619)
T 3s94_A 300 PTGVKLL----------------------ENGKTCKD--GATELLLL-ARRTDLRRISLDTPD----------------- 337 (619)
T ss_dssp CTTCCBC----------------------TTSSCBCS--SCSEEEEE-EESSCEEEEESSSTT-----------------
T ss_pred Cchheec----------------------ccCcccCC--CCceEEEE-EcccceEEEecCCCc-----------------
Confidence 0010000 00000000 01112222 223344444432111
Q ss_pred CCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE
Q 001160 823 PPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG 900 (1134)
Q Consensus 823 ~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg 900 (1134)
.......+.+ -..+.+++|.+.+..|..++ .+.|..++++.......+.........+++.+.++++..+-
T Consensus 338 ---~~~~~~~~~~----l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD 410 (619)
T 3s94_A 338 ---FTDIVLQLED----IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410 (619)
T ss_dssp ---CCCEECCCSC----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred ---cceeEEeccc----cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEe
Confidence 0111111222 34578899999777776665 68899999876443333433345677899987355566655
Q ss_pred eCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001160 901 MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 901 ~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
+..+.|.+.++........+...-....+|++.|....|..+. ....|...+++.... . .+... . .....
T Consensus 411 ~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~-~l~~~---~---l~~P~ 482 (619)
T 3s94_A 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-V-VLVNT---S---LGWPN 482 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E-EEECS---S---CSCEE
T ss_pred CCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-E-EEEeC---C---CCCCe
Confidence 5678999999875433222333345678999999744444443 235666666664331 1 11111 0 13578
Q ss_pred EEEECCCCcEEEEE--ECCeEEEEeCCCcceeccCC-CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcc
Q 001160 979 KVQFHNDQTHLLVV--HESQISVYDSKLECSRSWSP-KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLR 1050 (1134)
Q Consensus 979 ~~~fspdg~~l~~~--~d~~v~vwd~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~ 1050 (1134)
.+++++++..|..+ ..+.|..+++++...+.+.. ...| ..++++..+ .+.++-...+.|...|..+|.
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~---P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH---IFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCS---SCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCC---cEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 99999988777775 45789999986555444322 2222 335555443 444444455678888888773
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-09 Score=127.97 Aligned_cols=380 Identities=11% Similarity=0.066 Sum_probs=215.7
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+.+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 5777788899999999999998887543221 0 11122 2268888999999999999999988766
Q ss_pred cCC-C-CcEEEEEECC---CCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCcc-----------------------
Q 001160 538 DAP-G-NWCTMMAYSA---DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFR----------------------- 587 (1134)
Q Consensus 538 ~~~-~-~~v~~~~~s~---~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 587 (1134)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+-.+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1111111122 44 444443211 136789999999999887765211
Q ss_pred -------CcceEEEEEeCCCCEEEEEeCCCe-------------------EEEEECCCCeeEEEEeCCCCC-------CC
Q 001160 588 -------KRSLGVVQFDTTRNRFLAAGDEFQ-------------------IKFWDMDNMNMLTTVDADGGL-------PA 634 (1134)
Q Consensus 588 -------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1134)
......++++|++..++.+..++. |..||..+|+.+-.++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 001125788999899999887763 999999999999888653221 11
Q ss_pred cceEEEccCCC---EEEEEeCCCcEEEEECCCchhhhhhhcCCc-ccccCCCCCCCCCCCccccccCCCcccccccCCCC
Q 001160 635 SPRLRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRA-MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTL 710 (1134)
Q Consensus 635 v~~~~~s~d~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1134)
........+|+ .++.++.+|.++++|..+|+ ++....... .... .+. +
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~------------~~~---------------~ 358 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTK------------GMD---------------M 358 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEE------------EEE---------------T
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC-Eecccccccccccc------------ccC---------------c
Confidence 11112223565 78889999999999999993 322111100 0000 000 0
Q ss_pred CCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEe
Q 001160 711 ERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLAL 790 (1134)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 790 (1134)
..+..+.... ..|.... ....+..|.......-..++++|+..++++.
T Consensus 359 -----------------------~~~~pi~~~~----~~~~~~~-----~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~ 406 (689)
T 1yiq_A 359 -----------------------KTGRPILDEE----NAAYWKN-----GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIP 406 (689)
T ss_dssp -----------------------TTTEEEECHH----HHCTTTS-----SSCEEESSCTTCSSCSSCCEEETTTTEEEEE
T ss_pred -----------------------cCCCcccchh----hccccCC-----CCeeEeCCCcccccCCCcceECCCCCEEEEe
Confidence 0000000000 0000000 0011222322122333568999999988888
Q ss_pred eccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC---CCEEEEEe-CCeEEEE
Q 001160 791 ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN---DSYVMSAS-GGKVSLF 866 (1134)
Q Consensus 791 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d---g~~la~~s-dg~i~vw 866 (1134)
..+....++...... .|....+.. . .+.. +...|. +....... +|.|..|
T Consensus 407 ~~~~~~~~~~~~~~~--------------~~~~~~~~~---------~-~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~ 460 (689)
T 1yiq_A 407 AHIMSAYYEHIPEAP--------------KRNPFKSMY---------Q-LGLR--TGMMPEGAEGLLEMAKSWSGKLIAW 460 (689)
T ss_dssp EEECCEEEECCSSCC--------------CCCSCTTSC---------C-CSSE--ECCCCSSHHHHHHHHTTCEEEEEEE
T ss_pred ccccceeeeeccccc--------------ccccccccc---------c-cCcc--ccccCcccccCCCCCCCcceeEEEE
Confidence 777555544321100 011000000 0 0000 000010 00000001 4789999
Q ss_pred ECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc-eEEEEEecCCCEEEE
Q 001160 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 941 (1134)
Q Consensus 867 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s 941 (1134)
|+.+++.+..+..+.. +..-.++. .+.++++|+.||.++.||..+|+.+..++...+. ..-+.|+.||+..+.
T Consensus 461 D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 461 DPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp ETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9999999988875543 33335555 6678889999999999999999999988754332 244677888874443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-09 Score=114.50 Aligned_cols=223 Identities=13% Similarity=0.012 Sum_probs=150.2
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
-..+++|+|++..+++++..++.|..||..+++... + .....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 356889999877788888888999999998765321 1 123569999999999887765
Q ss_pred CCCeEEEEEcCCCCccceeeEEe-cc-cCCeeEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeeeEEecCCCCC
Q 001160 428 SKHIVHLYTYNPTGELRQHLEID-AH-VGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEGHEAP 499 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~h~~~ 499 (1134)
.+ .|.+||..+++... ..... +. ...+.+++++|+|+ ++++... .+.|..+| +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998775321 11111 11 23588999999998 4444332 24566666 55543 33233445
Q ss_pred eEEEEeeccCCccEE-EEEecCCeEEEEEcc--CC-Cc-----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 500 VYSVCPHHKESIQFI-FSTAIDGKIKAWLYD--YL-GS-----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 500 v~~i~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
...++|++++ +.+ ++.+.++.|.+||++ ++ .. ...+.........++++++|++.++.. +.+.|.
T Consensus 181 ~~~i~~s~dg--~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~ 254 (326)
T 2ghs_A 181 PNSICFSPDG--TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVD 254 (326)
T ss_dssp EEEEEECTTS--CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEE
T ss_pred cCCeEEcCCC--CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEE
Confidence 6788887754 555 444567899999986 43 21 112222345678899999998777654 256799
Q ss_pred EEeCCCCeeEEEecCccCcceEEEEEe-CCCCEEEEEe
Q 001160 571 EWNESEGAIKRTYSGFRKRSLGVVQFD-TTRNRFLAAG 607 (1134)
Q Consensus 571 ~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 607 (1134)
+||. +++.+..+..... .+.+++|+ ++++.|++++
T Consensus 255 ~~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred EECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEe
Confidence 9998 6777777776554 68999998 8888776654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-09 Score=118.80 Aligned_cols=267 Identities=9% Similarity=0.039 Sum_probs=163.1
Q ss_pred CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc------cCcceEEEEEeCCCCEEEEEeC-----CC
Q 001160 542 NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF------RKRSLGVVQFDTTRNRFLAAGD-----EF 610 (1134)
Q Consensus 542 ~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~-----dg 610 (1134)
..+..++++++|+.+++..... ++.+.+|.+.+++. ..+... .-..+..++++++++.+++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--QPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--CCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCC--CCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 5688999999999988864211 22134444435543 333211 1126889999999876665433 57
Q ss_pred eEEEEECCCCeeEEEEeCCCC----CCCcceEEEccCCCEE-EEEe---CCCcEEEEECCCchhhhhhhcCCcccccCCC
Q 001160 611 QIKFWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLL-AVTT---SDNGIKILANSDGVRLLRMLEGRAMDKNRCP 682 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l-~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1134)
.|.+||+.+++.+..+..... ...+..+++++++..+ ++.. .++.|.+||..++ +..+.+.+|....
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~---- 168 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIA---- 168 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTS----
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC-CEEEEecCCCccc----
Confidence 899999999998887764321 1245889999865454 4444 5789999998876 3322222211000
Q ss_pred CCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcccee
Q 001160 683 SEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIK 762 (1134)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~ 762 (1134)
T Consensus 169 -------------------------------------------------------------------------------- 168 (343)
T 2qe8_A 169 -------------------------------------------------------------------------------- 168 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCc
Q 001160 763 ALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEES 842 (1134)
Q Consensus 763 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~ 842 (1134)
... ..+.++|..+.+...++.++.| ...
T Consensus 169 ---------~~~---~~~~~~g~~~~~~~~~g~~~~~----------------------------------------~~~ 196 (343)
T 2qe8_A 169 ---------PED---IDLVIDGVPVQIGQPDGTVIRP----------------------------------------HLG 196 (343)
T ss_dssp ---------CCS---CCCEETTEECBEECTTSCEECC----------------------------------------CCC
T ss_pred ---------ccc---cceeECCEEEEeccCCCceece----------------------------------------ecc
Confidence 000 1123345444444455555444 223
Q ss_pred eEEEEeccCCCEEEEEe-C-CeEEEEECC---CCe-----EEE--EecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 001160 843 AACIALSKNDSYVMSAS-G-GKVSLFNMM---TFK-----VMT--MFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYN 910 (1134)
Q Consensus 843 i~~~~~s~dg~~la~~s-d-g~i~vwd~~---~~~-----~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd 910 (1134)
+..++++|||+.|+++. . ..+..++.. .+. ... ...++......+++++ +|+++++...++.|.+||
T Consensus 197 ~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEE
T ss_pred cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEE
Confidence 56788999998888776 4 345555432 110 000 1112334566799999 889999888899999999
Q ss_pred cCCceEEEEecC-cccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 911 VRVDEVKTKLKG-HQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 911 ~~~~~~~~~l~~-h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
..+++....... +.....+++|.++++++++.+..+.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 856764333332 245688999999999888877655443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-09 Score=125.77 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=129.4
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|+-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 5777777899999999999998877643211 1 12222 2268888899999999999999988877
Q ss_pred cCC-C----CcEEE-EEECCCCCEEEEEeeCCC--CCCcEEEEeCCCCeeEEEecCccCc--------------------
Q 001160 538 DAP-G----NWCTM-MAYSADGTRLFSCGTSKE--GESHLVEWNESEGAIKRTYSGFRKR-------------------- 589 (1134)
Q Consensus 538 ~~~-~----~~v~~-~~~s~~~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 589 (1134)
... . ..+.+ ... .+..+++++...+ .++.|+.+|..+|+.+.++......
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 2 11111 111 2345555442111 2578999999999998777543210
Q ss_pred -----------ceEEEEEeCCCCEEEEEeCCC-------------------eEEEEECCCCeeEEEEeCCCCC-------
Q 001160 590 -----------SLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL------- 632 (1134)
Q Consensus 590 -----------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------- 632 (1134)
....++++|++..++.+..++ .|..+|..+|+.+-.++...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 113578899999999877654 5999999999999887653221
Q ss_pred CCcceEEEccCC---CEEEEEeCCCcEEEEECCCc
Q 001160 633 PASPRLRFNKEG---SLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 633 ~~v~~~~~s~d~---~~l~~~~~dg~i~iw~~~~~ 664 (1134)
.....+....+| ..++.++.+|.++++|..+|
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 112222333477 68889999999999999998
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.4e-10 Score=121.58 Aligned_cols=269 Identities=9% Similarity=-0.033 Sum_probs=171.7
Q ss_pred CeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe-------
Q 001160 359 QTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF------- 427 (1134)
Q Consensus 359 ~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~------- 427 (1134)
.+++++...++ +|.+.|..+++.+.+ +.....+ .+++||||+++.++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~-------------------i~vG~~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEE-------------------EeCCCCC--ceEECCCCCEEEEEcccccccc
Confidence 34566655555 888999999987764 1112234 799999999999986
Q ss_pred ---CCCeEEEEEcCCCCccceeeEEec-c----cCCeeEEEEecCCCcEEEEEEc--CCCcEEE--EECCCCeeeEEecC
Q 001160 428 ---SKHIVHLYTYNPTGELRQHLEIDA-H----VGGVNDIAFAHPNKQLCIVTCG--DDKMIKV--WDVVAGRKQYTFEG 495 (1134)
Q Consensus 428 ---~dg~i~iwd~~~~~~~~~~~~~~~-h----~~~v~~l~~s~d~~~~~l~sg~--~d~~i~i--wd~~~~~~~~~~~~ 495 (1134)
.++.|.+||..+++.+..+. +.+ . ......++|+|||++ ++.+. .+..|.+ +|+.+ +.++..
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999988776332 110 0 123568999999995 44443 3567888 99877 444432
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccC----CCcee-----EecCCCCcEEEEEECCCCCEEEEEeeCCCCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----LGSRV-----DYDAPGNWCTMMAYSADGTRLFSCGTSKEGE 566 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 566 (1134)
- +. ..+.|.+. ..+++.+.|+.+.+.|+++ ..... .+.....+. . ++++..++..+.
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 1 11 12334433 4556677888888888876 22211 011112233 3 566666665542
Q ss_pred CcEEEEeCCCCe--eEEEecCcc------C---cceEEEEEeCCCCEEEEEeC---------CCeEEEEECCCCeeEEEE
Q 001160 567 SHLVEWNESEGA--IKRTYSGFR------K---RSLGVVQFDTTRNRFLAAGD---------EFQIKFWDMDNMNMLTTV 626 (1134)
Q Consensus 567 ~~i~~wd~~~~~--~~~~~~~~~------~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~ 626 (1134)
+.+.+.|..++. .+..+.... . .....+.++|++++++++.. ++.+.++|+.+.+.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 568889986532 333332110 0 01222689999998887533 235669999999998888
Q ss_pred eCCCCCCCcceEEEccCCC-EEEEEe-CCCcEEEEECCCchhhhhhhc
Q 001160 627 DADGGLPASPRLRFNKEGS-LLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 627 ~~~~~~~~v~~~~~s~d~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
.... ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 6543 468999999998 456666 5899999999998 5555443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-09 Score=114.12 Aligned_cols=225 Identities=11% Similarity=0.016 Sum_probs=150.9
Q ss_pred cceEEEEEecCCcc-eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 773 SKVVRLIYTNSGLS-LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
......+|+++|+. +++...++.|..|+.. +.... +.. + ...+..++++++
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~-~~~~~gl~~d~d 96 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--A-TAFTNGNAVDAQ 96 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--S-CSCEEEEEECTT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--C-CCccceeeECCC
Confidence 45678999999984 4555567888888631 11100 111 2 556889999999
Q ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEecC----CCCceEEEEEcCCCCcEEEE----EeC-------------CCcEEEE
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAI----GME-------------DSSVQIY 909 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~las----g~~-------------dg~i~iw 909 (1134)
|+++++.. ++.|.+|+.+ ++....... ....+..++++| +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99776655 5789999986 554322211 123467899999 8888876 332 2568888
Q ss_pred EcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEEC
Q 001160 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
|..+++..... .......++|+||++.|+.+... +.|.+|++..+............ ...+..+++.
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence 87677654433 44556889999999987777655 68999998765411111111111 1235678999
Q ss_pred CCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001160 984 NDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG 1039 (1134)
Q Consensus 984 pdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg 1039 (1134)
++|++.++. .+.|.+|+.+++.+..+... ..+.+++|++|++.|+.++.++
T Consensus 248 ~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~----~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDSDGQLLGHIPTP----GTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp TTSCEEECC-SSEEEEECTTSCEEEEEECS----SCCCEEEECTTSCEEEEEETTE
T ss_pred CCCCEEEec-CCcEEEECCCCCEEEEEECC----CceeEEEEeCCCCEEEEEcCCe
Confidence 999965555 55699999988777666543 2588999999999888877654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-08 Score=110.10 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=147.4
Q ss_pred eEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001160 411 VNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 411 V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
..+.+|+|++. ++++...++.|..||..+++.. .+. +...+.+++|+++|+ ++++. .+ .|.+||..+++.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~-~~~~v~~i~~~~dg~--l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHA-LPFMGSALAKISDSK--QLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEE-CSSCEEEEEEEETTE--EEEEE-TT-EEEEEETTTCCE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEE-CCCcceEEEEeCCCe--EEEEE-CC-CEEEEECCCCcE
Confidence 45678999755 5556667889999999876432 222 346799999999997 55544 34 499999988875
Q ss_pred eEEecC----CCCCeEEEEeeccCCccEEEEEec------CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 490 QYTFEG----HEAPVYSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 490 ~~~~~~----h~~~v~~i~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
...... ....+.++++++++ .++++... .+.|..++ + .....+.........++|+|+++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 432221 12357888887654 66555432 24455554 3 3333232223356789999999988766
Q ss_pred eeCCCCCCcEEEEeCC--CC-ee-----EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001160 560 GTSKEGESHLVEWNES--EG-AI-----KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.. .++.|.+|+.. ++ .. ...+..... ....++++++|+.+++...++.|.+||. +++.+..+..+.
T Consensus 197 ~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~-~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~- 270 (326)
T 2ghs_A 197 DT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG-GMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG- 270 (326)
T ss_dssp ET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS-EEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-
T ss_pred EC---CCCEEEEEEcccccCCcccCceEEEECCCCCC-CCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC-
Confidence 42 35679999986 55 32 222322222 5678999999988877767789999998 577777776553
Q ss_pred CCCcceEEEc-cCCCEEEEEeCC
Q 001160 632 LPASPRLRFN-KEGSLLAVTTSD 653 (1134)
Q Consensus 632 ~~~v~~~~~s-~d~~~l~~~~~d 653 (1134)
..+.+++|+ +++..|++++..
T Consensus 271 -~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 -KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -SBEEEEEEESTTSCEEEEEEBC
T ss_pred -CCcEEEEEecCCCCEEEEEecC
Confidence 358899998 888877666554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-08 Score=107.53 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=99.3
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCC---------CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGH---------EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 539 (1134)
.++.++.++.|..+|..+|+.+..+... ...+.+.. ..++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5777888999999999999988766542 12232221 11236788899999999999999988776655
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce-----EEEEEeCCCCEEEEEeCCCeEEE
Q 001160 540 PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL-----GVVQFDTTRNRFLAAGDEFQIKF 614 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i 614 (1134)
........... +..+++++ .++.|..+|..+|+.+..+..... .. ...... +..++++..++.+..
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~----~~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHT----SNGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEEC----TTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCceEcCCEEE--CCEEEEEc----CCCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 43321111221 34555554 367899999999998877765432 11 112222 457788888999999
Q ss_pred EECCCCeeEEEEeC
Q 001160 615 WDMDNMNMLTTVDA 628 (1134)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1134)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988776653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=118.61 Aligned_cols=222 Identities=7% Similarity=-0.087 Sum_probs=144.3
Q ss_pred eEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe----------CCCcEEEEEcCCceEEEEecCc-------c
Q 001160 862 KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKLKGH-------Q 924 (1134)
Q Consensus 862 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~----------~dg~i~iwd~~~~~~~~~l~~h-------~ 924 (1134)
+|.++|..+++.+.++.....+ .++|+| |++++.++. .++.|.+||+.+++.+.++... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8899999999999998865555 799999 788777775 3689999999999999887633 1
Q ss_pred cceEEEEEecCCCEEEEEcC--CCcEEE--EeCCCcccccceeeecCCC-CCCCCcCceEEEE-----------------
Q 001160 925 NRITGLAFSPTLNALVSSGA--DAQLCM--WSIDKWEKLKSRFIQAPAG-RQSPLVGETKVQF----------------- 982 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~--D~~i~i--Wd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~f----------------- 982 (1134)
.....++++|||++|+.+.. +..+.+ +|..+- . .+..... +..+...-..+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv---~--~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD---Q--LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE---E--EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc---e--EEECCCceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 23467999999999988764 456888 998761 1 1111000 0000000011122
Q ss_pred --------------------CCCCcE-EEEEECCeEEEEeCCCc---ceeccCCCC-------CCCCCeEEEEEccCCCE
Q 001160 983 --------------------HNDQTH-LLVVHESQISVYDSKLE---CSRSWSPKD-------ALPAPISSAIYSCDGLL 1031 (1134)
Q Consensus 983 --------------------spdg~~-l~~~~d~~v~vwd~~~~---~~~~~~~~~-------~h~~~v~~v~~s~dg~~ 1031 (1134)
++++.. +.++. +.|.+.|.... .+..+.... .+......++|+||+++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred CCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 223332 22234 66777776322 112221110 00111222689999998
Q ss_pred EEEEec-C--------CcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCC-EEEEEe-CCCcEEEEecC
Q 001160 1032 VYAGFC-D--------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN-QIALGM-SDGAVHVVEPS 1100 (1134)
Q Consensus 1032 l~~~~~-d--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~~~ 1100 (1134)
++++.. + +.+.++|+.+++.+.++... ..+.+++++| ||+ ++++.. .+++|.++|+.
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-----------~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-----------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred EEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-----------CCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 887643 2 35679999999999887633 3466899999 565 667777 69999999999
Q ss_pred CCcc
Q 001160 1101 DAEL 1104 (1134)
Q Consensus 1101 ~~~~ 1104 (1134)
+.+.
T Consensus 346 t~kv 349 (368)
T 1mda_H 346 SDQD 349 (368)
T ss_dssp SCEE
T ss_pred CCcE
Confidence 8883
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-08 Score=120.07 Aligned_cols=352 Identities=10% Similarity=0.057 Sum_probs=201.1
Q ss_pred CCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc----------ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee
Q 001160 553 GTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR----------SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622 (1134)
Q Consensus 553 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1134)
+..+++++. ++.|+.+|..+|+.+-++...... ....+++ ++..+++++.|+.|+.+|..+|+.
T Consensus 77 ~g~vyv~~~----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECC----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 445555543 567999999999998887654321 0112333 456888899999999999999999
Q ss_pred EEEEeCC-CCC--CCcce-EEEccCCCEEEEEeC------CCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCcc
Q 001160 623 LTTVDAD-GGL--PASPR-LRFNKEGSLLAVTTS------DNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1134)
Q Consensus 623 ~~~~~~~-~~~--~~v~~-~~~s~d~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1134)
+-.+... ... ..+.. ... .+..+++++. ++.|+.||..+|+ .+..+.........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~-~~W~~~~~~~~~~~------------ 215 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWRWFSVPGDPSK------------ 215 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEESSCCCTTS------------
T ss_pred EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc-EEEEeccCCCCccc------------
Confidence 9888754 210 01111 111 2345555543 6899999999993 33222211000000
Q ss_pred ccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccc
Q 001160 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1134)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1134)
. ...+ +.+.....|.... .... . .+..
T Consensus 216 -------------------------------~------~~~~-------~~~~g~~~w~~~g----~~~~---~--~~g~ 242 (677)
T 1kb0_A 216 -------------------------------P------FEDE-------SMKRAARTWDPSG----KWWE---A--GGGG 242 (677)
T ss_dssp -------------------------------C------CSSH-------HHHHHHTTSCGGG----CHHH---H--CEEC
T ss_pred -------------------------------c------cccc-------ccccccccccccC----ceeE---e--CCCc
Confidence 0 0000 0000111221000 0000 0 0011
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC------CCceEEE
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT------EESAACI 846 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~------~~~i~~~ 846 (1134)
.....+++.+++..++.+..++.. |....... ..+...-...+..+|..+|+........ .|. ......+
T Consensus 243 ~~w~~~~~d~~~~~vy~~~~~~~~--w~~~~~~~-~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~ 318 (677)
T 1kb0_A 243 TMWDSMTFDAELNTMYVGTGNGSP--WSHKVRSP-KGGDNLYLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILA 318 (677)
T ss_dssp CCCSCEEEETTTTEEEEECCCEES--SCHHHHST-TCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEE
T ss_pred ccccceeEcCCCCEEEEECCCCcc--ccCCCCCc-cCCCCeeeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEE
Confidence 222357788888888877766543 43221110 0011111113445566777655432111 010 1122333
Q ss_pred EeccCC---CEEEEEe-CCeEEEEECCCCeEEEEecCCC----------Cc-e------------------------EEE
Q 001160 847 ALSKND---SYVMSAS-GGKVSLFNMMTFKVMTMFMSPP----------PA-A------------------------TFL 887 (1134)
Q Consensus 847 ~~s~dg---~~la~~s-dg~i~vwd~~~~~~~~~~~~~~----------~~-i------------------------~~l 887 (1134)
....|| ..++.++ +|.+.++|..+++.+..+.... +. + ..+
T Consensus 319 ~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 319 DIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred ecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 444578 6778887 8999999999999987765221 00 1 157
Q ss_pred EEcCCCCcEEEEEeC-------------------------------------------CCcEEEEEcCCceEEEEecCcc
Q 001160 888 AFHPQDNNIIAIGME-------------------------------------------DSSVQIYNVRVDEVKTKLKGHQ 924 (1134)
Q Consensus 888 ~~s~~~~~~lasg~~-------------------------------------------dg~i~iwd~~~~~~~~~l~~h~ 924 (1134)
+|+| +..++++... .|.|..||+.+++.+..+. +.
T Consensus 399 a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~ 476 (677)
T 1kb0_A 399 SFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HV 476 (677)
T ss_dssp EEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ES
T ss_pred eEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CC
Confidence 8999 6667766543 2789999999999988876 44
Q ss_pred cceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 925 NRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 925 ~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
.++.+..++.++.+++.++.|+.+++||..+++.+....+. .+. ...-+.|+.+|+.+++
T Consensus 477 ~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~--~~~-----~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 477 SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TGV-----VAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCC-----CSCCEEEEETTEEEEE
T ss_pred CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC--CCc-----ccCCEEEEeCCEEEEE
Confidence 45556667778888999999999999999999976543322 221 2245667788886665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-08 Score=121.84 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceeeEEecccC----------Ce-eEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001160 420 GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG----------GV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 420 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
+..+++++.++.|.-+|..+|+.+-. +..+.. .+ ..++. ++. .++.++.|+.|+.+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~---~~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWK---YDPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEE---ECCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEE---EcCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 56777777888999999999886653 221111 01 11222 244 57888899999999999999
Q ss_pred eeEEecCC--CCCeEEEEeecc-CCccEEEEEe------cCCeEEEEEccCCCceeEecCCC------------------
Q 001160 489 KQYTFEGH--EAPVYSVCPHHK-ESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG------------------ 541 (1134)
Q Consensus 489 ~~~~~~~h--~~~v~~i~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~------------------ 541 (1134)
.+..+... ......+...|. .+ ..++.++ .++.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98776542 111111111110 02 3444443 37899999999999887664210
Q ss_pred -------------CcEEEEEECCCCCEEEEEeeCCC-----------CC----CcEEEEeCCCCeeEEEecCccC-----
Q 001160 542 -------------NWCTMMAYSADGTRLFSCGTSKE-----------GE----SHLVEWNESEGAIKRTYSGFRK----- 588 (1134)
Q Consensus 542 -------------~~v~~~~~s~~~~~l~~~~~~~~-----------~~----~~i~~wd~~~~~~~~~~~~~~~----- 588 (1134)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+-.++....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 00125788898888888764211 11 1499999999999988765311
Q ss_pred ---cceEEEEEeCCCC---EEEEEeCCCeEEEEECCCCeeEEEEeCCC--------------------------------
Q 001160 589 ---RSLGVVQFDTTRN---RFLAAGDEFQIKFWDMDNMNMLTTVDADG-------------------------------- 630 (1134)
Q Consensus 589 ---~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------- 630 (1134)
..........+|+ .++.++.+|.++++|..+|+++.......
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 0122223333564 68888999999999999999885443221
Q ss_pred -----CCCCcceEEEccCCCEEEEEeCCCcEEEEECC
Q 001160 631 -----GLPASPRLRFNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 631 -----~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+...-..++|+|+..++++...+....++...
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence 00011237899998899988887777666544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=108.78 Aligned_cols=238 Identities=12% Similarity=0.084 Sum_probs=148.4
Q ss_pred cCCcceEEeec-cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-
Q 001160 782 NSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS- 859 (1134)
Q Consensus 782 ~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s- 859 (1134)
+++++|++.+. ++.|.++|+.+....|.-..+. . ..++.. -.+ ......+..+||| +++++.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~i--e-------~~~~~~--~~g----~s~Ph~~~~~pdG-i~Vs~~g 156 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVI--E-------PEEVKK--VSG----YSRLHTVHCGPDA-IYISALG 156 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEE--C-------HHHHHH--HHC----EEEEEEEEECSSC-EEEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeee--c-------hhhccc--ccC----CCcccceeECCCe-EEEEcCC
Confidence 77888776554 6889999975432222111000 0 000000 001 1234567888999 555553
Q ss_pred C------CeEEEEECCCCeEEEEecCCCC---ceEEEEEcCCCCcEEEEEe-------------------CCCcEEEEEc
Q 001160 860 G------GKVSLFNMMTFKVMTMFMSPPP---AATFLAFHPQDNNIIAIGM-------------------EDSSVQIYNV 911 (1134)
Q Consensus 860 d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~lasg~-------------------~dg~i~iwd~ 911 (1134)
+ |.|.++|..+++.+.++..... --..+-|+| +++.+++.. .+.+|.+||+
T Consensus 157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 4 6899999999999999863222 234688899 888888774 3689999999
Q ss_pred CCceEEEEecCc--ccceEEEEE--ecCCCEEEEEc------CCCcEEEEeCCCcccccceeeecCCCC---CCC-----
Q 001160 912 RVDEVKTKLKGH--QNRITGLAF--SPTLNALVSSG------ADAQLCMWSIDKWEKLKSRFIQAPAGR---QSP----- 973 (1134)
Q Consensus 912 ~~~~~~~~l~~h--~~~i~~l~~--s~d~~~l~s~~------~D~~i~iWd~~~~~~~~~~~~~~~~~~---~~~----- 973 (1134)
.+++.+.++..- ......+.| +|+++++..++ .+++|.+|..+.++......+...... ..+
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888887642 123455656 99999887776 456888877665432221121111100 000
Q ss_pred ----CcCceEEEECCCCcEEEEEE--CCeEEEEeCC----CcceeccCCCCC-----C------CCCeEEEEEccCCCEE
Q 001160 974 ----LVGETKVQFHNDQTHLLVVH--ESQISVYDSK----LECSRSWSPKDA-----L------PAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 974 ----~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~----~~~~~~~~~~~~-----h------~~~v~~v~~s~dg~~l 1032 (1134)
...+..+.+||||++|.++. .+.|.+||+. .+.+..+..... | .+.-..+++||||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 13468899999999999964 6799999982 233333322100 0 1135788999999999
Q ss_pred EEEe
Q 001160 1033 YAGF 1036 (1134)
Q Consensus 1033 ~~~~ 1036 (1134)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.3e-09 Score=120.44 Aligned_cols=273 Identities=17% Similarity=0.113 Sum_probs=171.9
Q ss_pred CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE-e-CCCCEEEEEe------------------CCC
Q 001160 551 ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF-D-TTRNRFLAAG------------------DEF 610 (1134)
Q Consensus 551 ~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 610 (1134)
+||++++.+.. .+..|.+.|+.+.++...+..........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48899988653 46779999999999888554433335777887 5 9999999985 346
Q ss_pred eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCC
Q 001160 611 QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKP 690 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1134)
.+.+.|.++.+....+...+. ...++++|||+++++.+.+... + ..+......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~---------------- 228 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAA---------------- 228 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCC----------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccc----------------
Confidence 799999999999888875432 3668899999999998875321 1 000000000
Q ss_pred ccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcc
Q 001160 691 LTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSI 770 (1134)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~ 770 (1134)
.-..+.+.+....
T Consensus 229 ----------------------------------------------------~~d~v~V~~~~~~--------------- 241 (595)
T 1fwx_A 229 ----------------------------------------------------EMDHIVVFNIAEI--------------- 241 (595)
T ss_dssp ----------------------------------------------------SEEEEEEEEHHHH---------------
T ss_pred ----------------------------------------------------ccceEEEeeccce---------------
Confidence 0011112221100
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
..+.++|+.... +.|.+.|..+.+ +......++. .....++.++|
T Consensus 242 -------~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ipv----g~~PhGv~~sP 286 (595)
T 1fwx_A 242 -------EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIPI----ANNPHGCNMAP 286 (595)
T ss_dssp -------HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEEE----ESSCCCEEECT
T ss_pred -------eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEec----CCCceEEEEcC
Confidence 001233333222 235555543210 1110001111 23445799999
Q ss_pred CCCEEEEEe--CCeEEEEECCCCe------------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC---
Q 001160 851 NDSYVMSAS--GGKVSLFNMMTFK------------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--- 913 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~--- 913 (1134)
||+++++++ +++|.++|+.+.+ ...... -......++|+| +|...++...|+.|.+||+++
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~ 364 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIR 364 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhh
Confidence 999999887 7899999999653 333333 334578999999 776566677899999999987
Q ss_pred -------ceEEEEecCcccce-----EEEEEecCCCEEEEEcC---CCc----------EEEEeCCCcc
Q 001160 914 -------DEVKTKLKGHQNRI-----TGLAFSPTLNALVSSGA---DAQ----------LCMWSIDKWE 957 (1134)
Q Consensus 914 -------~~~~~~l~~h~~~i-----~~l~~s~d~~~l~s~~~---D~~----------i~iWd~~~~~ 957 (1134)
.+.+..+..|-.+- .++.++|||++|++... |+. -.++|+++++
T Consensus 365 ~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 365 AYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 56777776654321 23356899999998753 442 2789996655
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-07 Score=105.22 Aligned_cols=258 Identities=11% Similarity=0.070 Sum_probs=162.8
Q ss_pred EEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 001160 362 LLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441 (1134)
Q Consensus 362 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~ 441 (1134)
+.+++.++.|..+|..+|+.+.+... .......... .+..+++++.++.|..+|..+|+
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~~~~-------------------~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQTKV-------------------AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEEC-------------------SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCCEEEEEeC-------------------CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 45577899999999999987543111 0000111111 24578888899999999999987
Q ss_pred ccceeeEEecccCC-----eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCC-------eEEEEeeccC
Q 001160 442 ELRQHLEIDAHVGG-----VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP-------VYSVCPHHKE 509 (1134)
Q Consensus 442 ~~~~~~~~~~h~~~-----v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~-------v~~i~~~~~~ 509 (1134)
.+... ...... ....... + . .++.++.++.|..+|..+|+.+......... +..+...|.-
T Consensus 165 ~~W~~---~~~~~~~~~~~~~~~~~~-~-~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 165 VKWTV---NLDMPSLSLRGESAPTTA-F-G--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp EEEEE---ECCC-----CCCCCCEEE-T-T--EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred EEEEE---eCCCCceeecCCCCcEEE-C-C--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 65422 211111 0122222 3 3 5777888999999999999988766532110 0001111111
Q ss_pred CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCc
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 589 (1134)
.+..++.++.++.+..+|..+++........ ....+.. ++..++.++. ++.|..+|..+|+.+.........
T Consensus 238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~--~~~~l~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIV--DGNRIYLVDQ----NDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEE--ETTEEEEEET----TCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceE--ECCEEEEEcC----CCeEEEEECCCCcEEEeecccCCC
Confidence 2257888888999999999988877665532 2334433 3556666653 667999999999988776632221
Q ss_pred ceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEE
Q 001160 590 SLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 590 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~ 660 (1134)
.+...... +..+++++.+|.++++|..+++.+......... ....... .+..|++++.+|.|..|+
T Consensus 310 ~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-FQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-BCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-ceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 23333332 568888999999999999999998887753221 1112222 255788899999999886
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-08 Score=114.56 Aligned_cols=238 Identities=11% Similarity=0.041 Sum_probs=162.6
Q ss_pred EEecc-----CCCEEEEEe--CCeEEEEECCCCeEEEEecCC-CCceEEEEE-c-CCCCcEEEEEe--------------
Q 001160 846 IALSK-----NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP-PPAATFLAF-H-PQDNNIIAIGM-------------- 901 (1134)
Q Consensus 846 ~~~s~-----dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~lasg~-------------- 901 (1134)
.++|. ||+++.+.. ++.|.+.|+++.++...+.-. ......+++ + | +++++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 55665 999999887 578999999999988855432 245788898 5 8 788887774
Q ss_pred ----CCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCC-------------------------------
Q 001160 902 ----EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA------------------------------- 946 (1134)
Q Consensus 902 ----~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~------------------------------- 946 (1134)
.++.+.+.|.++.+.+.++.--. .-..++++|||+++++.+.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34689999999999888876322 346788999999999887553
Q ss_pred -------cEEEEeCCC--cccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeCCCc----------
Q 001160 947 -------QLCMWSIDK--WEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---------- 1005 (1134)
Q Consensus 947 -------~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~---------- 1005 (1134)
.|.+.|..+ ++.. ...+.. + ....++.|+|||++++++ .+.+|.++|+...
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLF-TRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSS-EEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEECcEEEEeCcccCCcee-EEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 356666665 2210 011111 1 235789999999999996 4688999999422
Q ss_pred ---ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------cceeeecCCcccccccccCCCCcc
Q 001160 1006 ---CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET----------LRFRCRIGPSAYIPTYAVSNTAHP 1072 (1134)
Q Consensus 1006 ---~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1134)
....... ......++|++||...++.-.|+.|.+||+++ .+.+.++..+. .|. |....
T Consensus 320 ~~~v~~~v~v----G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpG----h~~~~ 390 (595)
T 1fwx_A 320 RSAVVAEPEL----GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPG----HLKTV 390 (595)
T ss_dssp GGGEEECCBC----CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEE----EEEET
T ss_pred ccceEEEcCC----CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-ccc----cceec
Confidence 1122222 45788999999994445666799999999987 44555555431 211 11122
Q ss_pred EEEeecCCCCCEEEEEeCCC--cE-----------EEEecCCCc
Q 001160 1073 LVIAPHPSEPNQIALGMSDG--AV-----------HVVEPSDAE 1103 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg--~v-----------~vW~~~~~~ 1103 (1134)
.+...+| ||++|++++.-. .+ .++|++.++
T Consensus 391 ~g~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 391 MGETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTTSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cceEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 2345567 889999877532 23 789997666
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.8e-05 Score=90.14 Aligned_cols=207 Identities=11% Similarity=-0.004 Sum_probs=119.9
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
.-..+.+++|++.+..++.+-...+.|..+++........ ++...-.....+++.+.+..|.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~ly 99 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLY 99 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEEE
Confidence 3456889999997776776666677888888875421110 1122224688999999666555
Q ss_pred EE-eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEE-cCCCcEEEEECCCCeeeEEe-cCCCCCeE
Q 001160 425 VA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTF-EGHEAPVY 501 (1134)
Q Consensus 425 s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 501 (1134)
.+ ...+.|.+.++++..... .+...-.....|++.|.+.. +++|- +..+.|...++. |.....+ ...-....
T Consensus 100 ~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 100 WTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 54 567899999998643211 12233445778999998664 33332 334677777754 4333333 23345678
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
.+++++.. +.+.++-...+.|...|++.................+++..+ .++.+.. ..+.|...|..+++..
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCC
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCccc
Confidence 89987754 244555556778888888754433332222223346677655 5554432 3567888887776543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-07 Score=103.30 Aligned_cols=237 Identities=14% Similarity=0.152 Sum_probs=151.0
Q ss_pred e--cCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCC-cCeEEEEEcCCCCEEEEEeCC--
Q 001160 355 H--PQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA-ISVNRCVWGPDGLMLGVAFSK-- 429 (1134)
Q Consensus 355 s--pdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~i~~spdg~~las~~~d-- 429 (1134)
+ ++++++++.|-.++.|.|.|+.+..... ++-+... +..+..... ..-..+..+||| .++++..+
T Consensus 90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p----~~~k~ie-----~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREP----KIIKVIE-----PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp CTTCCSCEEEEEBTTTCCEEEEECCSCTTSC----EEEEEEC-----HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred CCCccCCEEEEccCCCCeEEEEECCCCCCCc----eeeeeec-----hhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 7 8999888999999999999997542110 0000000 000111111 134567888999 66666554
Q ss_pred ----CeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEc-------------------CCCcEEEEECC
Q 001160 430 ----HIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCG-------------------DDKMIKVWDVV 485 (1134)
Q Consensus 430 ----g~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~-------------------~d~~i~iwd~~ 485 (1134)
|.|.+.|..+.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||+.
T Consensus 160 g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~ 236 (462)
T 2ece_A 160 GEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR 236 (462)
T ss_dssp SCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred CCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence 789999999987665332 11122 2234688999999 677664 47899999999
Q ss_pred CCeeeEEecCC-C-CCeEEEEeeccCCccEEEEEe------cCCeEEEEEccCCCcee--E--ecCC-------------
Q 001160 486 AGRKQYTFEGH-E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRV--D--YDAP------------- 540 (1134)
Q Consensus 486 ~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~--~--~~~~------------- 540 (1134)
+++.+.++.-- . .....+.|..++++.++..++ .+++|.+|..+.+.... . +...
T Consensus 237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence 99888887642 1 234456564444556666655 56788887765422111 1 1110
Q ss_pred ---CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC---CeeEEEecCccC-------------cceEEEEEeCCCC
Q 001160 541 ---GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE---GAIKRTYSGFRK-------------RSLGVVQFDTTRN 601 (1134)
Q Consensus 541 ---~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 601 (1134)
......+.+|+||++|+++.. +.+.|.+||+.. .+.+..+..... +.-..+.++|||+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred ccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence 245678999999999998865 567899999853 355555543210 0246689999999
Q ss_pred EEEEEe
Q 001160 602 RFLAAG 607 (1134)
Q Consensus 602 ~l~~~~ 607 (1134)
+|+++.
T Consensus 394 ~LyVaN 399 (462)
T 2ece_A 394 RVYVTN 399 (462)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-08 Score=108.67 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=146.9
Q ss_pred CCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEE
Q 001160 852 DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGL 930 (1134)
Q Consensus 852 g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l 930 (1134)
+..+.+++ ++.|..+|.. ++.......+...+.++...+ ++. |.+++.++.|..||.. ++.+..+......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 34455565 8999999998 777777766666677778877 666 4457888999999998 88777776666677788
Q ss_pred EEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceecc
Q 001160 931 AFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSW 1010 (1134)
Q Consensus 931 ~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~ 1010 (1134)
.+.+++.+++.. +.|..+| .+++..... . ... ..+..+++.++|...+.+.++.+..+|.++..+..+
T Consensus 183 ~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~--~-~~~-----~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 183 SIGKDGTIYFGS---DKVYAIN-PDGTEKWNF--Y-AGY-----WTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRF 250 (330)
T ss_dssp EECTTCCEEEES---SSEEEEC-TTSCEEEEE--C-CSS-----CCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEE
T ss_pred EEcCCCEEEEEe---CEEEEEC-CCCcEEEEE--c-cCC-----cceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEe
Confidence 887888766544 7799999 665532211 1 111 346788889999887777788999998877666554
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeC
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMS 1090 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~ 1090 (1134)
... ...+.++.+.+++. |..++.+|.|..+|. +++.+...... . ....++..++ ++ .|..|+.
T Consensus 251 ~~~---~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~--------~--~~~~~~~~d~-~g-~l~~gt~ 313 (330)
T 3hxj_A 251 KTG---KRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETG--------S--WIIATPVIDE-NG-TIYFGTR 313 (330)
T ss_dssp ECS---SCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECS--------S--CCCSCCEECT-TC-CEEEECT
T ss_pred eCC---CCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcC--------C--ccccceEEcC-CC-EEEEEcC
Confidence 432 23344456665665 666788889999996 67766554321 1 1122334444 54 4566889
Q ss_pred CCcEEEEecCCCc
Q 001160 1091 DGAVHVVEPSDAE 1103 (1134)
Q Consensus 1091 Dg~v~vW~~~~~~ 1103 (1134)
+|.+++......+
T Consensus 314 ~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 314 NGKFYALFNLEHH 326 (330)
T ss_dssp TSCEEEEEC----
T ss_pred CCeEEEEeccccc
Confidence 9999988765433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.1e-10 Score=123.87 Aligned_cols=190 Identities=7% Similarity=-0.051 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 419 DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 419 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
++..+++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 67889999999999999999998765 3333 4566666667777 677788999999999999988777654321
Q ss_pred CeEEEEeeccC-CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 499 PVYSVCPHHKE-SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 499 ~v~~i~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
... ..+|.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||.++|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 011111 23578888999999999999988877665543 2345678888888764 677999999999
Q ss_pred eeEEEecCccCcceEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
+.+..+.... .....+..+. ..+++++.+|.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1223334432 5677888999999999999998877764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-08 Score=106.86 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=172.2
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
..+.++.+.++|. ++ .|+.+ |..+|. +++.+.... ..........+. +..|.++
T Consensus 60 ~~~~~~~~~~~g~-l~-v~t~~--l~~~d~-~g~~~~~~~-------------------~~~~~~~~~~~~--~~~l~v~ 113 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IY-FGSDK--VYAINP-DGTEKWRFD-------------------TKKAIVSDFTIF--EDILYVT 113 (330)
T ss_dssp EEEECCEETTTTE-EC-CSSCE--EEEECC-CGGGGGGSC-------------------C-----CCEEEE--TTEEEEE
T ss_pred CcccceEEecCCc-EE-EecCc--EEEECC-CCcEEEEEE-------------------CCCCcccCceEE--CCEEEEE
Confidence 3457788888886 44 34444 888885 555443211 111112223333 5567778
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
+.++.+..+|.. ++... ....+...+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...
T Consensus 114 t~~~~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~~g~---l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 114 SMDGHLYAINTD-GTEKW---RFKTKKAIYATPIVSEDGT---IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp CTTSEEEEECTT-SCEEE---EEECSSCCCSCCEECTTSC---EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred ecCCEEEEEcCC-CCEEE---EEcCCCceeeeeEEcCCCE---EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 889999999988 55433 3333445567777777776 5667788999999988 88777766555556666553
Q ss_pred ccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCc
Q 001160 507 HKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 586 (1134)
. ++. +..++ +.|..+| .+++...........+.++...++|...+... ++.|..+|. +++.+..+...
T Consensus 186 ~--~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~-----~~gl~~~~~-~g~~~~~~~~~ 253 (330)
T 3hxj_A 186 K--DGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL-----DGHLYAINP-DGTEKWRFKTG 253 (330)
T ss_dssp T--TCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET-----TTEEEEECT-TSCEEEEEECS
T ss_pred C--CCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC-----CCeEEEECC-CCCEeEEeeCC
Confidence 3 334 44455 8889999 66666666666666788888888887666542 456888874 56666665543
Q ss_pred cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCC
Q 001160 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSD 663 (1134)
Q Consensus 587 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~ 663 (1134)
.. .+..+.+.+++ .+..++.+|.|..+|. +++.+..+.... ..+.++...++|. |..++.+|.+++.....
T Consensus 254 ~~-~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~--~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 254 KR-IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS--WIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp SC-CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS--CCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CC-ccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC--ccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 32 34445565555 5667778889999996 677776666442 3567778878876 55688999999877643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.5e-10 Score=122.82 Aligned_cols=258 Identities=10% Similarity=0.001 Sum_probs=135.8
Q ss_pred CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001160 357 QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYT 436 (1134)
Q Consensus 357 dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd 436 (1134)
++. .+++|+.||.|..||..+|+.+.+ . .. +.+.+..+..++..+++++.|+.|+.||
T Consensus 8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~-------~------------~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 8 PET-LLFVSTLDGSLHAVSKRTGSIKWT-------L------------KE--DPVLQVPTHVEEPAFLPDPNDGSLYTLG 65 (369)
T ss_dssp CTT-EEEEEETTSEEEEEETTTCCEEEE-------E------------EC--CCSCCCC-----CCEEECTTTCCEEEC-
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEEEE-------e------------cC--CCceecceEcCCCEEEEeCCCCEEEEEE
Confidence 344 567888999999999999987643 1 11 3344555667888888888999999999
Q ss_pred cCCCCccceeeEEecccC-Cee-EEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEE
Q 001160 437 YNPTGELRQHLEIDAHVG-GVN-DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514 (1134)
Q Consensus 437 ~~~~~~~~~~~~~~~h~~-~v~-~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l 514 (1134)
..+|+.+.. +..+.. .+. +..+. ++. .+++|+.|+.|+.||..+|+.+..+..+.. ..++| ++..+
T Consensus 66 ~~tG~~~w~---~~~~~~~~~~~sp~~~-~~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v 133 (369)
T 2hz6_A 66 SKNNEGLTK---LPFTIPELVQASPCRS-SDG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLL 133 (369)
T ss_dssp ----CCSEE---CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC----------------------------E
T ss_pred CCCCceeee---eeccCccccccCceEe-cCC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEE
Confidence 998876542 222211 111 11111 233 577888899999999999999887765532 23344 44789
Q ss_pred EEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC---CEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcce
Q 001160 515 FSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG---TRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSL 591 (1134)
Q Consensus 515 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v 591 (1134)
++++.|+.|+.||..+++....+.... ....++..+. ..+++++ .++.++.||..+|+.+..+..... .+
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~----~dg~v~a~d~~tG~~~W~~~~~~p-v~ 206 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN----GDGLVVTVDSESGDVLWIQNYASP-VV 206 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE----TSCEEEEECTTTCCEEEEEECSSC-EE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC----CCCEEEEEECCCCcEEEEecCCCc-eE
Confidence 999999999999999888766543211 1223333332 4455554 377899999999998877764332 33
Q ss_pred EEEEEeCCCCEEEE--EeCCCeEEEEECCCCe----eEEEEeCCCCCCCcceEEEcc--CCCEEEEEeCCCcEEEEECC
Q 001160 592 GVVQFDTTRNRFLA--AGDEFQIKFWDMDNMN----MLTTVDADGGLPASPRLRFNK--EGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 592 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iw~~~ 662 (1134)
....+++++...+. ...++.++.+|..+|+ .+....... .+. +| .+..|++++.+|.++.++..
T Consensus 207 ~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~---~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 207 AFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK---ETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC---HHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc---ccc----ccccccceEEEecccCCEEecCcc
Confidence 33444555533210 0013345556655554 332222111 111 22 34567778888888887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-05 Score=84.41 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=144.2
Q ss_pred cCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC
Q 001160 409 ISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG 487 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~ 487 (1134)
..+..++|++++..|..+ ..++.|..++.+++.... .+.........+++++++.. +.++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 457899999976666555 457899999998654221 22222246789999998764 4555666789999997643
Q ss_pred eeeEEecCCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 488 RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 488 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
...............+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 3222222222456888988753 34444433 468888888754333333233456789999999888877653
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE 643 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 643 (1134)
+.+.|..+|.........+.... ....++.. +..++.+. ..+.|..+|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999987654433333322 23456654 45555544 66899999999999988886432 123577888887
Q ss_pred CC
Q 001160 644 GS 645 (1134)
Q Consensus 644 ~~ 645 (1134)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-06 Score=104.86 Aligned_cols=192 Identities=10% Similarity=0.082 Sum_probs=126.4
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCC----------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP----------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|.-+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666777899999999999998877543211 0 11122 1257888899999999999999988776
Q ss_pred cCCCC-cEEEEEECC--CCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCcc---C---------------------
Q 001160 538 DAPGN-WCTMMAYSA--DGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFR---K--------------------- 588 (1134)
Q Consensus 538 ~~~~~-~v~~~~~s~--~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~---~--------------------- 588 (1134)
..... ....+..+| .+..++++..+. ..++.|+.+|..+|+.+-++.... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 54311 000011111 133455443211 125789999999999988775311 0
Q ss_pred ------cceEEEEEeCCCCEEEEEeCCC-------------------eEEEEECCCCeeEEEEeCCCCC-------CCcc
Q 001160 589 ------RSLGVVQFDTTRNRFLAAGDEF-------------------QIKFWDMDNMNMLTTVDADGGL-------PASP 636 (1134)
Q Consensus 589 ------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 636 (1134)
.....++++++...++.+..++ .|..+|..+|+.+-.++...+. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 0112468888888888887665 4999999999999888753221 1122
Q ss_pred eEEEccCCC---EEEEEeCCCcEEEEECCCc
Q 001160 637 RLRFNKEGS---LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 637 ~~~~s~d~~---~l~~~~~dg~i~iw~~~~~ 664 (1134)
...+..+|+ .++.++.+|.++++|..+|
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNG 334 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence 222334665 6888999999999999998
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=0.0011 Score=78.70 Aligned_cols=492 Identities=9% Similarity=-0.013 Sum_probs=258.0
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~-~~dg~i~iwd~~ 438 (1134)
.|+++ ..+.|+.-++.+...... +....-..+..++|.+.+..|..+ ..++.|..++++
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34443 356888888876432111 001123457899999976666554 557899999987
Q ss_pred CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001160 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
+..... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|.. ..|+.+.
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--GFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT--TEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC--CeEEEeC
Confidence 653221 22222245778999887775 44556667889999976443222222344557889998754 3444443
Q ss_pred --cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEE
Q 001160 519 --IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQF 596 (1134)
Q Consensus 519 --~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 596 (1134)
..+.|...+++........ ........++++++++.|+.+-. +.+.|...|+..... ..+..... ....+++
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l~-~P~glav 215 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDLP-HPFGLTQ 215 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECCS-CEEEEEE
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccCC-CceEEEE
Confidence 3567888887755544433 34557889999999888887753 466799999875433 23332222 3456777
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE-EccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCc
Q 001160 597 DTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRA 675 (1134)
Q Consensus 597 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 675 (1134)
.. +..+++-...+.|...|..+++....+..... ....+. +++..+. + .+..- ..++ .+ .|.
T Consensus 216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~n~C~----~~ng-~C-----~~~ 278 (628)
T 4a0p_A 216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-WNECA----SSNG-HC-----SHL 278 (628)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-CCTTT----TTGG-GC-----SSE
T ss_pred EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-ceEec----cCCC-Cc-----chh
Confidence 64 33444444678899999877776666643211 223332 2221110 0 00000 0000 00 000
Q ss_pred ccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCC
Q 001160 676 MDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDI 755 (1134)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~ 755 (1134)
.... ....+.+.- .. -+.+.++ ...+. +...+++.+....|+-..+...
T Consensus 279 C~~~---------~~~~~~C~C-~~----g~~l~~d----------------~~~C~-~~~~~Ll~s~~~~i~~i~l~~~ 327 (628)
T 4a0p_A 279 CLAV---------PVGGFVCGC-PA----HYSLNAD----------------NRTCS-APTTFLLFSQKSAINRMVIDEQ 327 (628)
T ss_dssp EEEE---------TTTEEEEEC-ST----TCEECTT----------------SSCEE-CCSSEEEEEETTEEEEECCCTT
T ss_pred hhcC---------CCCCeeEEc-CC----CcEeccc----------------CCcCc-cccceeeeeccceEEEEecccc
Confidence 0000 000000000 00 0000000 01111 1123344444444544444321
Q ss_pred CCccceeEeecCCcccccceEEEEEecCCcceEEeec-cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccC
Q 001160 756 SDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDIN 834 (1134)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 834 (1134)
.... ..++-. .-..+..++|.+....|+.+.. .+.|+.+++..... . +.+.....
T Consensus 328 ~~~~----~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~-------~------------~v~~~~~~ 383 (628)
T 4a0p_A 328 QSPD----IILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG-------F------------TVVVSSVP 383 (628)
T ss_dssp CCCC----EECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E------------EEEC----
T ss_pred cCce----EEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCc-------e------------EEEEcccc
Confidence 1110 111111 2345778999887666655443 46676665421100 0 00000000
Q ss_pred CCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEe-cCCCCceEEEEEcCCCCcEEEEEeCCC--cEEEE
Q 001160 835 ESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF-MSPPPAATFLAFHPQDNNIIAIGMEDS--SVQIY 909 (1134)
Q Consensus 835 ~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~lasg~~dg--~i~iw 909 (1134)
+... ...+..+|+...++.|..+. .+.|.+.+++ ++....+ .........+++.|..|.+..+-.... .|...
T Consensus 384 ~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~ 461 (628)
T 4a0p_A 384 SQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA 461 (628)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred cccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEE
Confidence 0001 34578999999888776665 6889999996 4444443 334567899999994455444432222 56666
Q ss_pred EcCCceEEEEecCcccceEEEEEecCCCEEEEEc-CCCcEEEEeCCCcc
Q 001160 910 NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG-ADAQLCMWSIDKWE 957 (1134)
Q Consensus 910 d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D~~i~iWd~~~~~ 957 (1134)
+++...........-.....|++.++++.|..+. ..+.|...+++...
T Consensus 462 ~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 462 ALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 6653333222333344568999999877766554 45778888886543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=0.002 Score=81.64 Aligned_cols=283 Identities=7% Similarity=0.039 Sum_probs=144.6
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCC----CCEEEE
Q 001160 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD----GLMLGV 425 (1134)
Q Consensus 350 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd----g~~las 425 (1134)
.|+++-.+| +++.|+..|.=.+|.+.....-....+.+-+ .+ ..-++|.+++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~-----------~~-~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME-----------TF-TNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE-----------EE-CCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe-----------ee-cCcCCceeEEEEccCCCCCCeEEE
Confidence 556666666 5777888887788877653211000001000 01 23467777776432 234554
Q ss_pred Ee---CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEec---CCCcEEEEEEcCCCcEEEEECCCCeeeEEec--CCC
Q 001160 426 AF---SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAH---PNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE--GHE 497 (1134)
Q Consensus 426 ~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~--~h~ 497 (1134)
++ .+|.+++..-.-+-.......+. ....++.+.... ... +|+.+..+.+ .|+.+. ++.+..+. +-.
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf~ 470 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGFV 470 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTCC
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccccc
Confidence 43 46888887543221111111232 224555555432 223 6666665655 455542 22233221 111
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-CcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-NWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
.....++...-++ ..++=.. ...|++.+.........+.... ..|...+.+. .+++.+. .+.+..+.+..
T Consensus 471 ~~~~TL~~~~l~~-~~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~ 541 (1158)
T 3ei3_A 471 DDQQTFFCGNVAH-QQLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHP 541 (1158)
T ss_dssp SSSCEEEEEEETT-TEEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEET
T ss_pred CCCCcEEEEEcCC-CeEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeC
Confidence 1111111111111 2222222 2346667665444454555433 3566666553 4555553 24577777766
Q ss_pred CeeEEEecCccCcceEEEEEeCC------CCEEEEEeC-CCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc--CCCEE
Q 001160 577 GAIKRTYSGFRKRSLGVVQFDTT------RNRFLAAGD-EFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK--EGSLL 647 (1134)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l 647 (1134)
++.....+..-...|.|+++.|. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|
T Consensus 542 ~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L 620 (1158)
T 3ei3_A 542 QELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYL 620 (1158)
T ss_dssp TEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEE
T ss_pred CceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEE
Confidence 54332222112337999998763 368888885 99999999998777765544321 1233443332 34578
Q ss_pred EEEeCCCcEEEEEC
Q 001160 648 AVTTSDNGIKILAN 661 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~ 661 (1134)
..|-.||.+.-+.+
T Consensus 621 ~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 621 LCALGDGALFYFGL 634 (1158)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 88888998766654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-06 Score=103.48 Aligned_cols=109 Identities=10% Similarity=0.046 Sum_probs=71.8
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCCCCcE-----------EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeE
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWC-----------TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIK 580 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----------~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 580 (1134)
..++.++.++.|..+|..+++.+..+....... ..+++ .+..++.++ .++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LDGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TTSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CCCEEEEEECCCCCEe
Confidence 577788889999999999998888775433210 11222 345666664 3788999999999998
Q ss_pred EEecCccC---cceE-EEEEeCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeC
Q 001160 581 RTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 581 ~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1134)
-++..... ..+. ...+. +..++++.. +|.|+.+|..+|+.+-.+..
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeeccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 87765321 0111 11111 345555432 58999999999999988764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-06 Score=89.26 Aligned_cols=211 Identities=11% Similarity=0.022 Sum_probs=141.6
Q ss_pred ceEEEEeccCCCEEEEEe---CCeEEEEECCCCeEEEEecCCCC-ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 842 SAACIALSKNDSYVMSAS---GGKVSLFNMMTFKVMTMFMSPPP-AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+.-... ....++++. +++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555543 47899999999999988763222 233566653 455555557899999999999999
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeE
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQI 997 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v 997 (1134)
.++..-... ...+++||+.|+.+..++.|.++|.++.+......+. .++
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg---------------------------~~~-- 148 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK---------------------------YNG-- 148 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE---------------------------ETT--
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC---------------------------CCC--
Confidence 888632122 2445678887777777889999999886632211110 000
Q ss_pred EEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccc---cccCCCCccEE
Q 001160 998 SVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPT---YAVSNTAHPLV 1074 (1134)
Q Consensus 998 ~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 1074 (1134)
. .-.....+.|. ||+..+....++.|.+.|..+++.+.++......+. ........+.+
T Consensus 149 -------~----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 149 -------H----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp -------E----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred -------c----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEE
Confidence 0 01235677777 776555555678999999999999998875421110 00112245678
Q ss_pred EeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1075 IAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1075 ~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
++|+|+..++++++...+.|++-++...+
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999655688888888999999886543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-06 Score=86.97 Aligned_cols=208 Identities=8% Similarity=-0.027 Sum_probs=139.7
Q ss_pred ccceEEEEecCCCC--eeEEEEecCCCeEEEEEeC--CCcEEEEEccCccccccccceeeccccccccccccccccCCcC
Q 001160 335 LTKTVVRTLNQGSN--VMSMDFHPQQQTILLVGTN--VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAIS 410 (1134)
Q Consensus 335 ~~~~~~~~l~h~~~--V~~v~~spdg~~llasg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 410 (1134)
.+.+.+.++.|... ...++|+|||. ++++.+. ++.|.+.|+.+++.+.+.. +..+ ..
T Consensus 7 ~~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------------l~~~-~f 67 (266)
T 2iwa_A 7 YIVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHK-----------------MDDS-YF 67 (266)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEE-----------------CCTT-CC
T ss_pred cCceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEe-----------------cCCC-cc
Confidence 35677888887654 68999999975 6655543 5799999999998775411 1111 11
Q ss_pred eEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001160 411 VNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 411 V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
...+++. |+.|..+ -.++.+.++|..+.+.+. ++..-.. ....+++||+. ++.+..++.|.++|..+.+.
T Consensus 68 geGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~---~i~~g~~--~g~glt~Dg~~--l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 68 GEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK---NFTHQMK--DGWGLATDGKI--LYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE---EEECCSS--SCCEEEECSSS--EEEECSSSEEEEECTTTCCE
T ss_pred eEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE---EEECCCC--CeEEEEECCCE--EEEECCCCeEEEEECCCCcE
Confidence 2234443 5555554 458899999999887665 3321111 12446778885 33444688999999999988
Q ss_pred eEEecCCC-----CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC-------------CCcEEEEEECC
Q 001160 490 QYTFEGHE-----APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP-------------GNWCTMMAYSA 551 (1134)
Q Consensus 490 ~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~ 551 (1134)
+..+.-.. ...+.+.+. +|...+....++.|.+.|..+++....+... ......++|+|
T Consensus 139 ~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~ 215 (266)
T 2iwa_A 139 IKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ 215 (266)
T ss_dssp EEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET
T ss_pred EEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC
Confidence 88775321 235677775 3455555556899999999998887766542 13568999999
Q ss_pred CCCEEEEEeeCCCCCCcEEEEeCCC
Q 001160 552 DGTRLFSCGTSKEGESHLVEWNESE 576 (1134)
Q Consensus 552 ~~~~l~~~~~~~~~~~~i~~wd~~~ 576 (1134)
+++.+++.+. ....+...++..
T Consensus 216 ~~~~lfVTgk---~~~~v~~i~l~~ 237 (266)
T 2iwa_A 216 ENKRIFVTGK---LWPKLFEIKLHL 237 (266)
T ss_dssp TTTEEEEEET---TCSEEEEEEEEE
T ss_pred CCCEEEEECC---CCCeEEEEEEec
Confidence 9998887763 355677777654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.8e-05 Score=80.37 Aligned_cols=235 Identities=9% Similarity=-0.031 Sum_probs=144.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccc--eeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
.+|..+.. +.|+.+++++..... ....+......+..++|++++.. ++++...++.|..+++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 34555543 478889987654211 01112222345789999997764 455666678999999876554333333335
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
....+++++.. +.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 80 ~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~- 156 (267)
T 1npe_A 80 SPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT- 156 (267)
T ss_dssp CEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC-
T ss_pred CccEEEEEecC-CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC-
Confidence 67889987753 24555666678999999875443333333335678999999877776654311 1457888887533
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
....+....-.....+++++++..|+.+. ..+.|.++|.........+... .....++.. ++.++++....+.|.
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCCeEE
Confidence 22222211112567899999887776654 6689999999865544444321 233566654 343444444568999
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
.+|..++
T Consensus 233 ~~d~~~g 239 (267)
T 1npe_A 233 AMDLAIS 239 (267)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 9998877
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-06 Score=97.03 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=69.8
Q ss_pred cEEEEEec-CCeEEEEEc-cCCCceeEecCCCCc-E----------EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 512 QFIFSTAI-DGKIKAWLY-DYLGSRVDYDAPGNW-C----------TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 512 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-v----------~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
..++.++. ++.|..+|. .+++.+......... + ..+++ ++..++.++ .++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----ANGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CCCEEEEEECCCCC
Confidence 46666666 788888898 888887766543210 0 11222 345666654 37789999999999
Q ss_pred eEEEecCccC---cceE-EEEEeCCCCEEEEEeC------CCeEEEEECCCCeeEEEEeCC
Q 001160 579 IKRTYSGFRK---RSLG-VVQFDTTRNRFLAAGD------EFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
.+-++..... ..+. ..... +..+++++. ++.|+.+|..+++.+-.+...
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 8877654321 0111 11111 345666554 799999999999998887643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-05 Score=90.19 Aligned_cols=376 Identities=11% Similarity=0.018 Sum_probs=203.1
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeeeEEecCCCC-C---------e-EEEEeeccCCccEEEEEecCCeEEEEEccCCCcee
Q 001160 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEA-P---------V-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV 535 (1134)
Q Consensus 469 ~l~sg~~-d~~i~iwd~-~~~~~~~~~~~h~~-~---------v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 535 (1134)
.++.++. ++.|.-+|. .+|+.+.++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666 889999999 89998877653221 0 0 11222 22678888899999999999998887
Q ss_pred EecCCCC----cEEE-EEECCCCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccCc-------------------
Q 001160 536 DYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR------------------- 589 (1134)
Q Consensus 536 ~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 589 (1134)
....... .+.+ ... .+ ..+++++... ..++.|+.+|..+|+.+-++......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-EC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6654321 1111 111 13 3455544211 11678999999999988776543210
Q ss_pred ------------------ceEEEEEeCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCC---
Q 001160 590 ------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGL--- 632 (1134)
Q Consensus 590 ------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 632 (1134)
....+++.++...++.+..+ +.|..+|..+++.+-.++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00235677777777776532 36999999999998887643211
Q ss_pred -CCcce---EEEccCCC---EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccc
Q 001160 633 -PASPR---LRFNKEGS---LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAA 705 (1134)
Q Consensus 633 -~~v~~---~~~s~d~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1134)
..+.. +....+|+ .++.++.+|.+.++|..+++ .+......... .
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~-~~w~~~~~~~~-~-------------------------- 349 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN-LIVAEKVDPAV-N-------------------------- 349 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC-EEEEEESSTTC-C--------------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC-EEeeecccCCc-c--------------------------
Confidence 01111 22224674 57788889999999999983 32222110000 0
Q ss_pred cCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCc
Q 001160 706 IAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGL 785 (1134)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 785 (1134)
|.. .+ + ...++.+.... ... .......+..|.......-..++++|+..
T Consensus 350 --w~~-------------~~---d---~~~g~p~~~~~--------~~~--~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 350 --VFK-------------KV---D---LKTGTPVRDPE--------FAT--RMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp --SEE-------------EE---C---TTTCSEEECGG--------GCC--CTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred --ccc-------------cc---c---ccCCceecccc--------cCC--CCCCCceEECCCCccccCCCCceECCCCC
Confidence 000 00 0 00000000000 000 00000011111110111124678999988
Q ss_pred ceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEE
Q 001160 786 SLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSL 865 (1134)
Q Consensus 786 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~v 865 (1134)
++++...+....++.... ....+.. . -+.-..+..+|.+. + ...+|.|..
T Consensus 399 ~~yv~~~~~~~~~~~~~~------------------~~~~g~~---------~-~g~~~~~~~~~~~~-~-~~~~g~l~a 448 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFML------------------PYRAGQF---------F-VGATLAMYPGPNGP-T-KKEMGQIRA 448 (571)
T ss_dssp EEEEEEECEEEEEEECCC------------------CCCTTSC---------C-CCEEEEEEECTTST-T-SCCCEEEEE
T ss_pred EEEEEchhcccccccccc------------------ccccCCc---------c-ccccceeccCcccc-C-CCCCCeEEE
Confidence 888887765554443211 0001110 0 11111233334322 0 012578999
Q ss_pred EECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccc-eEEEEEecCCCEEEE
Q 001160 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNR-ITGLAFSPTLNALVS 941 (1134)
Q Consensus 866 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-i~~l~~s~d~~~l~s 941 (1134)
||+.+++.+.++.... .+....+.. .+.++++++.||.|+.||..+|+.+..+...... -.-+.+..+|+.++.
T Consensus 449 ~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 449 FDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp ECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 9999999888776322 222223333 3456777999999999999999999888643221 122345577775543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-06 Score=85.14 Aligned_cols=201 Identities=12% Similarity=0.060 Sum_probs=130.0
Q ss_pred CceEEEEeccCCCEEEEEe-CC--eEEEEECCCCeEEEEecCCCCce--EEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 841 ESAACIALSKNDSYVMSAS-GG--KVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
.....+.|+ ++.+..+.+ +| .|+++|+++++.+..+.... .. -.+++. ++++.+..-.++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 345778998 676666555 55 89999999999998886433 33 335554 34555555568999999999999
Q ss_pred EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
.+.++..-. ....+++|++.|+.+..++.|.++|.++.+......+.. +|
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~------------------~g--------- 168 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA------------------HG--------- 168 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE------------------TT---------
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc------------------CC---------
Confidence 999987432 223344677777776667889999998866332111100 00
Q ss_pred eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccc--ccCCCCccE
Q 001160 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY--AVSNTAHPL 1073 (1134)
Q Consensus 996 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 1073 (1134)
.. -..+..+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+-
T Consensus 169 ---------~~----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlN 228 (262)
T 3nol_A 169 ---------EE----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLN 228 (262)
T ss_dssp ---------EE----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEE
T ss_pred ---------cc----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceE
Confidence 00 1234456665 7776665556889999999999999998865433321 112224556
Q ss_pred EEeecCCCCCEEEEEeCCCcEE
Q 001160 1074 VIAPHPSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1074 ~~~~~~~d~~~l~s~~~Dg~v~ 1095 (1134)
+++|+|...+++++|-.--.++
T Consensus 229 GIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 229 GIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EEEEETTTTEEEEEETTCSEEE
T ss_pred EEEEcCCCCEEEEECCCCCceE
Confidence 8999996656666665444443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.59 E-value=0.0046 Score=76.18 Aligned_cols=572 Identities=11% Similarity=0.086 Sum_probs=300.0
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|+++.-..+|... .|+.+| +..||-..-+... .. -......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCC-cEEE
Confidence 3579999999999633 355565 5566632211100 00 01123568888877776 4555
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-----CCCCCe
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPV 500 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~v 500 (1134)
|+.+| +..||..+..... ........|.++.. .+|. |..++.+ -|..+|..+++.. .+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence 66665 7899987753211 00112235776654 4553 3344444 6888998776543 331 123457
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-ecC----CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-YDA----PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
.++.... +|.+. .++.+ -+..++..+...... ... ....|.++...+++..|..++. +-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 7776543 33444 45544 466777665432211 111 1224888888777765444442 128889987
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-----CCCCcceEEEccCCCEEEEE
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-----GLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~ 650 (1134)
+++... +.......|.++....+|...+. +. +-+.+++..+++......... ....|.++....+|.+-+ |
T Consensus 220 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-G 295 (758)
T 3ott_A 220 TGQIKQ-TEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-G 295 (758)
T ss_dssp TTEEEE-EEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-E
T ss_pred CCeEEe-ccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-E
Confidence 765432 22112226888888877766554 44 458888887665432221110 123477777777776444 5
Q ss_pred eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCc
Q 001160 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
+..| +.++..... ...+...
T Consensus 296 T~~G-l~~~~~~~~---~~~~~~~-------------------------------------------------------- 315 (758)
T 3ott_A 296 TDYG-ISLSRYNSA---LQFIPIS-------------------------------------------------------- 315 (758)
T ss_dssp ESSS-EEEECCCC----CEEEEHH--------------------------------------------------------
T ss_pred eCCc-ccccccCCc---eeEEecc--------------------------------------------------------
Confidence 5555 444322110 0000000
Q ss_pred ccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCC
Q 001160 731 SRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSG 810 (1134)
Q Consensus 731 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 810 (1134)
.. ........|.++....+|...+. +.+| +..++.......
T Consensus 316 --------------------~~--------------~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--- 356 (758)
T 3ott_A 316 --------------------QI--------------TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--- 356 (758)
T ss_dssp --------------------HH--------------SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---
T ss_pred --------------------cC--------------CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---
Confidence 00 00001234677777777774444 4455 334432211000
Q ss_pred CcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEe--cC----CCCce
Q 001160 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMF--MS----PPPAA 884 (1134)
Q Consensus 811 ~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i 884 (1134)
....+...... ..+ . ...|.++.-..+|.+-+.. ++.+..||..+++..... .. ....|
T Consensus 357 ------~~~~~~~~~~~---~~l----~-~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v 421 (758)
T 3ott_A 357 ------DAIWYRMGDKT---YPL----S-HNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWT 421 (758)
T ss_dssp ------CCEEECTTCSS---SCC----S-CSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSE
T ss_pred ------eeEEeccCCcC---CCC----C-CCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceE
Confidence 00000000000 001 1 4568999988888866543 668999999887654322 11 12458
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEcCC------ceEE--EEec---C-cccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRV------DEVK--TKLK---G-HQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 885 ~~l~~s~~~~~~lasg~~dg~i~iwd~~~------~~~~--~~l~---~-h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
.++...+ ++++.+ |+..+-|.++|..+ .... ..+. + ....|.++...++|++.+.++..+-|..+|
T Consensus 422 ~~i~~d~-~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d 499 (758)
T 3ott_A 422 YYIFEDT-AGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKIN 499 (758)
T ss_dssp EEEEECT-TSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEE
T ss_pred EEEEEcC-CCCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEe
Confidence 8888877 565554 77766788888653 1111 1111 1 123588999988998877444445588899
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEE
Q 001160 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLV 1032 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 1032 (1134)
..+++... .. ..+ ......+.++....+|.+.+.+ .+.+..|+........+....--...|.++... +|. |
T Consensus 500 ~~~~~~~~---~~-~~~-~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-l 571 (758)
T 3ott_A 500 PRTREVTK---LF-ADE-LTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-I 571 (758)
T ss_dssp TTTTEEEE---EC-TTT-SCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-E
T ss_pred CCCCceEE---ec-CCC-cCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEEecccCCCccceEEEEEC-CCC-E
Confidence 87765321 11 111 0001356788888889887765 456889998444443332111113568888763 554 5
Q ss_pred EEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1033 YAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
..++.+| |..+|..+.+... .. .+. .... ...+...+| .|..|+.+|-+ .++..
T Consensus 572 Wi~t~~G-l~~~~~~~~~~~~-~~----~~~----~~~~--~~~~~~~~G-~l~fG~~~Gl~-~f~p~ 625 (758)
T 3ott_A 572 WVSTTNG-LWIIDRKTMDARQ-QN----MTN----KRFT--SLLFDPKED-CVYLGGADGFG-ISHSN 625 (758)
T ss_dssp EEEESSC-EEEEETTTCCEEE-C------CC----CCCS--EEEEETTTT-EEEEECBSEEE-EEEC-
T ss_pred EEECCCC-eEEEcCCCceeEE-ec----CCC----Ccee--eeEEECCCC-cEEEecCCceE-EEChh
Confidence 5555555 8888988765432 11 111 1111 233333354 56667788844 45554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.59 E-value=0.0059 Score=77.39 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=105.9
Q ss_pred CeEEEEECCCCeEEEEecCC-CCceEEEE---EcCCCCcEEEEEe----------CCCcEEEEEcCCceEEEEe-cCccc
Q 001160 861 GKVSLFNMMTFKVMTMFMSP-PPAATFLA---FHPQDNNIIAIGM----------EDSSVQIYNVRVDEVKTKL-KGHQN 925 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~---~s~~~~~~lasg~----------~dg~i~iwd~~~~~~~~~l-~~h~~ 925 (1134)
+.|++.|-.+++.+..+.-. ...+.+++ |..+...++++|+ ..|.|.+|++..++..... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 45888888888877665432 33455544 4432357898887 3488999999755432221 22467
Q ss_pred ceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-CCeEEE--EeC
Q 001160 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-ESQISV--YDS 1002 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-d~~v~v--wd~ 1002 (1134)
+|++|+-- +|++|+.. ..+|++|++...+.+.... . .. ..+..+.....|.++++|. -..|.+ |+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~-~~------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-N-HY------NNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-E-EC------CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-e-cc------ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 78888744 56655554 4679999998755333111 0 01 1123333334567777764 234444 554
Q ss_pred CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1003 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
....+..+. .+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus 956 ~~~~L~~~a-~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNFEEIA-RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEEEEEE-ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeEEEEE-eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 444444333 24447789999997665 566788999999997764
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-05 Score=87.47 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=119.0
Q ss_pred EEEEcCCCcEEEEECCCCeeeEEecCCCCCe---------EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV---------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 470 l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v---------~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543449999999999987765432210 11122 1257888899999999999999988766543
Q ss_pred CC----cEE-EEEECC---CCC-EEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccC---------------------
Q 001160 541 GN----WCT-MMAYSA---DGT-RLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRK--------------------- 588 (1134)
Q Consensus 541 ~~----~v~-~~~~s~---~~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~--------------------- 588 (1134)
.. .+. +..+.. +|+ .+++++... ..++.|+.+|..+|+.+-+......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 233 454443211 1267899999999998776543210
Q ss_pred -------------------cceEEEEEeCCCCEEEEEeC--------------------C----CeEEEEECCCCeeEEE
Q 001160 589 -------------------RSLGVVQFDTTRNRFLAAGD--------------------E----FQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 589 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1134)
..-...+++|+...++.+.. | +.|..+|..+|+.+-.
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777778877653 2 6899999999999988
Q ss_pred EeCCCCC----CCcce-EEEc---cCCC---EEEEEeCCCcEEEEECCCch
Q 001160 626 VDADGGL----PASPR-LRFN---KEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 626 ~~~~~~~----~~v~~-~~~s---~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..+|+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 8643221 01111 2222 4674 78889999999999999993
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.8e-06 Score=84.48 Aligned_cols=182 Identities=14% Similarity=0.122 Sum_probs=128.0
Q ss_pred eeEEEEecCCCcEEEEEEcCCC--cEEEEECCCCeeeEEecCCCCCeE--EEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 456 VNDIAFAHPNKQLCIVTCGDDK--MIKVWDVVAGRKQYTFEGHEAPVY--SVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~h~~~v~--~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
...+.|+ ++. +..+.+.+| .|+++|+++|+.+..+.-.. ... .+++ .++ ...+..-.++.+.+||..+.
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCC-EEEEEEeeCCEEEEEECccC
Confidence 4788998 554 556666655 99999999999988876432 333 3444 332 44555556899999999999
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEEe
Q 001160 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+..+..... ...+++|++.|+.+. +.+.|.++|..+.+.+.++..... ..++.+.|. +|..++..-
T Consensus 118 ~~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 118 RQVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CEEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 98887765432 223446777777653 367799999999998888765321 134557776 665444444
Q ss_pred CCCeEEEEECCCCeeEEEEeCCCC----------CCCcceEEEccCCCEEEEEeC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADGG----------LPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+..|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 788999999999999999976421 123478999998887777665
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.1e-06 Score=99.77 Aligned_cols=248 Identities=12% Similarity=0.049 Sum_probs=136.1
Q ss_pred CeeEEEEe-cCCCeEEEEEeCCC----cEEEEEccCc-cccccccceeeccccccccccccccccCCcCeEEEEEcCCCC
Q 001160 348 NVMSMDFH-PQQQTILLVGTNVG----DISLWEVGSR-ERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1134)
Q Consensus 348 ~V~~v~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~ 421 (1134)
.+...+|| |||++++++.+.+| +|+++|+.++ +.+.. . + ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence 57889999 99996665555444 4999999998 63311 0 1 11245789999999
Q ss_pred EEEEEeCC-----CeEEEEEcCCCCccceeeEEe-cccCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCe-ee--E
Q 001160 422 MLGVAFSK-----HIVHLYTYNPTGELRQHLEID-AHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGR-KQ--Y 491 (1134)
Q Consensus 422 ~las~~~d-----g~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~-~~--~ 491 (1134)
.|+....+ ..|.++++.++..... ..+. ........+.|+|||+.+.+.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 3688888877643211 1222 223346788999999953333322 34578889988762 22 3
Q ss_pred Ee-cCCCCCeEEEEeeccCCccEEEEEecC----CeEEEEEccCCCceeE-ecCCCC--cEEEEEECCCCCEEEEEeeCC
Q 001160 492 TF-EGHEAPVYSVCPHHKESIQFIFSTAID----GKIKAWLYDYLGSRVD-YDAPGN--WCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 492 ~~-~~h~~~v~~i~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.+ .+......++.|+. + +.+++....+ ..|..+|+.+...... +..+.. .+..+.+. ++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~-g-~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-T-SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET-T-TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee-C-CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE-e
Confidence 33 33445556655432 2 2344444443 3566667654222122 222322 44555554 556655442 2
Q ss_pred CCCCcEEEEeC-------CCCeeEEEecCccCcceEEEEE----eCCCC-EEEEEeC---CCeEEEEECCCCee
Q 001160 564 EGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQF----DTTRN-RFLAAGD---EFQIKFWDMDNMNM 622 (1134)
Q Consensus 564 ~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~----~~~~~-~l~~~~~---dg~i~iwd~~~~~~ 622 (1134)
++...|.++++ .+++....+.......+..+.+ ++++. .+++.+. -..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 33456778886 3443133333222112222322 34554 3444332 25678888877664
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-05 Score=92.18 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=123.4
Q ss_pred EEEEEcC-CCcEEEEEC-CCCeeeEEecCCCCC-----------eEEEEeeccCC--ccEEEEEecCCeEEEEEccCCCc
Q 001160 469 CIVTCGD-DKMIKVWDV-VAGRKQYTFEGHEAP-----------VYSVCPHHKES--IQFIFSTAIDGKIKAWLYDYLGS 533 (1134)
Q Consensus 469 ~l~sg~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~i~~~~~~~--~~~l~s~~~d~~i~~wd~~~~~~ 533 (1134)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.|.++ ..+++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666776 889999999 899988776532211 11233322211 12388888999999999999988
Q ss_pred eeEecCCCC----cEEE-EEECCCCCEEEEEeeCC--CCCCcEEEEeCCCCeeEEEecCccCc-----------------
Q 001160 534 RVDYDAPGN----WCTM-MAYSADGTRLFSCGTSK--EGESHLVEWNESEGAIKRTYSGFRKR----------------- 589 (1134)
Q Consensus 534 ~~~~~~~~~----~v~~-~~~s~~~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 589 (1134)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-++......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 876554321 1111 111 134 444443211 12678999999999988776543210
Q ss_pred --------------------ceEEEEEeCCCCEEEEEeCC----------------CeEEEEECCCCeeEEEEeCCCCCC
Q 001160 590 --------------------SLGVVQFDTTRNRFLAAGDE----------------FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 590 --------------------~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
.-...++.++...++.+..+ +.|..+|.++|+.+-.++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00135667777888887654 489999999999998887543211
Q ss_pred ----Ccce---EEEc-cCC---CEEEEEeCCCcEEEEECCCch
Q 001160 634 ----ASPR---LRFN-KEG---SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 634 ----~v~~---~~~s-~d~---~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
.... +... .+| ..++.++.+|.+.++|..+|+
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 0111 1222 467 467778899999999999983
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.7e-06 Score=84.45 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=130.6
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCce--EEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAA--TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ - .... -.+++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 33456788873 44444445 789999999999988777 2 2233 335664 345555566789999999999999
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCe
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
+.++..- ..-..++ +|++.|+.+..++.|.++|.++.+.+....+.. +
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~------------------~----------- 176 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL------------------R----------- 176 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE------------------T-----------
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC------------------C-----------
Confidence 9998743 2223444 578877777778899999999876432211100 0
Q ss_pred EEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCccccccc---ccCCCCccE
Q 001160 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTY---AVSNTAHPL 1073 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1073 (1134)
+.. -..++.+.|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .......+-
T Consensus 177 -------g~~----------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlN 238 (268)
T 3nok_A 177 -------GQP----------VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLN 238 (268)
T ss_dssp -------TEE----------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEE
T ss_pred -------Ccc----------cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceE
Confidence 000 1234566665 7765555556889999999999999998865332211 111224556
Q ss_pred EEeecCCCCCEEEEEeCCCcE
Q 001160 1074 VIAPHPSEPNQIALGMSDGAV 1094 (1134)
Q Consensus 1074 ~~~~~~~d~~~l~s~~~Dg~v 1094 (1134)
+++|+|...++++||-.--.+
T Consensus 239 GIA~dp~~~rlfVTGK~Wp~~ 259 (268)
T 3nok_A 239 GIAVEPGSGRIFMTGKLWPRL 259 (268)
T ss_dssp EEEECTTTCCEEEEETTCSEE
T ss_pred EEEEcCCCCEEEEeCCCCCce
Confidence 899999777788877544433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-05 Score=87.44 Aligned_cols=238 Identities=13% Similarity=0.038 Sum_probs=147.0
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEec-C------------------CCCceEEEEEcCCCCcEEEEEe
Q 001160 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFM-S------------------PPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~-~------------------~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
...+++++++|+++.++. ++.|..||..+++...... . ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 356788999998666666 8999999987655432111 0 0135788999973454 44455
Q ss_pred CCCcEEEEEcCCceEEEEec----C-cccceEEEEEec-CCCEEEEEcC-----------------CCcEEEEeCCCccc
Q 001160 902 EDSSVQIYNVRVDEVKTKLK----G-HQNRITGLAFSP-TLNALVSSGA-----------------DAQLCMWSIDKWEK 958 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~----~-h~~~i~~l~~s~-d~~~l~s~~~-----------------D~~i~iWd~~~~~~ 958 (1134)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555688898776643 2221 1 112467899999 9988776543 36688888876653
Q ss_pred ccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeCCCc---ceeccCCCCCCCCCeEEEEEccCCCEEE
Q 001160 959 LKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE---CSRSWSPKDALPAPISSAIYSCDGLLVY 1033 (1134)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~---~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 1033 (1134)
.. ..... .....++|+|||++|.++ ..+.|.+|++.+. ....+... .+ ...++++++|++.+
T Consensus 178 ~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEE
T ss_pred EE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEE
Confidence 21 11111 234689999999977664 4578999998542 11222111 23 78899999998766
Q ss_pred EEec----------CCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1034 AGFC----------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1034 ~~~~----------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+... .+.|..+|.. |+.+..+.... +. ....+.++++. +++++++....+.|..+++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~----g~--~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP----PF--AGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT----TT--TTSCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECCC-CCEEEEEECCC----CC--ccccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 4678888874 77766654221 10 01233455552 56777777778889999876433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-05 Score=86.66 Aligned_cols=249 Identities=9% Similarity=0.032 Sum_probs=147.7
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCC---------CCccccccCCCCCCCCceE
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPS---------GTLMTNDINESKPTEESAA 844 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~h~~~~i~ 844 (1134)
...++++.++|+.+++...++.|..|+...... ..|.... +........ . ...+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~---~-~~~p~ 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF------------VDFAYASPYWNKAFCENSTDAEKRP---L-CGRTY 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE------------EEEEESCTTCCHHHHTTCCCGGGHH---H-HCCEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce------------EEEecccccccccccccccchhccc---c-CCCCc
Confidence 346788999998788888888888886532111 0000000 000000000 0 23468
Q ss_pred EEEecc-CCCEEEEEeCCeEEEEECCCCeEEEEecC-----CCCceEEEEEcCCCCcEEEEEeC----------------
Q 001160 845 CIALSK-NDSYVMSASGGKVSLFNMMTFKVMTMFMS-----PPPAATFLAFHPQDNNIIAIGME---------------- 902 (1134)
Q Consensus 845 ~~~~s~-dg~~la~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~lasg~~---------------- 902 (1134)
.+++++ +|+++++...+.|..+|..+++. ..+.. .......+++.+.+|++.++-..
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 899998 66555443456688888876542 22211 11346789998833555554322
Q ss_pred -CCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEE-EEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEE
Q 001160 903 -DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALV-SSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKV 980 (1134)
Q Consensus 903 -dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~-s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 980 (1134)
++.|..||..+++....... ......|+++||+++|. +-...+.|..+++.+...-......... . ...+
T Consensus 163 ~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------g-P~gi 234 (322)
T 2fp8_A 163 KTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------N-PGNI 234 (322)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS------S-EEEE
T ss_pred CCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC------C-CCCe
Confidence 36788999877764332221 22346799999998554 4456788999998863211111111111 2 5789
Q ss_pred EECCCCcEEEEE-E----------CCeEEEEeCCCcceeccCCCCCC-CCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 981 QFHNDQTHLLVV-H----------ESQISVYDSKLECSRSWSPKDAL-PAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 981 ~fspdg~~l~~~-~----------d~~v~vwd~~~~~~~~~~~~~~h-~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
++.++|+++++. . .+.|..+|.+++.+..+....+. ...++++++ .++++.++...++.|.++++..
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 999999977774 3 36788888887776666543321 245677776 5666666666788899998764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0078 Score=74.12 Aligned_cols=527 Identities=11% Similarity=0.058 Sum_probs=275.7
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
...|.++....+|. |. .|+.+| +..||..+...... .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~-lW-igT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LY-MGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE-EE-EEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc-EE-EEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEE
Confidence 35689988888885 43 455554 78899876532210 0111234777654 345 4555
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEe-----cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE-ecCC---
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEID-----AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT-FEGH--- 496 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~h--- 496 (1134)
++.+ -+..+|..+++.. .+. -....|.++....+|. +.+ |+.+ -|..+|..+++.... ....
T Consensus 118 gt~~-Gl~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~ 188 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQ 188 (758)
T ss_dssp EETT-EEEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTC
T ss_pred EcCC-cceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCcccc
Confidence 6666 5888898765321 121 1134588888877776 333 4444 577889777654321 1111
Q ss_pred -CCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 497 -EAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 497 -~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
...|.++.... ++..|..|+. +-+..+|..+.............|.++....+|...+.. . . -+.+++..
T Consensus 189 ~~~~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~ 259 (758)
T 3ott_A 189 SNLFVNSLLEDT--TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND 259 (758)
T ss_dssp SSCCEEEEEEET--TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred ccceeEEEEEEC--CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence 22477776543 3354555553 467778876543322111223468888888888776654 1 2 28888887
Q ss_pred CCeeEEEec------CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe-----CCCCCCCcceEEEccCC
Q 001160 576 EGAIKRTYS------GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD-----ADGGLPASPRLRFNKEG 644 (1134)
Q Consensus 576 ~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~d~ 644 (1134)
+++...... .-....|.++....+|...+ |...| +.++.... ....+. .......|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCC
Confidence 665432211 11223588888888776555 44556 54443322 122221 01112357777777777
Q ss_pred CEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCc
Q 001160 645 SLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISS 724 (1134)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1134)
.+.+ |+.+| +..++..++... .+
T Consensus 336 ~lWi-Gt~~G-l~~~~~~~~~~~--~~----------------------------------------------------- 358 (758)
T 3ott_A 336 FYWF-GGANG-LIRFTDPAGERH--DA----------------------------------------------------- 358 (758)
T ss_dssp CEEE-EETTE-EEEESCTTSSCC--CC-----------------------------------------------------
T ss_pred CEEE-eeCCc-ceeecccccccc--ee-----------------------------------------------------
Confidence 7554 45554 555554432000 00
Q ss_pred cCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccc
Q 001160 725 LGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRT 804 (1134)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~ 804 (1134)
..+..... . .......|.++....+|+..+ ++ ++-+..|+..+.
T Consensus 359 -----------------------~~~~~~~~--~---------~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 359 -----------------------IWYRMGDK--T---------YPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp -----------------------EEECTTCS--S---------SCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred -----------------------EEeccCCc--C---------CCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 00000000 0 000124567777777777444 44 345666764322
Q ss_pred cCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCC-----eEE---EE
Q 001160 805 ERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF-----KVM---TM 876 (1134)
Q Consensus 805 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~-----~~~---~~ 876 (1134)
+.. .+.... ...... ...|.++...++|.+.+....+.+.++|..+. ... ..
T Consensus 403 ~~~------------~~~~~~-------~~~~~~-~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~ 462 (758)
T 3ott_A 403 QFI------------HYNIVD-------NTGTYN-TNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQN 462 (758)
T ss_dssp EEE------------EEEEEC-------CC--CB-SSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEE
T ss_pred cEE------------EeecCC-------CcCCCC-CceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccc
Confidence 110 000000 000001 45688888888887666444667888886531 111 11
Q ss_pred ec---C-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC---cccceEEEEEecCCCEEEEEcCCCcEE
Q 001160 877 FM---S-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG---HQNRITGLAFSPTLNALVSSGADAQLC 949 (1134)
Q Consensus 877 ~~---~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~---h~~~i~~l~~s~d~~~l~s~~~D~~i~ 949 (1134)
+. + ....|.++...+ ++++.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +.
T Consensus 463 ~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~ 539 (758)
T 3ott_A 463 YSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VM 539 (758)
T ss_dssp ECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EE
T ss_pred cccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eE
Confidence 11 1 223589999988 777765334445588889887765432211 13467888888888877654 444 88
Q ss_pred EEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEc-cC
Q 001160 950 MWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CD 1028 (1134)
Q Consensus 950 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s-~d 1028 (1134)
.++..+++.... . ..+-. ...+.++... +|++.+++ ++.+..+|........+... ...+....+. +|
T Consensus 540 ~~~~~~~~~~~~---~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 608 (758)
T 3ott_A 540 RINPKDESQQSI---S-FGSFS--NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT---NKRFTSLLFDPKE 608 (758)
T ss_dssp EECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C---CCCCSEEEEETTT
T ss_pred EEecCCCceEEe---c-ccCCC--ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC---CCceeeeEEECCC
Confidence 888776543211 0 11111 1346777664 66655544 56688889855444443222 2233344444 46
Q ss_pred CCEEEEEecCCcEEEEeCC
Q 001160 1029 GLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 1029 g~~l~~~~~dg~I~vwd~~ 1047 (1134)
|. |+.|+.+|. ..++..
T Consensus 609 G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 609 DC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp TE-EEEECBSEE-EEEEC-
T ss_pred Cc-EEEecCCce-EEEChh
Confidence 65 666777774 455543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-05 Score=90.76 Aligned_cols=277 Identities=9% Similarity=0.063 Sum_probs=162.6
Q ss_pred EEEEecCCCe---EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 351 SMDFHPQQQT---ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 351 ~v~~spdg~~---llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.++++|.+.. .++.++.|+.|.-+|..+|+.+.+ ......... ..-...++ + -++ .+++++
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~-------~~~~~~~~~---~~~~ssP~----v-~~g-~V~vg~ 173 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK-------VENSDIKVG---STLTIAPY----V-VKD-KVIIGS 173 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE-------EECCCGGGT---CBCCSCCE----E-ETT-EEEECC
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEe-------ecCCCCCcc---ceeecCCE----E-ECC-EEEEEe
Confidence 4566654432 255678899999999999987643 211100000 00011111 1 144 444544
Q ss_pred ------CCCeEEEEEcCCCCccceeeEEecc----------------------------------cCCe-eEEEEecCCC
Q 001160 428 ------SKHIVHLYTYNPTGELRQHLEIDAH----------------------------------VGGV-NDIAFAHPNK 466 (1134)
Q Consensus 428 ------~dg~i~iwd~~~~~~~~~~~~~~~h----------------------------------~~~v-~~l~~s~d~~ 466 (1134)
.++.|+-+|..+|+.+-........ ...+ ..+++.++..
T Consensus 174 ~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g 253 (599)
T 1w6s_A 174 SGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN 253 (599)
T ss_dssp BCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT
T ss_pred cccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC
Confidence 3799999999999865422111000 0001 1356667776
Q ss_pred cEEEEEEcCC----------------CcEEEEECCCCeeeEEecCCCCCe------EE-EEeec-cCCc---cEEEEEec
Q 001160 467 QLCIVTCGDD----------------KMIKVWDVVAGRKQYTFEGHEAPV------YS-VCPHH-KESI---QFIFSTAI 519 (1134)
Q Consensus 467 ~~~l~sg~~d----------------~~i~iwd~~~~~~~~~~~~h~~~v------~~-i~~~~-~~~~---~~l~s~~~ 519 (1134)
+++.+..+ +.|..+|..+|+.+..++...... .. +.+.. ..+| ..++.++.
T Consensus 254 --~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~ 331 (599)
T 1w6s_A 254 --LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR 331 (599)
T ss_dssp --EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT
T ss_pred --EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECC
Confidence 45555443 489999999999987765422111 01 11111 1345 46777899
Q ss_pred CCeEEEEEccCCCceeEecCCC-------------CcE--------------------------EEEEECCCCCEEEEEe
Q 001160 520 DGKIKAWLYDYLGSRVDYDAPG-------------NWC--------------------------TMMAYSADGTRLFSCG 560 (1134)
Q Consensus 520 d~~i~~wd~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~s~~~~~l~~~~ 560 (1134)
+|.+.++|..+++.+....... .++ ..++++|+..++++..
T Consensus 332 ~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~ 411 (599)
T 1w6s_A 332 NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGI 411 (599)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEec
Confidence 9999999999988776543211 111 2456777777665532
Q ss_pred eC------------------------------CC-----CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE
Q 001160 561 TS------------------------------KE-----GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 561 ~~------------------------------~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
.+ .. ..+.|..||+.+|+.+-+..... +...-.+...+..++.
T Consensus 412 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 412 NHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFY 489 (599)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEE
T ss_pred cccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEE
Confidence 10 00 34789999999999887765321 1111112335678888
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA 648 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 648 (1134)
++.|+.++.||.++|+.+..++..... ...-+.+..+|+..+
T Consensus 490 gt~dg~l~A~D~~tG~~lW~~~l~~g~-~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 490 GTLDGYLKARDSDTGDLLWKFKIPSGA-IGYPMTYTHKGTQYV 531 (599)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEeeCCCCc-EeccEEEEeCCEEEE
Confidence 999999999999999999988765432 223456666776433
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.46 E-value=3e-05 Score=77.99 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=132.7
Q ss_pred CCceEEEEeccCCCEEEEEe-C--CeEEEEECCCCeEEEEecCCCCc-eEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce
Q 001160 840 EESAACIALSKNDSYVMSAS-G--GKVSLFNMMTFKVMTMFMSPPPA-ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE 915 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~ 915 (1134)
......+.|+. +.+..+.+ + ..|+++|+.+++.+....-.... --.+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44566889986 45555544 3 48999999999999887643322 2334554 44555556678999999999999
Q ss_pred EEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECC
Q 001160 916 VKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHES 995 (1134)
Q Consensus 916 ~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~ 995 (1134)
.+.++..-. .-.+++ +|++.|+.+..++.|.++|.++.+.+....+.. +
T Consensus 97 ~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~------------------~---------- 145 (243)
T 3mbr_X 97 PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA------------------G---------- 145 (243)
T ss_dssp EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE------------------T----------
T ss_pred EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc------------------C----------
Confidence 999987433 224444 577766666678889999999866432111100 0
Q ss_pred eEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccc---cCCCCcc
Q 001160 996 QISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA---VSNTAHP 1072 (1134)
Q Consensus 996 ~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 1072 (1134)
+.. -..++.+.+. +|+..+..-.+..|.+.|..+|+.+..+......+... ......+
T Consensus 146 --------g~~----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl 206 (243)
T 3mbr_X 146 --------GRP----------LDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL 206 (243)
T ss_dssp --------TEE----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred --------Ccc----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce
Confidence 000 1234455554 67766655567899999999999999988664433321 1122355
Q ss_pred EEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1073 LVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1073 ~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
-+++++|...++++||-.=-.++--.
T Consensus 207 NGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 207 NGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp EEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred EEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 68999996666777775555444333
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00012 Score=78.95 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=138.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCC-cEEEEECCC
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDK-MIKVWDVVA 486 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~-~i~iwd~~~ 486 (1134)
.....++|+++|+++++...++.|..||..+. ... .+ ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~---~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQI---HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEE---EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEE---EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 45678999999997777778899999998753 221 11 2234688999999998 444443 333 577778778
Q ss_pred CeeeEEecC-CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE-e-------c--CCCCcEEEEEECCCCCE
Q 001160 487 GRKQYTFEG-HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD-Y-------D--APGNWCTMMAYSADGTR 555 (1134)
Q Consensus 487 ~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~~~~ 555 (1134)
++....... .......++..+ ++..+++...++.|.++|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 775432221 122234444322 224455544688888888764321111 0 0 111234455 788888
Q ss_pred EEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC
Q 001160 556 LFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632 (1134)
Q Consensus 556 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1134)
|+.+.. ..+.|..+++.. ++. ...+... . ....++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~-~-~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ-T-NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES-C-CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc-C-CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 467899999864 321 1111111 1 34558899999887776677899999975 5553322222223
Q ss_pred CCcceEEEc---cCCCEEEEEeCC
Q 001160 633 PASPRLRFN---KEGSLLAVTTSD 653 (1134)
Q Consensus 633 ~~v~~~~~s---~d~~~l~~~~~d 653 (1134)
....+++|. ++++.|++++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEecccCCCCEEEEECCC
Confidence 457899998 888877776654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-05 Score=95.13 Aligned_cols=279 Identities=8% Similarity=0.002 Sum_probs=156.7
Q ss_pred eEEEEec-CCCeEEEEEeCCC-----------cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 350 MSMDFHP-QQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 350 ~~v~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.++++.| +|+ +++.|+.++ .+.+||..+++...... ....+.....++++.
T Consensus 189 ~~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~ 251 (656)
T 1k3i_A 189 AAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMD 251 (656)
T ss_dssp SEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEEC
T ss_pred eeEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCC
Confidence 3677888 776 777776432 58889988775432100 011233445567889
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCCccceeeEEecccCC-eeEEEEecCCCcEEEEEEc-CC-----CcEEEEECCCCee
Q 001160 418 PDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG-DD-----KMIKVWDVVAGRK 489 (1134)
Q Consensus 418 pdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~s~d~~~~~l~sg~-~d-----~~i~iwd~~~~~~ 489 (1134)
.+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++++ +++.|+ .+ ..+.+||..+++.
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CCCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcc
Confidence 99999999984 5689999988754221 1111 1122 23455667888 777777 44 5799999988765
Q ss_pred eEEe----cCCCCCeEEEEeeccCCccEEEEEecC---------CeEEEEEccCCCceeEecCC---------CCcEEEE
Q 001160 490 QYTF----EGHEAPVYSVCPHHKESIQFIFSTAID---------GKIKAWLYDYLGSRVDYDAP---------GNWCTMM 547 (1134)
Q Consensus 490 ~~~~----~~h~~~v~~i~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~---------~~~v~~~ 547 (1134)
...- ......-....+ ..++..++.++.+ ..+..||..+.......... ...-.++
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av 404 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 404 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred eeCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence 4320 000000000011 1122444555444 45678888766533222111 1122344
Q ss_pred EECC-CCCEEEEEeeCCCC----CC---cEEEEeCCCCeeEEEe--cCccCcceEEEEEeCCCCEEEEEeCC--------
Q 001160 548 AYSA-DGTRLFSCGTSKEG----ES---HLVEWNESEGAIKRTY--SGFRKRSLGVVQFDTTRNRFLAAGDE-------- 609 (1134)
Q Consensus 548 ~~s~-~~~~l~~~~~~~~~----~~---~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 609 (1134)
.|.. +++.++.++.+... .. .+.+||..+....... .......-.+....|+++.++.||.+
T Consensus 405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 4433 66677777642110 11 5788898877655443 22222123445677899999998754
Q ss_pred ---CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 610 ---FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 610 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
..+.+||..+.+....-..........+..+.+||++++.|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999987664432211111112234556789999999885
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.6e-05 Score=79.05 Aligned_cols=182 Identities=8% Similarity=0.057 Sum_probs=126.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe
Q 001160 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR 488 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~ 488 (1134)
.....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++.+ .+..-.++.+.++|..+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~L-y~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGERL-YQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSCE-EEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCEE-EEEEccCCEEEEEECCcCc
Confidence 345678887 4667777788899999999999887754 332 33333334456653 4445678999999999999
Q ss_pred eeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC-----CcEEEEEECCCCCEEEEEeeCC
Q 001160 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-----NWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 489 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
.+.++... ..-+.++. + +..|+.+..++.|.++|..+.+....+.... ..++.+.|. +|+.. +...
T Consensus 128 ~~~ti~~~-~eGwGLt~--D--g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw-- 198 (268)
T 3nok_A 128 RERTTRYS-GEGWGLCY--W--NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIW-- 198 (268)
T ss_dssp EEEEEECS-SCCCCEEE--E--TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEET--
T ss_pred EEEEEeCC-CceeEEec--C--CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEEC--
Confidence 99988743 22245543 3 3677777779999999999888776655422 144667776 67544 4332
Q ss_pred CCCCcEEEEeCCCCeeEEEecCc------------cCcceEEEEEeCCCCEEEEEe
Q 001160 564 EGESHLVEWNESEGAIKRTYSGF------------RKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
....|.+.|.++|+.+..+... .....+.++++|+++.|+..+
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 3567999999999998887643 122678999999887766655
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00011 Score=79.36 Aligned_cols=241 Identities=9% Similarity=0.005 Sum_probs=144.3
Q ss_pred ccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..+.... .+ .......
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~------~~---------------~~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI------HA---------------TVEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE------EE---------------ECSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceEE------EE---------------eCCCCce
Confidence 334566777776557889999999997 7777667889999987753211 11 1123588
Q ss_pred EEEEcCCCCEEEEEeCC--CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee-
Q 001160 413 RCVWGPDGLMLGVAFSK--HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK- 489 (1134)
Q Consensus 413 ~i~~spdg~~las~~~d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~- 489 (1134)
.+++.++|+++++.... ..|..+|..+++.. ....+ ........++..+++. .+++...++.|.++|..+++.
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 99999999976665433 24667777766532 11121 1122234555555544 455665688999999776532
Q ss_pred eEEec---------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCc---eeEecCCCCcEEEEEECCCCCEEE
Q 001160 490 QYTFE---------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 490 ~~~~~---------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+.... +.-.....+ ++++ +.++++-...+.|..++++.... ...+. .......++++++|++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~v 227 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYG 227 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEE
T ss_pred EEEECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEE
Confidence 21111 111233445 4443 23455566778999999875211 11111 112345688999998766
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEE--EecCccCcceEEEEEe---CCCCEEEEEeCC
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKR--TYSGFRKRSLGVVQFD---TTRNRFLAAGDE 609 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 609 (1134)
+.. ..+.|.++|.. ++... .+..... ...+++|. |+++.|+.++..
T Consensus 228 a~~----~~~~V~~~~~~-G~~~~~~~~~~~~~-~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 228 ATH----IYNSVVRIAPD-RSTTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECB----TTCCEEEECTT-CCEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred EeC----CCCeEEEECCC-CCEEEEeecccccC-CceEEEEecccCCCCEEEEECCC
Confidence 543 35679999975 65532 2332222 57889998 888777776543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-05 Score=88.42 Aligned_cols=170 Identities=14% Similarity=0.077 Sum_probs=109.1
Q ss_pred CcEEEEECCCCeeeEEecC--CCC----CeEE-EEeecc-CCc---cEEEEEecCCeEEEEEccCCCceeEecCCC----
Q 001160 477 KMIKVWDVVAGRKQYTFEG--HEA----PVYS-VCPHHK-ESI---QFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---- 541 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~~~~--h~~----~v~~-i~~~~~-~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---- 541 (1134)
+.|..+|..+|+.+..++. |.. .+.. +.+... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 6899999999999887653 321 1111 111111 244 378889999999999999888766543321
Q ss_pred ---------CcE--------------------------------EEEEECCCCCEEEEEeeC------------------
Q 001160 542 ---------NWC--------------------------------TMMAYSADGTRLFSCGTS------------------ 562 (1134)
Q Consensus 542 ---------~~v--------------------------------~~~~~s~~~~~l~~~~~~------------------ 562 (1134)
.++ ..++++|+...+++....
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 134667766666554310
Q ss_pred -----------CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC
Q 001160 563 -----------KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631 (1134)
Q Consensus 563 -----------~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1134)
.+..+.|..||+.+|+.+-+..... .+..-.....+..++.++.|+.++.||.++++.+..+.....
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 1235789999999999887765432 222111223466888899999999999999999999886543
Q ss_pred CCCcceEEEccCCCEEEE
Q 001160 632 LPASPRLRFNKEGSLLAV 649 (1134)
Q Consensus 632 ~~~v~~~~~s~d~~~l~~ 649 (1134)
. ...-+.|..+|+..++
T Consensus 529 ~-~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 529 I-VSPPITWEQDGEQYLG 545 (582)
T ss_dssp C-CSCCEEEEETTEEEEE
T ss_pred c-ccCceEEEECCEEEEE
Confidence 2 2234667677764443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.6e-05 Score=75.08 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=126.8
Q ss_pred CeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCeeeEEecCCCCC-eEEEEeeccCCccEEEEEecCCeEEEEEccCC
Q 001160 455 GVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRKQYTFEGHEAP-VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYL 531 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 531 (1134)
-...+.|+. +. +..+.+.+ ..|+.+|+.+|+.+..+.-.... -..+++. + +...+..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~-~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--R-DRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--C-CEEEEEEeeCCEEEEEECCcC
Confidence 466889986 43 55666665 48999999999998877533221 1334443 2 255556667999999999998
Q ss_pred CceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC----cceEEEEEeCCCCEEEEEe
Q 001160 532 GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK----RSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 532 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~ 607 (1134)
+.+..+...... ..+ +++++.|+.+. +++.|.++|..+.+.+.++..... ..++.+.+. +|..++..-
T Consensus 96 ~~~~ti~~~~~G-wgl--t~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG-WAL--TSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC-CEE--EECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc-eEE--eeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877654432 233 35677776652 467899999999998888765422 134556665 565444444
Q ss_pred CCCeEEEEECCCCeeEEEEeCCC-----------CCCCcceEEEccCCCEEEEEeC
Q 001160 608 DEFQIKFWDMDNMNMLTTVDADG-----------GLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+..|.+.|..+++.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 67899999999999999987431 1124578999998877776654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00049 Score=74.43 Aligned_cols=208 Identities=10% Similarity=-0.026 Sum_probs=132.6
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCC----CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++++..|..+. ++.|..+++.+ ......+.........+++.+.++++.++-..++.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 44578899999877777666 68999999876 2222223323345688999873555555556778999999875
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEcCC--CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........++++.|++..|..+... +.|...+++.... . .+.... ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~--~~~~~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y--SLVTEN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E--EEECSS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E--EEEECC-----CCCceEEEEeccCCEEEE
Confidence 44333333334567899999976655554432 6788888764321 1 111111 134689999998887777
Q ss_pred E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+|+.+.....+............+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 4578999999665554443221123456778884 45666666677889999988887665553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00067 Score=74.41 Aligned_cols=206 Identities=11% Similarity=0.037 Sum_probs=135.0
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
...+..++|++.+..|.... .+.|..+++........+.........+++.+.++++..+-...+.|.+.+++.....
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 44578999998777777665 6889999998765444444333456789998745566666666789999998755433
Q ss_pred EEecCcccceEEEEEecCCCEEEEE-cCC-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSS-GAD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~-~~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
..+........++++.|++..|..+ ... +.|...+++..... .+.. .+ ......++|+|++..|..+ .
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~-~~----~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---IIAD-TH----LFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---ESCC-SS----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---EEEE-CC----CCCcceEEEeCCCCEEEEEECC
Confidence 3333344567899999966555444 344 67888887753311 1111 11 1346899999988777775 4
Q ss_pred CCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 994 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.+.|..+++++.....+.... .....++++ ..+.+.++-...+.|..++..+|+.+..+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 578999999665444333221 345678888 455556666677889999877777665554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0015 Score=71.64 Aligned_cols=248 Identities=11% Similarity=-0.008 Sum_probs=150.8
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA 426 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~ 426 (1134)
+..+|.+..+++ .++++ ..+.|+..++....... +......+..++|.+.+..|..+
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677777744 34443 24567777776543211 11123347899999866665555
Q ss_pred -eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 427 -FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 427 -~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
...+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 467889999988754222 12222334678999986664 4555666789999997644333333334456788999
Q ss_pred eccCCccEEEEEecC-CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec
Q 001160 506 HHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 584 (1134)
+|.. +.++++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.
T Consensus 167 dp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecCc-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 8754 2455555555 78888888754433333333456789999998888877643 46789999986533322232
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 45567773 34444555567788888866666655554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0033 Score=68.19 Aligned_cols=281 Identities=9% Similarity=-0.008 Sum_probs=151.0
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
....+.+|.|.+++. ++++| ..|.| ++..+.|+. |..... ........+.+++|.+ +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 345799999988876 56655 45654 333333331 111000 0011344688999976 44444
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee-EEecCCCCCeEEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ-YTFEGHEAPVYSV 503 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i 503 (1134)
++..+.|.. ..+.|+..........+...+..+.+.+++. .++.+. ++.|..- ...|+.- ....++...+..+
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S-~DgG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRT-KDSGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEE-SSTTSSEEEEECSCCCCEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEE-cCCCCCCEEeecCCCcceEEE
Confidence 456664433 4455554442211112334578888877776 555554 5544322 1234332 2233456678888
Q ss_pred EeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe
Q 001160 504 CPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583 (1134)
Q Consensus 504 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 583 (1134)
++.+. +.+++.+...+..+-+|-....-...-......+..+.+.+++..++.+. ++.+++.+...|+.-..+
T Consensus 169 ~~~~~--~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 169 NRSPS--GEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp EECTT--SCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EEcCC--CcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 88764 35665554433333333211111111223455788999999988776552 556666643323332222
Q ss_pred cCc---cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEccCCCEEEEEeCCCcEEEE
Q 001160 584 SGF---RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNKEGSLLAVTTSDNGIKIL 659 (1134)
Q Consensus 584 ~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw 659 (1134)
... ....+..+.+.+++..++++ .+|.| .+..+.++.-..+... .....+.++.|.+++ .+++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence 211 11257888898877666655 46766 4555666655554421 112357889887655 46667788887666
Q ss_pred E
Q 001160 660 A 660 (1134)
Q Consensus 660 ~ 660 (1134)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00022 Score=72.98 Aligned_cols=203 Identities=12% Similarity=0.114 Sum_probs=131.3
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecC-CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV 916 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~ 916 (1134)
...+..++++|++..|.+.. ++.|...|.. ++.++.+.- -....-.+++.+ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCC
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCe
Confidence 45799999999877666554 6889999998 888777642 234678889988 787777655678999998875432
Q ss_pred ---EEEec------CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCC---cccccceeeecCC-CCCCCCcCceEEEEC
Q 001160 917 ---KTKLK------GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDK---WEKLKSRFIQAPA-GRQSPLVGETKVQFH 983 (1134)
Q Consensus 917 ---~~~l~------~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~-~~~~~~~~v~~~~fs 983 (1134)
+.... .......+|+|+|+++.|.++.......+|.++. ...+ ..+.... ........+..+++.
T Consensus 104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l--~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL--HISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC--EEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce--eeecchhhccccccCCceeEEEc
Confidence 22221 1234468999999997777776655556666642 1111 1111100 000011356899999
Q ss_pred CCCcEEEE-E-ECCeEEEEeCCCcceeccCCCCCC------CCCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001160 984 NDQTHLLV-V-HESQISVYDSKLECSRSWSPKDAL------PAPISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 984 pdg~~l~~-~-~d~~v~vwd~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~ 1047 (1134)
|....|.+ + ..+.+.++|.+++.+..+.-..+. -..-..|+|.++|+ |+.+++-..+++|.-.
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 98776666 4 357788999987755554333221 13668999999998 4445777777777543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0011 Score=73.86 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=151.6
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEE-
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVA- 426 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~- 426 (1134)
.-+|.+..+.+ .++++ ..+.|+..++.++.... +......+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEe
Confidence 34566666644 34443 34678888877643221 11223457899999866655544
Q ss_pred eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEee
Q 001160 427 FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPH 506 (1134)
Q Consensus 427 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 506 (1134)
...+.|..++.+++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 567889999988754221 12222234578899987664 45556667789998876443333333344567889988
Q ss_pred ccCCccEEEEEecC-CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 507 HKESIQFIFSTAID-GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 507 ~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
|.. +.++++-... +.|...+++.................++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 754 2444444444 78888888765444444444556789999998888877643 466799999764433323332
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 287 ~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 287 GLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222 45667773 34455555577888888876776666665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00042 Score=77.30 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=136.2
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
...+..++|++.+..|.... .+.|..+++........+.........+++.+.++.+.++-...+.|.+.+++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 45578999998777777665 6889999998766544444334456788998745555566566788999988755433
Q ss_pred EEecCcccceEEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
..+........+|++.|++..|..+. .. +.|...+++..... .... .+ ......++|+|++..|..+ .
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--~~~~--~~----~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--IIAD--TH----LFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC--SS----CSCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--EEEE--CC----CCCeeeEEEeCCCCEEEEEECC
Confidence 33443445678999998766555544 33 67888887653311 1111 11 1346899999888877774 4
Q ss_pred CCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 994 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.+.|..+|+.+.....+.... .....++++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 678999999665444333221 345678888 455666666677889999977787766654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0002 Score=81.00 Aligned_cols=248 Identities=8% Similarity=0.009 Sum_probs=147.7
Q ss_pred ceEEEEeccC--CCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC---C-cEEEEEcCCc
Q 001160 842 SAACIALSKN--DSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED---S-SVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~d--g~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d---g-~i~iwd~~~~ 914 (1134)
....++++|+ +..|..+. .+.|+.+|..+++..... ........++|++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 45555555 588999999877765443 3455689999999 77755443311 1 2333333222
Q ss_pred eE-EEEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE
Q 001160 915 EV-KTKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 915 ~~-~~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
.. ...+. .......+++.| ++.+.++-..++.|+.++..++...... ...... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCCC-----CCcccEEEeCCCCEEEEE
Confidence 11 01121 223346788999 6777766667788999998876542211 111111 123579999999966664
Q ss_pred --ECCeEEEEeCCC--cce---eccCC---CCC---------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEE
Q 001160 993 --HESQISVYDSKL--ECS---RSWSP---KDA---------LPAPISSAIY---------SCDGLLVYAGFCDGAIGVF 1044 (1134)
Q Consensus 993 --~d~~v~vwd~~~--~~~---~~~~~---~~~---------h~~~v~~v~~---------s~dg~~l~~~~~dg~I~vw 1044 (1134)
..+.|..++... ..+ ..+.. ..+ ....-..+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 457899988632 211 11111 001 1234667999 6777777776677889999
Q ss_pred eCCCcceeeecCCccc------ccc--cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1045 DAETLRFRCRIGPSAY------IPT--YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1045 d~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
+. +|... ++..... ... .....-.+|.+++++|.+++++++-...+.|+..++.
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 56433 3222110 000 0011224688999996588888887778889888764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0043 Score=67.30 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=113.4
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEECCCCeEE-EEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEE-EEc--CCceE
Q 001160 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI-YNV--RVDEV 916 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~i-wd~--~~~~~ 916 (1134)
..+..+++.+++..++++.+|.|.. ..+.++.- .....+...+..+++.+ ++.+++++. +|.++. +|- .+.+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 4567788888888887776665422 12223221 12234556789999999 788887664 455444 442 33344
Q ss_pred EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCe
Q 001160 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQ 996 (1134)
Q Consensus 917 ~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~ 996 (1134)
+. ......+..+++.++++.++ ++.+|.+++++.+.++.-. .+..+ .......+..+++.+++..++++.++.
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~ 271 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWG--ELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA 271 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEEC--CCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeE--eccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence 32 23456788999999987665 4557877777533233111 11111 000012478899999999888888887
Q ss_pred EEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 997 ISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 997 v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
|. +.. .++..........+...+.++.|.++++ +++++.+|.|.-++-
T Consensus 272 i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 272 LL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 73 333 3333332221112245678899986665 555668897776653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0028 Score=68.33 Aligned_cols=231 Identities=10% Similarity=-0.005 Sum_probs=142.7
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC---CeeeE-EecCCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA---GRKQY-TFEGHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~---~~~~~-~~~~h~~ 498 (1134)
|+.+.. ..|+..|+.+.+... .+ ........++|.+++.. ++++-..++.|..+++.. +.... .+...-.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 444433 458888988765432 22 23456789999987764 455566678999999875 12222 2332334
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
....+++.+.. +.+.++-...+.|.+.+++.................+++.|.+..|+.+.. ...+.|...++. |.
T Consensus 78 ~p~glavd~~~-~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~--~~~~~I~~~~~d-G~ 153 (316)
T 1ijq_A 78 APDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLN-GV 153 (316)
T ss_dssp CCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT-SC
T ss_pred CcCEEEEeecC-CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc--CCCCeEEEEcCC-CC
Confidence 55788886543 255566677889999998765444444444457789999997777766542 113678888875 33
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
....+....-...+.+++++++..|+.+. ..+.|..+|++...................+++. .+.++++-...+.|.
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 33333221222567899999887777655 5679999999754333333322222344677775 355555666678898
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
.++..++
T Consensus 233 ~~~~~~g 239 (316)
T 1ijq_A 233 SANRLTG 239 (316)
T ss_dssp EEETTTC
T ss_pred EEeCCCC
Confidence 8887666
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00016 Score=87.45 Aligned_cols=128 Identities=6% Similarity=-0.064 Sum_probs=76.8
Q ss_pred CCeEEEEECCCCeEEEEecCCC---------CceEEEEEcCCCCcEEEEEeCCC-----------cEEEEEcCCceEEEE
Q 001160 860 GGKVSLFNMMTFKVMTMFMSPP---------PAATFLAFHPQDNNIIAIGMEDS-----------SVQIYNVRVDEVKTK 919 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~---------~~i~~l~~s~~~~~~lasg~~dg-----------~i~iwd~~~~~~~~~ 919 (1134)
...+..||..+..-......+. ..-.++.|...++++++.|+.++ .|.+||..+.+-...
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred ccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 4568889988765433322111 12345555444788999998543 688888877654333
Q ss_pred e--cCcccce-EEEEEecCCCEEEEEcCC-----------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC
Q 001160 920 L--KGHQNRI-TGLAFSPTLNALVSSGAD-----------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 920 l--~~h~~~i-~~l~~s~d~~~l~s~~~D-----------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
. ..+..+. .+++..|++++++.+|.+ ..+.+||..+.+-.. +..... +........+.||
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~---~~~~~~---~R~~hs~a~ll~d 521 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSI---VRVYHSISLLLPD 521 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE---CCCCSS---CCCTTEEEEECTT
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee---cCCCCC---ccccccHhhcCCC
Confidence 2 2222222 344567899999999865 468999998765322 111110 1122345667899
Q ss_pred CcEEEEEE
Q 001160 986 QTHLLVVH 993 (1134)
Q Consensus 986 g~~l~~~~ 993 (1134)
|+.+++|+
T Consensus 522 g~v~v~GG 529 (656)
T 1k3i_A 522 GRVFNGGG 529 (656)
T ss_dssp SCEEEEEC
T ss_pred cEEEecCC
Confidence 99999865
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00076 Score=69.02 Aligned_cols=202 Identities=8% Similarity=0.057 Sum_probs=129.5
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.+.+..++|+|++..|+++...++.|...|.. ++.+.... +.+ ....-.|++.+++.++++
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEEE
Confidence 45799999999988788888888999999987 66544311 122 245778899999987777
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEe------cccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC-CCCeeeEEec----
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEID------AHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV-VAGRKQYTFE---- 494 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~------~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~-~~~~~~~~~~---- 494 (1134)
.-.++.+.++++.....+....... ........++|+|+++.++++.-..-..|+.|+- ..+..+..+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 6677899999987655322111211 2344578999999998533332222224555551 1111222221
Q ss_pred ---CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCC---------CcEEEEEECCCCCEEEEEeeC
Q 001160 495 ---GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG---------NWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 495 ---~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
.+-..+.+++++|.. +.+++.....+.+..+|... +.+..+.... .....++|.++|+..+++ .
T Consensus 167 ~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E- 242 (255)
T 3qqz_A 167 QRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-E- 242 (255)
T ss_dssp HHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-T-
T ss_pred ccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-C-
Confidence 133467899999875 47777777888899998764 3444333332 267899999999866664 2
Q ss_pred CCCCCcEEEEe
Q 001160 563 KEGESHLVEWN 573 (1134)
Q Consensus 563 ~~~~~~i~~wd 573 (1134)
.+.++.+.
T Consensus 243 ---~n~~y~f~ 250 (255)
T 3qqz_A 243 ---PNRFYRFT 250 (255)
T ss_dssp ---TTEEEEEE
T ss_pred ---CceEEEEE
Confidence 34566554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00015 Score=82.14 Aligned_cols=247 Identities=12% Similarity=0.075 Sum_probs=145.1
Q ss_pred ceEEEEecc-CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeC-CC----cEEEEEcCCc
Q 001160 842 SAACIALSK-NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGME-DS----SVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~-dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~-dg----~i~iwd~~~~ 914 (1134)
....++++| ++..|.++. .+.|+.+|+.+++...... .......++|++ ++++|.++.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457799998 466666666 5889999998766544433 455688999999 7885555544 22 3444443 33
Q ss_pred eEE--EEecCcccceEEEEEec-CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 915 EVK--TKLKGHQNRITGLAFSP-TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 915 ~~~--~~l~~h~~~i~~l~~s~-d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
... ..+.. .....+++++| ++.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 22221 23356788999 77777777778889999998755311 1111111 24689999999996666
Q ss_pred E--ECCeEEEEeCCCc--ce---eccCCC---CCC---------CCCeE-EEEEc--------cCCCEEEEEecCCcEEE
Q 001160 992 V--HESQISVYDSKLE--CS---RSWSPK---DAL---------PAPIS-SAIYS--------CDGLLVYAGFCDGAIGV 1043 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~--~~---~~~~~~---~~h---------~~~v~-~v~~s--------~dg~~l~~~~~dg~I~v 1043 (1134)
+ ..+.|..++.++. .+ ..+... .+. ...-. .++.. ++|.+.++-....+|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 4678999887321 11 111110 000 11122 45553 34565665556778999
Q ss_pred EeCCCcceeeecCCc-----ccccc--cccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecC
Q 001160 1044 FDAETLRFRCRIGPS-----AYIPT--YAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPS 1100 (1134)
Q Consensus 1044 wd~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~ 1100 (1134)
++ .+|......... .+... .....-..|..++++|+++.++++-...+.|+..++.
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 456443222110 00000 0001124688999998667777777777888887764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.18 E-value=0.001 Score=74.47 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=136.5
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCC----eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++.+..|...+ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 55688999999777777766 688999998752 223333334456788999874455555556678999999876
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEc-C-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-A-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........+|++.|.+..|.... . .+.|...+++...... .+. .+ ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~--~~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT--EN----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEE--CC----CCceEEEEEEeCCCEEEE
Confidence 554444443445578999999766665544 2 3678888887543211 111 11 134689999998888877
Q ss_pred E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+|+++.....+...........++++ ..+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 457899999976655554432222345567777 334556666677889999988887776654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0002 Score=87.89 Aligned_cols=200 Identities=6% Similarity=-0.049 Sum_probs=114.8
Q ss_pred cCCc-CeEEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-
Q 001160 406 DAAI-SVNRCVWG-PDGLMLGVAFS-K----HIVHLYTYNPT-GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD- 476 (1134)
Q Consensus 406 ~h~~-~V~~i~~s-pdg~~las~~~-d----g~i~iwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d- 476 (1134)
+|.. .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEECC
Confidence 4443 68899999 99999987643 2 35999999998 63321 1211 2457899999984 4444433
Q ss_pred ----CcEEEEECCCCee--eEEec-CCCCCeEEEEeeccCCccEEEEEec---CCeEEEEEccCCC-ce--eEe-cCCCC
Q 001160 477 ----KMIKVWDVVAGRK--QYTFE-GHEAPVYSVCPHHKESIQFIFSTAI---DGKIKAWLYDYLG-SR--VDY-DAPGN 542 (1134)
Q Consensus 477 ----~~i~iwd~~~~~~--~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~-~~--~~~-~~~~~ 542 (1134)
..|+++++.++.. ...+. ........+.|++++ ++|+..+. ...|.++|+.++. .. ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 3688899887642 22332 223445667787654 77766552 3468888888753 22 222 22334
Q ss_pred cEEEEEECCCCCEEEEEeeCC-CCCCcEEEEeCCCC-eeEE-EecCccCcceEEEEEeCCCCEEE-EEeCCCe--EEEEE
Q 001160 543 WCTMMAYSADGTRLFSCGTSK-EGESHLVEWNESEG-AIKR-TYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQ--IKFWD 616 (1134)
Q Consensus 543 ~v~~~~~s~~~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd 616 (1134)
...++.|+. |+.|+..+... .+...|..+++.++ .... .+....+..+..+.+. ++.|+ +...++. |++++
T Consensus 321 ~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 321 VRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEE
T ss_pred ceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEe
Confidence 445555433 66665554321 23557888887753 3222 2332222234445544 45554 4556675 45556
Q ss_pred C
Q 001160 617 M 617 (1134)
Q Consensus 617 ~ 617 (1134)
+
T Consensus 398 l 398 (751)
T 2xe4_A 398 A 398 (751)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0059 Score=68.22 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=147.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCC
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1134)
+|+.+ ....|+..++.+..... +......+..++|.+.+.. ++.+-...+.|+.+++... .....+....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEe-ccceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 44444 34678888988754322 2234567889999987764 4455556788999997652 2223333344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.....+++.+.. +.+.++-...+.|.+.+++.......+.........+++.|.+.+|+.... ...+.|...++...
T Consensus 159 ~~p~glavD~~~-~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~--~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETTT-TEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC--SSSCCEEEEETTSC
T ss_pred CCcccEEEEecC-CceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC--CCCCEEEEEeCCCC
Confidence 567788887643 256666667889999998866555555545556889999998777776532 12367888887643
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.........-. ..+.+++++++..|+.+. ..+.|..+|++...................+++. .+.++.+-...+.|
T Consensus 236 ~~~~~~~~~l~-~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred ccEEEEECCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 33222222222 577899999888777764 5678999998765544444432223344567663 34455555667888
Q ss_pred EEEECCCc
Q 001160 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
..++..++
T Consensus 314 ~~~~~~~G 321 (400)
T 3p5b_L 314 FSANRLTG 321 (400)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 88887666
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00067 Score=76.75 Aligned_cols=246 Identities=10% Similarity=0.065 Sum_probs=137.0
Q ss_pred ceEEEEEec-CCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 774 KVVRLIYTN-SGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 774 ~v~~~~~s~-~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
....++++| ++..|+++...+.|+.+++.. +.+... ... ......++++++|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~----------------------~~v~~~-~~~----~~~P~~ia~d~~G 190 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK----------------------EYVSTV-YSG----LSKVRTICWTHEA 190 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT----------------------TEEEEE-ECC----CSCEEEEEECTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC----------------------CEEEEE-ecC----CCCcceEEEeCCC
Confidence 446889997 455566665546677666432 211110 111 4557899999999
Q ss_pred CEEEEEe--CC----eEEEEECCCC-eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec-Ccc
Q 001160 853 SYVMSAS--GG----KVSLFNMMTF-KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-GHQ 924 (1134)
Q Consensus 853 ~~la~~s--dg----~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~-~h~ 924 (1134)
++|.++. ++ .+.+++.... .....+. .......++++|+++.++++-..++.|+.++..++....... +..
T Consensus 191 ~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 191 DSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp SEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 9666665 22 2444443321 1112222 123456788999566666666677899999998776422222 122
Q ss_pred cceEEEEEecCCC-EEEEEcCCCcEEEEeCCCc--ccccceeeecC---CCCC------CCCcCce-EEEEC--------
Q 001160 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKW--EKLKSRFIQAP---AGRQ------SPLVGET-KVQFH-------- 983 (1134)
Q Consensus 925 ~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~~--~~~~~~~~~~~---~~~~------~~~~~v~-~~~fs-------- 983 (1134)
..-..|+|+|+++ ++++-...+.|..++.+.. +......+... .+.. ....... .++..
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D 349 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS 349 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence 3467899999999 4555556788999877642 21111111111 1110 0011233 45553
Q ss_pred CCCcEEEE-EECCeEEEEeCCCcceeccCC----C----C------CCCCCeEEEEEccC-CCEEEEEecCCcEEEEeCC
Q 001160 984 NDQTHLLV-VHESQISVYDSKLECSRSWSP----K----D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAE 1047 (1134)
Q Consensus 984 pdg~~l~~-~~d~~v~vwd~~~~~~~~~~~----~----~------~h~~~v~~v~~s~d-g~~l~~~~~dg~I~vwd~~ 1047 (1134)
++|.++++ ...+.|+.++.++......-. . + +.-..-..|+++++ +.++++-..+..|+.++++
T Consensus 350 ~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 350 DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 44666666 456789999875533222111 0 0 01235789999995 6555555566778887754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00098 Score=75.13 Aligned_cols=253 Identities=7% Similarity=-0.018 Sum_probs=149.7
Q ss_pred ceEEEEecc-CCCEEEEEe--CCeEEEEECCCCeEEEEecCC---CCceEEEEE-------cCCCCcEEEEEeCCC----
Q 001160 842 SAACIALSK-NDSYVMSAS--GGKVSLFNMMTFKVMTMFMSP---PPAATFLAF-------HPQDNNIIAIGMEDS---- 904 (1134)
Q Consensus 842 ~i~~~~~s~-dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~lasg~~dg---- 904 (1134)
....|+|+| ++..|.++. .+.|++.|++++......... ......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 367999999887766554432 235899999 99 777666565543
Q ss_pred ---cEEEEEcCC-ceEE-----EEecCcccceEEEEEecC-CCEEEEEcCCCcEEEEeCC-------Cccc------c--
Q 001160 905 ---SVQIYNVRV-DEVK-----TKLKGHQNRITGLAFSPT-LNALVSSGADAQLCMWSID-------KWEK------L-- 959 (1134)
Q Consensus 905 ---~i~iwd~~~-~~~~-----~~l~~h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~-------~~~~------~-- 959 (1134)
.|.+.+... ++.. ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665333 2221 122211 22357788994 5556667778889999998 4443 0
Q ss_pred --cceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeCCC--cce---eccCC---CCCC---------CC
Q 001160 960 --KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKL--ECS---RSWSP---KDAL---------PA 1018 (1134)
Q Consensus 960 --~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~--~~~---~~~~~---~~~h---------~~ 1018 (1134)
...+.....+ .....++|+|+|++|.++ ..+.|+.++..+ ..+ ..+.. ..++ ..
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0011222111 245799999999965554 567888866622 221 11111 1111 12
Q ss_pred CeE-EEEEc-------cCCCEEEEEecCCcEEEEeCCCcceeeecCCccc------------cc--ccccCCCCccEEEe
Q 001160 1019 PIS-SAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY------------IP--TYAVSNTAHPLVIA 1076 (1134)
Q Consensus 1019 ~v~-~v~~s-------~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~------------~~--~~~~~~~~~~~~~~ 1076 (1134)
.-. .++.. ++|.+.++=....+|+.++ .+|. +.++..... .. ......-..|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 334 45554 4566666666778899999 4563 444432210 00 00111235688999
Q ss_pred ecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1077 PHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
+++.+++++++-...+.|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998547888887788899999986544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00046 Score=78.04 Aligned_cols=245 Identities=11% Similarity=0.120 Sum_probs=137.3
Q ss_pred ceEEEEEecC--CcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccC
Q 001160 774 KVVRLIYTNS--GLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851 (1134)
Q Consensus 774 ~v~~~~~s~~--g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~d 851 (1134)
....+++.|+ +..|+.+...+.|+.++. .++..... ... ......++++++
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~----------------------~~g~v~~~-~~~----~~~P~giavd~d 192 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF----------------------VNQYVDIK-TTN----IGQCADVNFTLN 192 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET----------------------TTTEEEEE-CCC----CSCEEEEEECTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC----------------------CCCEEEEe-ecC----CCCccEEEECCC
Confidence 3468899984 333544443366666654 22322221 111 455789999999
Q ss_pred CCEEEEEeCC-----eEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe-c-Cc
Q 001160 852 DSYVMSASGG-----KVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL-K-GH 923 (1134)
Q Consensus 852 g~~la~~sdg-----~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l-~-~h 923 (1134)
|+++++...+ .+...+...+.. ...+. .-.....++++|+++.+.++-..++.|+.+|..+++....+ . +.
T Consensus 193 G~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 193 GDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp CCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred CCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 9944444322 233333322111 01111 22345678899855666655556788999998877653332 2 11
Q ss_pred ccceEEEEEecCCC-EEEEEcCCCcEEEEeCCC--cccccceeeecC---CCCC------CCCcCceEEEE---------
Q 001160 924 QNRITGLAFSPTLN-ALVSSGADAQLCMWSIDK--WEKLKSRFIQAP---AGRQ------SPLVGETKVQF--------- 982 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~-~l~s~~~D~~i~iWd~~~--~~~~~~~~~~~~---~~~~------~~~~~v~~~~f--------- 982 (1134)
...-..|+|+|+++ +.++-...+.|+.++.+. +.......+... .+.. ........+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 22234799999998 445555678899887653 321111111111 1110 01134678999
Q ss_pred CCCCcEEEE-EECCeEEEEeCCCcceeccCCC---------------CCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEe
Q 001160 983 HNDQTHLLV-VHESQISVYDSKLECSRSWSPK---------------DALPAPISSAIYS-CDGLLVYAGFCDGAIGVFD 1045 (1134)
Q Consensus 983 spdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~---------------~~h~~~v~~v~~s-~dg~~l~~~~~dg~I~vwd 1045 (1134)
.++|.++++ ...+.|+.++.++.. ..+... ......-..|+++ ++|.++++-..+..|+.++
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTPEGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECTTSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCcEEEEECCCCEEEEECCCCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 777777777 456789999875533 222111 0012346789999 6677666666677888887
Q ss_pred CC
Q 001160 1046 AE 1047 (1134)
Q Consensus 1046 ~~ 1047 (1134)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0021 Score=69.14 Aligned_cols=205 Identities=9% Similarity=0.003 Sum_probs=132.7
Q ss_pred CceEEEEeccCCCEEEEEe--CCeEEEEECCCCeE-EEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKV-MTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
.....++|++.+..|.... .+.|..+++..... ...+.........+++.+.++++..+-...+.|.+++++.....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 4467889998767666665 68899999876532 11222223456789998745566666566789999998754333
Q ss_pred EEecCcccceEEEEEecCCCEEEEEc--CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSG--ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H 993 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~--~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~ 993 (1134)
..+........++++.|.+..|..+. ..+.|...+++.... . ..+.. + ......++|+|++..|..+ .
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~-~~~~~--~----l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F-IIINS--E----IYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E-EEECS--S----CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E-EEEEC--C----CCCccEEEEeccCCEEEEEECC
Confidence 33334445678999998766555554 356788888765321 1 11111 1 1346899999988777775 4
Q ss_pred CCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 994 ESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 994 d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
.+.|..+|+.+.....+... ......++++.. +.++++-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67899999966554444321 144567788753 4555666677889999998888766654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.021 Score=61.26 Aligned_cols=232 Identities=9% Similarity=0.014 Sum_probs=141.7
Q ss_pred CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCcccee
Q 001160 368 VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYNPTGELRQH 446 (1134)
Q Consensus 368 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~~~~~~~~~ 446 (1134)
...|+..++.+...... . +......+..++|.+.+..|. +-...+.|..++.+++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~--~----------------~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--I----------------VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCE--E----------------EEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEE--E----------------EecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 56888899876531111 0 111223467899998655554 445678899999887642211
Q ss_pred eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe--cCCeEE
Q 001160 447 LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA--IDGKIK 524 (1134)
Q Consensus 447 ~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~d~~i~ 524 (1134)
.+...-.....+++.+.+.. +.++-...+.|.++++........+.........+++.|.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345678999986664 45555667899999976433222233444567889998754 3444444 357888
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
..+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+... ....+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEEeC-CEEEE
Confidence 8887754443333334456789999998888887643 467899999864332222222222 455666653 34444
Q ss_pred EEeCCCeEEEEECCCCeeEEEEe
Q 001160 605 AAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 55567888888887777665554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0042 Score=69.99 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=141.6
Q ss_pred ceEEEEEec-CCcceEEeec-cCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEe---
Q 001160 774 KVVRLIYTN-SGLSLLALAS-NAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIAL--- 848 (1134)
Q Consensus 774 ~v~~~~~s~-~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~--- 848 (1134)
....++|.| +...|+++.. .+.|++.|+.. +.+....-.+... ......++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~-~~~p~~ia~~~~ 196 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIP-TNRIRSIAFNKK 196 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSS-CSBEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccc-cCCCcEEEEeec
Confidence 456899998 3554555544 45666665432 2211110000001 345789999
Q ss_pred ----ccCCCEEEEEe-CC-------eEEEEECCC-Ce--------EEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEE
Q 001160 849 ----SKNDSYVMSAS-GG-------KVSLFNMMT-FK--------VMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQ 907 (1134)
Q Consensus 849 ----s~dg~~la~~s-dg-------~i~vwd~~~-~~--------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~ 907 (1134)
+++|+.|.++. .+ .|.+++... +. .+..+. ....++++|+++.++++-..++.|+
T Consensus 197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~ 272 (496)
T 3kya_A 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVF 272 (496)
T ss_dssp BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCCCeEEEEECCCCEEE
Confidence 99999777776 32 266665443 11 222222 3457789995666666666788999
Q ss_pred EEEcC-------CceE-----------EEE-ec-CcccceEEEEEecCCCE-EEEEcCCCcEEEEeCCC--cccccc-ee
Q 001160 908 IYNVR-------VDEV-----------KTK-LK-GHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDK--WEKLKS-RF 963 (1134)
Q Consensus 908 iwd~~-------~~~~-----------~~~-l~-~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~--~~~~~~-~~ 963 (1134)
.+|+. ++.. ... +. +....-+.|+|+|+|++ .++-...+.|+.++... +..... .+
T Consensus 273 r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~ 352 (496)
T 3kya_A 273 RLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNF 352 (496)
T ss_dssp EECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEE
T ss_pred EEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEe
Confidence 99997 5543 112 11 22334579999999995 45555677888866543 221000 11
Q ss_pred eec--CCCCC------CCCcCce-EEEEC-------CCCcEEEE-EECCeEEEEeCCCcceeccCCC-------------
Q 001160 964 IQA--PAGRQ------SPLVGET-KVQFH-------NDQTHLLV-VHESQISVYDSKLECSRSWSPK------------- 1013 (1134)
Q Consensus 964 ~~~--~~~~~------~~~~~v~-~~~fs-------pdg~~l~~-~~d~~v~vwd~~~~~~~~~~~~------------- 1013 (1134)
... ..+.. ....... .++.. ++|.++++ ..+++|+.++.++. +..+...
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCC
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccc
Confidence 111 11111 0112344 44554 56666666 46789999997553 3332211
Q ss_pred --C------CCCCCeEEEEEccC-CCEEEEEecCCcEEEEeCCCcceeee
Q 001160 1014 --D------ALPAPISSAIYSCD-GLLVYAGFCDGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 1014 --~------~h~~~v~~v~~s~d-g~~l~~~~~dg~I~vwd~~~~~~~~~ 1054 (1134)
+ +.-..-..|+++++ |.+.++=..+..|+.++++....+..
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 0 11245678999997 77666666678899999887655543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0078 Score=72.91 Aligned_cols=208 Identities=11% Similarity=-0.009 Sum_probs=132.0
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCC----eEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTF----KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~ 913 (1134)
...+..++|++.+..|.... .+.|+.+++... .....+.........|++.+.++++.++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 45678899999777666665 688999998753 223333334456778999984445666666778999999876
Q ss_pred ceEEEEecCcccceEEEEEecCCCEEEEEc-CC-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSG-AD-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 914 ~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~-~D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
......+........+|++.|.+..|..+. .. +.|...+++..... . ++. .+ ......|++.+.+..|+.
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~-lv~--~~----l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S-LVT--EN----IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E-EEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-E-EEe--CC----CCCceEEEEecCCCeEEE
Confidence 544333444445678999999866555554 22 67888888754321 1 111 11 135789999988877777
Q ss_pred E--ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 992 V--HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~--~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+ ..+.|..+++.+.....+....+......+|++.. +++.++-...+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 45689999997666555543222233455677633 3444555566889889888886665553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=87.99 Aligned_cols=208 Identities=11% Similarity=-0.014 Sum_probs=127.5
Q ss_pred CceEEEEeccCCCEEEEEe--CCeEEEEECCC----CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001160 841 ESAACIALSKNDSYVMSAS--GGKVSLFNMMT----FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
..+..++|++++..|..+. .+.|..+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999888777775 57899999875 22222222122345678888635666665556789999998765
Q ss_pred eEEEEecCcccceEEEEEecCCCEEEEEcC-C-CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE
Q 001160 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGA-D-AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 915 ~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D-~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
.....+.........|++.|++.+|+.+.. . +.|...++..... . .++.. . ......++|+|++..|+.+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~-~l~~~-~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y-SLVTE-N-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C-EESCS-S-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e-EEEeC-C-----CCCccEEEEeccCCEEEEE
Confidence 433333333345678899987655554432 2 6787777764321 1 11111 1 1346789999987766664
Q ss_pred --ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCC
Q 001160 993 --HESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 993 --~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
..+.|.++++.+.....+...........+|++..+ .++++....+.|..++..+|+.+..+..
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 457899999966544444332111223345565443 4555556678999999999988877753
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.024 Score=68.69 Aligned_cols=232 Identities=9% Similarity=0.002 Sum_probs=143.9
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCC----eeeEEecCCC
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAG----RKQYTFEGHE 497 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~----~~~~~~~~h~ 497 (1134)
+|+.+ ....|+..++...... .+......+..|+|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 44443 3445788888765432 22334556789999986664 4555666788999998652 2233343344
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCC
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~ 577 (1134)
.....|++.+.. +.++++-...+.|.+.+++.......+.........|++.|.+.+|+.... .....|...++...
T Consensus 471 ~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~--g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSC
T ss_pred CCcceeeeeecC-CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecC--CCCCeEEEEecCCC
Confidence 566788887654 256666677889999999866555555545557889999998777776532 11367888887644
Q ss_pred eeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcE
Q 001160 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGI 656 (1134)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 656 (1134)
.....+..... ..+.|++++.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|
T Consensus 548 ~~~~lv~~~l~-~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 548 DIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CEEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred ceEEEEeCCCC-CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 43333332222 678899998877777764 56789999997655555554333233345666532 2334444456778
Q ss_pred EEEECCCc
Q 001160 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
...+..++
T Consensus 626 ~~~dk~tG 633 (791)
T 3m0c_C 626 FSANRLTG 633 (791)
T ss_dssp EEEETTTC
T ss_pred EEEeCCCC
Confidence 87776666
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0091 Score=63.31 Aligned_cols=186 Identities=12% Similarity=0.116 Sum_probs=118.8
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC--Ccc---EEEEEe-c--CCeEEEEEccCCC-ceeEecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE--SIQ---FIFSTA-I--DGKIKAWLYDYLG-SRVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~~---~l~s~~-~--d~~i~~wd~~~~~-~~~~~~~ 539 (1134)
+++.....+-+.++|+ +|+.+..+.. +.++.+.+-|.- .|. ++++.. . +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4565666788999998 9999988864 567777665521 111 233333 3 5789999874222 2333311
Q ss_pred ------CC-CcEEEEEE--CCC-CCEEEEEeeCCCCCCcEEEEeC-------CCCeeEEEecCccCcceEEEEEeCCCCE
Q 001160 540 ------PG-NWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNE-------SEGAIKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 540 ------~~-~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
.. ..+..+++ +|. +++.+..+ ++++.+..|++ .+.+.++++.... .+..+...+...+
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~---~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVT---GKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEE---CCCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45667777 775 44333333 23678888888 2346778887654 5777889998899
Q ss_pred EEEEeCCCeEEEEECC-----CCeeEEEEeCCCCCCCcceEEE--ccCCC-EEEEEe-CCCcEEEEECC
Q 001160 603 FLAAGDEFQIKFWDMD-----NMNMLTTVDADGGLPASPRLRF--NKEGS-LLAVTT-SDNGIKILANS 662 (1134)
Q Consensus 603 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~d~~-~l~~~~-~dg~i~iw~~~ 662 (1134)
|+.+-++..|..++.+ +++.+..+....-...+..|++ .++++ +|++++ .++++.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777755 3445554432222235677777 45666 666665 46799999986
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0093 Score=62.63 Aligned_cols=203 Identities=11% Similarity=0.068 Sum_probs=125.1
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEE-ecCC----C--CceEEEEE---cCCCCcEEEEEeC-------
Q 001160 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTM-FMSP----P--PAATFLAF---HPQDNNIIAIGME------- 902 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~-~~~~----~--~~i~~l~~---s~~~~~~lasg~~------- 902 (1134)
...+++|.+....+..++ .++|..||...+..... +.+- . ..+..|.| .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345688988666666666 89999999986644333 3321 1 13678999 68 6888876442
Q ss_pred ------CCcEEEEEcC---CceEEEEec--Ccc-----------cceEEEEEecCCCEEEEEcCC-CcEEEEeCCCcccc
Q 001160 903 ------DSSVQIYNVR---VDEVKTKLK--GHQ-----------NRITGLAFSPTLNALVSSGAD-AQLCMWSIDKWEKL 959 (1134)
Q Consensus 903 ------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~i~~l~~s~d~~~l~s~~~D-~~i~iWd~~~~~~~ 959 (1134)
+..|..||+. +++.+.... ... .....++..++|+..++++.- +.|...+.+.. ..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TV 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EE
Confidence 6789999999 777665432 221 247899999999999988877 77666665543 22
Q ss_pred cceeeecCCCCCCCCcCceEEEECCCCcEEEEE-ECCeEEEEeCCC-cc--eeccC-CCCCCCCCeEEE-EEccCCCE-E
Q 001160 960 KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYDSKL-EC--SRSWS-PKDALPAPISSA-IYSCDGLL-V 1032 (1134)
Q Consensus 960 ~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~d~~v~vwd~~~-~~--~~~~~-~~~~h~~~v~~v-~~s~dg~~-l 1032 (1134)
....+..+.... ....+.++++|||+.|++. ..+.+..+|++. .. +..-. ...+.......+ ..-.+|+. |
T Consensus 172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 222222222221 1457899999999988883 488899999842 11 11100 100112234443 33357887 5
Q ss_pred EEEecCCcEEEEeCCC
Q 001160 1033 YAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1033 ~~~~~dg~I~vwd~~~ 1048 (1134)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566666655443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.014 Score=61.83 Aligned_cols=196 Identities=10% Similarity=0.193 Sum_probs=120.9
Q ss_pred CCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCC---CCc---EEEEEe-C--CCcEEEEEcC--CceEEE
Q 001160 851 NDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ---DNN---IIAIGM-E--DSSVQIYNVR--VDEVKT 918 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~---~lasg~-~--dg~i~iwd~~--~~~~~~ 918 (1134)
...+++... .+.+.+||+ +++.+..+.. +.++.+..-|. +++ ++++.. . +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 444544444 788999999 7888888863 56666666551 122 223333 3 5789999773 443 44
Q ss_pred EecC------cc-cceEEEEE--ecC-CC-EEEEEcCCCcEEEEeCCC---cccccceeeecCCCCCCCCcCceEEEECC
Q 001160 919 KLKG------HQ-NRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDK---WEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 919 ~l~~------h~-~~i~~l~~--s~d-~~-~l~s~~~D~~i~iWd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
.+.. .. ..+..+++ +|. ++ +++....++.+..|++.. +. .....++...-. ..+-.|+..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~-~~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGY-ISGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSC-EEEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCc-ccceEEEEecCC----CCcceEEEcC
Confidence 4421 11 55677888 774 44 677788889999999843 21 222233332211 3577889998
Q ss_pred CCcEEEEEE-CCeEEEEeCC------CcceeccCCCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCcEEEEeCC-Cccee
Q 001160 985 DQTHLLVVH-ESQISVYDSK------LECSRSWSPKDALPAPISSAIY--SCDGL-LVYAGF-CDGAIGVFDAE-TLRFR 1052 (1134)
Q Consensus 985 dg~~l~~~~-d~~v~vwd~~------~~~~~~~~~~~~h~~~v~~v~~--s~dg~-~l~~~~-~dg~I~vwd~~-~~~~~ 1052 (1134)
...+|.++. +..|..|+.+ ...+..+. ...-...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 888888865 4556666653 12232221 2122347888888 56666 666666 56799999997 67777
Q ss_pred eecC
Q 001160 1053 CRIG 1056 (1134)
Q Consensus 1053 ~~~~ 1056 (1134)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00044 Score=83.38 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=131.1
Q ss_pred EEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCC----ceEEEEecCcccceEEEE
Q 001160 857 SASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV----DEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 857 ~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~----~~~~~~l~~h~~~i~~l~ 931 (1134)
.+..+.|+..++.+.+....+. ....+..++|++ .+..|..+ ...+.|+.+++.+ ......+.........|+
T Consensus 382 ~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 382 FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp CCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ecCccceEEEeCCCCcceeeec-cCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3345678888887765544433 234567899998 44444444 4568899999875 222222222223356788
Q ss_pred EecC-CCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--E-CCeEEEEeCCCcce
Q 001160 932 FSPT-LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--H-ESQISVYDSKLECS 1007 (1134)
Q Consensus 932 ~s~d-~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~-d~~v~vwd~~~~~~ 1007 (1134)
+.+. ++++++-...+.|.+.++....... ++. .+. .....+++.|++.+|+.+ . .+.|.++++.+...
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~--~~~----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR--EQG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECC--CSS----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEE--EEe--CCC----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 8754 4555555567889999987643211 111 111 245789999977666653 2 26788888865544
Q ss_pred eccCCCCCCCCCeEEEEEccCCCEEE-EEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1008 RSWSPKDALPAPISSAIYSCDGLLVY-AGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1008 ~~~~~~~~h~~~v~~v~~s~dg~~l~-~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
..+.... ......|+|+|++..|+ +-+..+.|.++++..... ..+.... ....++.++++.. +.+++
T Consensus 532 ~~l~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~-------~~~~~P~glavd~--~~lyw 599 (699)
T 1n7d_A 532 YSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE-------KRLAHPFSLAVFE--DKVFW 599 (699)
T ss_dssp CEESCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCS-------SSCSSCCCCEEET--TEEEE
T ss_pred eEEEeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecC-------CcCCCceEeEEEC--CEEEE
Confidence 3332211 34456899999866554 444567899999975332 2221110 1113445555544 35777
Q ss_pred EEeCCCcEEEEecCCCc
Q 001160 1087 LGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~~~~~ 1103 (1134)
+....+.|..++..+++
T Consensus 600 td~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 600 TDIINEAIFSANRLTGS 616 (699)
T ss_dssp ECSTTTCEEEEETTTEE
T ss_pred EeCCCCeEEEEEccCCC
Confidence 77777899999876665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.033 Score=60.86 Aligned_cols=230 Identities=14% Similarity=0.105 Sum_probs=123.2
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEECCCCeE--EEEec---CCCCceEEEEEcCCC----CcEEEEEeCC-----CcE
Q 001160 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKV--MTMFM---SPPPAATFLAFHPQD----NNIIAIGMED-----SSV 906 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~----~~~lasg~~d-----g~i 906 (1134)
.....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence 346789999999966665589999998 4432 22222 1234678999999 5 4444444332 678
Q ss_pred EEEEcCCce-----E-EEEec---CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccc-----
Q 001160 907 QIYNVRVDE-----V-KTKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL----- 959 (1134)
Q Consensus 907 ~iwd~~~~~-----~-~~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~----- 959 (1134)
..|+...+. . +..+. +.......|+|.|||.+.++.+.. +.|.-++.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCcc
Confidence 888876431 1 22233 111123589999999877775432 3454454442 100
Q ss_pred ------cceeeecCCCCCCCCcCceEEEECC-CCcEEEEE-ECCe--------EEEEeCCCcc---------------ee
Q 001160 960 ------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV-HESQ--------ISVYDSKLEC---------------SR 1008 (1134)
Q Consensus 960 ------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~-~d~~--------v~vwd~~~~~---------------~~ 1008 (1134)
..... ..++ .....++|+| +|.++++- ..+. |.+... +.. ..
T Consensus 187 ~~~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 187 LGRRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp TTCTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCCTTSCC
T ss_pred cCCCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCCCCCcC
Confidence 00000 0111 2357889999 67766662 2222 433322 110 00
Q ss_pred ccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeec-CCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1009 SWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1009 ~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
..... .+......++| .+|.++++....+.|...+++........ ....+. .....+..+++.| ||.++++
T Consensus 260 p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-----~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 260 PLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-----SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp CSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-----ESSCCEEEEEECT-TSCEEEE
T ss_pred CeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-----ccCCCeeEEEECC-CCcEEEE
Confidence 00000 11234567888 67777776666777888877654321000 000111 1124678899998 6777776
Q ss_pred Ee
Q 001160 1088 GM 1089 (1134)
Q Consensus 1088 ~~ 1089 (1134)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.19 Score=54.26 Aligned_cols=259 Identities=9% Similarity=0.077 Sum_probs=158.0
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..++.+.|+.++..+.+..-..+ +.-++|..+.++.-. ...+.++|+++...+....... .|.--.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC-C
Confidence 44789999988665543333222 345789888777754 7899999999999999888654 3444555443 4
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCcc
Q 001160 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1134)
.|+..+. ..|+-|++.......+.+..|...
T Consensus 118 ~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEcC-CeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 5665554 489999986543333333332210
Q ss_pred CCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec-------cCeeEE
Q 001160 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 798 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~v 798 (1134)
....|.....+++.++++..|- .|.+.+
T Consensus 149 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 183 (494)
T 1bpo_A 149 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (494)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence 1234555556666666554332 366777
Q ss_pred eecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC-----CEEEEEe----CCeEEEEECC
Q 001160 799 WKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND-----SYVMSAS----GGKVSLFNMM 869 (1134)
Q Consensus 799 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg-----~~la~~s----dg~i~vwd~~ 869 (1134)
|..+.... ..+.+ | ......+. .+| ..++.+. .++++|.++.
T Consensus 184 YS~er~~s------------------------Q~ieG--h-aa~F~~~~--~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~ 234 (494)
T 1bpo_A 184 YSVDRKVS------------------------QPIEG--H-AASFAQFK--MEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (494)
T ss_dssp EESTTCCE------------------------EEECC--S-EEEEEEEE--CTTCSSEEEEEEEEECSTTCCEEEEEECS
T ss_pred eecccccc------------------------chhee--e-eeeeEEEe--cCCCCCCceEEEEEEecCCCcEEEEEEcC
Confidence 76543111 11222 3 21111111 122 2344443 3789999985
Q ss_pred CC--------eEEEEe-cC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCC
Q 001160 870 TF--------KVMTMF-MS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLN 937 (1134)
Q Consensus 870 ~~--------~~~~~~-~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~ 937 (1134)
.. +....+ -. ..+--.++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|..-+...+..
T Consensus 235 ~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATA 313 (494)
T ss_dssp CCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred CCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCC
Confidence 42 111111 11 123356888888 677888899999999999999999988776677777766666666
Q ss_pred EEEEEcCCCcEEEEeCCCcc
Q 001160 938 ALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 938 ~l~s~~~D~~i~iWd~~~~~ 957 (1134)
=++.....|.|.--.++...
T Consensus 314 Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 314 GIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTCEEEEEEECTTT
T ss_pred cEEEEccCceEEEEEEcccc
Confidence 66777788877776666544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.22 Score=53.86 Aligned_cols=234 Identities=17% Similarity=0.159 Sum_probs=151.6
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001160 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
-+.-.+|..+.+|.-...++.|||+++.+.+..+.-. ..|.-=.|-. .+.|+..+ +..|+-|++... .+.+.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 4567788889888888899999999999888887743 3565556653 34666554 568999999743 56666665
Q ss_pred cc----cceEEEEEecCCCEEEEEcC-------CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC-----
Q 001160 923 HQ----NRITGLAFSPTLNALVSSGA-------DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----- 986 (1134)
Q Consensus 923 h~----~~i~~l~~s~d~~~l~s~~~-------D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg----- 986 (1134)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 54 35777888999998886552 3678899888754 233445431 112222222
Q ss_pred cEEEEEE----CCeEEEEeC-CC---c------ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001160 987 THLLVVH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1134)
Q Consensus 987 ~~l~~~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~ 1052 (1134)
..++.+. .+++.+.++ .. . ....+.+.+.-.+--.++..|+.-..++..+.-|.|+++|++||.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2233332 267888887 21 1 11112222333555678889998888888999999999999999999
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
..-+.. . ......+.+. ...=++.....|.|.--.+++..
T Consensus 294 ~~nrIs---------~-~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNRIS---------G-ETIFVTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEECC---------S-SCEEEEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeeccc---------C-CceEEecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 765522 1 2222333333 23456666688888777766544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.05 Score=59.35 Aligned_cols=231 Identities=11% Similarity=0.075 Sum_probs=126.9
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEECCCCe-EEEEec---CCCCceEEEEEcCC---CCcEEEEEeC---C----CcE
Q 001160 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFK-VMTMFM---SPPPAATFLAFHPQ---DNNIIAIGME---D----SSV 906 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~lasg~~---d----g~i 906 (1134)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........|+|+|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3468899999998666655899999974 454 222221 12345789999993 2555444332 3 567
Q ss_pred EEEEcCCc-------eEE-EEec---CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCcccc---
Q 001160 907 QIYNVRVD-------EVK-TKLK---GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKWEKL--- 959 (1134)
Q Consensus 907 ~iwd~~~~-------~~~-~~l~---~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~~~~--- 959 (1134)
..|+...+ +.+ ..+. .|. ...|+|.|||.+.++.+.. +.|.-.+.+. +..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 77776643 111 1222 232 3579999999987775432 3344444432 100
Q ss_pred ---cceeeecCCCCCCCCcCceEEEECC-CCcEEEEE--ECC--eEEEEeCCCcc---------------eeccCCCCCC
Q 001160 960 ---KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVV--HES--QISVYDSKLEC---------------SRSWSPKDAL 1016 (1134)
Q Consensus 960 ---~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~--~v~vwd~~~~~---------------~~~~~~~~~h 1016 (1134)
...+. ..++ .....++|+| +|+++++- .++ .|.+... +.. ..........
T Consensus 185 pf~~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 257 (354)
T 3a9g_A 185 PFPNSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSE 257 (354)
T ss_dssp SSTTCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCC
Confidence 00011 0112 2457899999 67766662 221 2443332 110 0000000001
Q ss_pred CCCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEe
Q 001160 1017 PAPISSAIYS-------CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM 1089 (1134)
Q Consensus 1017 ~~~v~~v~~s-------~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~ 1089 (1134)
......++|. .+|.++++....+.|...++.....+.... .... +....+..+++.| ||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~----~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFK----NVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECT----TTSCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eecc----CCCCCeeEEEECC-CCcEEEEEe
Confidence 3467888883 678777777777889988887532221100 0110 1124678899999 777777764
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=57.87 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.3
Q ss_pred CCcchHHHHHHHHHhhhhcchHHHHHHHHHhcCCCc
Q 001160 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1134)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~ 36 (1134)
|+..+.||..||..||+|.||..||.+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 888999999999999999999999999999999864
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00057 Score=63.54 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+|+.|.|||||..|+..+|..||++.-..++..+.+.+++|+.+....++.+++....++. .+.+
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s 126 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 126 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHH
Confidence 3444 9999999999999999999999999998877777778899999999999988888887777755 3555
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 127 ~~lL~~fL~~ 136 (156)
T 2nxp_A 127 YQLLKRHLQE 136 (156)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 5777777776
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.034 Score=59.96 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=117.5
Q ss_pred cCeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCccceeeEEec-----ccCCeeEEEEec--CCCcEE
Q 001160 409 ISVNRCVWGPDGLMLGVAF------------SKHIVHLYTYNPTGELRQHLEIDA-----HVGGVNDIAFAH--PNKQLC 469 (1134)
Q Consensus 409 ~~V~~i~~spdg~~las~~------------~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~l~~s~--d~~~~~ 469 (1134)
...-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3456677889886666652 689999999974321111113333 233566777766 454323
Q ss_pred EEEEcC--CCcEEEEECCCC--e--eeEEecCC-CCCeEEEEeeccCCccEEEEEec-----------------CCeEEE
Q 001160 470 IVTCGD--DKMIKVWDVVAG--R--KQYTFEGH-EAPVYSVCPHHKESIQFIFSTAI-----------------DGKIKA 525 (1134)
Q Consensus 470 l~sg~~--d~~i~iwd~~~~--~--~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~-----------------d~~i~~ 525 (1134)
+++-.. +.+|.+|++..+ . .+.++.+. -...+.+.+.++ |.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~--G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCC--CCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333333 567888877643 2 22344432 235678888664 366665431 234444
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCC-Cee--EEEecCccCcceEEEEEeC-CCC
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESE-GAI--KRTYSGFRKRSLGVVQFDT-TRN 601 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 601 (1134)
+|. .+.. .+...-...+.++|+||++.++.+.. ..+.|..|++.. ++. .+.+.. ......+++.+ +|+
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 443 3222 22222335688999999999887754 356799999863 332 223321 23567789999 598
Q ss_pred EEEEEeCC-CeEEEEECC--CCeeEEEEe
Q 001160 602 RFLAAGDE-FQIKFWDMD--NMNMLTTVD 627 (1134)
Q Consensus 602 ~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 627 (1134)
..+++..+ +.|..|+.. .+..+..+.
T Consensus 280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 88866533 344445544 244444444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0049 Score=64.71 Aligned_cols=166 Identities=9% Similarity=0.110 Sum_probs=110.3
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE-ecC----cc--cceEEEEE---ecCCCEEEEEc-------
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK-LKG----HQ--NRITGLAF---SPTLNALVSSG------- 943 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~-l~~----h~--~~i~~l~~---s~d~~~l~s~~------- 943 (1134)
..---+++|++.++.++++.-..++|..||...+..... +.+ .. ..+.+|.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334457889875566666555899999999876643333 332 11 13579999 68888777543
Q ss_pred ------CCCcEEEEeCC---CcccccceeeecCC-------CCCCCCcCceEEEECCCCcEEEE-EEC-CeEEEEeCCCc
Q 001160 944 ------ADAQLCMWSID---KWEKLKSRFIQAPA-------GRQSPLVGETKVQFHNDQTHLLV-VHE-SQISVYDSKLE 1005 (1134)
Q Consensus 944 ------~D~~i~iWd~~---~~~~~~~~~~~~~~-------~~~~~~~~v~~~~fspdg~~l~~-~~d-~~v~vwd~~~~ 1005 (1134)
.+..|..+|+. +++.....-+.... +.. ......++..++|+..++ +.. +.|...+..++
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999999 77654322221110 001 124689999999998888 566 77877777666
Q ss_pred ceeccCCC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001160 1006 CSRSWSPK---DALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAET 1048 (1134)
Q Consensus 1006 ~~~~~~~~---~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~ 1048 (1134)
....+... .......+.|++.|||++|++....|.+..+|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 54433211 11123467999999999988887799999999984
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00029 Score=63.69 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|+||||+..|+..+|..|+++.-..+... .+.+++|+.+....++.+++....+++ ++.+
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s 106 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 106 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 999999999999999999999999999888777766 899999999999888887776665543 3566
Q ss_pred HHHHHHHHHhh
Q 001160 140 RNIMLVELKKL 150 (1134)
Q Consensus 140 r~~l~~~l~~~ 150 (1134)
-+.|+..|++.
T Consensus 107 ~~lL~~fL~~~ 117 (138)
T 2j4b_A 107 FDLLINFLEER 117 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 67777777774
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.044 Score=58.44 Aligned_cols=193 Identities=10% Similarity=-0.021 Sum_probs=99.0
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCc--cceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCC
Q 001160 419 DGLMLGVAFSK-----HIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVA 486 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~ 486 (1134)
+++.++.|+.+ ..+.+||..+.+. ......+......-..+. .+++ +++.|+.+ ..+.++|+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 4689999887651 111111111111111222 2555 56666643 3688999888
Q ss_pred CeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEE
Q 001160 487 GRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLF 557 (1134)
Q Consensus 487 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~ 557 (1134)
.+.... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... ....+.+ +++.++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 211 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYV 211 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEE
Confidence 764332 2211111122222 33677777654 4588888876544332211111 1222222 566666
Q ss_pred EEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001160 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
.++.+... ...+.+||+.+.+....-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 76653322 3569999998876544322111111112222 256666777654 4678888877653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.031 Score=59.67 Aligned_cols=232 Identities=12% Similarity=0.028 Sum_probs=118.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001160 419 DGLMLGVAF-SK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAG 487 (1134)
Q Consensus 419 dg~~las~~-~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~ 487 (1134)
++..++.|+ .+ ..+.+||..+.+-.. ...+... .....+...++. +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--RRYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--CBSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--hccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 32 368889988754221 1111111 111122223455 66667654 46899998887
Q ss_pred e---eeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCE
Q 001160 488 R---KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTR 555 (1134)
Q Consensus 488 ~---~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 555 (1134)
+ .... +......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-...-..... ...++. -+++.
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 162 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI 162 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence 6 3322 1111111122222 33667777644 3578888876554332222111 122222 26666
Q ss_pred EEEEeeCCC-CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001160 556 LFSCGTSKE-GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.++.+.. ....+.+||+.+.+....-.......-.++.. -++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 163 yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 163 YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 667665322 13568999998876544322111111112222 255666667653 56899999887654432222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
.. .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 11222233367777777765 35788888765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.099 Score=55.80 Aligned_cols=234 Identities=7% Similarity=-0.074 Sum_probs=118.4
Q ss_pred CeEEEEEeCC--CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC----CeE
Q 001160 359 QTILLVGTNV--GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK----HIV 432 (1134)
Q Consensus 359 ~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d----g~i 432 (1134)
..+++.|+.+ ..+.+||..+++-..... +......-.++. -+++.++.|+.+ ..+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~ 72 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVF--WDNVVYILGGSQLFPIKRM 72 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEE--ECCEEEEEeCCCCCCcceE
Confidence 3577777654 578888888765332100 011111122222 267777787754 678
Q ss_pred EEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC------CcEEEEECCCCeeeEE--ecCCCCCeEEEE
Q 001160 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRKQYT--FEGHEAPVYSVC 504 (1134)
Q Consensus 433 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~i~ 504 (1134)
.+||..+.+-.. ...+.. ......+..-+++ +++.|+.+ ..+.+||+.+.+.... +......-.++.
T Consensus 73 ~~~d~~~~~W~~-~~~~p~--~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 147 (306)
T 3ii7_A 73 DCYNVVKDSWYS-KLGPPT--PRDSLAACAAEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147 (306)
T ss_dssp EEEETTTTEEEE-EECCSS--CCBSCEEEEETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred EEEeCCCCeEEE-CCCCCc--cccceeEEEECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence 899988764221 111111 1111112222555 56666655 4689999988765432 111111111222
Q ss_pred eeccCCccEEEEEec---------CCeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCC-CCCcEEEE
Q 001160 505 PHHKESIQFIFSTAI---------DGKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE-GESHLVEW 572 (1134)
Q Consensus 505 ~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~w 572 (1134)
+ ++.+++.|+. -..+.+||+.+..-...-..... ....+.+ +++.++.++.+.. ....+.+|
T Consensus 148 ~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 148 A----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp E----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEE
T ss_pred E----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEe
Confidence 1 3356666654 34578888876643332221111 1122222 5666666664321 12458999
Q ss_pred eCCCCeeEEEecCccCc-ceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEE
Q 001160 573 NESEGAIKRTYSGFRKR-SLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLT 624 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 624 (1134)
|+.+.+....-...... ...++.+ ++..++.|+.+ ..+.+||+.+.+-..
T Consensus 222 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp ETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred eCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 99887644331111110 1222222 56677777743 568999998866443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.052 Score=57.91 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=115.8
Q ss_pred CCEEEEEeCC----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC-----CcEEEEECCCCeee
Q 001160 420 GLMLGVAFSK----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD-----KMIKVWDVVAGRKQ 490 (1134)
Q Consensus 420 g~~las~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d-----~~i~iwd~~~~~~~ 490 (1134)
+..++.|+.+ ..+..||..+.+- .....+...... .+++ .-++. +++.|+.+ ..+.+||+.+.+..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555543 3578888887542 111111111111 1122 22454 66667654 36889998887643
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecCC-----eEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEee
Q 001160 491 YT--FEGHEAPVYSVCPHHKESIQFIFSTAIDG-----KIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 491 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~ 561 (1134)
.. +.........+.+ ++.+++.|+.++ .+.+||+.+.+-...-..... ...++. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 32 1111111122222 236777777553 477888776543332111111 112222 25666666665
Q ss_pred CCCC---CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCC
Q 001160 562 SKEG---ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLP 633 (1134)
Q Consensus 562 ~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1134)
+... ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-...-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3322 3458999998876544321111101112222 256666777653 4689999988765443222211
Q ss_pred CcceEEEccCCCEEEEEeCCC-----cEEEEECCCc
Q 001160 634 ASPRLRFNKEGSLLAVTTSDN-----GIKILANSDG 664 (1134)
Q Consensus 634 ~v~~~~~s~d~~~l~~~~~dg-----~i~iw~~~~~ 664 (1134)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222233677777877653 4888888765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.05 Score=58.21 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=117.2
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC----CcEEEEECCCCeeeEE--
Q 001160 421 LMLGVAFS--KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD----KMIKVWDVVAGRKQYT-- 492 (1134)
Q Consensus 421 ~~las~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~-- 492 (1134)
..++.|+. ...+.+||..+++-.. ...+......-..+ .-++. +++.|+.+ ..+.++|+.+++....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACV--FWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEE--EETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEE--EECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568889988754221 11111111111122 23555 66667654 6788999988765432
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCC--cEEEEEECCCCCEEEEEeeCCC
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
+.........+.+ ++.+++.|+.+ ..+.+||..+..-...-..... ...++. -+++.++.++.+..
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGN 161 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESC
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCC
Confidence 2111111122222 33677777765 4588888876553332211111 112222 35666666665332
Q ss_pred C-----CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 565 G-----ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 565 ~-----~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
. ...+.+||+.+.+....-.......-.++... +++.++.||.+ ..+.+||+.+.+-...-........
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 2 35689999988765433221111111122222 55666666643 4689999988764433222211111
Q ss_pred cceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001160 635 SPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
..++. -++++++.|+.+ ..+.+||..+.
T Consensus 241 ~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 241 VKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred eeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 12222 267788888754 56888888765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.059 Score=58.79 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=118.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEE---ecccCCeeEEEEecC---CCcEEEEEEcCC-----Cc
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---DAHVGGVNDIAFAHP---NKQLCIVTCGDD-----KM 478 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d---~~~~~l~sg~~d-----~~ 478 (1134)
.-..++|.|||+++++ ..+|.|.+++ +++ ......+ .........++|+|+ +..++ ++...+ +.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY-v~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVY-AYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEE-EEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEE-EEEecCCCCCccE
Confidence 4678999999985554 5679999998 332 1111111 112346789999998 55433 333322 67
Q ss_pred EEEEECCCCe-----eeE-Eec---CCCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEccCC-----
Q 001160 479 IKVWDVVAGR-----KQY-TFE---GHEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYL----- 531 (1134)
Q Consensus 479 i~iwd~~~~~-----~~~-~~~---~h~~~v~~i~~~~~~~~~~l~s~~~-------------d~~i~~wd~~~~----- 531 (1134)
|..++...+. .+. .+. +.......++|.|+ |.+.++.+. .+.|..++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8888876432 121 233 11112357888764 455555432 245655555420
Q ss_pred -------CceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCC-----CCcEEEEeCCC----------------CeeEEE
Q 001160 532 -------GSRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEG-----ESHLVEWNESE----------------GAIKRT 582 (1134)
Q Consensus 532 -------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-----~~~i~~wd~~~----------------~~~~~~ 582 (1134)
.....+.........++|+| ++...++-. ..+. ...|.+..... ..++..
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 01111111123456789999 555554432 1111 11243332211 012222
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee------EEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
+..+. ....++| .+|..+++.-..+.|...+++.... ...+-. ....+..+++.|||.++++...
T Consensus 264 ~~~~~--ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 264 WPQGF--PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp CTTCC--CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEECS
T ss_pred cCCCC--CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEeC
Confidence 32121 3456677 4566666555667787777664321 122211 1236789999999987776543
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00035 Score=63.80 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=74.0
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.|+||||+..| ..+|..|+++.-..+...+.+.+++|+.+....++.+++....+++ ++.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 4444 99999999999999999 9999999998877776567788889998888888877776666654 3555
Q ss_pred HHHHHHHHHhhcccCccccccCCCCCCchhHHHHHHHHHHH
Q 001160 140 RNIMLVELKKLIEANPLFRDKLSFPSFKSSRLRTLINQSLN 180 (1134)
Q Consensus 140 r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~q~~~ 180 (1134)
-..|+..|++.-.. -.+-|..+|++.+.
T Consensus 109 ~~lL~~fL~~~~~~-------------gg~~ll~Iin~~i~ 136 (148)
T 2j49_A 109 LNLLLYFLNENESI-------------GGSLIISVINQHLD 136 (148)
T ss_dssp HHHHHHHHHHTGGG-------------THHHHHHHHHHHEE
T ss_pred HHHHHHHHHHcCcc-------------cHHHHHHHHHHhee
Confidence 67777777763221 13357777776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.072 Score=58.12 Aligned_cols=241 Identities=11% Similarity=0.057 Sum_probs=127.8
Q ss_pred CceEEEEeccCCC-EEEEEeCCeEEEEECCCCeEEEEec-------CCCCceEEEEEcCC---CCcEEEEEeC-------
Q 001160 841 ESAACIALSKNDS-YVMSASGGKVSLFNMMTFKVMTMFM-------SPPPAATFLAFHPQ---DNNIIAIGME------- 902 (1134)
Q Consensus 841 ~~i~~~~~s~dg~-~la~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~lasg~~------- 902 (1134)
.....++|.|||+ ++++-..|.|++++.. ++....+. ........++|+|+ ++.+.++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3468899999999 6655458999999854 33221111 12235689999993 3444444332
Q ss_pred CCcEEEEEcCCc-------eEE-EEec-----CcccceEEEEEecCCCEEEEEcCC-------------CcEEEEeCCCc
Q 001160 903 DSSVQIYNVRVD-------EVK-TKLK-----GHQNRITGLAFSPTLNALVSSGAD-------------AQLCMWSIDKW 956 (1134)
Q Consensus 903 dg~i~iwd~~~~-------~~~-~~l~-----~h~~~i~~l~~s~d~~~l~s~~~D-------------~~i~iWd~~~~ 956 (1134)
...|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. +.|.-.+.+..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 235666666432 111 1111 132 3579999999877776542 34555555431
Q ss_pred ccc----------cceeeecCCCCCCCCcCceEEEECC-CCcEEEEEE--CCeEEEEeC-CCcc----------------
Q 001160 957 EKL----------KSRFIQAPAGRQSPLVGETKVQFHN-DQTHLLVVH--ESQISVYDS-KLEC---------------- 1006 (1134)
Q Consensus 957 ~~~----------~~~~~~~~~~~~~~~~~v~~~~fsp-dg~~l~~~~--d~~v~vwd~-~~~~---------------- 1006 (1134)
-.. ...... .++ .....++|.| +|+++++-. ++.=.|.-+ .+..
T Consensus 175 ~p~~npf~~~~~~~~~i~a--~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS--YGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE--ECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred CCCCCCCcCCCCCCccEEE--EcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 000 000000 111 2468899999 676666622 211222222 1110
Q ss_pred e--------eccCCC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCC
Q 001160 1007 S--------RSWSPK---DALPAPISSAIYSC-------DGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSN 1068 (1134)
Q Consensus 1007 ~--------~~~~~~---~~h~~~v~~v~~s~-------dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1134)
+ ..+... -.+......++|.. +|+++++....+.|...+++.++...... ... ..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~ 321 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DR 321 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GG
T ss_pred cCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CC
Confidence 0 000000 01123567788863 57777777778888888887664432211 110 11
Q ss_pred CCccEEEeecCCCCCEEEEEe-CCCcEEEEecC
Q 001160 1069 TAHPLVIAPHPSEPNQIALGM-SDGAVHVVEPS 1100 (1134)
Q Consensus 1069 ~~~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~~~ 1100 (1134)
...+..+++.| ||.++++.. .+| +||.+.
T Consensus 322 ~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 322 GQRIRDVRTGP-DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp CCCEEEEEECT-TSCEEEEECSTTE--EEEEEE
T ss_pred CCceeEEEECC-CCcEEEEEeCCCC--EEEEEe
Confidence 24688899999 777777543 344 556553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.29 Score=53.20 Aligned_cols=231 Identities=16% Similarity=0.085 Sum_probs=119.6
Q ss_pred CCeeEEEEecCCCeEEEEEeCCCcEEEEEccCcc-ccccccceeeccccccccccccccccCCcCeEEEEEcCC---CCE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRE-RLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPD---GLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spd---g~~ 422 (1134)
...+.++|.|||+ ++++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|+ +..
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4688999999997 5554 5569999887 3443 1110 0 0 11122356889999998 555
Q ss_pred EEEEeC----C----CeEEEEEcCCCC-ccc---ee-eEEe-cccCCeeEEEEecCCCcEEEEEEcC------------C
Q 001160 423 LGVAFS----K----HIVHLYTYNPTG-ELR---QH-LEID-AHVGGVNDIAFAHPNKQLCIVTCGD------------D 476 (1134)
Q Consensus 423 las~~~----d----g~i~iwd~~~~~-~~~---~~-~~~~-~h~~~v~~l~~s~d~~~~~l~sg~~------------d 476 (1134)
|.++.. + +.|..|+...+. .+. .+ ..+. +.......++|.|||. +++..|+. .
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~ 168 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLA 168 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCC
Confidence 554433 3 578888876541 111 11 1122 1111346799999997 23333321 2
Q ss_pred CcEEEEECCCCe----------eeEEecCCCCCeEEEEeeccCCccEEEEEecCC---eEEEEEccCCC-----------
Q 001160 477 KMIKVWDVVAGR----------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDG---KIKAWLYDYLG----------- 532 (1134)
Q Consensus 477 ~~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~----------- 532 (1134)
+.|.-.+.. |+ .+.. .++. ....++|++.. |.++++-...+ .|.+. ..+.
T Consensus 169 G~I~ri~~d-G~~p~~npf~~~~i~a-~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~ 242 (354)
T 3a9g_A 169 GKILRVDEE-GRPPADNPFPNSPIWS-YGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA 242 (354)
T ss_dssp SEEEEECTT-SCCCTTSSSTTCCEEE-ECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred eEEEEEcCC-CCCCCCCCCCCCcEEE-EccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence 455555543 32 1221 2333 34567887632 24444432221 12222 2111
Q ss_pred -------ceeEecCCCCcEEEEEEC-------CCCCEEEEEeeCCCCCCcEEEEeCCCC-eeE--EEecCccCcceEEEE
Q 001160 533 -------SRVDYDAPGNWCTMMAYS-------ADGTRLFSCGTSKEGESHLVEWNESEG-AIK--RTYSGFRKRSLGVVQ 595 (1134)
Q Consensus 533 -------~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~~~~~~~~v~~~~ 595 (1134)
....+.........++|. .+|+++++.. ..+.|...++... +.. ..+.......+..++
T Consensus 243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~ 318 (354)
T 3a9g_A 243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV 318 (354)
T ss_dssp CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE
T ss_pred CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEE
Confidence 112221223457788884 4665555543 3556888887643 322 223211123678899
Q ss_pred EeCCCCEEEEEe
Q 001160 596 FDTTRNRFLAAG 607 (1134)
Q Consensus 596 ~~~~~~~l~~~~ 607 (1134)
+.|||..+++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999997666653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.45 Score=53.66 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=62.7
Q ss_pred CceEEEEeccCCCEEEEEeC-CeEEEEECCCCeE--EEEecC------CCCceEEEEEcCC---CCcEEEEEeC------
Q 001160 841 ESAACIALSKNDSYVMSASG-GKVSLFNMMTFKV--MTMFMS------PPPAATFLAFHPQ---DNNIIAIGME------ 902 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sd-g~i~vwd~~~~~~--~~~~~~------~~~~i~~l~~s~~---~~~~lasg~~------ 902 (1134)
...+.++|.|||+++++-.. +.|++++..+++. +..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999998887665 4798888765543 223321 1345679999994 3444443332
Q ss_pred ------CCcEEEEEcCCc-------eEEE-EecC-cccceEEEEEecCCCEEEEEcC
Q 001160 903 ------DSSVQIYNVRVD-------EVKT-KLKG-HQNRITGLAFSPTLNALVSSGA 944 (1134)
Q Consensus 903 ------dg~i~iwd~~~~-------~~~~-~l~~-h~~~i~~l~~s~d~~~l~s~~~ 944 (1134)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555555321 1121 2221 1123678999999998887664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.58 Score=50.83 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=119.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeE----EecccCCeeEEEEecC---CCcEEEEEEcC------C
Q 001160 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE----IDAHVGGVNDIAFAHP---NKQLCIVTCGD------D 476 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~v~~l~~s~d---~~~~~l~sg~~------d 476 (1134)
....++|.|||+.|.++...|.|++++.++ ........ ..........++|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999444556789999998543 21111101 1112345789999996 55433332221 2
Q ss_pred CcEEEEECCCC--e--eeEE-ecC------CCCCeEEEEeeccCCccEEEEEec-------------CCeEEEEEccCCC
Q 001160 477 KMIKVWDVVAG--R--KQYT-FEG------HEAPVYSVCPHHKESIQFIFSTAI-------------DGKIKAWLYDYLG 532 (1134)
Q Consensus 477 ~~i~iwd~~~~--~--~~~~-~~~------h~~~v~~i~~~~~~~~~~l~s~~~-------------d~~i~~wd~~~~~ 532 (1134)
..|..|++..+ . .... +.. ....-..++|.|+ |.+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGK--GYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSS--SEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCC--CcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766533 1 1111 111 1112356888764 455555433 2456666665320
Q ss_pred ------------ceeEecCCCCcEEEEEECC-CCCEEEEEeeCCCCCCcEEEEeC--------CCC--------------
Q 001160 533 ------------SRVDYDAPGNWCTMMAYSA-DGTRLFSCGTSKEGESHLVEWNE--------SEG-------------- 577 (1134)
Q Consensus 533 ------------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~i~~wd~--------~~~-------------- 577 (1134)
....+.........++|.| +|++.++ -...++...|.+... ..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 1112222223578899999 5554443 222111112222110 000
Q ss_pred -------eeEEEecCccCcceEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-CCCCCcceEEEcc
Q 001160 578 -------AIKRTYSGFRKRSLGVVQFDT-------TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-GGLPASPRLRFNK 642 (1134)
Q Consensus 578 -------~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~ 642 (1134)
.++..+..+. ....+.|.. +|.++++.-..+.|...+++.++.......- .....+..+++.|
T Consensus 255 ~~~~~~~~P~~~~~~~~--ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSP--AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEESSCC--CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeCCCc--CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 0111122111 355677753 4666666667788888888766544332211 1123678999999
Q ss_pred CCCEEEEE
Q 001160 643 EGSLLAVT 650 (1134)
Q Consensus 643 d~~~l~~~ 650 (1134)
||.+.++.
T Consensus 333 dG~lyv~t 340 (353)
T 2g8s_A 333 DGYLYVLT 340 (353)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99866643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.13 Score=55.27 Aligned_cols=229 Identities=10% Similarity=-0.018 Sum_probs=112.8
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC-----C------CcEEEEECCCCeeeE
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD-----D------KMIKVWDVVAGRKQY 491 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~-----d------~~i~iwd~~~~~~~~ 491 (1134)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||+.+++...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence 44454 568899998865321 22222222333333445565 5566662 1 137788988876432
Q ss_pred EecCCCCCe--EEEEeeccCCccEEEEEecC--------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 492 TFEGHEAPV--YSVCPHHKESIQFIFSTAID--------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 492 ~~~~h~~~v--~~i~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
+.....+- .+++.. ++.+++.|+.+ ..+.+||..+.+-...-..........+..-+++.++.++.
T Consensus 82 -~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 82 -MPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp -CCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred -CCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence 21111111 111211 23666666643 35888888765432221111111111112245566666664
Q ss_pred CC--CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeeEEEEeCCCCCCC
Q 001160 562 SK--EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 562 ~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+. .....+.+||+.+.+....-.......-.+++. -+++.++.||.++ .+.+||+.+.+-...-..... .
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 234 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--R 234 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--C
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 21 113468999998876543222111111112222 2566777777543 588999988765443322211 1
Q ss_pred cceEEEccCCCEEEEEeCC--------------CcEEEEECCCc
Q 001160 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1134)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 235 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 1222223366777777763 24677887765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.099 Score=55.69 Aligned_cols=192 Identities=8% Similarity=0.015 Sum_probs=95.5
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC-----cEEEEECCCCe
Q 001160 419 DGLMLGVAFSK-----HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK-----MIKVWDVVAGR 488 (1134)
Q Consensus 419 dg~~las~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~-----~i~iwd~~~~~ 488 (1134)
+++.++.|+.+ ..+.+||..+.+-.. ...+......-..+. -+++ +++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAV--LNGL--LYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE--ETTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEE--ECCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence 67777777754 358889988754221 111111111111222 2454 555565443 57889988776
Q ss_pred eeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEccCCCceeEecCCC--CcEEEEEECCCCCEEE
Q 001160 489 KQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPG--NWCTMMAYSADGTRLF 557 (1134)
Q Consensus 489 ~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~ 557 (1134)
.... +....... +++.. ++.+++.|+.+ ..+.+||+.+..-...-.... .....+.+ +++.++
T Consensus 136 W~~~~~~p~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 209 (302)
T 2xn4_A 136 WFHVAPMNTRRSSV-GVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYA 209 (302)
T ss_dssp EEEECCCSSCCBSC-EEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred EeecCCCCCcccCc-eEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEE
Confidence 5432 11111111 22221 23666666543 347888887654333211111 11222222 566667
Q ss_pred EEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCee
Q 001160 558 SCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNM 622 (1134)
Q Consensus 558 ~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 622 (1134)
.++.+... ...+.+||+.+.+....-.......-.+++. -++..++.|+.+ ..+.+||+.+.+-
T Consensus 210 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 210 VGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp ECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred ECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 76653221 3469999998876543322111101111222 256666777654 3488888877653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.066 Score=57.89 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=102.3
Q ss_pred EEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCC----CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCce------
Q 001160 846 IALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSP----PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE------ 915 (1134)
Q Consensus 846 ~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~------ 915 (1134)
.....+|.-++++.++.||.-++......+.+... -..|..+..+| +|.+||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 45567888898888999999998754444444432 23688999999 999999775 5589998887321
Q ss_pred ------EEEEecC------cccceEEEEEecC---CCEEEEEcCCCcEEEEeCCCcccccceeeecCC---CCCCCCcCc
Q 001160 916 ------VKTKLKG------HQNRITGLAFSPT---LNALVSSGADAQLCMWSIDKWEKLKSRFIQAPA---GRQSPLVGE 977 (1134)
Q Consensus 916 ------~~~~l~~------h~~~i~~l~~s~d---~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~---~~~~~~~~v 977 (1134)
..+.+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... +.......+
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 1122221 2567999999995 56899999999999999987332111 121111 111222578
Q ss_pred eEEEECCCCcEEEE-E--ECCeEEEE
Q 001160 978 TKVQFHNDQTHLLV-V--HESQISVY 1000 (1134)
Q Consensus 978 ~~~~fspdg~~l~~-~--~d~~v~vw 1000 (1134)
.+++|.++|-.|.+ . .+|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 89999998876666 3 45677644
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.15 Score=54.55 Aligned_cols=233 Identities=7% Similarity=-0.023 Sum_probs=116.2
Q ss_pred CCCCEEEEEeC----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC----C-----CcEEEEEC
Q 001160 418 PDGLMLGVAFS----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----D-----KMIKVWDV 484 (1134)
Q Consensus 418 pdg~~las~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~----d-----~~i~iwd~ 484 (1134)
-++..++.|+. -..+.+||..+.+-.. ...+......- +++ ..++. +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 35667777763 2368889987754221 11111111111 222 22454 5666665 2 46889998
Q ss_pred CCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC-----CeEEEEEccCCCceeEecCC--CCcEEEEEECCCCCE
Q 001160 485 VAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID-----GKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTR 555 (1134)
Q Consensus 485 ~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~ 555 (1134)
.+.+.... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-... .....++.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 88764321 1111111122222 33666666643 35778888765433221111 112222233 5666
Q ss_pred EEEEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCC
Q 001160 556 LFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 556 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.++.+... ...+.+||+.+.+....-.......-.+++.. ++..++.|+.+ ..+.+||+.+.+-...-...
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 250 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC
Confidence 6676653322 35689999988765432211111111122222 56666667654 56999999887644332222
Q ss_pred CCCCCcceEEEccCCCEEEEEeCC-----CcEEEEECCCc
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSD-----NGIKILANSDG 664 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~d-----g~i~iw~~~~~ 664 (1134)
... .-.+++. -++++++.|+.+ ..+.+||..+.
T Consensus 251 ~~r-~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 251 HRR-SALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SCC-BSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCc-cceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 111 1122222 367777777753 45788888765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.18 Score=63.02 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=125.0
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001160 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
-+.-.+|..+.+|.-...++.|||+++...+..+.- ...|.-=.|-. .+.|+..+ +..|+-|++... .+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR 144 (1630)
T 1xi4_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (1630)
T ss_pred hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence 345678888888887788999999998777766653 34566666653 34555553 458999999642 44444544
Q ss_pred c----ccceEEEEEecCCCEEEEEc-------CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 923 H----QNRITGLAFSPTLNALVSSG-------ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 923 h----~~~i~~l~~s~d~~~l~s~~-------~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
| ...|..-..+++.++++..| -.|.+.+|.++.+.. +...||........--...+....++.
T Consensus 145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhhheeccCCCCCCceEEEE
Confidence 4 34577788899999888654 347888998887542 223344321100000000111222232
Q ss_pred EE----CCeEEEEeC-CC---c------ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecC
Q 001160 992 VH----ESQISVYDS-KL---E------CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 992 ~~----d~~v~vwd~-~~---~------~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~ 1056 (1134)
+. .+++.|-++ .. . ....+.+...-..--.++..|+.-..+...+.-|.|.++|+.||..+..-+
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 32 367777777 21 1 111112222223444577788887888888899999999999999987654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.4 Score=51.04 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=118.8
Q ss_pred EeccCCCEEEEEe-C----CeEEEEECCCCeEEEEecCCCCce-EEEEEcCCCCcEEEEEeC----C-----CcEEEEEc
Q 001160 847 ALSKNDSYVMSAS-G----GKVSLFNMMTFKVMTMFMSPPPAA-TFLAFHPQDNNIIAIGME----D-----SSVQIYNV 911 (1134)
Q Consensus 847 ~~s~dg~~la~~s-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~lasg~~----d-----g~i~iwd~ 911 (1134)
+..-++..++.|+ + ..+.+||..+.+-...-....... .+++. - ++.+++.|+. + ..+.+||.
T Consensus 20 ~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 20 APKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp -CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred ccCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 3344667777775 2 468999998765332211111111 12222 2 5678888776 2 46889998
Q ss_pred CCceEE--EEecCcccceEEEEEecCCCEEEEEcCC-----CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC
Q 001160 912 RVDEVK--TKLKGHQNRITGLAFSPTLNALVSSGAD-----AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 912 ~~~~~~--~~l~~h~~~i~~l~~s~d~~~l~s~~~D-----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
.+.+-. ..+......-..+. -++++++.||.+ ..+.+||..+.+-.....+ +... .....+.+
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r----~~~~~~~~-- 167 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRR----IGVGVAVL-- 167 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCC----BSCEEEEE--
T ss_pred CCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Cccc----cceEEEEE--
Confidence 876422 22221111122222 267777777644 3588899887653221111 1111 11222222
Q ss_pred CCcEEEEE-EC-----CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcceee
Q 001160 985 DQTHLLVV-HE-----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCD-----GAIGVFDAETLRFRC 1053 (1134)
Q Consensus 985 dg~~l~~~-~d-----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d-----g~I~vwd~~~~~~~~ 1053 (1134)
+++.++.+ .+ ..+.+||+.................-.++. -++++++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 66666664 22 468999985544443322211011112222 377778888765 458999998865432
Q ss_pred ecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCC-----cEEEEecCCCc
Q 001160 1054 RIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAE 1103 (1134)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~~~~~~ 1103 (1134)
.-. .+.. . ....++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 246 ~~~----~p~~---r-~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 246 VAP----MKHR---R-SALGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCC----CSSC---C-BSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCC----CCCC---c-cceEEEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 211 1111 1 11112222 567888888653 57788876544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.54 Score=50.20 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=113.6
Q ss_pred CCeEEEEECCCCeEE-EEecCCCCceEEEEEcCCCCcEEEEEeC-----C------CcEEEEEcCCceE--EEEecCccc
Q 001160 860 GGKVSLFNMMTFKVM-TMFMSPPPAATFLAFHPQDNNIIAIGME-----D------SSVQIYNVRVDEV--KTKLKGHQN 925 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~lasg~~-----d------g~i~iwd~~~~~~--~~~l~~h~~ 925 (1134)
...+.+||..+.+=. ..+..........+... ++.+++.|+. . ..+.+||..+++- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 367999999887633 22322223444444445 7788888884 1 1277888887642 222221111
Q ss_pred ceEEEEEecCCCEEEEEcCC--------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEEC---
Q 001160 926 RITGLAFSPTLNALVSSGAD--------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHE--- 994 (1134)
Q Consensus 926 ~i~~l~~s~d~~~l~s~~~D--------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d--- 994 (1134)
.-..+. -++++++.||.+ ..+.+||..+.+-.....+ +... ....+..-+++.++.++.
T Consensus 91 ~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYVV------YGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSCC------BSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCcc------cceeEEEECCEEEEEeCCCCC
Confidence 111222 266777777742 4588899987653221111 1111 112222346666666432
Q ss_pred ----CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCcceeeecCCcccccccc
Q 001160 995 ----SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1134)
Q Consensus 995 ----~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1134)
..+.+||............. .......+..-++++++.|+.++ .+.+||+.+.+-...-. .+..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CcccceEEEEeCCCCeEEECCCCC--CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 46899999554444333221 11111122233778888888765 48889998864433211 1111
Q ss_pred cCCCCccEEEeecCCCCCEEEEEeCCC--------------cEEEEecCCCc
Q 001160 1066 VSNTAHPLVIAPHPSEPNQIALGMSDG--------------AVHVVEPSDAE 1103 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~d~~~l~s~~~Dg--------------~v~vW~~~~~~ 1103 (1134)
. ....++.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 234 --r-~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 234 --R-SSLSLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp --C-BSCEEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred --c-cceeEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 1 11112222 557888888643 36677776544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.39 Score=51.43 Aligned_cols=230 Identities=13% Similarity=0.018 Sum_probs=111.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC----CC-------cEEEEECCCCeee
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD----DK-------MIKVWDVVAGRKQ 490 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~----d~-------~i~iwd~~~~~~~ 490 (1134)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEE
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEE
Confidence 3444443 37889988765332 12221112222333344555 6666762 11 2778898877643
Q ss_pred EE--ecCCCCCeEEEEeeccCCccEEEEEecC-------CeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 491 YT--FEGHEAPVYSVCPHHKESIQFIFSTAID-------GKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 491 ~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
.. +.........+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++.
T Consensus 92 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 21 1111111112222 23677777754 34777887765433322211111111112246666666664
Q ss_pred CCC--CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 562 SKE--GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE-----FQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 562 ~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
+.+ ....+.+||+.+.+....-.......-.+++. -++..++.||.+ ..+.+||+.+.+-...-..... .
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r 244 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--R 244 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--C
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--c
Confidence 221 13459999998876544322111111112222 256666667633 3577899887764433222111 1
Q ss_pred cceEEEccCCCEEEEEeCC--------------CcEEEEECCCc
Q 001160 635 SPRLRFNKEGSLLAVTTSD--------------NGIKILANSDG 664 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1134)
....+..-++++++.|+.+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 245 SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 1222223356777777653 35778887765
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.21 E-value=1.7 Score=46.49 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=58.3
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEECCCCe------------------EEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTFK------------------VMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~------------------~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
....++|+|+|.+.++-. ++.=.|--+..+. .+..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 456899999988766543 3322222222221 1222222223566788874 55665555
Q ss_pred CCCcEEEEEcCCceE----EEEecCcccceEEEEEecCCCEEEEEc
Q 001160 902 EDSSVQIYNVRVDEV----KTKLKGHQNRITGLAFSPTLNALVSSG 943 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~----~~~l~~h~~~i~~l~~s~d~~~l~s~~ 943 (1134)
..+.|....+..+.. ...+.+...++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666776666665432 223445557899999999998777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.5 Score=59.15 Aligned_cols=99 Identities=5% Similarity=0.060 Sum_probs=62.7
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..+|.|.|+..+..+.+-.... .+.-++|..+.++.-. ..++.|+|+++...+....... .|.--.|-.+ +
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCcccccccc----hhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCC-C
Confidence 4478899988766543322221 2344788887766653 7899999999988888776543 3444445433 3
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhhcCC
Q 001160 646 LLAVTTSDNGIKILANSDGVRLLRMLEGR 674 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1134)
.|+..+. ..|.-|++.....+.+.+..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHhcc
Confidence 4555544 489999997544555555444
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.7 Score=51.59 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=134.5
Q ss_pred cCCCEEEEEe--CCeEEEEECCCCeEEEEecC-CCCceEEEEEc--CCCCcEEEEEeC-------CCcE---------EE
Q 001160 850 KNDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFH--PQDNNIIAIGME-------DSSV---------QI 908 (1134)
Q Consensus 850 ~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s--~~~~~~lasg~~-------dg~i---------~i 908 (1134)
.||+||..-. +..|...+++..++-..+.- ....+..+.|- | ...+++.++. ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3889999987 68899999999988766653 34568888886 6 6667776653 3331 11
Q ss_pred E---EcCCceEEEEecCcccceEEEEEecCCCEEEEEcCC---------------CcEEEEeCCC-------cc--ccc-
Q 001160 909 Y---NVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGAD---------------AQLCMWSIDK-------WE--KLK- 960 (1134)
Q Consensus 909 w---d~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------~~i~iWd~~~-------~~--~~~- 960 (1134)
| |..+-+....+.- .+....+...++|.+.++.+.+ ..+.++++.. |+ .+.
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1111111111110 1122234456677777765532 1255666532 11 111
Q ss_pred --ceeeecCC----CCC-----CCCcCceEEEECCCCcEEEEEE--CCeEEEEeCC-------Ccc---eeccCCCCCCC
Q 001160 961 --SRFIQAPA----GRQ-----SPLVGETKVQFHNDQTHLLVVH--ESQISVYDSK-------LEC---SRSWSPKDALP 1017 (1134)
Q Consensus 961 --~~~~~~~~----~~~-----~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~~-------~~~---~~~~~~~~~h~ 1017 (1134)
...+.... +.. ........+.++|||++++++. +.++.|+|.+ .+. ...........
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111111 000 0013456889999999999964 6789999983 111 00111111124
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEeCCCc----------ceeeecCCcccccccccCCCCccEEEeecCCCCCEEEE
Q 001160 1018 APISSAIYSCDGLLVYAGFCDGAIGVFDAETL----------RFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIAL 1087 (1134)
Q Consensus 1018 ~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s 1087 (1134)
-.-...+|.++|.-..+-.-|..|.-|++.+. ..+.++..+ |.|.+.+.... =.-.| ||++|++
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-YqpGH~~~~~g----et~~~-dGk~lv~ 451 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQPGHLHASLC----ETNEA-DGKWLVA 451 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCEEEEEETTT----TSTTC-CSCEEEE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-cCCcccccCCC----ccCCC-CccEEEE
Confidence 56788999999955555668999999999864 344445443 23332111111 11134 7888888
Q ss_pred EeC---CC----------cEEEEecCCCc
Q 001160 1088 GMS---DG----------AVHVVEPSDAE 1103 (1134)
Q Consensus 1088 ~~~---Dg----------~v~vW~~~~~~ 1103 (1134)
.+. |. +-.+.|++-.+
T Consensus 452 lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 452 LSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred ecccccccCcCCCCCCCCcceeEecCCCc
Confidence 764 32 34667776544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.63 Score=50.06 Aligned_cols=188 Identities=7% Similarity=0.076 Sum_probs=107.2
Q ss_pred CeeEEEEecCCCcEEEEEE------------cCCCcEEEEECCC--Ceee-EEecC-----CCCCeEEEEeeccCCcc-E
Q 001160 455 GVNDIAFAHPNKQLCIVTC------------GDDKMIKVWDVVA--GRKQ-YTFEG-----HEAPVYSVCPHHKESIQ-F 513 (1134)
Q Consensus 455 ~v~~l~~s~d~~~~~l~sg------------~~d~~i~iwd~~~--~~~~-~~~~~-----h~~~v~~i~~~~~~~~~-~ 513 (1134)
...+++..|+|. .++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.++.++. +
T Consensus 51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 345666777765 44444 2689999999874 2221 12322 23467777776643433 3
Q ss_pred EEEE-ec--CCeEEEEEccCCCcee----EecC-CCCcEEEEEECCCCCEEEEEee---C----------CCCCCcEEEE
Q 001160 514 IFST-AI--DGKIKAWLYDYLGSRV----DYDA-PGNWCTMMAYSADGTRLFSCGT---S----------KEGESHLVEW 572 (1134)
Q Consensus 514 l~s~-~~--d~~i~~wd~~~~~~~~----~~~~-~~~~v~~~~~s~~~~~l~~~~~---~----------~~~~~~i~~w 572 (1134)
|+.+ .. +.+|.+|+++...... .+.. .-...+.+++.++|.+.++... + ....+.|+.+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4444 33 5678888887654332 2222 1236789999999987776531 0 1124567777
Q ss_pred eCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CeeE--EEEeCCCCCCCcceEEEcc-CCCEE
Q 001160 573 NESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDN-MNML--TTVDADGGLPASPRLRFNK-EGSLL 647 (1134)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~~~~s~-d~~~l 647 (1134)
|.. +......+.. .-+.++|+||++.++.+. ..+.|+.|++.. ++.. ..+... ...-.+++.+ +|.+.
T Consensus 209 d~~--~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 209 SPN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDLW 281 (355)
T ss_dssp CTT--CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCEE
T ss_pred ECC--eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcEE
Confidence 653 3222222211 467899999998887765 678999999863 3321 223221 2335566666 46655
Q ss_pred EEEe
Q 001160 648 AVTT 651 (1134)
Q Consensus 648 ~~~~ 651 (1134)
+++.
T Consensus 282 va~~ 285 (355)
T 3sre_A 282 VGCH 285 (355)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.98 E-value=2 Score=45.21 Aligned_cols=175 Identities=12% Similarity=0.082 Sum_probs=105.3
Q ss_pred EEEeccCCCEEEEEe--C-------------CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe--CC--Cc
Q 001160 845 CIALSKNDSYVMSAS--G-------------GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM--ED--SS 905 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~--~d--g~ 905 (1134)
+--++++|.+|+... + ..|+..+++..+...... .. +..|++ ++++|+... .+ ..
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~-~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASL-IGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEE-eCCEEEEEeecCCCCce
Confidence 345688999998876 2 257777777665322222 11 236777 677777665 33 45
Q ss_pred EEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcC-CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECC
Q 001160 906 VQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 906 i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
|+.-++... ....+..+.. .+++++++.|.-.+. ..+|..-++..+... .+. .+ .....++|
T Consensus 131 Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~---~l~--~~-------~~~~~~~P 193 (302)
T 3s25_A 131 LYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA---LFY--DC-------NCYKPVVL 193 (302)
T ss_dssp EEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE---EEE--CS-------CEEEEEEE
T ss_pred EEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE---EEe--CC-------Cccceeee
Confidence 555566533 3444544432 456888988886664 577888888775532 121 11 12234679
Q ss_pred CCcEEEEEE--C-CeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEeCCCc
Q 001160 985 DQTHLLVVH--E-SQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF--CDGAIGVFDAETL 1049 (1134)
Q Consensus 985 dg~~l~~~~--d-~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~--~dg~I~vwd~~~~ 1049 (1134)
++++|+-.. + ..|..-++.+.....+.. ..+ ..|+|++++|+-++ ..+.|..-+++..
T Consensus 194 ~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 194 DDTNVYYMDVNRDNAIVHVNINNPNPVVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEECSSSCCCEECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred cCCEEEEEEcCCCcEEEEEECCCCCeEEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 999998753 2 367777776665554432 233 34889999887653 2356777777643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.6 Score=50.93 Aligned_cols=231 Identities=13% Similarity=0.086 Sum_probs=111.9
Q ss_pred CCCEEEEEe--CCeEEEEECCC--C--eEEEEec-CCCCceEEEEEcCCCCcEEEEEeC-C---------CcEEEEEcCC
Q 001160 851 NDSYVMSAS--GGKVSLFNMMT--F--KVMTMFM-SPPPAATFLAFHPQDNNIIAIGME-D---------SSVQIYNVRV 913 (1134)
Q Consensus 851 dg~~la~~s--dg~i~vwd~~~--~--~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~-d---------g~i~iwd~~~ 913 (1134)
++++++.|+ ...+.+||..+ . +.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 777777776 46799999864 2 2222222 11111222333 5678888876 2 4688999887
Q ss_pred ceE--EEEecCcccceEEEEEecCCCEEEEEcCC---------------------------------------CcEEEEe
Q 001160 914 DEV--KTKLKGHQNRITGLAFSPTLNALVSSGAD---------------------------------------AQLCMWS 952 (1134)
Q Consensus 914 ~~~--~~~l~~h~~~i~~l~~s~d~~~l~s~~~D---------------------------------------~~i~iWd 952 (1134)
.+= +..+.. .......+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHAP-MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCCS-SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCCC-cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 642 222220 1111111222578888888865 4688899
Q ss_pred CCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEE-------CCeEEEEeC--CCcceeccCCCCCCCCCeEEE
Q 001160 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH-------ESQISVYDS--KLECSRSWSPKDALPAPISSA 1023 (1134)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~-------d~~v~vwd~--~~~~~~~~~~~~~h~~~v~~v 1023 (1134)
..+.+-.... ..+.... .-..++ .-+++.++.++ ...+.+||+ .....................
T Consensus 175 ~~~~~W~~~~--~~p~~~~----~~~~~~-~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 175 PSTQQWSYAG--ESPWYGT----AGAAVV-NKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp TTTTEEEEEE--ECSSCCC----BSCEEE-EETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred CCCCcEEECC--CCCCCCc----ccccEE-EECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 8876533221 1111110 101222 23566666632 235777876 444333332211101111222
Q ss_pred EEccCCCEEEEEecC----------------------CcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCC
Q 001160 1024 IYSCDGLLVYAGFCD----------------------GAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSE 1081 (1134)
Q Consensus 1024 ~~s~dg~~l~~~~~d----------------------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 1081 (1134)
+...++++++.|+.+ ..+.+||+.+.+-...-. .|.. . ....++.+ +
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~---r-~~~~~~~~---~ 316 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQG---R-AYGVSLPW---N 316 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSC---C-BSSEEEEE---T
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCC---c-ccceeEEe---C
Confidence 334577777777743 257789988764332111 1111 1 11122333 5
Q ss_pred CCEEEEEeCCC------cEEEEecCCCc
Q 001160 1082 PNQIALGMSDG------AVHVVEPSDAE 1103 (1134)
Q Consensus 1082 ~~~l~s~~~Dg------~v~vW~~~~~~ 1103 (1134)
+.+++.|+.++ .|.+.++.+.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 68889999764 34445666544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.12 Score=50.33 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=83.4
Q ss_pred ceEEEEeccCCCEEEEEeCCeEEEEECCCCeE------EEEec-CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc
Q 001160 842 SAACIALSKNDSYVMSASGGKVSLFNMMTFKV------MTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~------~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~ 914 (1134)
.++.++|+|||.+.++ .+|.+.-.+..+... -..+- .--..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888776666544211 01110 0001137899999 8888877 5699988875432
Q ss_pred eE-------EEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccc----cceeeecCCCCCCCCcCceEEEEC
Q 001160 915 EV-------KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKL----KSRFIQAPAGRQSPLVGETKVQFH 983 (1134)
Q Consensus 915 ~~-------~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~fs 983 (1134)
.. ...-.+-=..+..|.|.|+|.+.+.. |+.++-+...++... ....+..... ..-+.+.|.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-----~~yr~l~f~ 190 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-----DTFKFLFFS 190 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-----GGEEEEEEC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-----ceEEEEEEC
Confidence 11 11111111457899999999877766 776543333221110 0011111111 123567799
Q ss_pred CCCcEEEEEECCeE
Q 001160 984 NDQTHLLVVHESQI 997 (1134)
Q Consensus 984 pdg~~l~~~~d~~v 997 (1134)
++|...++. ++.+
T Consensus 191 ~~G~l~~v~-~g~~ 203 (236)
T 1tl2_A 191 SVGTLFGVQ-GGKF 203 (236)
T ss_dssp TTSCEEEEE-TTEE
T ss_pred CCCcEEEEe-CCeE
Confidence 999988887 6643
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0087 Score=47.72 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCccH--HHHHHHhhcccHHHHHHHhcC
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KHFEDQVQAGEWDEVERYLCG 59 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~l~~ 59 (1134)
.+|+.+-|++||..+||.+++.+|.+|.|+..+. ..--.-.++-+|..++++=++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 5689999999999999999999999999988752 222345777888888775443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.62 Score=50.42 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=88.3
Q ss_pred CCeEEEEEccCCCceeEecCC----CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe------------eEEEe
Q 001160 520 DGKIKAWLYDYLGSRVDYDAP----GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA------------IKRTY 583 (1134)
Q Consensus 520 d~~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~------------~~~~~ 583 (1134)
++.||.-++.....-..+... -..+..+..+|+|++|+..+ +..|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 356666666543333333333 23577899999999999986 5668888876321 12233
Q ss_pred cCc-----cCcceEEEEEeCCC---CEEEEEeCCCeEEEEECCCCe--eEEEEe-------CCCCCCCcceEEEccCCCE
Q 001160 584 SGF-----RKRSLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMN--MLTTVD-------ADGGLPASPRLRFNKEGSL 646 (1134)
Q Consensus 584 ~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~~~~s~d~~~ 646 (1134)
... ...+|..+.|+|-+ ..|++-..|+.|++||+.... +. .+. .......|.+++|..++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 322 12368999999965 689999999999999998622 22 222 2222356889999998877
Q ss_pred EEEEe--CCCcEEEE
Q 001160 647 LAVTT--SDNGIKIL 659 (1134)
Q Consensus 647 l~~~~--~dg~i~iw 659 (1134)
|...+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 77755 77777654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.58 Score=50.10 Aligned_cols=215 Identities=13% Similarity=0.083 Sum_probs=111.0
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEe----cCcccceEEEEEecC----CCEEEEE--cCCCc
Q 001160 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKL----KGHQNRITGLAFSPT----LNALVSS--GADAQ 947 (1134)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l----~~h~~~i~~l~~s~d----~~~l~s~--~~D~~ 947 (1134)
.-.....|+|.| +++++++--..|.|++++..+++. +..+ .........|+++|| +.+.++- ..++.
T Consensus 30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 345678999999 888777655589999998765543 2222 123456789999996 4444432 23455
Q ss_pred EEEEeCCCcc----cc-c-ceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--------------CCeEEEEeCCCcc-
Q 001160 948 LCMWSIDKWE----KL-K-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--------------ESQISVYDSKLEC- 1006 (1134)
Q Consensus 948 i~iWd~~~~~----~~-~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--------------d~~v~vwd~~~~~- 1006 (1134)
|.-|.+..+. .+ . ..++...... .......++|.|||.++++.. .+.|.-.+..+..
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~--~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKG--VIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCC--SSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCC--CCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 6666665421 11 1 1112211110 112357899999998877732 2445545554431
Q ss_pred -------eeccCCCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCcceee----ecC--Ccccc-cccccCCC-C
Q 001160 1007 -------SRSWSPKDALPAPISSAIYSCDGLLVYAGF-CDGAIGVFDAETLRFRC----RIG--PSAYI-PTYAVSNT-A 1070 (1134)
Q Consensus 1007 -------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~-~dg~I~vwd~~~~~~~~----~~~--~~~~~-~~~~~~~~-~ 1070 (1134)
...+. .+| .....++|.|+|++.++-. .|+.=.|--+..|.... .-. ...+. |....... .
T Consensus 187 ~~nPf~~~~i~a--~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 187 PGNPFPGSPVYS--YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp TTCSSTTCCEEE--BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred CCCCCCCCeEEe--eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11111 122 2356789999888655432 23322232222222110 000 00000 11111111 3
Q ss_pred ccEEEeecCCCCCEEEEEeCCCcEEEEecCCC
Q 001160 1071 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDA 1102 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~ 1102 (1134)
.+..++|. +|.+++..-..+.|....+...
T Consensus 264 ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 264 SPSGIAYA--EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp CEEEEEEE--TTEEEEEESTTCSEEEEEEETT
T ss_pred CCcceEEE--cCceeeccccCCEEEEEEecCC
Confidence 56677776 4567777766666766666543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.8 Score=48.92 Aligned_cols=200 Identities=9% Similarity=-0.016 Sum_probs=95.2
Q ss_pred EEEcCCCCEEEEEeC----CC-------eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC------
Q 001160 414 CVWGPDGLMLGVAFS----KH-------IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------ 476 (1134)
Q Consensus 414 i~~spdg~~las~~~----dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------ 476 (1134)
.+...++..++.|+. ++ .+.+||..+.+-.. ...+....... +++. -+++ +++.|+.+
T Consensus 51 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--iyv~GG~~~~~~~~ 125 (318)
T 2woz_A 51 SIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCLF-GLGE-VDDK--IYVVAGKDLQTEAS 125 (318)
T ss_dssp EEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCSC-EEEE-ETTE--EEEEEEEBTTTCCE
T ss_pred EEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCcccccc-ceEE-ECCE--EEEEcCccCCCCcc
Confidence 334567888888873 12 27778887653221 11111111111 1222 2444 55555543
Q ss_pred -CcEEEEECCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEecCCCC--cEE
Q 001160 477 -KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYDAPGN--WCT 545 (1134)
Q Consensus 477 -~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~--~v~ 545 (1134)
..+.++|+.+.+.... +......-. ++. . ++.+++.|+.+ ..+.+||+.+.+-...-..... ...
T Consensus 126 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 126 LDSVLCYDPVAAKWSEVKNLPIKVYGHN-VIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EEEEEEEETTTTEEEEECCCSSCEESCE-EEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cceEEEEeCCCCCEeECCCCCCcccccE-EEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccce
Confidence 3578899887765432 111111111 111 1 33666666542 3588888876543332111111 112
Q ss_pred EEEECCCCCEEEEEeeCCCC-CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCC--------------C
Q 001160 546 MMAYSADGTRLFSCGTSKEG-ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDE--------------F 610 (1134)
Q Consensus 546 ~~~~s~~~~~l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g 610 (1134)
++. -+++.++.++.+.++ ...+.+||+.+.+....-.......-.++. .-++..++.||.+ .
T Consensus 202 ~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 202 VAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp EEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred EEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence 222 256677777653221 235788998877644322111110111222 2245666666643 3
Q ss_pred eEEEEECCCCeeEEE
Q 001160 611 QIKFWDMDNMNMLTT 625 (1134)
Q Consensus 611 ~i~iwd~~~~~~~~~ 625 (1134)
.+.+||+.+.+-...
T Consensus 279 ~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM 293 (318)
T ss_dssp CEEEEETTTTEEEEE
T ss_pred eEEEEeCCCCEehhh
Confidence 577788777655443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.56 Score=52.82 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE--EEEecC------cccceEEEEEecC----CCEEEEEcC----
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV--KTKLKG------HQNRITGLAFSPT----LNALVSSGA---- 944 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~--~~~l~~------h~~~i~~l~~s~d----~~~l~s~~~---- 944 (1134)
-.....|+|.| +|+++++-...+.|++++..+++. +..+.. .......|+|+|| +.+.++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34567999999 888777544335798888655543 222321 2456779999995 444444332
Q ss_pred --------CCcEEEEeCCCcc-cc-c-ceeeecCCCCCCCCcCceEEEECCCCcEEEEE
Q 001160 945 --------DAQLCMWSIDKWE-KL-K-SRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV 992 (1134)
Q Consensus 945 --------D~~i~iWd~~~~~-~~-~-~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~ 992 (1134)
...|.-+++..+. .+ . ..++...... .......++|.|||+++++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~--~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS--KDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC--SSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC--CCCCCCeEeECCCCeEEEEE
Confidence 1345555554321 11 1 1122211111 11346899999999988874
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.99 E-value=6 Score=44.36 Aligned_cols=121 Identities=10% Similarity=0.043 Sum_probs=68.7
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
..+.||+..|.|+|+-+.+++.+..+.-....-. .-|-.++....++..+ + ...| -..|.. .+
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~-~G~G~t~esk~il~~~--~-~~~~----------gD~HHp---~~ 133 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSA-TGWGLTNESRHIMGDS--A-KFLN----------GDCHHP---HI 133 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTT-TCTTTBHHHHHHHGGG--G-GCCC----------CCCCCC---EE
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCC-cccCCchhHHHHHhcC--C-CccC----------CCcCCC---cc
Confidence 3688999999999999999999888752110000 0000000000000000 0 0001 011111 22
Q ss_pred EEC---CCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEe--CCCCEEEEEeC
Q 001160 548 AYS---ADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD--TTRNRFLAAGD 608 (1134)
Q Consensus 548 ~~s---~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~ 608 (1134)
++. -||++|+... ..+.+|...++...++-+.+.......+..++|- |+..+++++++
T Consensus 134 S~tdg~yDGrylfiNd---kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 134 SMTDGKYDGKYLFIND---KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp EEETTEEEEEEEEEEE---TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred cccCCeeeeEEEEEec---CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 222 3678888764 2467788889998887766665555578888886 67788888773
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.96 Score=49.24 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=66.5
Q ss_pred CcEEEEECCCCeeeEE--ecCCCCCeEEEEeeccCCccEEEEEecC------CeEEEEEccCCCceeEec----CCCCcE
Q 001160 477 KMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIFSTAID------GKIKAWLYDYLGSRVDYD----APGNWC 544 (1134)
Q Consensus 477 ~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~----~~~~~v 544 (1134)
..+.++|+.+.+.... +......-.+++.. ++.+++.|+.+ ..+..||++......... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~ 244 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA 244 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence 5789999988765432 22111110222222 23566666542 356777763332222211 111111
Q ss_pred EEEEECCCCCEEEEEeeCCCCC------------------CcEEEEeCCCCeeEE--EecCccCcceEEEEEeCCCCEEE
Q 001160 545 TMMAYSADGTRLFSCGTSKEGE------------------SHLVEWNESEGAIKR--TYSGFRKRSLGVVQFDTTRNRFL 604 (1134)
Q Consensus 545 ~~~~~s~~~~~l~~~~~~~~~~------------------~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~ 604 (1134)
...+...+++.++.++.+.++. ..+.+||+.+.+... .+..... . ..+...+++.++
T Consensus 245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~--~~~~~~~~~i~v 321 (357)
T 2uvk_A 245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA-Y--GVSLPWNNSLLI 321 (357)
T ss_dssp SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB-S--SEEEEETTEEEE
T ss_pred cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc-c--ceeEEeCCEEEE
Confidence 1112234566667766432110 247889988765433 2322221 1 122334667777
Q ss_pred EEeCCC------eEEEEECCCCeeEEEEeCC
Q 001160 605 AAGDEF------QIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 605 ~~~~dg------~i~iwd~~~~~~~~~~~~~ 629 (1134)
.||.++ .|.++++++++.+.....+
T Consensus 322 ~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 322 IGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred EeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 787442 4666688887766655433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.062 Score=52.33 Aligned_cols=147 Identities=14% Similarity=0.049 Sum_probs=81.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceE------EEEe--cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCC
Q 001160 883 AATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEV------KTKL--KGHQNRITGLAFSPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 883 ~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~------~~~l--~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.++.++|+| ++.+.++ .+|.++-.+..+.+. -..+ .+-.. -.++.|.|+|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8887776 777777666544211 1111 01111 378999999998887 56888877753
Q ss_pred CcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceecc----CCCCCCCCCeEEEEEccCC
Q 001160 955 KWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW----SPKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~----~~~~~h~~~v~~v~~s~dg 1029 (1134)
+.......-....-+. ..-..+..+.|.|+|.+.++. ++.+.-+.. ......-+ .........-.-+.|+++|
T Consensus 116 ~~~~~~Wl~~a~~vg~-~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGS-GGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEEC-SSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEecc-CCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3221111000000000 000356899999999999998 888543332 11111100 0000112234456688888
Q ss_pred CEEEEEecCC
Q 001160 1030 LLVYAGFCDG 1039 (1134)
Q Consensus 1030 ~~l~~~~~dg 1039 (1134)
.+.++. +|
T Consensus 194 ~l~~v~--~g 201 (236)
T 1tl2_A 194 TLFGVQ--GG 201 (236)
T ss_dssp CEEEEE--TT
T ss_pred cEEEEe--CC
Confidence 766654 66
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.98 Score=48.04 Aligned_cols=115 Identities=8% Similarity=-0.035 Sum_probs=69.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecc-cCCeeEEEE--ecCCCcEEEEEE-cCCCcEEEEECCCCeeeEEecC-
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAH-VGGVNDIAF--AHPNKQLCIVTC-GDDKMIKVWDVVAGRKQYTFEG- 495 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~--s~d~~~~~l~sg-~~d~~i~iwd~~~~~~~~~~~~- 495 (1134)
..+++++.||.|.-.|..+|+..- .+... ..++....- .+.+.. .++.. +.||.|..+|..+|.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W---~~~~~~~~p~~~~~~~~~~~~~~-~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIW---SIEPENFQPLIEIQEPSRLETYE-TLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEE---EECGGGSCCSEECCCSCTTTSSE-EEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEE---EecCCccCCcEEecCCccccCCc-EEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 367788889999988988887554 22221 112211110 011222 33333 6899999999988865544321
Q ss_pred ---CCCCeEEEEeeccC-------CccEEEEEecCCeEEEEEccCCCceeEecCC
Q 001160 496 ---HEAPVYSVCPHHKE-------SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP 540 (1134)
Q Consensus 496 ---h~~~v~~i~~~~~~-------~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 540 (1134)
...++.. .-.|-- .+..+++|+.+|++...|+.+++.+..+...
T Consensus 87 ~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 1222221 100101 3368999999999999999999999887654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.32 Score=51.79 Aligned_cols=200 Identities=8% Similarity=0.021 Sum_probs=104.6
Q ss_pred cEEEEEeCCCcEEEEEcCCceEEEEecCc-ccceEEEEE--ec-CCCEEEEE-cCCCcEEEEeCCCcccccceeeecCCC
Q 001160 895 NIIAIGMEDSSVQIYNVRVDEVKTKLKGH-QNRITGLAF--SP-TLNALVSS-GADAQLCMWSIDKWEKLKSRFIQAPAG 969 (1134)
Q Consensus 895 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~i~~l~~--s~-d~~~l~s~-~~D~~i~iWd~~~~~~~~~~~~~~~~~ 969 (1134)
.++++++.||.|+-.|..+|+.+..+... ..++....- .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47788999999999999999999998754 122222110 01 23333333 579999999988875432111111110
Q ss_pred CCCCCcCceE---EEE------CCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCC----CCeEEEEEc-----cCCC
Q 001160 970 RQSPLVGETK---VQF------HNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALP----APISSAIYS-----CDGL 1030 (1134)
Q Consensus 970 ~~~~~~~v~~---~~f------spdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~----~~v~~v~~s-----~dg~ 1030 (1134)
. .+... ... +.+|..++.+.++++...|+ +|+.+..+....... ....|.... ..+.
T Consensus 91 ~----SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 T----SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp T----CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred c----cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0 00100 001 23444444478899999999 777777665432110 001111111 1235
Q ss_pred EEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEE--EeecCCCCCEEEEEeCCCcEEEEecCCCcccc
Q 001160 1031 LVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLV--IAPHPSEPNQIALGMSDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1031 ~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1106 (1134)
.|+.+..+..+.+.+ .+|+ +.......+.+.. . ..++. ...+ .|+.+ +.++.||.|.-.|..+++..|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~-~~~~~~~~~~s-~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---L-DVPLALQNTFS-KDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---T-THHHHTTCSSC-SSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccc---c-ccccccccccc-cCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 5564 3322211111110 0 00000 0001 14555 447889999999988888888
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.33 E-value=6 Score=41.44 Aligned_cols=179 Identities=8% Similarity=0.037 Sum_probs=99.9
Q ss_pred EEEEecCCCeEEEEEeCC-------------CcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 351 SMDFHPQQQTILLVGTNV-------------GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 351 ~v~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
+--++++|.+|..+...+ +.|+..++..++... +.. . .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~--~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--D--PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--S--CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--C--CccEEE
Confidence 456689999777766544 356666666554221 111 1 123788
Q ss_pred CCCCEEEEEe----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEE-EEcCCCcEEEEECCCCeeeEE
Q 001160 418 PDGLMLGVAF----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV-TCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 418 pdg~~las~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~-sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++++|+-.. .+..|...++++.. .. .+..+.. .+|+++++. |+ +......|.+-++..+.....
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~--iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY--FYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE--EEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE--EEEEeCCCceEEEEECCCCCEEEE
Confidence 8999999876 24456666666433 22 3333322 457888984 44 333467899989876654433
Q ss_pred ecCCCCCeEEEEeeccCCccEEEEEecCC--eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDG--KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 493 ~~~h~~~v~~i~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
+.+ ... ..++|.+ .+|+-....+ .|..-+++..... .+.. ..+ ..|+|++++|+.+... ....|.
T Consensus 183 ~~~---~~~-~~~~P~g--~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~ 249 (302)
T 3s25_A 183 YDC---NCY-KPVVLDD--TNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALC 249 (302)
T ss_dssp ECS---CEE-EEEEEET--TEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEE
T ss_pred eCC---Ccc-ceeeecC--CEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEE
Confidence 332 222 2344554 5666555443 4555555544432 2221 223 3478889999866421 235677
Q ss_pred EEeCCC
Q 001160 571 EWNESE 576 (1134)
Q Consensus 571 ~wd~~~ 576 (1134)
.-++..
T Consensus 250 ~~~~DG 255 (302)
T 3s25_A 250 VVKNDG 255 (302)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 777654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.85 E-value=15 Score=41.18 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=59.4
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceeeEEe---------cccCCeeEEEEecC---CCcEEEEEEc-C
Q 001160 410 SVNRCVWGPDGL-MLGVAFSKHIVHLYTYNPTGELRQHLEID---------AHVGGVNDIAFAHP---NKQLCIVTCG-D 475 (1134)
Q Consensus 410 ~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d---~~~~~l~sg~-~ 475 (1134)
.-..|+|.|||+ .|+++...|.|++++.+.......+..+. +.......|+|+|+ +..++++-.. .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 56666789999999754321111111111 11456789999996 3333333222 1
Q ss_pred C----------CcEEEEECCC----------CeeeEEec--CCCCCeEEEEeeccCCccEEEEEecC
Q 001160 476 D----------KMIKVWDVVA----------GRKQYTFE--GHEAPVYSVCPHHKESIQFIFSTAID 520 (1134)
Q Consensus 476 d----------~~i~iwd~~~----------~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~d 520 (1134)
+ ..|.-|.+.. .+.+..+. ........|+|.|+ |.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpD--G~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPD--GFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTT--SCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCC--CcEEEEeCCC
Confidence 1 1444466542 12333332 22234577888774 4666665543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.97 E-value=17 Score=39.82 Aligned_cols=260 Identities=12% Similarity=-0.005 Sum_probs=120.0
Q ss_pred CCceEEEEecc--CCCEEEEEeCC----eEEEEECCCCeEEEEec------C--------CCCceEEEEEcCCC-CcEEE
Q 001160 840 EESAACIALSK--NDSYVMSASGG----KVSLFNMMTFKVMTMFM------S--------PPPAATFLAFHPQD-NNIIA 898 (1134)
Q Consensus 840 ~~~i~~~~~s~--dg~~la~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~~-~~~la 898 (1134)
...|.++++.| ++.+.|.+..| .|... .+.++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45789999998 66666665554 34333 22222211111 1 11257789998733 44555
Q ss_pred EEeCCCcEEEEEcCCc---eEEEEecC----------------cccceEEEEEecC-CCEEEEEcCCCcEEEEeCCCccc
Q 001160 899 IGMEDSSVQIYNVRVD---EVKTKLKG----------------HQNRITGLAFSPT-LNALVSSGADAQLCMWSIDKWEK 958 (1134)
Q Consensus 899 sg~~dg~i~iwd~~~~---~~~~~l~~----------------h~~~i~~l~~s~d-~~~l~s~~~D~~i~iWd~~~~~~ 958 (1134)
+++..+.|...+ +.| +.+..+.. ....|.+|.+.|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 566666655543 222 22211111 1235788999873 34444444344344332 22221
Q ss_pred ccceeeec-CCC-CCC-----CCcCceEEEECCC-CcEEEEEECCeEEEEeCCCcceeccCCCCCC--CCCeEEEEEccC
Q 001160 959 LKSRFIQA-PAG-RQS-----PLVGETKVQFHND-QTHLLVVHESQISVYDSKLECSRSWSPKDAL--PAPISSAIYSCD 1028 (1134)
Q Consensus 959 ~~~~~~~~-~~~-~~~-----~~~~v~~~~fspd-g~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h--~~~v~~v~~s~d 1028 (1134)
...+.. ... ... ....+..+++.|+ ...|.++..+.|...+-.++....+...... ...+.+++++|.
T Consensus 211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence 001110 000 000 0024788999986 3566666666666555444444333221100 134667888763
Q ss_pred -CCEEEEEec-----------CCcEEEEeCCC-cceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEE
Q 001160 1029 -GLLVYAGFC-----------DGAIGVFDAET-LRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVH 1095 (1134)
Q Consensus 1029 -g~~l~~~~~-----------dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~ 1095 (1134)
...|+++.. ++...+|.-.+ |+.-..+.. -+|....-......+++++|.++..|..++.++.|
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l- 365 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI- 365 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence 344444432 33345555443 333332221 11111000001112466777665667777666654
Q ss_pred EEecCCCccccCC
Q 001160 1096 VVEPSDAELKWGG 1108 (1134)
Q Consensus 1096 vW~~~~~~~~~~~ 1108 (1134)
|.-.++..+|..
T Consensus 366 -~~S~D~G~tW~~ 377 (394)
T 3b7f_A 366 -WASADEGEHWQC 377 (394)
T ss_dssp -EEESSTTSBCEE
T ss_pred -EEECCCCCCceE
Confidence 444444455653
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.63 E-value=10 Score=39.28 Aligned_cols=222 Identities=16% Similarity=0.080 Sum_probs=112.4
Q ss_pred CceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe
Q 001160 841 ESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l 920 (1134)
..|..++....-. ++.. ||.|..|-....-.+..-......|..++... ...++. . ||.|+.|-....-.+..-
T Consensus 24 ~~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 3456666544322 2333 78888886543211110011123577777754 234444 5 999999976542111111
Q ss_pred cCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEE
Q 001160 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVY 1000 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vw 1000 (1134)
..-...|..++...+.... .. |+.|..|-......+.. .... ...+..++...+...+ .. ++.|..|
T Consensus 98 ~~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~---~~~~-----~~~i~~i~~G~~~~~~-l~-~G~v~~w 164 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTV---PAEA-----QSGVTALDGGVYTALA-VK-NGGVIAW 164 (282)
T ss_dssp GGGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSC---CGGG-----GSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred cccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCC---CccC-----CCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence 1113468888876554333 34 89999998765332210 0000 1245555544433322 24 8999999
Q ss_pred eC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecC
Q 001160 1001 DS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079 (1134)
Q Consensus 1001 d~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1134)
-. ...++.. ... ....|..++...+.. ++. .||.|+.|-....-.+.. |... . ..+..++.-.
T Consensus 165 G~n~~gqlg~-p~~--~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-------p~~~-~--~~v~~i~~G~ 228 (282)
T 3qhy_B 165 GDNYFGQTTV-PAE--AQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-------PTEA-L--SGVSAIASGE 228 (282)
T ss_dssp ECCTTSTTSC-CGG--GGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-------CGGG-G--SSCCEEEECS
T ss_pred cCCCCCCCCC-cee--cCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-------Cccc-C--CCceEEEcCC
Confidence 87 2222211 100 135688887655544 333 599999998765433221 1100 1 1233444322
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 001160 1080 SEPNQIALGMSDGAVHVVEPSD 1101 (1134)
Q Consensus 1080 ~d~~~l~s~~~Dg~v~vW~~~~ 1101 (1134)
...++.. ||+|+.|=.+.
T Consensus 229 --~h~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 229 --WYSLALK--NGKVIAWGSSR 246 (282)
T ss_dssp --SCEEEEE--TTEEEEESTTC
T ss_pred --CEEEEEE--CCEEEEecCCC
Confidence 2344444 99999997654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=7.5 Score=46.49 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=102.4
Q ss_pred cCCCcEEEEEEcCC----CcEEEEECCCCeeeEEe-c-----CCCCC-eEEEEeeccCCccEEEEEecCC------eEEE
Q 001160 463 HPNKQLCIVTCGDD----KMIKVWDVVAGRKQYTF-E-----GHEAP-VYSVCPHHKESIQFIFSTAIDG------KIKA 525 (1134)
Q Consensus 463 ~d~~~~~l~sg~~d----~~i~iwd~~~~~~~~~~-~-----~h~~~-v~~i~~~~~~~~~~l~s~~~d~------~i~~ 525 (1134)
.++. +++.||.+ ..+.++|+.+++....- . ..... -.+++.... ++.+++.|+.++ .+.+
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEE
Confidence 4455 56666643 46888998877654322 1 01111 122222210 336777776543 4778
Q ss_pred EEccCCCceeEecCCCC-cEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec-----CccCcceEEEEEeCC
Q 001160 526 WLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-----GFRKRSLGVVQFDTT 599 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~~ 599 (1134)
||..+..-...-..... .-.+++...+++.++.||.+... .+.+||+.+......-. .... ...++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~-~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSL-VSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCC-BSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCccc-ceeEEEEeCC
Confidence 88776443322111111 11233333478888888765433 79999999877544321 1111 2233555655
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCee-----EEEEeC-CCCCCCcceEEEccCCCEEEEEeC--------CCcEE
Q 001160 600 -RNRFLAAGD--E-----FQIKFWDMDNMNM-----LTTVDA-DGGLPASPRLRFNKEGSLLAVTTS--------DNGIK 657 (1134)
Q Consensus 600 -~~~l~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~--------dg~i~ 657 (1134)
+..++.||. + ..+.+||+.+... ...+.. ......-.+++...++++++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 556666664 2 4689999988771 222211 100011123333344777777774 34688
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
+||..+.
T Consensus 630 ~yd~~t~ 636 (695)
T 2zwa_A 630 SLDPLSE 636 (695)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8988766
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=6.6 Score=46.95 Aligned_cols=197 Identities=11% Similarity=0.092 Sum_probs=104.3
Q ss_pred cCCCEEEEEe-C----CeEEEEECCCCeEEEEe-c-------CCCCceEEEEEcCCCCcEEEEEeCCC------cEEEEE
Q 001160 850 KNDSYVMSAS-G----GKVSLFNMMTFKVMTMF-M-------SPPPAATFLAFHPQDNNIIAIGMEDS------SVQIYN 910 (1134)
Q Consensus 850 ~dg~~la~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~~~~~lasg~~dg------~i~iwd 910 (1134)
.++..++.|+ + ..+.+||..+++-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5677777776 3 35889998876433222 1 1112234445543 567888887543 588899
Q ss_pred cCCce--EEEEecCcccceEEEEEecCCCEEEEEcCCC--cEEEEeCCCcccccceeee-cCCCCCCCCcCceEEEECCC
Q 001160 911 VRVDE--VKTKLKGHQNRITGLAFSPTLNALVSSGADA--QLCMWSIDKWEKLKSRFIQ-APAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 911 ~~~~~--~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~--~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~fspd 985 (1134)
..+.+ .+..+......- +++.-.++++++.||.++ .+.+||..+..-....... .+.. ......+++..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~----r~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN----SLVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS----CCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc----ccceeEEEEeCC
Confidence 88753 222222111111 222224888888888654 6899999886532211100 0101 122234565655
Q ss_pred -CcEEEEEE---C-----CeEEEEeCCCcc------eeccCCCCCCCCCeEEEEEccCCCEEEEEecC--------CcEE
Q 001160 986 -QTHLLVVH---E-----SQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCD--------GAIG 1042 (1134)
Q Consensus 986 -g~~l~~~~---d-----~~v~vwd~~~~~------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~d--------g~I~ 1042 (1134)
++.++.|+ + +.+.+||+.... .............-.+++...++++++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 66666643 2 458899984333 11111100001111123333447888888753 4599
Q ss_pred EEeCCCccee
Q 001160 1043 VFDAETLRFR 1052 (1134)
Q Consensus 1043 vwd~~~~~~~ 1052 (1134)
+||+.+++-.
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999987654
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.00 E-value=31 Score=41.01 Aligned_cols=251 Identities=7% Similarity=0.005 Sum_probs=127.2
Q ss_pred eEEE-EecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 350 MSMD-FHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 350 ~~v~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
..+. ++||+++++++=|..| .|+++|+.+++.+.. .|. ....... + .......++|..++..++
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~------~---~~~~~~~~~W~d~~~~~~ 200 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK------L---LEGKFTYPTWINKDTIIF 200 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC------B---CCEETCCEEEEETTEEEE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc------c---cccccceeeEECCCEEEE
Confidence 3455 8999997666655544 799999999987642 111 0000000 0 000123457763333333
Q ss_pred EE----------eCCCeEEEEEcCCCCccceeeEEecccCCe-eEEEEecCCCcE---EEEEEc---CCCcEEEEECCC-
Q 001160 425 VA----------FSKHIVHLYTYNPTGELRQHLEIDAHVGGV-NDIAFAHPNKQL---CIVTCG---DDKMIKVWDVVA- 486 (1134)
Q Consensus 425 s~----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v-~~l~~s~d~~~~---~l~sg~---~d~~i~iwd~~~- 486 (1134)
+. +....|+.|.+-+...-. ...+.+....+ .....+++++.. .+++.+ ....+.+.|...
T Consensus 201 ~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (711)
T 4hvt_A 201 NLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYK 279 (711)
T ss_dssp CCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSS
T ss_pred EeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCC
Confidence 21 123568888877653221 22344433333 334556777641 344433 224566667553
Q ss_pred -CeeeEEecCCCCCeEEEEeeccCCccEEEEE----------ecCCeEEEEEccCCC-------ceeE-ec-CCCCcEEE
Q 001160 487 -GRKQYTFEGHEAPVYSVCPHHKESIQFIFST----------AIDGKIKAWLYDYLG-------SRVD-YD-APGNWCTM 546 (1134)
Q Consensus 487 -~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----------~~d~~i~~wd~~~~~-------~~~~-~~-~~~~~v~~ 546 (1134)
++. ..+...... .+..+. ++.+++.. ...+.|...|+.+.. .... +. .....+..
T Consensus 280 ~~~~-~~l~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 280 NLKL-QKINMPSDA--TLQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNF 354 (711)
T ss_dssp SCEE-EECCSCTTC--EEEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEE
T ss_pred CCcc-eEeecCCcc--eEeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEE
Confidence 432 233211111 111122 22444422 246778889987631 1222 32 23446778
Q ss_pred EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe-eEEE-ecCccCcceEEEEEeCCCCEEE-EEe---CCCeEEEEECCCC
Q 001160 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGA-IKRT-YSGFRKRSLGVVQFDTTRNRFL-AAG---DEFQIKFWDMDNM 620 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~-~~~---~dg~i~iwd~~~~ 620 (1134)
+.+..+ ..+++... ++...+.++++.++. .... +.....+.+......+++..++ +.+ .-+.++.+|+. +
T Consensus 355 ~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~ 430 (711)
T 4hvt_A 355 ISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-H 430 (711)
T ss_dssp EEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-S
T ss_pred EEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-C
Confidence 888876 44444433 345578899887775 2333 3222222566666667765444 333 45778888887 4
Q ss_pred e
Q 001160 621 N 621 (1134)
Q Consensus 621 ~ 621 (1134)
+
T Consensus 431 ~ 431 (711)
T 4hvt_A 431 E 431 (711)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.70 E-value=15 Score=39.50 Aligned_cols=171 Identities=10% Similarity=0.122 Sum_probs=96.0
Q ss_pred eEEEEECCCC--eEEEEecC------CCCceEEEEEc---CC--C-CcEEEEEe-CCCcEEEEEcCCceEEEEec-----
Q 001160 862 KVSLFNMMTF--KVMTMFMS------PPPAATFLAFH---PQ--D-NNIIAIGM-EDSSVQIYNVRVDEVKTKLK----- 921 (1134)
Q Consensus 862 ~i~vwd~~~~--~~~~~~~~------~~~~i~~l~~s---~~--~-~~~lasg~-~dg~i~iwd~~~~~~~~~l~----- 921 (1134)
+|.+||+.+. +.++++.- .......+++. |. + +.++..+. ..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 88777542 23457788887 21 1 34444443 46789999999887554441
Q ss_pred ---------Cc----ccceEEEEEecC----CCEEEEEcCCCcEEEEeCCCccccccee---eecCCCCCCCCcCceEEE
Q 001160 922 ---------GH----QNRITGLAFSPT----LNALVSSGADAQLCMWSIDKWEKLKSRF---IQAPAGRQSPLVGETKVQ 981 (1134)
Q Consensus 922 ---------~h----~~~i~~l~~s~d----~~~l~s~~~D~~i~iWd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~ 981 (1134)
|. ...|..|++||+ ++.|.-....+ -++|.+.+.-...... ++. .|...+...-...+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEE
Confidence 11 246889999998 77777665544 3556555422111000 000 01110001223456
Q ss_pred EC-CCCcEEEE-EECCeEEEEeCCC-c----ceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 982 FH-NDQTHLLV-VHESQISVYDSKL-E----CSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 982 fs-pdg~~l~~-~~d~~v~vwd~~~-~----~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+. .+|.++++ ...+.|..|+..+ . ....+.... .-.-...+++.++|.+.++.
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-CccccCeEEECCCCeEEEEE
Confidence 65 56776666 4678999999865 2 222222211 24456777777777655544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.22 E-value=32 Score=38.43 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=22.7
Q ss_pred ceEEEEEeCCCC-EEEEEeCCCeEEEEECC
Q 001160 590 SLGVVQFDTTRN-RFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 590 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 618 (1134)
.-..++|.|+|. .++++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 456799999996 56666788999999754
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.55 E-value=37 Score=40.32 Aligned_cols=244 Identities=10% Similarity=0.047 Sum_probs=120.8
Q ss_pred EEEE-EcCCCCEEEEEe-----CCCeEEEEEcCCCCccceeeEEecccC------CeeEEEEecCCCcEEEEEE------
Q 001160 412 NRCV-WGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVG------GVNDIAFAHPNKQLCIVTC------ 473 (1134)
Q Consensus 412 ~~i~-~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~s~d~~~~~l~sg------ 473 (1134)
..+. ++||+++++.+- .-..++++|+.+++.+..... ..-+. ....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~ 208 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNE 208 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCC
Confidence 3444 889999888752 223799999999865532111 00000 113458874443 34431
Q ss_pred ----cCCCcEEEEECCCCe--eeEEecCCCCCeE-EEEeeccCCcc---EEEEEecC---CeEEEEEccCCCc-eeEecC
Q 001160 474 ----GDDKMIKVWDVVAGR--KQYTFEGHEAPVY-SVCPHHKESIQ---FIFSTAID---GKIKAWLYDYLGS-RVDYDA 539 (1134)
Q Consensus 474 ----~~d~~i~iwd~~~~~--~~~~~~~h~~~v~-~i~~~~~~~~~---~l~s~~~d---~~i~~wd~~~~~~-~~~~~~ 539 (1134)
+....|+.|.+-+.. -...+.+....+. +...+.++... .+++.+.+ ..+.+.|...... ...+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 123578899876642 2233444333332 23333333222 34544422 3455556553222 233322
Q ss_pred CCCcEEEEEECCCCCEEEEEeeCC------CCCCcEEEEeCCCCe-------eEEE-ecCccCcceEEEEEeCCCCEEEE
Q 001160 540 PGNWCTMMAYSADGTRLFSCGTSK------EGESHLVEWNESEGA-------IKRT-YSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 540 ~~~~v~~~~~s~~~~~l~~~~~~~------~~~~~i~~wd~~~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
.... .+..+.++.+++....+. -..+.|...++.++. ..+. +....+..+..+.+..+ ..+++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 123344555555332110 135678889887642 1222 44434446778888865 46666
Q ss_pred EeCCCe--EEEEECCCCe-eEEE-EeCCCCCCCcceEEEccCCCE-EEEEeC---CCcEEEEECC
Q 001160 606 AGDEFQ--IKFWDMDNMN-MLTT-VDADGGLPASPRLRFNKEGSL-LAVTTS---DNGIKILANS 662 (1134)
Q Consensus 606 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~-l~~~~~---dg~i~iw~~~ 662 (1134)
...++. ++++++.+++ .... +..... ..+.....++++.. +++.++ -+.+..+|..
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666664 6677766664 2233 333221 23555556666543 343333 3456666654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=85.77 E-value=35 Score=35.13 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=109.4
Q ss_pred CeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 348 NVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
.|..++-... +.++. . ||.|..|-......+-. + ......|..++-..+-. ++. .
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEE-EEE-E
Confidence 4555554433 23443 4 88888887655433321 0 01123566666654432 333 4
Q ss_pred CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec
Q 001160 428 SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507 (1134)
Q Consensus 428 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~ 507 (1134)
||.|..|-......+.... .-...|..++...+-. ++ -. |+.|+.|-....-.+..-......|..++.-.
T Consensus 80 -~G~v~~wG~n~~Gqlg~P~---~~~~~v~~ia~G~~hs---~a-l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~ 150 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVPA---EARSGVDAIAAGAWAS---YA-LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV 150 (282)
T ss_dssp -TTEEEEEECCTTSTTCCCG---GGSSSEEEEEEETTEE---EE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS
T ss_pred -CCEEEEeeCCCCCCCCCCc---ccCCCeEEEECcCCEE---EE-Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc
Confidence 8999999876544332111 1134677777654432 33 33 89999997654221111111234566665422
Q ss_pred cCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 508 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
. ..++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-......+.. ....
T Consensus 151 ~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~~ 217 (282)
T 3qhy_B 151 Y---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTEA 217 (282)
T ss_dssp S---EEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGGG
T ss_pred C---EEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Cccc
Confidence 1 3333 33 79999997654333221111123566665544332222 2 56688886543211110 0011
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 001160 588 KRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 588 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 619 (1134)
...|..++..... .++ -. ||.|+.|-...
T Consensus 218 ~~~v~~i~~G~~h-~~a-l~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 218 LSGVSAIASGEWY-SLA-LK-NGKVIAWGSSR 246 (282)
T ss_dssp GSSCCEEEECSSC-EEE-EE-TTEEEEESTTC
T ss_pred CCCceEEEcCCCE-EEE-EE-CCEEEEecCCC
Confidence 1145566655433 223 33 89999997654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=59 Score=34.93 Aligned_cols=167 Identities=11% Similarity=0.097 Sum_probs=92.3
Q ss_pred cEEEEECCCC--eeeEEecC------CCCCeEEEEee-cc----CCccE-EEEEecCCeEEEEEccCCCceeEec----C
Q 001160 478 MIKVWDVVAG--RKQYTFEG------HEAPVYSVCPH-HK----ESIQF-IFSTAIDGKIKAWLYDYLGSRVDYD----A 539 (1134)
Q Consensus 478 ~i~iwd~~~~--~~~~~~~~------h~~~v~~i~~~-~~----~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~----~ 539 (1134)
.|.+||+.++ +.++++.- ....+..+.+. .. .++.+ .++=+....|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5678888888 77776542 23457788877 21 11233 3444457889999998766544331 1
Q ss_pred C--------------CCcEEEEEECCC----CCEEEEEeeCCCCCCcEEEEeCC-----CC---eeEEEecCccC--cce
Q 001160 540 P--------------GNWCTMMAYSAD----GTRLFSCGTSKEGESHLVEWNES-----EG---AIKRTYSGFRK--RSL 591 (1134)
Q Consensus 540 ~--------------~~~v~~~~~s~~----~~~l~~~~~~~~~~~~i~~wd~~-----~~---~~~~~~~~~~~--~~v 591 (1134)
. ...+..++++|+ ++.|+...... -++|.+. .. ..++.+ +... ..-
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~ 277 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDA 277 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEe-eecCCCCCc
Confidence 1 136788999998 77887665311 2333332 11 111111 1111 123
Q ss_pred EEEEEe-CCCCEEEEEeCCCeEEEEECCC-C---eeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 592 GVVQFD-TTRNRFLAAGDEFQIKFWDMDN-M---NMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 592 ~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
...++. .+|..+++--+...|..|+..+ . +....+...........+.+..+|.+.+..
T Consensus 278 ~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 278 IALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 345665 5676666666889999999876 1 223333222233455666666555544433
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.96 E-value=3.4 Score=51.31 Aligned_cols=82 Identities=20% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE---eCCCc
Q 001160 1017 PAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG---MSDGA 1093 (1134)
Q Consensus 1017 ~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~---~~Dg~ 1093 (1134)
...+.+++..++..++++.+.|+++|+|++.+|+++.+.......+.. ..... ....|..+.++.+- ..+|.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~---~~~~~--~~~~~~~~~~i~v~~s~~~~g~ 309 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPL---QSFPY--LTSDHTTNSFIALYYPDNSHGS 309 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCS---CCCCC--EEECSSSTTEEEEEECCSSSCE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCcc---ccccc--cccCCCcccEEEEEEcCCCCcE
Confidence 346778888889999999999999999999999999887644322221 11111 11223333444332 24577
Q ss_pred EEEEecCCCc
Q 001160 1094 VHVVEPSDAE 1103 (1134)
Q Consensus 1094 v~vW~~~~~~ 1103 (1134)
.++|.+....
T Consensus 310 F~~~~~~~~~ 319 (950)
T 4gq2_M 310 FSIYKLNANA 319 (950)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEecCC
Confidence 8888765433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1134 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 1e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1jofa_ | 365 | b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactoniz | 0.002 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.9 bits (198), Expect = 7e-17
Identities = 44/339 (12%), Positives = 100/339 (29%), Gaps = 32/339 (9%)
Query: 302 DSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLN-QGSNVMSMDFHPQQQT 360
+++ L +IR + T N+ + RTL + + +M + +
Sbjct: 10 EAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRL 69
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420
L+ + G + +W+ + ++ P + + + + + ++
Sbjct: 70 -LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCI---------- 470
V S+ + Y +I G + Q
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 471 -----------VTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI 519
V+ D K+WDV G + TF GHE+ + ++C + +
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG--NAFATGSD 246
Query: 520 DGKIKAWLYDYLGSRVDYDAPGNWC--TMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
D + + + Y C T +++S G L + + + W+ +
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKA 302
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWD 616
+G R + + +K W+
Sbjct: 303 DRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.9 bits (190), Expect = 8e-16
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 792 SNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKN 851
+ V L T SG A+ +LW G E I N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMC----RQTFTGHESDINAICFFPN 237
Query: 852 DSYVMSASGG---KVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQI 908
+ + S ++ + + T ++F ++ G +D + +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296
Query: 909 YNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++ + L GH NR++ L + A+ + D+ L +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 7e-12
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925
+ T + D + G D+S ++++VR + GH++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985
I + F P NA + DA ++ + ++L + G T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKS 281
Query: 986 QTHLLVVHE-SQISVYDSKLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAI 1041
LL ++ +V+D + L +S + DG+ V G D +
Sbjct: 282 GRLLLAGYDDFNCNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 1042 GVFD 1045
+++
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 43/283 (15%)
Query: 430 HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489
I + ++R + H+ + + + + +L +V+ D + +WD K
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW-GTDSRL-LVSASQDGKLIIWDSYTTNK 89
Query: 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549
+ + V + + I RV + G+ +
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 550 SADGTRLFSCGT---------------------------------------SKEGESHLV 570
+ S ++
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ EG ++T++G + + + F N F D+ + +D+ L T D
Sbjct: 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + F+K G LL D + +L G
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAG 310
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQL 948
D + I V +R + L+GH +I + + LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 949 CMWSIDKWEKLKS 961
+W K+ +
Sbjct: 80 IIWDSYTTNKVHA 92
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.6 bits (192), Expect = 3e-16
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 8/192 (4%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWDISA 394
T V+T + M Q T++ +N + +W V ++E A + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 395 ASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVG 454
+ P + A G G L + ++ + TG L H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLV--GHDN 248
Query: 455 GVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFI 514
V + F K I++C DDK ++VWD R T HE V S+ H ++
Sbjct: 249 WVRGVLFHSGGK--FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA--PYV 304
Query: 515 FSTAIDGKIKAW 526
+ ++D +K W
Sbjct: 305 VTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.5 bits (184), Expect = 4e-15
Identities = 37/229 (16%), Positives = 79/229 (34%), Gaps = 13/229 (5%)
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
+ P + L H V + F HP + +V+ +D IKVWD G + T +G
Sbjct: 2 EWIPRPPEKYALS--GHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKG 57
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR 555
H V + H + S D IK W + + + ++ +G
Sbjct: 58 HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFW 615
+ S K + V+ +T++G R+ +V+ + + ++ ++ W
Sbjct: 116 IVSASRDKTIKMWEVQTGY----CVKTFTGHREWV-RMVRPNQDGTLIASCSNDQTVRVW 170
Query: 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664
+ + + + + E S +++ + + G
Sbjct: 171 VVATKECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 7e-15
Identities = 55/328 (16%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
S V + FHP +++ + I +W+ + + L
Sbjct: 18 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKG 57
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
SV + G + + + + + + PN
Sbjct: 58 HTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
IV+ DK IK+W+V G TF GH V V P+ I S + D ++ W
Sbjct: 114 D-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG--TLIASCSNDQTVRVW 170
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT----------------SKEGESHLV 570
+ + + + ++++ + + S + +
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 571 EWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG 630
W+ S G T G GV F + L+ D+ ++ WD N + T++A
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 631 GLPASPRLRFNKEGSLLAVTTSDNGIKI 658
S L F+K + + D +K+
Sbjct: 290 HFVTS--LDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.1 bits (162), Expect = 2e-12
Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 2/108 (1%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED 903
K +++S S + ++++ T + + + FH I +D
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADD 268
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
++++++ + L H++ +T L F T +V+ D + +W
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 24/178 (13%), Positives = 61/178 (34%), Gaps = 29/178 (16%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQ----------- 892
+ +++ + + S S V ++ + T + +++ P+
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207
Query: 893 --------DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
+ G D ++++++V L GH N + G+ F ++S
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 267
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
D L +W +K+ + A T + FH +++ + + V++
Sbjct: 268 DKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 2e-07
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 12/173 (6%)
Query: 315 SDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLW 374
D A ++ V TK L + +V+ + + + G +
Sbjct: 153 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK 212
Query: 375 EVGSRERL----AHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKH 430
L K K+WD+S M L L V ++ G +
Sbjct: 213 SGKPGPFLLSGSRDKTIKMWDVST-GMCLMT--LVGHDNWVRGVLFHSGGKFILSCADDK 269
Query: 431 IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ ++ Y + ++AH V + F H +VT D+ +KVW+
Sbjct: 270 TLRVWDY-KNKRCMK--TLNAHEHFVTSLDF-HKTAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 6e-06
Identities = 32/290 (11%), Positives = 75/290 (25%), Gaps = 28/290 (9%)
Query: 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFM 878
++W +G K +S I+ + + S S M
Sbjct: 42 KVWDYETGDF----ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97
Query: 879 SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNA 938
+ + I D +++++ V+ GH+ + + +
Sbjct: 98 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL 157
Query: 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQIS 998
+ S D + +W + E E+ ++ T +
Sbjct: 158 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217
Query: 999 VYDS--------KLECSRSWSPKDALPA---PISSAIYSCDGLLVYAGFCDGAIGVFDAE 1047
+ K+ + L + ++ G + + D + V+D +
Sbjct: 218 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 1048 TLRFRCRI-GPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1096
R + ++ + TA + G D V V
Sbjct: 278 NKRCMKTLNAHEHFVTSLDFHKTA------------PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.0 bits (110), Expect = 7e-06
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
K L GH++ +T + F P + +VS+ DA + +W + + ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 1e-04
Identities = 23/171 (13%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGA 944
T + FHP +++ ED+++++++ + + LKGH + + ++F +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK------- 72
Query: 945 DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKL 1004
L S D KL +V ++ ++
Sbjct: 73 --LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 1005 ECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRI 1055
+ + + DG L+ + D + V+ T + +
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.8 bits (169), Expect = 6e-13
Identities = 41/349 (11%), Positives = 106/349 (30%), Gaps = 28/349 (8%)
Query: 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
N ++ + ++L+ S V + F + L G N ++ V S L +
Sbjct: 44 NPALPREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRV-SDGSLVARLS 100
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
+ L + + + + + PDG L ++ ++ +
Sbjct: 101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL- 159
Query: 448 EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH 507
+ + + +V+ D+ +++WD+ G+ T +
Sbjct: 160 ----QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 215
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPG-------NWCTMMAYSADGTRLFSCG 560
++I + ++D ++ W + D+ + + ++ DG + S
Sbjct: 216 DG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
Query: 561 TSK-------EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIK 613
+ + ++ + K + V L+ + +
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 614 FWDMDNMNMLTTVDADGG----LPASPRLRFNKEGSLLAVTTSDNGIKI 658
FWD + N L + + + E ++ A + D +I
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 1e-12
Identities = 31/215 (14%), Positives = 62/215 (28%), Gaps = 27/215 (12%)
Query: 325 HTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH 384
V D T TL+ V ++ P + G+ + +W+ + +
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ + V V+ DG + V L+
Sbjct: 243 LDSENESGTGHKDS------------VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 445 QHLEIDAHV---------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495
++ V +A ++ I++ D+ + WD +G +G
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 496 HEAPVYSVCPHHKESI----QFIFSTAIDGKIKAW 526
H V SV + S+ + + D K + W
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.9 bits (151), Expect = 8e-11
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 845 CIALSKNDSYVMSASG-GKVSLFNMMTFKVMTMFMSPPPAA------------TFLAFHP 891
+ +++ V+S S V L+N+ + +P +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 892 QDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA------FSPTLNALVSSGAD 945
++ I G +D V ++ + L+GH+N + +A P N + D
Sbjct: 319 -NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 946 AQLCMWSIDK 955
+ +W K
Sbjct: 378 CKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 1e-08
Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 26/264 (9%)
Query: 807 NPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLF 866
+P GK A A + + E+ + + ++S SG +
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV-------RVDEVKTK 919
+ ++ +S T +A P D IA G D +V++++ R+D
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGE-- 977
GH++ + + F+ ++VS D + +W++ + +G
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 978 --TKVQFHNDQTHLLVVHE-SQISVYDSKLECSRSWSPKDALP---------APISSAIY 1025
V + ++L + + +D +S +P L A + +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWD-----KKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 1026 SCDGLLVYAGFCDGAIGVFDAETL 1049
+ + G D ++ + +
Sbjct: 365 GPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 17/143 (11%)
Query: 347 SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406
+V S+ F Q+ ++ G+ + LW + + + +
Sbjct: 255 DSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD---- 309
Query: 407 AAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFA---- 462
V + + V + +G L+ H V +A A
Sbjct: 310 ---FVLSVATTQNDEYILSGSKDRGVLFWDKK-SGNPLLMLQ--GHRNSVISVAVANGSS 363
Query: 463 -HPNKQLCIVTCGDDKMIKVWDV 484
P + T D ++W
Sbjct: 364 LGPEYNV-FATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 38/356 (10%), Positives = 83/356 (23%), Gaps = 46/356 (12%)
Query: 344 NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNAL 403
++ +D Q L L+ + D+ L +L
Sbjct: 13 SKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVE-----LHKSL 59
Query: 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIV--HLYTYNPTGELRQH------------LEI 449
+ + V + DG L +K + + L
Sbjct: 60 DHTSV--VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117
Query: 450 DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
+ + + F P+ + D + ++ +
Sbjct: 118 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIE---NRKIVMILQGHEQDIYSLDYFP 173
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHL 569
S + S + D ++ W + T+ DG + + +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 570 VEWNESEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD 627
E + V V F ++ + +K W++ N N +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 628 ADGGLPASP----------RLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEG 673
+ + + + D G+ G L ML+G
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQG 348
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 7e-04
Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 30/325 (9%)
Query: 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGG 861
Q + L+ P + ++++S C+ S + Y+ +
Sbjct: 26 QSVPDALKKQTNDYYI--LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK 83
Query: 862 KVSLFNMMTFKVMTMFMSPPPAA------------------TFLAFHPQDNNIIAIGMED 903
++ + ++ A + F P D +A G ED
Sbjct: 84 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAED 142
Query: 904 SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRF 963
++I+++ ++ L+GH+ I L + P+ + LVS D + +W + + +
Sbjct: 143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 202
Query: 964 IQAPAGRQ--SPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPIS 1021
I+ SP G+ D+ + E+ V E KD +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD----SVY 258
Query: 1022 SAIYSCDGLLVYAGFCDGAIGVFDAETLRFR--CRIGPSAYIPTYAVSNTAHPLVIAPHP 1079
S +++ DG V +G D ++ +++ + + + S + + L +A
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Query: 1080 SEPNQIALGMSDGAVHVVEPSDAEL 1104
++ I G D V +
Sbjct: 319 ND-EYILSGSKDRGVLFWDKKSGNP 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 4e-12
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 885 TFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQNRITGLAFSPTLNALVSS 942
+ A++ D IAI + V IY ++ +LK H ++TG+ ++P N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 943 GADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS 1002
G D +W++ + I + + + I ++
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG---SRVISICYFEQ 126
Query: 1003 KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAY 1060
+ + K + + + S + + +L+ AG CD +F A R P+ +
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 46/278 (16%), Positives = 83/278 (29%), Gaps = 23/278 (8%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ W D + + + H VH+Y + + Q E+ H G V + +A + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
VTCG D+ VW + + T + C + + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 530 YLGSRV--------------DYDAPGNWCTMMAYSADGT-RLFSCGTSKEGESHLVEWNE 574
D N + A S D R+FS + E
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 575 SEGAIKRTYSGFRKRSLGV--VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL 632
S+ V V F +R + + D D + T+ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 633 PASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRM 670
+ F E SL+A D + L
Sbjct: 245 -PLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSF 280
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.8 bits (91), Expect = 0.001
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ S V + LF + F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSP----TLNALVSSGADAQLCMWSIDKWEKL 959
H+N ++ ++ + ++G D + +W + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 450 DAHVGGVNDIAFAHPNKQLC--IVTCGDDKMIKVWDV 484
H V+ I+ K C T G D + +WDV
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.5 bits (155), Expect = 2e-11
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 20/219 (9%)
Query: 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAP 499
GEL+ + H V I IV+ DD +KVW V G+ T GH
Sbjct: 3 RGELKSPKVLKGHDDHV--ITCLQFCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559
V+S D I + D + + T+ +++ +
Sbjct: 60 VWSSQMR-------------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106
Query: 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
S + + V R ++ +F +K WD +
Sbjct: 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166
Query: 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
L T+ + +G + + D I++
Sbjct: 167 ETCLHTLQGH----TNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 48/393 (12%), Positives = 112/393 (28%), Gaps = 62/393 (15%)
Query: 572 WNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG 631
W E + G + +QF NR ++ D+ +K W L T+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVG--- 55
Query: 632 LPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPL 691
G + + DN I + +++ G + + + L
Sbjct: 56 ----------HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105
Query: 692 TINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWR 751
VS + TL D +G + R V R +
Sbjct: 106 H-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160
Query: 752 IPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGK 811
+ D + + L+ G+ +++ + + ++W +
Sbjct: 161 VWDPETETCLHTLQ------GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE--------- 205
Query: 812 ATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTF 871
N I+ + + + L ++ V + V ++++ T
Sbjct: 206 -----------------TGNCIHTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTG 247
Query: 872 KVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK-----GHQNR 926
+ + P + + + N + +D +V++++++ E L G
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 927 ITGLAFSPTLNALVSSGAD----AQLCMWSIDK 955
+ + S T + +L + D
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (116), Expect = 1e-06
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 15/157 (9%)
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D I+VWDV G +T GH++ + + S D +K W
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIK 245
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKR 589
P + + S +G L W+ G R
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302
Query: 590 SLGV----VQFDTTRNRFLAAGD----EFQIKFWDMD 618
G ++ T+ E ++ D D
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 14/188 (7%)
Query: 855 VMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD 914
V A V +++ T + L F D + G D+S+++++V
Sbjct: 151 VSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETG 207
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL 974
L GHQ+ +G+ + LVS AD+ + +W I + L++
Sbjct: 208 NCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKH------ 259
Query: 975 VGETKVQFHNDQTHLLVVHESQISVYD-SKLECSRSWSPKDALP--APISSAIYSCDGLL 1031
N + + + ++D E R+ ++ + S L+
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319
Query: 1032 VYAGFCDG 1039
G +G
Sbjct: 320 CAVGSRNG 327
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 7e-05
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 17/171 (9%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ DG+ + + ++ + H + + N
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL---TGHQSLTSGMEL-KDN---I 229
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW--- 526
+V+ D +K+WD+ G+ T +G +V F+ +++ DG +K W
Sbjct: 230 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLK 288
Query: 527 ----LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573
+ + + ++ G + S + E+ L+ +
Sbjct: 289 TGEFIRNLV--TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 29/209 (13%)
Query: 888 AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQ 947
N I G +D+++++++ + L GH + +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII---------- 70
Query: 948 LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECS 1007
S D+ K+ + + +++ + ++ + V+D E
Sbjct: 71 -ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI--ETG 127
Query: 1008 RSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVS 1067
+ A + Y ++ A D + V+D ET +
Sbjct: 128 QCLHVLMGHVAAVRCVQYDGRRVVSGA--YDFMVKVWDPETETCLHTL------------ 173
Query: 1068 NTAHPLVIAPHPSEPNQIALGMSDGAVHV 1096
H + + + G D ++ V
Sbjct: 174 -QGHTNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 8e-10
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 452 HVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK-QYTFEGHEAPVYSVCPHHKES 510
H ++ I + + I+ G + ++++ +G+ ++SV K
Sbjct: 280 HHTNLSAITTFYVSDN--ILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 511 IQFIFSTAIDGKIKAWLYDY 530
+ + DG+ + D+
Sbjct: 336 -TLVAAVEKDGQSFLEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.7 bits (127), Expect = 7e-08
Identities = 46/376 (12%), Positives = 105/376 (27%), Gaps = 28/376 (7%)
Query: 580 KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639
+ T G + +QF+ N + D+ I+ +D N L +
Sbjct: 5 RTTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSG----------- 51
Query: 640 FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699
+G + A+ + GI + ++D + ++ +
Sbjct: 52 --HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 109
Query: 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759
V+ + TL P S+ G LV P + + + S
Sbjct: 110 YIVTGSRDNTLHVWKL-PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQ 819
+ + S + +V + L +L+ ++ ++ +R S +
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
Query: 820 LWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS 879
+ + +S + F
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSI---------RGWDANDYSRKFSY 279
Query: 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDE-VKTKLKGHQNRITGLAFSPTLNA 938
+ + +NI+ G ++ IYN+R + V + ++I + F
Sbjct: 280 HHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TL 337
Query: 939 LVSSGADAQLCMWSID 954
+ + D Q + +D
Sbjct: 338 VAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
Q + H+ V N ++T DDKMI+V+D + + GH+ V+++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 505 PHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
H + S + D ++ W ++ + + + S++
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 565 GESHLVEWNESEGAIKRTYSGFRKRSL 591
H+ W + + + L
Sbjct: 118 NTLHV--WKLPKESSVPDHGEEHDYPL 142
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
++N + G +D +++Y+ + +L GH + L ++ LVS D + +W
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 953 IDKW 956
I K
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-04
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 9/190 (4%)
Query: 917 KTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVG 976
+T L+GH + N +++ D + ++ + L + G G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ--LSGHDG------G 55
Query: 977 ETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGF 1036
+++ + + + + V+D K C + + + G
Sbjct: 56 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 115
Query: 1037 CDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1096
D + V+ G P + +P + + G + V
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175
Query: 1097 VEPSDAELKW 1106
D L
Sbjct: 176 SGSYDNTLIV 185
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
SV C+ + + ++ +Y + L H GGV + +AH
Sbjct: 14 SVITCLQ-FEDNYVITGADDKMIRVYDSI-NKKFLLQLS--GHDGGVWALKYAHGG---I 66
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
+V+ D+ ++VWD+ G + FEGH + V + ++I++I + + D + W
Sbjct: 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126
Query: 530 YLGSRVDYDAPGNWCTMM 547
S D+ ++ +
Sbjct: 127 KESSVPDHGEEHDYPLVF 144
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 3e-09
Identities = 30/216 (13%), Positives = 57/216 (26%), Gaps = 16/216 (7%)
Query: 444 RQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502
R L+ I + + Q IV+ D IK+WD + GH V
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
Query: 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562
+ + I + + +A + ++ S
Sbjct: 61 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV- 119
Query: 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM 622
W+ + V D ++A + IK W+
Sbjct: 120 ---------WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 623 LTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI 658
+ T++ L+ +SDN I++
Sbjct: 171 VRTLNGHK----RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 27/151 (17%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 385 KPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELR 444
+ KVW+ S + ++ S + + L+ LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 445 QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY---------TFEG 495
G ++ IV+ D IKVWD+VA T
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK- 919
+ L+++ + + + DN I G D ++++++
Sbjct: 198 NTIRLWDIECGACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 920 --------LKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951
L H R+ L F +VSS D + +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 25/204 (12%)
Query: 893 DNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952
D+ I G+ D++++I++ E K L GH + L + + SS + ++ +
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 953 IDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSP 1012
+ + N+ + + I+V+D +
Sbjct: 84 TGEMLNTLIHHCE-----------AVLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDITLR 131
Query: 1013 KDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHP 1072
+ + + + D + + D I V++ T F + H
Sbjct: 132 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL-------------NGHK 178
Query: 1073 LVIAPHPSEPNQIALGMSDGAVHV 1096
IA + G SD + +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 388 KVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHL 447
++WDI + L D + + ++ + R
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 448 E------IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483
+ H G V + F + IV+ D I +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 441 GELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF-EGHEAP 499
G + Q H + ++ + + + + + I WD+ G F + H
Sbjct: 2 GSIDQVRY--GHNKAITALSS-SADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATM 57
Query: 500 VYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSA 551
+ + +F+ + D +K G + A
Sbjct: 58 ITGIKTTS---KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 3e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 915 EVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKS 961
+ GH IT L+ S L S+ A+ + W I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 1e-04
Identities = 26/323 (8%), Positives = 73/323 (22%), Gaps = 33/323 (10%)
Query: 338 TVVRTLNQG--SNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
++ + G + ++ +T L G I+ W++ +
Sbjct: 3 SIDQVR-YGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNR------------ 48
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
+ A + G + V++ H+ G + A+
Sbjct: 49 ------VFPDVHATMITGIKTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLS 99
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIF 515
+ A V + + + + ++ +
Sbjct: 100 SQPLGLAVSADGDIAVAACYKHIAIYSHG---KLTEVPISYNSSCVALSNDKQFVAVGGQ 156
Query: 516 STAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575
+ + + + + A F T + + +
Sbjct: 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN-----GAFLVATDQSRKVIPYSVANN 211
Query: 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
F + V + R + + W+M+ + + +S
Sbjct: 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS 271
Query: 636 PRLRFNKEGSLLAVTTSDNGIKI 658
+ + D+ IK
Sbjct: 272 VNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
W PD + L + V ++ N + AH + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMN-KPSDHPIIIKGAHAMSSVNSVIWLNETTI--V 284
Query: 472 TCGDDKMIKVWDV 484
+ G D IK W+V
Sbjct: 285 SAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 17/117 (14%), Positives = 25/117 (21%), Gaps = 5/117 (4%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
V + VA + + H P+
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA- 240
Query: 472 TCGDDKMIKVWDVVAG--RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T D + VW++ H + E I S D IK W
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 8e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 863 VSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVR--VDEVKTKL 920
T + A DN +A G D+SV ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 921 KGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
H +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 6/109 (5%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
+ ++ + L F +D+
Sbjct: 229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDN 287
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + + + + S +V+ D + ++ +
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.7 bits (127), Expect = 5e-08
Identities = 35/321 (10%), Positives = 81/321 (25%), Gaps = 35/321 (10%)
Query: 340 VRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM-- 397
+ TLN G V ++ + + G + + KVWDIS
Sbjct: 45 INTLNHGEVVCAVTISNPTRHVY-------------TGGKGCV-----KVWDISHPGNKS 86
Query: 398 PLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVN 457
P+ + + C PDG L V + ++ + +
Sbjct: 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
+ G+ + + + + + C +++
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLH-----NQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEG 577
+D +++W +D + Y G L S E V +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 578 AIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR 637
++F F++ G + + W + + +
Sbjct: 261 LHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS--- 311
Query: 638 LRFNKEGSLLAVTTSDNGIKI 658
+ + + + D +
Sbjct: 312 CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 1e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
+ + P G L V V + N ++ H V + FA+ K
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCGKWF- 280
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
V+ G D ++ W G + + V S + ++I + + D K +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 8e-06
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ G ++++ + P G + V + + IVT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRT-PYGASIFQSK---ESSSVLSCDI-SVDDKY-IVTG 324
Query: 474 GDDKMIKVWDVV 485
DK V++V+
Sbjct: 325 SGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 1e-05
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 11/137 (8%)
Query: 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK 477
DG M V F + L H V + ++P + + T G
Sbjct: 19 ADGQMQPVPFPPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHV--YTGGKGC 73
Query: 478 MIKVWDVVAGR-----KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLG 532
+KVWD+ Q + + S + A I
Sbjct: 74 -VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132
Query: 533 SRVDYDAPGNWCTMMAY 549
+ + + C +A
Sbjct: 133 IKAELTSSAPACYALAI 149
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 6e-05
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 845 CIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDS 904
CI +S + + + + + L + P + +S
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMES 245
Query: 905 SVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFI 964
S K +L H++ + L F+ VS+G D L W +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--- 302
Query: 965 QAPAGRQSPLVGETKVQFHNDQTHLLVV-HESQISVYD 1001
+ S + D +++ + + +VY+
Sbjct: 303 ---SKESSSV---LSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 9/244 (3%)
Query: 445 QHLEI-DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE---GHEAPV 500
Q ++I A ++DI P+K L ++ D + V+ K ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKI-IPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560
+Q T +K L + + N +L +
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 561 TSKEGESHLVEWNESEGAIKRTYSG-FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN 619
E + + K + DT +R + + Q++++ +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 620 MNMLTTVDADGGLPASPRLR--FNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMD 677
+ GL R KE A ++ D + + D + A
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 678 KNRC 681
+R
Sbjct: 240 CHRL 243
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 26/325 (8%), Positives = 75/325 (23%), Gaps = 35/325 (10%)
Query: 349 VMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAA 408
+ + P + +L + S + V+ + +
Sbjct: 14 ISDIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYK 56
Query: 409 ISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL 468
+ C + + + + L Q L + G+ I +K +
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 469 CIVTCGDDKMIKVWDVVAGRKQYT-FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWL 527
G ++I + G + V + + + + +++ +
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 528 YDYLGSRVDYDAPGNWCTMM----AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY 583
+ + + + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 584 SGFRKRSLGV----------VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
+ R ++F AG + I W++ +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFN 293
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKI 658
++ ++L + TSD+ K
Sbjct: 294 EDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 9e-06
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)
Query: 411 VNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL------------RQHLEIDAHVGGVND 458
+ + + + V + ++ G+ R +L+ VN
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 459 IAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFST 517
I F+ +K L G D +I W++ +K F +E V + +
Sbjct: 257 IEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310
Query: 518 AIDGKIKAW 526
D K
Sbjct: 311 TSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 887 LAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK---GHQNRITGLAFSPTLNALVSSG 943
+ P +++ I D S+ +Y + L +++ + F + + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 944 ADAQLCMWSIDKW 956
+
Sbjct: 76 TVQGEILKVDLIG 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 23/265 (8%), Positives = 59/265 (22%), Gaps = 16/265 (6%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
++ P +L + + +Y ++ + L+ + + F
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 470 IVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYD 529
V +++KV + + Q + + S ++
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 530 YLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT---YSGF 586
G + N + S S + + SG
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPR--------- 637
+ + V + + + + ++ D+
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 638 ----LRFNKEGSLLAVTTSDNGIKI 658
+ F+ L SD I
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 920 LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETK 979
+ ++ I+ + P+ + L+ + D L ++ D K + + PL
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD--LLQSLRYKHPL---LC 61
Query: 980 VQFHNDQTHLLV 991
F ++ +
Sbjct: 62 CNFIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.002
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 33/179 (18%)
Query: 865 LFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------------- 911
L +A P++ A D V +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 912 --RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAG 969
R + K + + FSP L ++G+D + W++ +K+K+ F +
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNED 295
Query: 970 RQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCD 1028
+ V+ L + + D+ ++ + D +S+IY
Sbjct: 296 --------SVVKIACSDNILCLA-----TSDDT----FKTNAAIDQTIELNASSIYIIF 337
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.6 bits (129), Expect = 2e-08
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 866 FNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKGHQ 924
+S PA + +++A G D+++ IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 925 NRITGLAFSPTLNALVSSGADAQLCMWSI 953
+ + L + + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 414 CVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC 473
+ ++ + +Y+ ++ + L AH GVN++ + P+ +V+
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275
Query: 474 GDDKMIKVWDVV 485
G D IK W+VV
Sbjct: 276 GADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 469 CIVTCGDDKMIKVWDVVAGRKQY-TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ T D I ++ V K H+ V ++ + + S+ D IK W
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST---LVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 4e-05
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHK 508
I H G+ + +P +++ D I W + + H + S+
Sbjct: 9 ISGHNKGITALTV-NP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57
Query: 509 ESIQFIFSTAIDGKIKAWLYDY 530
+ I +++
Sbjct: 58 QEYSSISWDDTLKVNGITKHEF 79
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 3e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 914 DEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQA 966
DEV + GH IT L +P L+S D ++ WS + S I +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS 51
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 53.0 bits (126), Expect = 1e-07
Identities = 43/331 (12%), Positives = 84/331 (25%), Gaps = 44/331 (13%)
Query: 281 VGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVV 340
V +K + ++ + + AG P D T
Sbjct: 98 VAEIKIGIEARSVESSKFKGYEDRYT-------------IAGAYWPPQFAIMDGETLEPK 144
Query: 341 RTLNQ-GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPL 399
+ ++ G V + +HP+ + ++ ++ + V KV ++ +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG-------KVLLVNYKDIDN 197
Query: 400 QNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDI 459
AA + W A + + L +++
Sbjct: 198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 257
Query: 460 AFAHPNKQLCIVTCGDDK--------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKES- 510
F HP T K A +K +G + H K S
Sbjct: 258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 317
Query: 511 IQFIFSTAIDGKIKAWLYDY-------------LGSRVDYDAPGNWCTMMAYSADGTRL- 556
+ + D +I + + + D Y+ G +
Sbjct: 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377
Query: 557 FSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587
FS K S LV ++ +K R
Sbjct: 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 61/514 (11%), Positives = 127/514 (24%), Gaps = 104/514 (20%)
Query: 571 EWNESE-GAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 628
EW E + R + N F D QI D D+ ++ +D
Sbjct: 1 EWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT 60
Query: 629 DGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISS 688
G R + G L V D I ++
Sbjct: 61 -GYAVHI--SRMSASGRYLLVIGRDARIDMIDLWAK------------------------ 93
Query: 689 KPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIK 748
+P + + + + + + D + ++
Sbjct: 94 EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF-----------AIMDGETLE 142
Query: 749 SWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808
+I + + V I + + K+ + +
Sbjct: 143 PKQIVSTRGMTV-----DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 197
Query: 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNM 868
+ AP L + ++ +A+ + +SA V +
Sbjct: 198 LTVTSIGAAPFLA----DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL---VDVGKT 250
Query: 869 MTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRIT 928
F+ P + H D +I IG + + Y + +L+G
Sbjct: 251 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW---KKVAELQGQGGGSL 307
Query: 929 GLAFSPTLNALV-------SSGADAQLCMWSIDKWEKLKSRF-IQAPAGRQSPLVGETKV 980
+ P + L + + ++ + + I A +
Sbjct: 308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367
Query: 981 QFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGA 1040
+++ + SV++ K + A
Sbjct: 368 EYNKRGDEVWF------SVWNGKND--------------------------------SSA 389
Query: 1041 IGVFDAETLRFRCRI-GPSAYIPT--YAVSNTAH 1071
+ V D +TL+ + + P PT + V NT H
Sbjct: 390 LVVVDDKTLKLKAVVKDPRLITPTGKFNVYNTQH 423
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 9/108 (8%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 458 DIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517
L VT D I + D + + + A + +++
Sbjct: 23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASG--RYLLVI 79
Query: 518 AIDGKIKAWLYDYLGSRVDYD-----APGNWCTMMAYSADGTRLFSCG 560
D +I + + + + +
Sbjct: 80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 2e-07
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 4/171 (2%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDIS 393
+L TV + S+D + ++ G N G + + E+ + L + + I+
Sbjct: 172 ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 394 AASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV 453
++ ++ G + PT + L AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 454 GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVC 504
V ++F + + + G D ++ WDV + T H +
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 22/302 (7%), Positives = 71/302 (23%), Gaps = 43/302 (14%)
Query: 434 LYTYNPTGELRQHLEIDAHVGGVNDIAF-----AHPNKQLCIVTCGDDKMIKVWDVVAGR 488
+ + H G++ + + + T + + +
Sbjct: 41 NKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRED 100
Query: 489 KQYTFEGHEAPVYSVCPHHKE-------------SIQFIFSTAIDGKIKAW--------- 526
+ + + + +T + G W
Sbjct: 101 ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160
Query: 527 ---------LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK----EGESHLVEWN 573
+ G+ P + T + S G + + + S L
Sbjct: 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219
Query: 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLP 633
E + RS+ + + I ++ + + ++
Sbjct: 220 NFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS 279
Query: 634 ASPRLRFNKEGSLLAVTTSDNGIKILANSDG--VRLLRMLEGRAMDKNRCPSEPISSKPL 691
+ F +++++ +D+G + + +R + + + I +
Sbjct: 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 339
Query: 692 TI 693
+
Sbjct: 340 IL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 8e-05
Identities = 37/374 (9%), Positives = 99/374 (26%), Gaps = 33/374 (8%)
Query: 592 GVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTT 651
+ + ++ + +K WD ++ D + + L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74
Query: 652 SDNGIKILA--NSDG-VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAP 708
+ ++A + G + R+ K + + + S +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGA 129
Query: 709 TLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPD 768
+ +R + G+ + A++ + + P + +++ P
Sbjct: 130 SNDRLLSHRLVA-----TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 769 SIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTL 828
A S + + GL +A+ + + + + S
Sbjct: 185 QFATS----VDISERGL----IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ S + + + + L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296
Query: 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI----TGLAFSPTLNALVSSGA 944
F+ + D ++ ++V+ E T L H + I LA ++L G
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 945 DAQLCMWSIDKWEK 958
++ + +K
Sbjct: 355 -----VFDVKFLKK 363
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSG 943
A L P + I +SV V H ++ T SP+ S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 944 ADAQLCMWSIDKWEKLKSRFIQAPAGRQS 972
+ +W + + I +G
Sbjct: 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVK 106
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 412 NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIV 471
G G + + + TG + G P+ I
Sbjct: 196 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IA 254
Query: 472 TCGDDKMIKVWDVVAGRKQYTFEGH---EAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ DK IK+W+V + + T E + Q + S + +G I
Sbjct: 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 867 NMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN- 925
F+ ++ + F D IA D +++I+NV +V+ +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 926 RITGLAFSPTLNALVSSGADAQLCMWSID 954
L T ALVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 31/297 (10%), Positives = 74/297 (24%), Gaps = 20/297 (6%)
Query: 323 VAHTPNVYSQDDLTKTVVRTLNQGSN-VMSMDFHPQQQTILLVGTNVGDISLWEVGSRER 381
+ +VY+ + T + S+ P G G++ +W+
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTH 92
Query: 382 LAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ V+ + + F + +
Sbjct: 93 ILKTTIPVFSGPVKDISWDS-----------ESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 442 ELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVY 501
Q +++ + V + K ++ P
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561
S+ + +DG D + A + +S DGT++ S
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDD---SLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618
K + WN + +++T + + T+ ++ I F + +
Sbjct: 259 DK----TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 3e-06
Identities = 31/333 (9%), Positives = 77/333 (23%), Gaps = 27/333 (8%)
Query: 320 FAGVAHTPNVYSQDDLTKTVVRTL---NQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
A + D V + + + G M P + + ++
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 377 GSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN-RCVWGPDGLMLGVAFSKHIVHLY 435
+ E L + S+ AA+S + + + + + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSL-------FGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 436 TYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQL-------CIVTCGDDKMIKVWDVVAGR 488
E + + +A+A +L ++ +++ + +
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 489 KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMA 548
+ + V++ ++ D G D M
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMRE 235
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGV------VQFDTTRNR 602
FS + + + + + V T +
Sbjct: 236 VRIMDVFYFSTAVNPAK--TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGST 293
Query: 603 FLAAGDEFQIKFWDMDNMNMLTTVDADGGLPAS 635
G + +D + + VD G S
Sbjct: 294 VWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 23/331 (6%), Positives = 78/331 (23%), Gaps = 40/331 (12%)
Query: 334 DLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD-ISLWEVGSRERLAHKPFKVWDI 392
D++ T V + + + + + + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 393 SAAS-----------MPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTG 441
+ + ++ + ++ S + + P
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 442 ELRQHLEIDAHVGGVN---------------DIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486
+ + + D A A + + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 487 GR-------KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYD 538
K + + ++ ++ +
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 539 APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598
P ++ + + L++++ + + ++
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTD-----LRLSA 324
Query: 599 TRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629
R + D+ +I + ++ TV+ D
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 12/165 (7%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ + S + P + V E G +
Sbjct: 207 RVVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDP 263
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
L + + + V G A K ++ Y T ++ +
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEV------KNN 316
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+ D+ + K + + DD I + + + T E + P+
Sbjct: 317 LTDLRLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 7e-05
Identities = 36/364 (9%), Positives = 90/364 (24%), Gaps = 32/364 (8%)
Query: 602 RFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKI-LA 660
+A Q D+ +L + R + + + + G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720
+ + + E + + + PT+ R
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVV---R 777
+ D +++ + D+ A A +
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 778 LIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESK 837
+Y S SL V ++ + P P S T + + +
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 838 PTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII 897
+ S+ + ++++ S +
Sbjct: 252 MYKRSSPIN-------------------VDPGDYRMIIPLESSILIYSVPVHGE-FAAYY 291
Query: 898 AIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWE 957
E + Y+V+ K+ +N +T L S ++ D ++ + ++K E
Sbjct: 292 QGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 958 KLKS 961
++
Sbjct: 348 DERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 28/245 (11%), Positives = 52/245 (21%), Gaps = 17/245 (6%)
Query: 882 PAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941
P+ F P D ++IA Q + V RI +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 942 SGAD--AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISV 999
G L ++ + K ND+ ++ V
Sbjct: 60 HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119
Query: 1000 YDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSA 1059
+ + A G+ AI V+D E + ++
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179
Query: 1060 YIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAELKWGGTPSQDNGPLPS 1119
+ ++ + + + PL
Sbjct: 180 HDYAP------------AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP 227
Query: 1120 NSSNP 1124
S NP
Sbjct: 228 GSPNP 232
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.002
Identities = 33/349 (9%), Positives = 78/349 (22%), Gaps = 34/349 (9%)
Query: 433 HLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492
+ + +G + + + K I + + ++D K
Sbjct: 25 QAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-YRTGKAEK 80
Query: 493 FEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGN----WCTMMA 548
FE + V+++ + + +
Sbjct: 81 FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSR 140
Query: 549 YSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGD 608
+ A G L T + ++ I + FD
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN--SHDYAPAFDADSKNLYYLSY 198
Query: 609 EFQIKFWDMDNMNMLTTV-----------DADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657
D +N V + PR ++ G
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 658 ILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGP 717
I + R++ LE + + ++ G +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK-TRKVTEVKNNL 317
Query: 718 PAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRL 766
+ +S+ D ++ V +D KI ++ + P + +
Sbjct: 318 TDLRLSA----DRKTVM-----VRKDDGKIYTF---PLEKPEDERTVET 354
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 410 SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLC 469
S R V V + ++ D I
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 470 IVTCGDDKMIKVWDVVAGR--KQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
T G D I+VWDV + +++T + + V + I S ++DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 23/253 (9%), Positives = 59/253 (23%), Gaps = 10/253 (3%)
Query: 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG-VNDIAFAHPNKQLCIVTCG 474
+ P + K + ++ ++ H V + F+ + +
Sbjct: 25 YDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD 84
Query: 475 DDKMIKVWDVVAGRKQYTF--------EGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAW 526
+ + VW ++ + + P+ + + + D
Sbjct: 85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 144
Query: 527 LYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGF 586
+D S + A RT+
Sbjct: 145 SWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204
Query: 587 RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR-FNKEGS 645
V + + G + +I +D + L ++ D +
Sbjct: 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQ 264
Query: 646 LLAVTTSDNGIKI 658
A +D I++
Sbjct: 265 KFATVGADATIRV 277
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 1e-04
Identities = 8/101 (7%), Positives = 26/101 (25%), Gaps = 2/101 (1%)
Query: 384 HKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGEL 443
+ +D + + + D + + ++ T +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT-TSKC 285
Query: 444 RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484
Q +D G + I++ D + +++
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 884 ATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK--TKLKGHQ-NRITGLAFSPTLNA-- 938
T L++ P N I + + V+ + +V + GH + +T + FSP +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTH 988
L S ++ +W ++ S + + Q + + + +
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 36/300 (12%), Positives = 82/300 (27%), Gaps = 33/300 (11%)
Query: 319 SFAGVAHTPN--VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEV 376
+FA +A++ + + D + V T+ GSN M P + + + D+S+ +
Sbjct: 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 377 GSRERLAHKPF----------------------KVWDISAASMPLQNALLNDAAISVNRC 414
+ +A P + A S
Sbjct: 62 ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGL 121
Query: 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG 474
PDG L V + T + + + G+ +
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181
Query: 475 DDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSR 534
+ V + V EA + + + + ++ + + +
Sbjct: 182 ISVIDTVTNSV-----IDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236
Query: 535 VDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS-GFRKRSLGV 593
G +A + DG +++ + + + + + I T + G + G
Sbjct: 237 TARIPVGPDPAGIAVTPDGKKVY---VALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 11/116 (9%)
Query: 432 VHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY 491
+H++ N G L ++ G V + P+K+ V + + + +
Sbjct: 16 IHVWNLNHEGALTL-TQVVDVPGQVQPMVV-SPDKRYLYVGVRPEFRVLAYRIAPDDGAL 73
Query: 492 TFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547
TF A S+ ST G+ G+ +
Sbjct: 74 TFAAESALPGSLTH---------ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV 120
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 40.2 bits (92), Expect = 0.001
Identities = 30/299 (10%), Positives = 70/299 (23%), Gaps = 46/299 (15%)
Query: 329 VYSQDDLTK-TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPF 387
V++ + T+ + ++ V M P ++ + + + + + +
Sbjct: 18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 388 KVW--------DISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVH------ 433
+ + N +SV R G ++ V H
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP 137
Query: 434 ----------------LYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD 475
L+T + G + E+ G HPN+Q
Sbjct: 138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 197
Query: 476 DKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDY----- 530
+ + VW++ + + + +
Sbjct: 198 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 257
Query: 531 -------LGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582
+ S+ + G L + G K + E +G +
Sbjct: 258 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEK 315
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 25/281 (8%), Positives = 60/281 (21%), Gaps = 23/281 (8%)
Query: 216 PTNNPLVGPIPKAGQFPPIGAHGPFQPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFV 275
P I + P+ ++P + + S +P++ + +
Sbjct: 85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144
Query: 276 QPSSAVGFLKHPRTPTGMTGMDYQSADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDL 335
+ T D G +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMH----CRDGSLAKVAF--------GTEGTPEITHTEVFHPE 192
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAA 395
+ ++ + + I + + GD + + +
Sbjct: 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPA-------VEALTEAERADG 245
Query: 396 SMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGG 455
P + + + V + TGE E
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFE---MGHE 301
Query: 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH 496
++ I + K L DK + + D +G + +
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 41/318 (12%), Positives = 78/318 (24%), Gaps = 44/318 (13%)
Query: 301 ADSDHLMKRIRTGQSDEVSFA------GVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDF 354
++ ++ I G A A T V + + + + D
Sbjct: 35 GEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI 94
Query: 355 HPQQQTILLVGTNVGDISLWEVGSRERLA----HKPFKVWDISAASMPLQNALLNDAAI- 409
LVGT SL G V D+ + + + I
Sbjct: 95 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF 154
Query: 410 ---SVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466
+ DG + VAF T+ +N A++
Sbjct: 155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------INHPAYSQKAG 207
Query: 467 QLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSVCPHHKESIQFIFS-------- 516
+L T I D+ +G ++ E + Q +
Sbjct: 208 RLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265
Query: 517 --------TAIDGKIKAWLYDYL-GSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGES 567
+ D G R+ G+ + S D L ++ +
Sbjct: 266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 568 HLVEWNESEGAIKRTYSG 585
++ + G R+ +
Sbjct: 326 YI--HDAESGEELRSVNQ 341
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 43.0 bits (101), Expect = 2e-04
Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 20/176 (11%)
Query: 829 MTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888
+ + A K ++ + + T ++ P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEF-TRYIPVPKNPHGLN 264
Query: 889 FHPQDNNIIAIGMEDSSVQIYNV-RVDEVKTKLKGHQNRITG----------LAFSPTLN 937
P IA G +V + + ++D++ ++ I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 938 ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH 993
A + D+Q+C W+I I+ G + + + K+ H
Sbjct: 325 AYTTLFIDSQVCKWNIADA-------IKHYNGDRVNYIRQ-KLDVQYQPGHNHASL 372
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 2e-04
Identities = 23/237 (9%), Positives = 52/237 (21%), Gaps = 28/237 (11%)
Query: 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLN 405
G ++ S P + + N +V+ +
Sbjct: 88 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVV----KPPRLEVFSTADGLEAKPVRTFP 142
Query: 406 DAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEI---------------- 449
V DG + + + + T T L
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 450 -DAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR-KQYTFEGHEAPVYSVCPHH 507
H + + + T D+ G+ F ++
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 508 KESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564
K+ Q ++ + + + +A+ G +L+ GT +
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 6e-04
Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 2/217 (0%)
Query: 181 WQHQLCKNPRPNPDIKTLFTDHSCNPTSNGARPPPPTNNPLVGPIPKAGQFPPIGAHGPF 240
+ +P ++ + + +
Sbjct: 127 FSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 241 QPVVSPSPGAIAGWMSSNSPSLPHPSMAAGPPGFVQPSSAVGFLKHPRTPTGMTGMDYQS 300
+ S S A Q + L + TG +
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 301 ADSDHLMKRIRTGQSDEVSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQT 360
+D +S + + D + +++ N + F +
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDK 305
Query: 361 ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASM 397
L +G D++++ + E++ + D+S +
Sbjct: 306 -LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.7 bits (91), Expect = 0.001
Identities = 17/172 (9%), Positives = 40/172 (23%), Gaps = 14/172 (8%)
Query: 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRER-------LAHKPFK 388
T L + P + + S+ +R + A +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 389 VWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLE 448
+ + D + P + + + Y +L +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLK-QRKLIKAAN 289
Query: 449 IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
+D +AF +L G + V++ K + +
Sbjct: 290 LD---HTYYCVAFDKKGDKL--YLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (98), Expect = 3e-04
Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)
Query: 811 KATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMT 870
+ + V P+ + D+ +N V G+++L + T
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDL----------------ENLFSVTLRDAGQIALIDGST 51
Query: 871 FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV------RVDEVKTKLKGHQ 924
+++ T+ + A + + D V + ++ V E+K +
Sbjct: 52 YEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR 108
Query: 925 NRITGLAFSPTLN-ALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF- 982
+ T A+ + Q + + E K + + + E +V
Sbjct: 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168
Query: 983 ---HNDQTHLLVVHES-QISVYD 1001
H ++ V E+ +I + D
Sbjct: 169 LASHYRPEFIVNVKETGKILLVD 191
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (94), Expect = 9e-04
Identities = 22/195 (11%), Positives = 46/195 (23%), Gaps = 15/195 (7%)
Query: 442 ELRQHLEIDAHVGGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500
E+R+ ++ + L VT D I + D + + A
Sbjct: 6 EMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV- 64
Query: 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-----DAPGNWCTMMAYSADGTR 555
+ +++F DGK+ + T +
Sbjct: 65 HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 556 LFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA---GDEFQI 612
+ V + K+ S R + A EF +
Sbjct: 123 AIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 613 KFWDMDNMNMLTTVD 627
+ + ++ D
Sbjct: 180 NVKETGKILLVDYTD 194
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 0.002
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498
G+ + + + I A +++ ++D + + Q + E +
Sbjct: 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
Query: 499 P 499
P
Sbjct: 359 P 359
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Score = 39.4 bits (91), Expect = 0.002
Identities = 32/316 (10%), Positives = 79/316 (25%), Gaps = 38/316 (12%)
Query: 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAH-KPFKVWD 391
+ G + + D + I L+ +++ + + F V +
Sbjct: 69 SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128
Query: 392 ISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEID 450
+QN + ++ V+ P L + + + + +GE+ +D
Sbjct: 129 TGKLEKNVQNYEYQENT-GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187
Query: 451 AHVGGVNDIAFA-HPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509
A G + A HP I + + + H P+
Sbjct: 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--------- 238
Query: 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT---SKEGE 566
+ + A + G +F+ +
Sbjct: 239 ----------------IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQG 282
Query: 567 SHLVEWNESEGAIKRTYSGFRKRSLGV----VQFDTTRNRFLAAGDEF--QIKFWDMDNM 620
G+I++ + G V + ++A D+ ++ + +
Sbjct: 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342
Query: 621 NMLTTVDADGGLPASP 636
+ P
Sbjct: 343 FLHRVARVRIPEPGFG 358
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1134 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.8 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.49 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.1 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.07 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.05 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.01 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.01 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.72 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.7 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.46 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.31 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.22 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.12 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.64 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.62 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.58 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.56 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.55 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.5 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.48 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.44 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.39 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.35 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.32 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.29 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 97.29 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.25 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.24 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.16 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.14 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 96.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.91 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.74 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.63 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 96.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.45 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.42 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.01 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.59 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.97 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.82 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.67 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.24 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.02 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.82 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-36 Score=336.56 Aligned_cols=295 Identities=13% Similarity=0.198 Sum_probs=254.8
Q ss_pred cceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 336 TKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 336 ~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
..+.+.++.|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++..... .......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEE
Confidence 446788889999999999999998 688887 89999999987654321 11112457999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|||++|++|+.||.|++||+...... ....+..|...|.+++|+|++. ++++++.|+.|++||+.+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 9999999999999999999998765432 2336778999999999999999 899999999999999999999999999
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
|...|.+++|++.+ ..+++++.|+.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||++
T Consensus 182 ~~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccccc--cccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 99999999998755 899999999999999999877665554 6678999999999999999874 7889999999
Q ss_pred CCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 576 EGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
+++... ...|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+... ..|.+++|+|++++|++|+.||+
T Consensus 255 ~~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 888754 445555 8999999999999999999999999999999998887643 47999999999999999999999
Q ss_pred EEEEEC
Q 001160 656 IKILAN 661 (1134)
Q Consensus 656 i~iw~~ 661 (1134)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-35 Score=321.32 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=245.8
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+.+.+.+++++|+|+. ++.++ ++.|.+||+.++..... +.+|.+.|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeEe
Confidence 3456778999999995 55554 67899999998765542 678999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcC--CCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGD--DKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
+|+.||+|++||+.+++.... ..+.+|..+|.+++|+|+++ ++++++. ++.+++|++++++.+..+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998765432 35778999999999999999 6777764 567999999999999999999999999
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
++|+|+++ ..+++|+.|+.|++||+++.+....+..|...|.++.|+|+++++++++. ++.+++||..++..+..
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99988653 36889999999999999998888899999999999999999999999874 78899999999988877
Q ss_pred ecC-------ccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCc
Q 001160 583 YSG-------FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG 655 (1134)
Q Consensus 583 ~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 655 (1134)
+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++.++..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 444 7999999999999999999999999999999999999866432 2344556666778999999999
Q ss_pred EEEEECC
Q 001160 656 IKILANS 662 (1134)
Q Consensus 656 i~iw~~~ 662 (1134)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-35 Score=324.83 Aligned_cols=315 Identities=17% Similarity=0.284 Sum_probs=268.4
Q ss_pred EEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEe
Q 001160 481 VWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 481 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.|.. .....++|+||.++|++++|+|++ .+|++|+.||+|++||+.+++....+..|...|.+++|+|++.+++++.
T Consensus 2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~ 78 (317)
T d1vyhc1 2 EWIP-RPPEKYALSGHRSPVTRVIFHPVF--SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78 (317)
T ss_dssp CCCC-CSSCSCEEECCSSCEEEEEECSSS--SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccCC-CCCccEEEcCCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence 3543 344457899999999999998865 8999999999999999999999999999999999999999999999887
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
. ++.+..|+....+....+.++.. .+.++.++++++.+++++.|+.+++||+.+++.+..+..+. ..+.+++|
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 151 (317)
T d1vyhc1 79 A----DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRP 151 (317)
T ss_dssp T----TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEE
T ss_pred c----ccccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceeeec
Confidence 4 67789999999888888888877 88999999999999999999999999999999999988764 47899999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001160 641 NKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1134)
++++.+|++++.|+.|++|+..++ .....+.
T Consensus 152 ~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~------------------------------------------------ 182 (317)
T d1vyhc1 152 NQDGTLIASCSNDQTVRVWVVATK-ECKAELR------------------------------------------------ 182 (317)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTC-CEEEEEC------------------------------------------------
T ss_pred ccCCCEEEEEeCCCeEEEEeeccc-eeeEEEe------------------------------------------------
Confidence 999999999999999999998776 2221111
Q ss_pred ccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEee
Q 001160 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWK 800 (1134)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~ 800 (1134)
.+...+..+.++|++.........
T Consensus 183 -------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~~------- 206 (317)
T d1vyhc1 183 -------------------------------------------------EHRHVVECISWAPESSYSSISEAT------- 206 (317)
T ss_dssp -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGCC-------
T ss_pred -------------------------------------------------cCCCCceEEEEeeccccceeeccc-------
Confidence 144567788888876543322111
Q ss_pred cccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecC
Q 001160 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS 879 (1134)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~ 879 (1134)
.........++.++++++ |+.|++||+.+++++..+.+
T Consensus 207 -----------------------------------------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 245 (317)
T d1vyhc1 207 -----------------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245 (317)
T ss_dssp -----------------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------------------cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence 122233445778888888 99999999999999999999
Q ss_pred CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEe
Q 001160 880 PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWS 952 (1134)
Q Consensus 880 ~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd 952 (1134)
|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++++|+|++.|++|+|||
T Consensus 246 ~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 246 HDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-35 Score=320.57 Aligned_cols=285 Identities=20% Similarity=0.363 Sum_probs=260.4
Q ss_pred Eec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCC
Q 001160 342 TLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1134)
Q Consensus 342 ~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg 420 (1134)
+|. |.++|++++|+|+++ +|++|+.||+|+|||+.+++.+.+ +.+|...|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeeccc
Confidence 344 999999999999998 789999999999999999887654 67899999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCe
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV 500 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v 500 (1134)
.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 999999999999999988776544 5668999999999999999 89999999999999999999999999999999
Q ss_pred EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCC--------------------CEEEEEe
Q 001160 501 YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADG--------------------TRLFSCG 560 (1134)
Q Consensus 501 ~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------~~l~~~~ 560 (1134)
.++++++++ .+|++++.|+.|++|++.+......+..+...+.+++|+|++ ..+++++
T Consensus 147 ~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 147 RMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp EEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred eeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence 999998754 899999999999999999999999999999999999998864 3566665
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
. ++.|++||..+++++.++.+|.. .|.+++|+|++++|++++.||.|++||+.+++++..+..|. ..|++++|
T Consensus 225 ~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~~~~~ 297 (317)
T d1vyhc1 225 R----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSLDF 297 (317)
T ss_dssp T----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEEEE
T ss_pred C----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEEEEEE
Confidence 3 78899999999999999999887 89999999999999999999999999999999999998774 47999999
Q ss_pred ccCCCEEEEEeCCCcEEEEE
Q 001160 641 NKEGSLLAVTTSDNGIKILA 660 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~ 660 (1134)
+|++++|++|+.||+|+|||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-34 Score=322.22 Aligned_cols=282 Identities=12% Similarity=0.174 Sum_probs=238.1
Q ss_pred cccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 771 AASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 771 ~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
|...|.+++|+|+|++|++++ ||.|+|||+....... .... .....| ...|.+++|+|
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~--~~~~~h-~~~I~~v~~s~ 107 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQ--LDCLNR-DNYIRSCKLLP 107 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEE--EECSCT-TSBEEEEEECT
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEE--eeecCC-CCcEEEEEEcC
Confidence 889999999999999999876 8999999986422100 0111 111237 88999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC--CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccce
Q 001160 851 NDSYVMSAS-GGKVSLFNMMT--FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI 927 (1134)
Q Consensus 851 dg~~la~~s-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i 927 (1134)
||++|++++ ||.|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v 186 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 999999998 99999999874 456677888999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeCCCcc
Q 001160 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDSKLEC 1006 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~~~~~ 1006 (1134)
.+++|++++..+++++.|+.|++||+.+++.+... .+. ..+.+++|+|++++|++ +.++.+++||++...
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~------~~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH------DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE------ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred ccccccccccccccccccccccccccccceeeccc------ccc---cceEEEEEcccccccceeccccccccccccccc
Confidence 99999999999999999999999999988754321 122 46899999999999998 568999999994443
Q ss_pred eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1007 SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1007 ~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
.... ..|...|++++|+|||++|++++.||.|++||+.+++.+..+. +...+.+++|+| ++++|+
T Consensus 258 ~~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~s~-d~~~l~ 322 (337)
T d1gxra_ 258 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------ESSSVLSCDISV-DDKYIV 322 (337)
T ss_dssp EEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSSCEEEEEECT-TSCEEE
T ss_pred cccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-----------CCCCEEEEEEeC-CCCEEE
Confidence 3322 4568999999999999999999999999999999999887654 224567899999 789999
Q ss_pred EEeCCCcEEEEec
Q 001160 1087 LGMSDGAVHVVEP 1099 (1134)
Q Consensus 1087 s~~~Dg~v~vW~~ 1099 (1134)
+|+.||+|+|||+
T Consensus 323 t~s~D~~I~vWdl 335 (337)
T d1gxra_ 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEeCCCeEEEEEE
Confidence 9999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-34 Score=322.29 Aligned_cols=347 Identities=14% Similarity=0.244 Sum_probs=251.3
Q ss_pred EEEeCCCeEEEEEcCCCCccce-eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEE
Q 001160 424 GVAFSKHIVHLYTYNPTGELRQ-HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYS 502 (1134)
Q Consensus 424 as~~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 502 (1134)
+.+..++...+|+......... .....+|.+.|++++|+|||+ +|++|+ |+.|+|||+.+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3566778888999776554321 123336999999999999999 899987 899999999999999888766543322
Q ss_pred EEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 503 VCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 503 i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
... ........+...|.+++|+|++++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------------------------~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------------------------LNTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------------------------cccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 001122346778999999999999999985 78899999999999999
Q ss_pred ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEcc-CCCEEEEEeCCCcEEEEEC
Q 001160 583 YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNK-EGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 583 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iw~~ 661 (1134)
+.+|.. .|.++++++++..+++++.++.+++||..+.........+. ...++.+.+ ++.+|++++.||.|++|+.
T Consensus 159 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 159 LQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cccccc-cccccccccccccccccccceeeeeeecccccccccccccc---ccccccccCCCCCeEEEEcCCCeEEEeec
Confidence 999887 89999999999999999999999999999988887776553 334555554 8899999999999999998
Q ss_pred CCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccc
Q 001160 662 SDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVA 741 (1134)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1134)
.++. ....+....
T Consensus 235 ~~~~-~~~~~~~~~------------------------------------------------------------------ 247 (388)
T d1erja_ 235 ETGF-LVERLDSEN------------------------------------------------------------------ 247 (388)
T ss_dssp TTCC-EEEEEC---------------------------------------------------------------------
T ss_pred ccCc-cceeecccc------------------------------------------------------------------
Confidence 7762 111110000
Q ss_pred cccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccc
Q 001160 742 EDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLW 821 (1134)
Q Consensus 742 ~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w 821 (1134)
....+|...|.+++|+|++++|++++.||.|++||+.....
T Consensus 248 ------------------------~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~--------------- 288 (388)
T d1erja_ 248 ------------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN--------------- 288 (388)
T ss_dssp ---------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------
T ss_pred ------------------------ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcc---------------
Confidence 00011444555555555555555555555555554321000
Q ss_pred cCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe
Q 001160 822 QPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 822 ~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
.. ... ....+........|...|.+++|+| ++++|++|+
T Consensus 289 -------~~--------------~~~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~ 327 (388)
T d1erja_ 289 -------KS--------------DSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGS 327 (388)
T ss_dssp --------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEE
T ss_pred -------cc--------------ccc-------------------cccccceeeecccccceEEEEEECC-CCCEEEEEe
Confidence 00 000 0001233455567889999999999 899999999
Q ss_pred CCCcEEEEEcCCceEEEEecCcccceEEEEE------ecCCCEEEEEcCCCcEEEEeCC
Q 001160 902 EDSSVQIYNVRVDEVKTKLKGHQNRITGLAF------SPTLNALVSSGADAQLCMWSID 954 (1134)
Q Consensus 902 ~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~------s~d~~~l~s~~~D~~i~iWd~~ 954 (1134)
.||.|++||+.+++++..+++|.+.|+++++ +||+++|||++.|++|+||+++
T Consensus 328 ~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999999985 6789999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-34 Score=324.80 Aligned_cols=308 Identities=14% Similarity=0.246 Sum_probs=244.2
Q ss_pred eEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEc
Q 001160 338 TVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWG 417 (1134)
Q Consensus 338 ~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~s 417 (1134)
.+...+.|.+.|+|++|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEEC
Confidence 4566778999999999999998 788887 8999999999988765311100000 000111122245688899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 418 PDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 418 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
|+|++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.|++||..+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999887655 6778999999999999998 89999999999999999998887776555
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe-------cCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEE
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY-------DAPGNWCTMMAYSADGTRLFSCGTSKEGESHLV 570 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~ 570 (1134)
. ..++.+.+. ++.+|++++.|+.|++||..+......+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 206 ~-~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 G-VTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp C-EEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred c-cccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4 455555543 4589999999999999999987765543 346678999999999999999875 78899
Q ss_pred EEeCCCCee------------EEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceE
Q 001160 571 EWNESEGAI------------KRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRL 638 (1134)
Q Consensus 571 ~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 638 (1134)
+||+.++.. ......|.. .|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 999976543 333444555 899999999999999999999999999999999999997754 68877
Q ss_pred E------EccCCCEEEEEeCCCcEEEEECC
Q 001160 639 R------FNKEGSLLAVTTSDNGIKILANS 662 (1134)
Q Consensus 639 ~------~s~d~~~l~~~~~dg~i~iw~~~ 662 (1134)
+ |+|++.+|++|+.||+|+||+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6 46789999999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-32 Score=303.80 Aligned_cols=292 Identities=19% Similarity=0.298 Sum_probs=255.3
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+..++|. |.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEe
Confidence 4567787 999999999999998 789999999999999999887654 5679999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCcc-ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 417 GPDGLMLGVAFSKHIVHLYTYNPTGEL-RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 417 spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
+|+++++++|+.|+.+.+|+....... .....+.+|...........+. .+..+..|.....|+............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765443 2334566788777776666554 577888899999999888888888888
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
+...+....+.+.. .++++++.|+.|++||+++.+....+..|...|++++|+|++++|++++. ++.|++||+.
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 88889998887655 89999999999999999999999999999999999999999999999874 7889999999
Q ss_pred CCeeEEEecCc-cCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCC
Q 001160 576 EGAIKRTYSGF-RKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDN 654 (1134)
Q Consensus 576 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 654 (1134)
....+..+... ....+.+++|+|++++|++|+.||.|++||+.+++++..+.+|. ..|.+++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEccCC
Confidence 98888776433 23369999999999999999999999999999999999998774 4899999999999999999999
Q ss_pred cEEEEE
Q 001160 655 GIKILA 660 (1134)
Q Consensus 655 ~i~iw~ 660 (1134)
.|+|||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5e-33 Score=303.61 Aligned_cols=253 Identities=12% Similarity=0.110 Sum_probs=219.9
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
..+.+.+.+++++|+|+.||.+. ++.|.+||++++.... .+.+|...|++++|+|+|+ +|++|+.|++|++||+
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT 87 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeee
Confidence 34566788899999999999985 5679999999876665 6789999999999999999 8999999999999999
Q ss_pred CCCeee--EEecCCCCCeEEEEeeccCCccEEEEEec--CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCE-EEEE
Q 001160 485 VAGRKQ--YTFEGHEAPVYSVCPHHKESIQFIFSTAI--DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTR-LFSC 559 (1134)
Q Consensus 485 ~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~ 559 (1134)
.++... ..+.+|..+|.+++|++++ .++++++. +..+++|++++.+....+..|...|.+++|+|++++ ++++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~--~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg 165 (311)
T d1nr0a1 88 TQTTHILKTTIPVFSGPVKDISWDSES--KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165 (311)
T ss_dssp SSTTCCEEEEEECSSSCEEEEEECTTS--CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred eccccccccccccccCccccccccccc--cccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 987654 5678899999999998754 88888875 456999999999888888999999999999999987 5566
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC-----CCCCC
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD-----GGLPA 634 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~ 634 (1134)
+ .++.|++||.++++....+..|.. .|.++.|+|+++++++++.|+.|++||..++.....+... ++...
T Consensus 166 s----~d~~i~i~d~~~~~~~~~~~~~~~-~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~ 240 (311)
T d1nr0a1 166 S----DDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 240 (311)
T ss_dssp E----TTSCEEEEETTTBEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred c----cccccccccccccccccccccccc-cccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 5 378899999999999999999887 8999999999999999999999999999999888877532 24557
Q ss_pred cceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhh
Q 001160 635 SPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 635 v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
|.+++|+|++++|++|+.||.|+|||+.++ ++++.+
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l 276 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTI 276 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 999999999999999999999999999887 444444
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-33 Score=315.53 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=233.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+.+|.++|.+++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence 36899999999998 788999999999999987753321 126789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee----eEEecCCCCCeE
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK----QYTFEGHEAPVY 501 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~h~~~v~ 501 (1134)
|+.|++|++||+.++... ....+.+|...|.+++|+|+++ .|++|+.|++|++|++..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 999999999999876533 2335668999999999999999 899999999999999876543 234567999999
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCC------------------ceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLG------------------SRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+++|+|++ .+|++|+.|++|++||..... .......+...|.+++|+|+++++++++.
T Consensus 146 ~v~~~p~~--~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccccc--cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 99998854 899999999999999986432 23345567778999999999999999874
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeeEEEE---------------
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN--MNMLTTV--------------- 626 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--------------- 626 (1134)
|+.|++||+.+++.+..+..|.. +|.+++|+|+++++++| .|+.+++|.... +......
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 78899999999999999998877 89999999999777655 577666665432 2211000
Q ss_pred ----------------------eCCCCCCCcceEEEccCC----CEEEEEeCCCcEEEEECCCchh
Q 001160 627 ----------------------DADGGLPASPRLRFNKEG----SLLAVTTSDNGIKILANSDGVR 666 (1134)
Q Consensus 627 ----------------------~~~~~~~~v~~~~~s~d~----~~l~~~~~dg~i~iw~~~~~~~ 666 (1134)
....|...|.++++.+.+ ..+++++.||.|++||+++.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~ 363 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcChh
Confidence 000134568889987744 3689999999999999976533
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-32 Score=306.89 Aligned_cols=342 Identities=17% Similarity=0.282 Sum_probs=250.1
Q ss_pred ccccCCcCe-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 403 LLNDAAISV-NRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 403 ~l~~h~~~V-~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
.|.||.+.| +|++| +|++||+|+.||+|+|||+.+++.+. .+.+|.++|++++|++++ +|++|+.|++|++
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence 378999886 55554 78899999999999999999987665 788999999999999864 6999999999999
Q ss_pred EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 482 WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
|++...+.......+.............++.++++++.|+.|++||+................ .....+.
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 148 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPE--------- 148 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTT---------
T ss_pred ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccc---------
Confidence 999999888777666555555544445566899999999999999998655433222111110 0111111
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
.....+.....+.. .+ ..+.++++.++++..|+.|++||+.+++.+.....+. ..+.++.|+
T Consensus 149 -------------~~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~ 210 (355)
T d1nexb2 149 -------------ENPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYD 210 (355)
T ss_dssp -------------TCTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEE
T ss_pred -------------cccceeeeeeeccc-cc--cccccccceeeeecccceeeeeecccccceeeeeccc--ccccccccc
Confidence 01112222223332 33 3456678899999999999999999999888887553 468899999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcc
Q 001160 642 KEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVS 721 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1134)
+++.++++++.|+.|++|+..++. ....
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~~-~~~~--------------------------------------------------- 238 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENGE-LMYT--------------------------------------------------- 238 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTCC-EEEE---------------------------------------------------
T ss_pred ccceeeecccccceEEeeeccccc-cccc---------------------------------------------------
Confidence 999999999999999999987651 1000
Q ss_pred cCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeec
Q 001160 722 ISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKW 801 (1134)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~ 801 (1134)
T Consensus 239 -------------------------------------------------------------------------------- 238 (355)
T d1nexb2 239 -------------------------------------------------------------------------------- 238 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCC
Q 001160 802 QRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP 880 (1134)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~ 880 (1134)
+.+ | ...|.+++++ +++|++++ ||.|++||+.++..... .|
T Consensus 239 -------------------------------~~~--h-~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--~~ 280 (355)
T d1nexb2 239 -------------------------------LQG--H-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YH 280 (355)
T ss_dssp -------------------------------ECC--C-SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--EE
T ss_pred -------------------------------ccc--c-cccccccccc--cceeeeeecccccccccccccceecc--cc
Confidence 001 4 6667777775 46888888 89999999887765433 45
Q ss_pred CCceEEE-EEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-EecCcccceEEEEEecCCCEEEEEcCCCcEEEEeC
Q 001160 881 PPAATFL-AFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSI 953 (1134)
Q Consensus 881 ~~~i~~l-~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~ 953 (1134)
...+.++ .+++ ++++|++| .||.|+|||+++++++. .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus 281 ~~~~~~~~~~~~-~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 281 HTNLSAITTFYV-SDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CTTCCCCCEEEE-CSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred cCCceEEEEEcC-CCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 5555555 4566 77877766 58999999999999875 47889999999999987 57888999999777654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.2e-32 Score=300.33 Aligned_cols=248 Identities=16% Similarity=0.246 Sum_probs=223.2
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
|.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+..|..+|.+++|+|++. ++++|+.|+.+.+|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence 78999999999999999999999999999999999987655 7788999999999999999 899999999999999
Q ss_pred CCCC----eeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEE
Q 001160 484 VVAG----RKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSC 559 (1134)
Q Consensus 484 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 559 (1134)
.... .....+.+|............ ..+.....|.....|+................+....+.+.+.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 7654 345667788887777665443 678889999999999998887777888888899999999999999998
Q ss_pred eeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEE
Q 001160 560 GTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLR 639 (1134)
Q Consensus 560 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 639 (1134)
+. ++.|++||+++++++.++.+|.. .|.+++|+|++++|++|+.||.|++|++........+....+...|.+++
T Consensus 203 ~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 277 (340)
T d1tbga_ 203 AC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277 (340)
T ss_dssp ET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred ec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE
Confidence 74 78899999999999999999887 89999999999999999999999999999999988887776667899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCc
Q 001160 640 FNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 640 ~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
|+|++++|++|+.||.|++||+.++
T Consensus 278 ~s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 278 FSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp ECSSSCEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEECCCEEEEEECCCC
Confidence 9999999999999999999998776
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-32 Score=298.40 Aligned_cols=291 Identities=10% Similarity=0.097 Sum_probs=229.4
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
|...+++. |.++|++++|||||+ +|++|+.||+|++||+.+++.+.. ...+|...|.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~ 62 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIK 62 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEE
Confidence 45667777 999999999999998 788999999999999999876643 1346999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|+|+|+++ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +.....
T Consensus 63 ~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~-- 134 (299)
T d1nr0a2 63 TTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP-- 134 (299)
T ss_dssp ECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--
T ss_pred eeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc--cccccc--
Confidence 99999755 566899999999876543332223456788899999999998 455544 6789999943 333333
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee-EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV-DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
....+.+++|+|++ .++++++.|+.|++||+++..... ....|...|.+++|+|+++++++++. ++.|++||+
T Consensus 135 ~~~~~~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~ 208 (299)
T d1nr0a2 135 ISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV 208 (299)
T ss_dssp CSSCEEEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccc
Confidence 34457888987754 899999999999999998766543 44567889999999999999999874 778999999
Q ss_pred CCCeeEE---EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCC-CCCcceEEEccCCCEEEEE
Q 001160 575 SEGAIKR---TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGG-LPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 575 ~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~ 650 (1134)
.++.... .+.+|.. .|.+++|+|++++|++|+.||.|++||++++..........+ ...+.++. ++++.+|+++
T Consensus 209 ~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~ 286 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSA 286 (299)
T ss_dssp GGTTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEE
T ss_pred ccccccccccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEE
Confidence 8876553 4455655 899999999999999999999999999998765544443332 23455554 4667899999
Q ss_pred eCCCcEEEEECC
Q 001160 651 TSDNGIKILANS 662 (1134)
Q Consensus 651 ~~dg~i~iw~~~ 662 (1134)
+.|++|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCEEEEEecc
Confidence 999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.8e-32 Score=301.28 Aligned_cols=345 Identities=12% Similarity=0.125 Sum_probs=263.3
Q ss_pred eeEecCCCCcE-EEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 534 RVDYDAPGNWC-TMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 534 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
+..+.+|...| +|++ +++++|++++. |+.|++||+.+++++.++.+|.. .|.+++|+|+ ++|++++.|+.|
T Consensus 5 ~~tL~GH~~~vitc~~--~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQ--FEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEEE--ECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 45678888775 5555 46889999974 88899999999999999999987 8999999985 589999999999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCcc
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLT 692 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1134)
++|+....+..................+++++.++++++.|+.|++|++.+... ........
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~~----------------- 138 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEEH----------------- 138 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------------------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce-eccccccc-----------------
Confidence 999999999888877665544556677889999999999999999999987621 11110000
Q ss_pred ccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccc
Q 001160 693 INALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAA 772 (1134)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 772 (1134)
T Consensus 139 -------------------------------------------------------------------------------- 138 (355)
T d1nexb2 139 -------------------------------------------------------------------------------- 138 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC
Q 001160 773 SKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND 852 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg 852 (1134)
........+........ .. . .| ...+ ..+.+++
T Consensus 139 -~~~~~~~~~~~~~~~~~-------~~----------------------------------~--~~-~~~v--~~~~~~~ 171 (355)
T d1nexb2 139 -DYPLVFHTPEENPYFVG-------VL----------------------------------R--GH-MASV--RTVSGHG 171 (355)
T ss_dssp -CCCEEESCTTTCTTEEE-------EE----------------------------------E--CC-SSCE--EEEEEET
T ss_pred -eeccceeccccccceee-------ee----------------------------------e--ec-cccc--ccccccc
Confidence 00000000000000000 00 0 02 3333 3455688
Q ss_pred CEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEE
Q 001160 853 SYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLA 931 (1134)
Q Consensus 853 ~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~ 931 (1134)
++++++. |+.|++||+.+++.+....++...+.++.|+| ++.++++++.|+.|++||+.++..+..+.+|...|.+++
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 250 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE
T ss_pred ceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccc
Confidence 8999998 89999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeC-CCcceecc
Q 001160 932 FSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSW 1010 (1134)
Q Consensus 932 ~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~ 1010 (1134)
|+ +++|++++.|++|++||+.++... ... |.. ......+|++++++++++.|+.|++||+ +++.+...
T Consensus 251 ~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~ 319 (355)
T d1nexb2 251 LS--DKFLVSAAADGSIRGWDANDYSRK----FSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHAN 319 (355)
T ss_dssp EC--SSEEEEECTTSEEEEEETTTCCEE----EEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSC
T ss_pred cc--cceeeeeeccccccccccccccee----ccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEE
Confidence 86 579999999999999999886532 111 111 1223356789999999999999999999 56665433
Q ss_pred CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 1011 SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1011 ~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
..+|..+|++++|+|+ .++++++.||.++||.+
T Consensus 320 --~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 320 --ILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp --TTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred --ecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 3456899999999987 57888999999777654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.6e-32 Score=294.27 Aligned_cols=296 Identities=16% Similarity=0.157 Sum_probs=226.4
Q ss_pred CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCC
Q 001160 620 MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPA 699 (1134)
Q Consensus 620 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1134)
|+..+.+.+| ...|++++|+||+++|++|+.||+|++||+.+++ ..+.+.
T Consensus 2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS---------------------------
T ss_pred CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEc---------------------------
Confidence 4566777776 4589999999999999999999999999998762 111110
Q ss_pred cccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEE
Q 001160 700 SNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLI 779 (1134)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 779 (1134)
..|...|.+++
T Consensus 52 ---------------------------------------------------------------------~~h~~~v~~v~ 62 (299)
T d1nr0a2 52 ---------------------------------------------------------------------DVHATMITGIK 62 (299)
T ss_dssp ---------------------------------------------------------------------CSCSSCEEEEE
T ss_pred ---------------------------------------------------------------------CCCCCcEEEEE
Confidence 12667899999
Q ss_pred EecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe
Q 001160 780 YTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS 859 (1134)
Q Consensus 780 ~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s 859 (1134)
|+|+|+ +++++.|+.+++|+........ .... . ..| ...+.+++++++|++++++.
T Consensus 63 ~~~~g~-~~~~~~d~~v~~~~~~~~~~~~-----------------~~~~---~--~~~-~~~~~~~~~s~~g~~~~~~~ 118 (299)
T d1nr0a2 63 TTSKGD-LFTVSWDDHLKVVPAGGSGVDS-----------------SKAV---A--NKL-SSQPLGLAVSADGDIAVAAC 118 (299)
T ss_dssp ECTTSC-EEEEETTTEEEEECSSSSSSCT-----------------TSCC---E--EEC-SSCEEEEEECTTSSCEEEEE
T ss_pred eeccce-eecccceeeEEEeccCCccccc-----------------cccc---c--ccc-cccccccccccccccccccc
Confidence 999997 6777889999999864322100 0000 1 114 67889999999999999888
Q ss_pred CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE-EecCcccceEEEEEecCCCE
Q 001160 860 GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT-KLKGHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 860 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~-~l~~h~~~i~~l~~s~d~~~ 938 (1134)
++.+.+|+.. +..... ....+++++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++
T Consensus 119 ~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (299)
T d1nr0a2 119 YKHIAIYSHG--KLTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193 (299)
T ss_dssp SSEEEEEETT--EEEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred cccccccccc--cccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999954 333333 344678999999 89999999999999999999887554 34578999999999999999
Q ss_pred EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCC
Q 001160 939 LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1018 (1134)
Q Consensus 939 l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~ 1018 (1134)
|++++.|+.|++||+.++.... ......+|..
T Consensus 194 l~~~~~d~~i~~~~~~~~~~~~------------------------------------------------~~~~~~~h~~ 225 (299)
T d1nr0a2 194 LVATDQSRKVIPYSVANNFELA------------------------------------------------HTNSWTFHTA 225 (299)
T ss_dssp EEEEETTSCEEEEEGGGTTEES------------------------------------------------CCCCCCCCSS
T ss_pred cccccccccccccccccccccc------------------------------------------------cccccccccc
Confidence 9999999999999998754211 0111245688
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEEEe
Q 001160 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1019 ~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
.|++++|+|++++|++|+.||.|++||+.++.....+... .+...++.+.+++ ++.+|++|+.||+|++||
T Consensus 226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG--------AHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT--------SSTTSCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec--------CCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEe
Confidence 9999999999999999999999999999987654333211 1223344444555 468999999999999999
Q ss_pred cC
Q 001160 1099 PS 1100 (1134)
Q Consensus 1099 ~~ 1100 (1134)
++
T Consensus 297 l~ 298 (299)
T d1nr0a2 297 VP 298 (299)
T ss_dssp CC
T ss_pred cc
Confidence 85
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-31 Score=294.15 Aligned_cols=319 Identities=18% Similarity=0.287 Sum_probs=253.5
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
...++||.+.|.+ +++++|+ +|+||+.|++|+|||+.++++++++.+|.+.|.+++|++ .+|++++.|+.+++
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKV 81 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEE
T ss_pred CEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccccc
Confidence 3478899999865 4667788 899999999999999999999999999999999999975 58999999999999
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
|+................+......+ ..+..+. .++.+.+|+..+++....+..... . ...+.+....+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~d~~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 152 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGS----RDATLRVWDIETGQCLHVLMGHVA-A--VRCVQYDGRRVVS 152 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEET--TEEEEEE----TTSEEEEEESSSCCEEEEEECCSS-C--EEEEEECSSCEEE
T ss_pred cccccccceecccccceeEeeeeccc--ccccccc----cceeEEEeecccccceeeeecccc-c--ceeeccccceeee
Confidence 99988777766666666666555443 4555554 377899999999988877766544 2 2334556678889
Q ss_pred EeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCC
Q 001160 606 AGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEP 685 (1134)
Q Consensus 606 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1134)
++.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..+. .+..
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~--------------- 212 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHT--------------- 212 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEE---------------
T ss_pred ecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eeeE---------------
Confidence 9999999999999999888887663 3456667788999999999999999976541 0000
Q ss_pred CCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEee
Q 001160 686 ISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALR 765 (1134)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~ 765 (1134)
T Consensus 213 -------------------------------------------------------------------------------- 212 (342)
T d2ovrb2 213 -------------------------------------------------------------------------------- 212 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEE
Q 001160 766 LPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAAC 845 (1134)
Q Consensus 766 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~ 845 (1134)
+.+ | ...+.+
T Consensus 213 -------------------------------------------------------------------~~~--~-~~~v~~ 222 (342)
T d2ovrb2 213 -------------------------------------------------------------------LTG--H-QSLTSG 222 (342)
T ss_dssp -------------------------------------------------------------------ECC--C-CSCEEE
T ss_pred -------------------------------------------------------------------ecc--c-ccceeE
Confidence 000 3 555666
Q ss_pred EEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecC---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec
Q 001160 846 IALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMS---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 846 ~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
++++ ++++++++ ||.|++||+...+....+.. |...+.++.+++ +++++|+.||+|++||+.+++++..+.
T Consensus 223 ~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 223 MELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence 6554 46888888 89999999988888777765 455677777754 699999999999999999999888763
Q ss_pred -----CcccceEEEEEecCCCEEEEEcCCCc----EEEEeCCC
Q 001160 922 -----GHQNRITGLAFSPTLNALVSSGADAQ----LCMWSIDK 955 (1134)
Q Consensus 922 -----~h~~~i~~l~~s~d~~~l~s~~~D~~----i~iWd~~~ 955 (1134)
+|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 298 ~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred cccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 67888999999999999999999986 99999874
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.2e-32 Score=303.13 Aligned_cols=306 Identities=16% Similarity=0.181 Sum_probs=238.4
Q ss_pred CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe--eEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 001160 541 GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA--IKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMD 618 (1134)
Q Consensus 541 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 618 (1134)
..+|+|++|+|||++|++++. ++.|++||..+++ .+..+.+|.. .|.+++|+|++++|++++.|+.|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 357999999999999999874 7789999998775 6677888877 89999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCC
Q 001160 619 NMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGP 698 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1134)
++.....+....+...|.+++|+|+++.|++++.|+++++|+...... ....
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~-~~~~--------------------------- 133 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WWVC--------------------------- 133 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-EEEE---------------------------
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeecccc-cccc---------------------------
Confidence 888777766656667899999999999999999999999999765411 0000
Q ss_pred CcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEE
Q 001160 699 ASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRL 778 (1134)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 778 (1134)
......|...|.++
T Consensus 134 ------------------------------------------------------------------~~~~~~~~~~v~~v 147 (371)
T d1k8kc_ 134 ------------------------------------------------------------------KHIKKPIRSTVLSL 147 (371)
T ss_dssp ------------------------------------------------------------------EEECTTCCSCEEEE
T ss_pred ------------------------------------------------------------------cccccccccccccc
Confidence 00002266789999
Q ss_pred EEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCC--CCCccccccCCCCCCCCceEEEEeccCCCEEE
Q 001160 779 IYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP--SGTLMTNDINESKPTEESAACIALSKNDSYVM 856 (1134)
Q Consensus 779 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la 856 (1134)
+|+|++++|++++.|+.+++|+.......... ....|+.. .+..+. ....| ...|.+++|+|+|++|+
T Consensus 148 ~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~-~~~v~~~~~s~~g~~l~ 217 (371)
T d1k8kc_ 148 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP------APTPWGSKMPFGELMF---ESSSS-CGWVHGVCFSANGSRVA 217 (371)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTTTSCCC------CCBTTBSCCCTTCEEE---ECCCC-SSCEEEEEECSSSSEEE
T ss_pred cccccccceeccccCcEEEEEeeccCcccccc------ccccccccccceeeee---eccCc-cCcEEEEEeeccccccc
Confidence 99999999999999999999998653321111 11122211 122222 12237 88999999999999999
Q ss_pred EEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCC--ceEEE---------------
Q 001160 857 SAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRV--DEVKT--------------- 918 (1134)
Q Consensus 857 ~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~--~~~~~--------------- 918 (1134)
+++ |+.|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|.... +....
T Consensus 218 s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
T d1k8kc_ 218 WVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295 (371)
T ss_dssp EEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred ccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence 999 99999999999999999999999999999999 888888664 77776765432 11100
Q ss_pred ------------------------EecCcccceEEEEEecCC----CEEEEEcCCCcEEEEeCCCcc
Q 001160 919 ------------------------KLKGHQNRITGLAFSPTL----NALVSSGADAQLCMWSIDKWE 957 (1134)
Q Consensus 919 ------------------------~l~~h~~~i~~l~~s~d~----~~l~s~~~D~~i~iWd~~~~~ 957 (1134)
....|.+.|+++++.+++ ..++|+|.||.|++||+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 002488899999998864 368999999999999997644
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-29 Score=282.16 Aligned_cols=284 Identities=15% Similarity=0.247 Sum_probs=226.2
Q ss_pred cceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEE
Q 001160 336 TKTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRC 414 (1134)
Q Consensus 336 ~~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i 414 (1134)
+.++.++|+ |.+.|.+ +++++|+ +||||+.||+|+|||+.+++.+.+ +.+|.+.|.++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v 63 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSS 63 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEE
Confidence 344556666 9988865 4777887 689999999999999999987754 67899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec
Q 001160 415 VWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE 494 (1134)
Q Consensus 415 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~ 494 (1134)
+|+|+ +|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+..+++....+.
T Consensus 64 ~~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 64 QMRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp EEETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred EeCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeee
Confidence 99875 99999999999999998765433 3334555555555443 3 57888999999999999999888776
Q ss_pred CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeC
Q 001160 495 GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNE 574 (1134)
Q Consensus 495 ~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~ 574 (1134)
.+......... . ...+++++.|+.|++||.........+..+...+..+. +++.++++++. |+.|++||+
T Consensus 135 ~~~~~~~~~~~--~--~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~----dg~i~~~d~ 204 (342)
T d2ovrb2 135 GHVAAVRCVQY--D--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSL----DTSIRVWDV 204 (342)
T ss_dssp CCSSCEEEEEE--C--SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSSEEEEEET----TSCEEEEET
T ss_pred cccccceeecc--c--cceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCCEEEEEeC----CCeEEEeec
Confidence 55554444332 2 26899999999999999998888888888777666555 46789999875 788999999
Q ss_pred CCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCC-CCCCcceEEEccCCCEEEEEeCC
Q 001160 575 SEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADG-GLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
+.++.+..+.+|.. .+.+++++ ++++++++.|+.|++||....+....+..+. +...+.+ +.+++.++++++.|
T Consensus 205 ~~~~~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~s~D 279 (342)
T d2ovrb2 205 ETGNCIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQFNKNFVITSSDD 279 (342)
T ss_dssp TTCCEEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEECSSEEEEEETT
T ss_pred ccceeeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceee--cccCCCeeEEEcCC
Confidence 99999999999887 78777766 4699999999999999999998888886543 3334444 44556799999999
Q ss_pred CcEEEEECCCc
Q 001160 654 NGIKILANSDG 664 (1134)
Q Consensus 654 g~i~iw~~~~~ 664 (1134)
|+|++||++++
T Consensus 280 g~i~iwd~~tg 290 (342)
T d2ovrb2 280 GTVKLWDLKTG 290 (342)
T ss_dssp SEEEEEETTTC
T ss_pred CEEEEEECCCC
Confidence 99999999887
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.9e-30 Score=285.74 Aligned_cols=291 Identities=12% Similarity=0.195 Sum_probs=226.4
Q ss_pred CCeeEEEEecCCCeEEEEEeCC-CcEEEEEccCccccccccceeeccccccccccccccccC-CcCeEEEEEcC--CCCE
Q 001160 347 SNVMSMDFHPQQQTILLVGTNV-GDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA-AISVNRCVWGP--DGLM 422 (1134)
Q Consensus 347 ~~V~~v~~spdg~~llasg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~i~~sp--dg~~ 422 (1134)
..+++++|+|+|+. ++.++.+ ..|+.|+........ ...+.+| ...|++++|+| +|.+
T Consensus 18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 36789999999985 5555433 345556544332211 0114566 56899999998 6789
Q ss_pred EEEEeCCCeEEEEEcCCCCcccee-----eEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQH-----LEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHE 497 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~ 497 (1134)
||+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+..+++.+..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 999999999999999876554321 234568899999999999994333334567899999999999999999999
Q ss_pred CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe---cCCCCcEEEEEECCC-CCEEEEEeeCCCCCCcEEEEe
Q 001160 498 APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY---DAPGNWCTMMAYSAD-GTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 498 ~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~i~~wd 573 (1134)
..|.+++|++..+ .++++++.|+.+++||+...+..... ..+...|.+++|+|+ +.++++++. |+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEE
T ss_pred ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeee
Confidence 9999999988753 46888999999999999876655544 345668999999997 577888774 78899999
Q ss_pred CCCCeeEEEecCccCcceEEEEEe---CCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccC-CCEEEE
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFD---TTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKE-GSLLAV 649 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~ 649 (1134)
.++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|++||+++++++..+..+.+...+..+++.+. +.+|++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 999999999998776 55444444 6899999999999999999999999999987766555556665543 348899
Q ss_pred EeCCCcEEEEEC
Q 001160 650 TTSDNGIKILAN 661 (1134)
Q Consensus 650 ~~~dg~i~iw~~ 661 (1134)
++.||.|++||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.4e-29 Score=275.53 Aligned_cols=287 Identities=13% Similarity=0.123 Sum_probs=215.4
Q ss_pred cceEEEEEecCCcceEEeeccC-eeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc-
Q 001160 773 SKVVRLIYTNSGLSLLALASNA-VHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK- 850 (1134)
Q Consensus 773 ~~v~~~~~s~~g~~l~~~~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~- 850 (1134)
..+++++|+|+|+.|+.++.+. .++.|+...... .....+.+ |....|++++|+|
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~g--h~~~~v~~v~fsP~ 74 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTG--HGSSVVTTVKFSPI 74 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECT--TTTSCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeC--CCCCCEEEEEEeeC
Confidence 3567899999999988776553 355554321110 11111222 4257899999998
Q ss_pred -CCCEEEEEe-CCeEEEEECCCCe--------EEEEecCCCCceEEEEEcCCCCcEEEEEeC--CCcEEEEEcCCceEEE
Q 001160 851 -NDSYVMSAS-GGKVSLFNMMTFK--------VMTMFMSPPPAATFLAFHPQDNNIIAIGME--DSSVQIYNVRVDEVKT 918 (1134)
Q Consensus 851 -dg~~la~~s-dg~i~vwd~~~~~--------~~~~~~~~~~~i~~l~~s~~~~~~lasg~~--dg~i~iwd~~~~~~~~ 918 (1134)
+|++||+|+ ||+|+|||+..++ ....+..|.++|.+++|++ ++++|++++. ++.+++|+..+++++.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999999 9999999986532 2234567889999999999 8888887764 6789999999999999
Q ss_pred EecCcccceEEEEEecCCCE-EEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC-CcEEEE-EECC
Q 001160 919 KLKGHQNRITGLAFSPTLNA-LVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND-QTHLLV-VHES 995 (1134)
Q Consensus 919 ~l~~h~~~i~~l~~s~d~~~-l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd-g~~l~~-~~d~ 995 (1134)
.+.+|...|.+++|+|++.+ +++++.|+.+++||+.+.+... ......++. ..|.+++|+|| +.++++ +.|+
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~ 228 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR 228 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence 99999999999999999875 7789999999999998866432 222333333 56899999997 577777 5689
Q ss_pred eEEEEeC-CCcceeccCCCCCCCCCeEEEEEc---cCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 996 QISVYDS-KLECSRSWSPKDALPAPISSAIYS---CDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 996 ~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s---~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
.|++||+ +++.+..+. +|..++.++.|+ +||++|++++.|+.|+|||+.+++.+..+..+.. .....
T Consensus 229 ~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~ 299 (325)
T d1pgua1 229 KISCFDGKSGEFLKYIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQ 299 (325)
T ss_dssp CEEEEETTTCCEEEECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGC
T ss_pred ceeeeeecccccccccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC------cccCe
Confidence 9999999 666666553 345566555555 7899999999999999999999999887764421 11133
Q ss_pred cEEEeecCCCCCEEEEEeCCCcEEEEec
Q 001160 1072 PLVIAPHPSEPNQIALGMSDGAVHVVEP 1099 (1134)
Q Consensus 1072 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~~ 1099 (1134)
.+++.+.+ +.+|++|+.||+|++||+
T Consensus 300 ~~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 300 QVGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEEECC--CCEEEEEECCCEEEEEEC
Confidence 44555544 358999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.5e-27 Score=268.51 Aligned_cols=342 Identities=15% Similarity=0.180 Sum_probs=223.0
Q ss_pred EEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCee------EEEEeCCCCCCCcceEE------Ecc-CCCEE
Q 001160 581 RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNM------LTTVDADGGLPASPRLR------FNK-EGSLL 647 (1134)
Q Consensus 581 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~------~s~-d~~~l 647 (1134)
...++|.. .|.++++++ +++++++.|+.|++||..+.+. ......+ ...+..+. .+. ++.++
T Consensus 8 ~~~~~H~~-~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 82 (393)
T d1sq9a_ 8 NAGKAHDA-DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH--KSGLHHVDVLQAIERDAFELCLV 82 (393)
T ss_dssp EESSCSSS-CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC--TTCEEEEEEEEEEETTTEEEEEE
T ss_pred ecCCcccC-ccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeec--cCCceEeeeEeeeccCCCCCcEE
Confidence 44567777 899998864 6999999999999999765431 1122222 11221121 111 34578
Q ss_pred EEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCC
Q 001160 648 AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGT 727 (1134)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1134)
++++.||.|++|++..... ...+..+...
T Consensus 83 ~s~~~dg~v~~w~~~~~~~-~~~~~~~~~~-------------------------------------------------- 111 (393)
T d1sq9a_ 83 ATTSFSGDLLFYRITREDE-TKKVIFEKLD-------------------------------------------------- 111 (393)
T ss_dssp EEEETTSCEEEEEEEECTT-TCCEEEEEEC--------------------------------------------------
T ss_pred EEEeCCCcEEEEEccCCCc-eeeeeccccc--------------------------------------------------
Confidence 8999999999999865521 1111110000
Q ss_pred CCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecC-----CcceEEeeccCeeEEeecc
Q 001160 728 IDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNS-----GLSLLALASNAVHKLWKWQ 802 (1134)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~~dg~v~vw~~~ 802 (1134)
.+....+...+..+++.++ +.++++++.||.+++|++.
T Consensus 112 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~ 154 (393)
T d1sq9a_ 112 -------------------------------------LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154 (393)
T ss_dssp -------------------------------------CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred -------------------------------------eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEee
Confidence 0000113344555666554 4678899999999999986
Q ss_pred cccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEe----
Q 001160 803 RTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMF---- 877 (1134)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~---- 877 (1134)
....... .... .................+ ...+.+++|+||+ +||+|+ ||+|+|||+.+++.+..+
T Consensus 155 ~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~ 225 (393)
T d1sq9a_ 155 PFADESN-----SLTL--NWSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 225 (393)
T ss_dssp SSSSHHH-----HTTT--CCCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred cCCcccc-----eeee--eeccceecccceecccCC-CCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence 4221000 0000 000000000000111114 6678999999998 889998 999999999999887654
Q ss_pred --cCCCCceEEEEEcCCCCcEEEEEeCCCc---EEEEEcCCceEEEEec-------------CcccceEEEEEecCCCEE
Q 001160 878 --MSPPPAATFLAFHPQDNNIIAIGMEDSS---VQIYNVRVDEVKTKLK-------------GHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 878 --~~~~~~i~~l~~s~~~~~~lasg~~dg~---i~iwd~~~~~~~~~l~-------------~h~~~i~~l~~s~d~~~l 939 (1134)
.+|...|.+++|+| ++++|++|+.|++ |++||+.+++++..+. +|.+.|++|+|+||+++|
T Consensus 226 ~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l 304 (393)
T d1sq9a_ 226 SMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304 (393)
T ss_dssp ---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence 46889999999999 9999999999874 9999999998877764 899999999999999999
Q ss_pred EEEcCCCcEEEEeCCCcccccceeeecCCCCCCCC-cCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCC
Q 001160 940 VSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPL-VGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPA 1018 (1134)
Q Consensus 940 ~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~ 1018 (1134)
+|+|.|++|++||+++++. +..+.+|.... .....++|+|+|..++++....+..|+- +..... .
T Consensus 305 ~S~s~D~~v~vWd~~~g~~-----~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~------ 370 (393)
T d1sq9a_ 305 CSAGWDGKLRFWDVKTKER-----ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK-GWRSGM--G------ 370 (393)
T ss_dssp EEEETTSEEEEEETTTTEE-----EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT-TTSBST--T------
T ss_pred EEECCCCEEEEEECCCCCE-----EEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECcc-Cceecc--c------
Confidence 9999999999999999874 44455665321 2234688999999877543222332222 111000 0
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001160 1019 PISSAIYSCDGLLVYAGFCDGAIGVFDA 1046 (1134)
Q Consensus 1019 ~v~~v~~s~dg~~l~~~~~dg~I~vwd~ 1046 (1134)
....+.+++++.|+.|++|..
T Consensus 371 -------~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 371 -------ADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp -------CTTSCEEEEEETTTEEEEEEE
T ss_pred -------cCCCCEEEEEEcCCeEEEEeC
Confidence 122446889999999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=4.8e-27 Score=267.68 Aligned_cols=368 Identities=11% Similarity=0.035 Sum_probs=268.5
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
.++++.+.||+|.|||..+++.+.. +..| ..+..++|||||+++++++.|+.|.+||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 3568889999999999999998764 3334 3699999999999999999999999999988
Q ss_pred CCcc--ceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEE
Q 001160 440 TGEL--RQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST 517 (1134)
Q Consensus 440 ~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 517 (1134)
++.. ..+....+|.+.+.+.+|+|||+. ++++++.+++|++||..+++.+..+..|...+..+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-------- 163 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence 7643 222223356777788889999994 45788999999999999999999888776555444443322
Q ss_pred ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEe
Q 001160 518 AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFD 597 (1134)
Q Consensus 518 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 597 (1134)
....+.++|+|..++.... .++.|.+||..+++.........+.....++|+
T Consensus 164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 3345678899988776553 477899999988776554443334467889999
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCC---CCCCcceEEEccCCCEEEEEe-CCCcEEEEECCCchhhhhhhc
Q 001160 598 TTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG---GLPASPRLRFNKEGSLLAVTT-SDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 598 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
|+|+++++++ .++.+.++|..+++....+.... +........+...+...++.. .++.|.+|+..... .
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~- 289 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----H- 289 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----C-
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----c-
Confidence 9999888766 56789999999999888775432 112223334444444444433 26677777654320 0
Q ss_pred CCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceecc
Q 001160 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1134)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1134)
T Consensus 290 -------------------------------------------------------------------------------- 289 (432)
T d1qksa2 290 -------------------------------------------------------------------------------- 289 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccc
Q 001160 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1134)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 832 (1134)
..+...+...++++++..+++++.++..++|......
T Consensus 290 ----------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------- 326 (432)
T d1qksa2 290 ----------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------------------------- 326 (432)
T ss_dssp ----------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC---------------------------
T ss_pred ----------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccCC---------------------------
Confidence 0134557788999999999999999999999743110
Q ss_pred cCCCCCCCCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEe-----CCCcE
Q 001160 833 INESKPTEESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGM-----EDSSV 906 (1134)
Q Consensus 833 ~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~-----~dg~i 906 (1134)
. | ......+++ ||++.+++++ |+.+++|++.++. .+..|...+.+++||| ||++|+++. .+|.|
T Consensus 327 --~--~-~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i 396 (432)
T d1qksa2 327 --P--E-AEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESAL 396 (432)
T ss_dssp --S--S-HHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEE
T ss_pred --C--C-CCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcE
Confidence 0 2 333344565 9999999999 8999999986553 2345777899999999 888775553 46899
Q ss_pred EEEEcCCceEEEEecCc
Q 001160 907 QIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h 923 (1134)
.|||..++++...+++.
T Consensus 397 ~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 397 VVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EEEETTTTEEEEEECCT
T ss_pred EEEECCCceEEeEecCC
Confidence 99999999998888764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.2e-27 Score=255.02 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=217.5
Q ss_pred eeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEE
Q 001160 446 HLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKA 525 (1134)
Q Consensus 446 ~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~ 525 (1134)
..++.||..+|++++|+| |+||+.||+|++||+.++. .+|...|.++++++. ..+++++.|+++++
T Consensus 6 i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA---QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST---TCCEEEETTTEEEE
T ss_pred eEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC---CeEEEEeecccccc
Confidence 448899999999999975 7999999999999987643 579999999998754 57899999999999
Q ss_pred EEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEE
Q 001160 526 WLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 605 (1134)
|++...+ ....+..+++++++..++++. +..+.+|+..+++.+..+.... . ..+++++++.+++
T Consensus 72 w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v 135 (287)
T d1pgua2 72 NGITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVAV 135 (287)
T ss_dssp TTEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEEEE
T ss_pred ccccccc-------cccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc--e--eeeeeccCcceee
Confidence 9875421 234577889999988888764 5568999999999888877543 2 3456778888888
Q ss_pred EeCC-CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCC
Q 001160 606 AGDE-FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSE 684 (1134)
Q Consensus 606 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1134)
++.+ +.+++|++...+....+... +...+.+++|+|++.+|++|+.||.|++||+.++......+
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------------- 201 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW------------- 201 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-------------
T ss_pred eccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeecccccccccc-------------
Confidence 8766 47999999876665555432 33478999999999999999999999999987662111000
Q ss_pred CCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEe
Q 001160 685 PISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKAL 764 (1134)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 764 (1134)
T Consensus 202 -------------------------------------------------------------------------------- 201 (287)
T d1pgua2 202 -------------------------------------------------------------------------------- 201 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceE
Q 001160 765 RLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAA 844 (1134)
Q Consensus 765 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~ 844 (1134)
..|...|.+++|+|++...
T Consensus 202 ----~~h~~~v~~~~~~p~~~~~--------------------------------------------------------- 220 (287)
T d1pgua2 202 ----AFRTSKINAISWKPAEKGA--------------------------------------------------------- 220 (287)
T ss_dssp ----CCCSSCEEEEEECCCC------------------------------------------------------------
T ss_pred ----cccccccceeeeccccccc---------------------------------------------------------
Confidence 1256778888888776421
Q ss_pred EEEeccCCCEEEEEe-CCeEEEEECCC-CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEc
Q 001160 845 CIALSKNDSYVMSAS-GGKVSLFNMMT-FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNV 911 (1134)
Q Consensus 845 ~~~~s~dg~~la~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~ 911 (1134)
..+.+++.++|+|+ |++|+|||+++ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 221 -~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 221 -NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred -ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 22345778999999 99999999976 567788889999999999999 66 5788999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=249.06 Aligned_cols=269 Identities=11% Similarity=0.142 Sum_probs=213.4
Q ss_pred ceEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEE
Q 001160 337 KTVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCV 415 (1134)
Q Consensus 337 ~~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~ 415 (1134)
.+++++|. |.++|++++|+| |++|+.||+|++||+.++. .+|...|.+++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~------------------------~~h~~~V~~~~ 53 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH------------------------QDHSNLIVSLD 53 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE------------------------CCCCSCEEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC------------------------CCCCCCEEEEE
Confidence 46788888 999999999987 7899999999999987653 35999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecC
Q 001160 416 WGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 416 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 495 (1134)
|++++ .+++++.|+++++|++... .....+.++++++++. .+++++ ++.+.+|+..+++.+..+..
T Consensus 54 ~~~~~-~~~s~s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (287)
T d1pgua2 54 NSKAQ-EYSSISWDDTLKVNGITKH----------EFGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRL 119 (287)
T ss_dssp CCSTT-CCEEEETTTEEEETTEEEE----------ECSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEEC
T ss_pred ecCCC-eEEEEeecccccccccccc----------ccccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeeccc
Confidence 99765 5789999999999997642 1334577889999887 555554 66789999999998888764
Q ss_pred CCCCeEEEEeeccCCccEEEEEecC-CeEEEEEccCCCceeEec-CCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEe
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAID-GKIKAWLYDYLGSRVDYD-APGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWN 573 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd 573 (1134)
+ ..+.++ ++.+ ..+++++.+ +.+++|++...+....+. .+...+++++|+|++++|++++. ++.|++||
T Consensus 120 ~-~~~~~~--~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d 190 (287)
T d1pgua2 120 N-SPGSAV--SLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD 190 (287)
T ss_dssp S-SCEEEE--EECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred c-ceeeee--eccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence 3 444444 4443 566666665 579999987665555443 35678999999999999999975 77899999
Q ss_pred CCCCeeEEE-ecCccCcceEEEEEeCC----------CCEEEEEeCCCeEEEEECCC-CeeEEEEeCCCCCCCcceEEEc
Q 001160 574 ESEGAIKRT-YSGFRKRSLGVVQFDTT----------RNRFLAAGDEFQIKFWDMDN-MNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 574 ~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
+.+++.... +.+|.. .|.+++|+|. +.++++|+.|+.|++||+++ ++.+..+.+| ...|.+++|+
T Consensus 191 ~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~ 267 (287)
T d1pgua2 191 LQSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWE 267 (287)
T ss_dssp TTTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEE
T ss_pred eccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEEC
Confidence 999887654 556665 8999999875 46899999999999999977 4455555555 4589999999
Q ss_pred cCCCEEEEEeCCCcEEEEEC
Q 001160 642 KEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 642 ~d~~~l~~~~~dg~i~iw~~ 661 (1134)
|++ .|++++.|+.|++|++
T Consensus 268 ~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 268 TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETT-EEEEEETTSCEEEEEE
T ss_pred CCC-EEEEEECCCeEEEEEE
Confidence 986 5889999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-25 Score=241.81 Aligned_cols=268 Identities=21% Similarity=0.296 Sum_probs=218.3
Q ss_pred CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 345 QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
|...|+|++| ||+ +||+|+.||+|+|||+.+++.+.. +.+|.+.|.+++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--ccceee
Confidence 6788998755 787 789999999999999999887754 6789999999887 678999
Q ss_pred EEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee---eEEecCCCCCeE
Q 001160 425 VAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK---QYTFEGHEAPVY 501 (1134)
Q Consensus 425 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 501 (1134)
+|+.|+.|++|++..+.... ....+. .....+.+... .++++..++.+.+||..+... ...+..|...|.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHC--EAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCC--SCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccc---cccccc--ccccccccccc--ceeecccccceeEeeccccccccccccccccccccc
Confidence 99999999999999876543 222222 23344555566 689999999999999887553 445677888998
Q ss_pred EEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 502 SVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 502 ~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
.+.+.+ ..+++++.|+.|++||+.+.+....+..+...+..+.++ +.++++++. |+.|++||++++..+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEEE
T ss_pred cceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceeee
Confidence 887754 578899999999999999999888888888888887775 568888874 7889999999999999
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCC---------CeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDN---------MNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
.+.++.. .+. .+++++.+|++++.||.|++||+.. ...+..+..|. ..|.+++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--SSCEEECCS
T ss_pred eecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--CCEEEEEec
Confidence 9988776 554 4567889999999999999999743 34567777664 478999984 678999999
Q ss_pred CCcEEEEE
Q 001160 653 DNGIKILA 660 (1134)
Q Consensus 653 dg~i~iw~ 660 (1134)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-25 Score=254.56 Aligned_cols=267 Identities=9% Similarity=0.076 Sum_probs=199.9
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---cceeeEEecccCCeeEEEEe---c-CC-CcEEEEEEcC
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGE---LRQHLEIDAHVGGVNDIAFA---H-PN-KQLCIVTCGD 475 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~l~~s---~-d~-~~~~l~sg~~ 475 (1134)
.++|.+.|.++++++ +++++|+.|++|+|||..+.+. .........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 578999999999875 6999999999999999876543 11222233455554433321 1 11 1126789999
Q ss_pred CCcEEEEECCCCeeeE-----Ee-----cCCCCCeEEEEeeccCC---ccEEEEEecCCeEEEEEccCCCc---------
Q 001160 476 DKMIKVWDVVAGRKQY-----TF-----EGHEAPVYSVCPHHKES---IQFIFSTAIDGKIKAWLYDYLGS--------- 533 (1134)
Q Consensus 476 d~~i~iwd~~~~~~~~-----~~-----~~h~~~v~~i~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~--------- 533 (1134)
|+.|++|++....... .. ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 9999999976443221 11 12456677888776543 47899999999999999853221
Q ss_pred ---------eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEec------CccCcceEEEEEeC
Q 001160 534 ---------RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYS------GFRKRSLGVVQFDT 598 (1134)
Q Consensus 534 ---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~------~~~~~~v~~~~~~~ 598 (1134)
......+...+.+++|+|++ ++++++. |+.|++||+.+++++..+. +|.. .|.+++|+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~sp 241 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFSP 241 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEECS
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEccccc
Confidence 00112334468899999998 7788764 8889999999998877654 4555 899999999
Q ss_pred CCCEEEEEeCCC---eEEEEECCCCeeEEEEeCC-----------CCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 599 TRNRFLAAGDEF---QIKFWDMDNMNMLTTVDAD-----------GGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 599 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
+|++|++|+.|+ .|++||+.+++.+..+... +|...|++++|+||+++|++++.|++|++||+.++
T Consensus 242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 999999999886 5999999999988887521 34567999999999999999999999999999999
Q ss_pred hhhhhhhcCCccccc
Q 001160 665 VRLLRMLEGRAMDKN 679 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~ 679 (1134)
+++..+.+|...+.
T Consensus 322 -~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 322 -ERITTLNMHCDDIE 335 (393)
T ss_dssp -EEEEEEECCGGGCS
T ss_pred -CEEEEECCcCCccc
Confidence 78888999987653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.8e-26 Score=253.91 Aligned_cols=292 Identities=9% Similarity=0.074 Sum_probs=211.7
Q ss_pred eEEEEec-CCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 338 TVVRTLN-QGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 338 ~~~~~l~-h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
+.++.++ |++.|++|+|||+|+ +||+|+.||+|+|||+.++...... ....+|.++|.+++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~----------------~~~~~h~~~V~~v~f 64 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNF 64 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEE----------------EEecCCCCCEEEEEE
Confidence 3455555 899999999999998 7889999999999999876543210 012369999999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeee----
Q 001160 417 GPD-GLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQ---- 490 (1134)
Q Consensus 417 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~---- 490 (1134)
+|+ +.+|++|+.|+.|++|++..+.... ....+. .......+.+++. .+++++.|+++++||++++...
T Consensus 65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence 986 5589999999999999998876554 233333 3344555566666 7999999999999998654332
Q ss_pred EEecCCC--CCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEEC-CCCCEEEEEeeCCC
Q 001160 491 YTFEGHE--APVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYS-ADGTRLFSCGTSKE 564 (1134)
Q Consensus 491 ~~~~~h~--~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~ 564 (1134)
.....+. .......+.+.. ..+++++.|+.|++||+....... ........+.+..+. .++..+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--- 214 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred cccccccccceeeeeeeeccC--CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence 2233332 223344444443 789999999999999998766533 223334455555554 46677777764
Q ss_pred CCCcEEEEeCCCCeeE---------EE------ecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCC
Q 001160 565 GESHLVEWNESEGAIK---------RT------YSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDAD 629 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~---------~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1134)
++.+.+|+....... .. ...|. ..+++++|+|++++|++|+.||.|++||+.+++.+..+..+
T Consensus 215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~ 292 (342)
T d1yfqa_ 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred -CCeEEEEEecCCcceeeccccceeeeeeeccCCCccc-ccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 778999987643211 11 11222 26889999999999999999999999999999998877543
Q ss_pred CCCCCcceEEEccCCCEEEEEeCCCcEEEEEC
Q 001160 630 GGLPASPRLRFNKEGSLLAVTTSDNGIKILAN 661 (1134)
Q Consensus 630 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~ 661 (1134)
..+..++|+|+++++++++.|+.+++|..
T Consensus 293 ---~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 293 ---NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred ---CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 24567889999999999999988777753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.6e-25 Score=238.11 Aligned_cols=235 Identities=15% Similarity=0.255 Sum_probs=191.1
Q ss_pred cccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 404 LNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 404 l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
..+|...|+|++ +||++||+|+.||+|+|||+.+++.+. .+.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 456888899875 489999999999999999999987665 78899999999887 566 899999999999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee---EecCCCCcEEEEEECCCCCEEEEEe
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV---DYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
+..+........+......... . ...++++..++.+++||........ .+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF--N--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC--C--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc--c--ccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 9999888777665555444432 2 2689999999999999998766433 4556677777777654 4566665
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEE
Q 001160 561 TSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRF 640 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 640 (1134)
. ++.+++||.++++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+.+.+.....+.. .+ ..+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 3 78899999999999999998876 67666665 57899999999999999999999988876533 33 356
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCc
Q 001160 641 NKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 641 s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
++++.+|++++.||.|++||+.+.
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHH
T ss_pred cccceEEEEEcCCCEEEEEECCCC
Confidence 778899999999999999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.9e-25 Score=255.46 Aligned_cols=363 Identities=10% Similarity=0.029 Sum_probs=245.2
Q ss_pred EEecCCCe-EEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCe
Q 001160 353 DFHPQQQT-ILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHI 431 (1134)
Q Consensus 353 ~~spdg~~-llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~ 431 (1134)
.+++|.+. ++++.+.||+|+|||+.+++.+.+ +..| ..+..++|||||++|++++.|++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~ 84 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR 84 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence 35555443 457788899999999999988764 3444 45899999999999999999999
Q ss_pred EEEEEcCCCCccc--eeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccC
Q 001160 432 VHLYTYNPTGELR--QHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKE 509 (1134)
Q Consensus 432 i~iwd~~~~~~~~--~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 509 (1134)
|++||+.+++... ......+|...+.+++|+|||+. +++++..++.+.+||..++.++..+.+|...+..+.+.+.+
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence 9999999887532 12223357777888899999995 35666789999999999999999988888777766665543
Q ss_pred CccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE-EecCccC
Q 001160 510 SIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR-TYSGFRK 588 (1134)
Q Consensus 510 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~ 588 (1134)
. ...+.. ++++..++.... +.+.+.+++..++.... ....+..
T Consensus 164 ~-~~~i~~--------------------------------s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 164 R-VAAIIA--------------------------------SHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp C-EEEEEE--------------------------------CSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCS
T ss_pred c-eeEEEE--------------------------------CCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCC
Confidence 2 233333 344444443321 23445555555443222 1222233
Q ss_pred cceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCE-EE--EEeCCCcEEEEECCCc
Q 001160 589 RSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSL-LA--VTTSDNGIKILANSDG 664 (1134)
Q Consensus 589 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~--~~~~dg~i~iw~~~~~ 664 (1134)
.+..+.|+|++++++++. .+..+.+++..+++.+................+..++.. +. ..+.++.+.+|+....
T Consensus 208 -~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 208 -FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp -SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred -ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 678899999999988866 667899999999999888875544333444444443321 11 2233556666554332
Q ss_pred hhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCccccccccccccccc
Q 001160 665 VRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDV 744 (1134)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1134)
..
T Consensus 287 ~~------------------------------------------------------------------------------ 288 (426)
T d1hzua2 287 NH------------------------------------------------------------------------------ 288 (426)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCC
Q 001160 745 DKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPP 824 (1134)
Q Consensus 745 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 824 (1134)
.+|
T Consensus 289 ---~~~-------------------------------------------------------------------------- 291 (426)
T d1hzua2 289 ---PQY-------------------------------------------------------------------------- 291 (426)
T ss_dssp ---TTT--------------------------------------------------------------------------
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCccccccCCCCCCCCceEEEEeccCCCEEEE-------Ee-CCeEEEEECCCCeEEEEe---------cCCCCceEEE
Q 001160 825 SGTLMTNDINESKPTEESAACIALSKNDSYVMS-------AS-GGKVSLFNMMTFKVMTMF---------MSPPPAATFL 887 (1134)
Q Consensus 825 ~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~-------~s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l 887 (1134)
.++.. ..+.+ | ...+..++|+||+++|++ ++ +++|+|||+.+++...++ ..|...|.++
T Consensus 292 ~~~~~-~~l~g--~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 292 AWKKV-AELQG--Q-GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp BTSEE-EEEEC--S-SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE
T ss_pred cceEe-EEEec--C-CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE
Confidence 00000 00122 5 667888899999998885 33 689999999998765543 2456679999
Q ss_pred EEcCCCCcEEE-EE----eCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEE
Q 001160 888 AFHPQDNNIIA-IG----MEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNAL 939 (1134)
Q Consensus 888 ~~s~~~~~~la-sg----~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l 939 (1134)
+||| ||++++ ++ +.+|.|+|||..+++....++++. .++|+|++-
T Consensus 368 ~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 368 EYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EECS-SSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EECC-CCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 9999 787664 32 367889999999999999998774 336777764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=5.3e-26 Score=251.61 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=190.5
Q ss_pred ccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEE
Q 001160 403 LLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVW 482 (1134)
Q Consensus 403 ~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iw 482 (1134)
++.+|++.|++++|+|++++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 46789999999999999999999999999999999887655444445579999999999998654 79999999999999
Q ss_pred ECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe----cC--CCCcEEEEEECCCCCEE
Q 001160 483 DVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY----DA--PGNWCTMMAYSADGTRL 556 (1134)
Q Consensus 483 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~--~~~~v~~~~~s~~~~~l 556 (1134)
++..+........+...+....+.+. +...+++++.|+++++||++........ .. .........+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 99988877776665555444433322 2378999999999999998765443322 11 12244566777888899
Q ss_pred EEEeeCCCCCCcEEEEeCCCCeeEEE---ecCccCcceEEEE-EeCCCCEEEEEeCCCeEEEEECCCCeeE------EEE
Q 001160 557 FSCGTSKEGESHLVEWNESEGAIKRT---YSGFRKRSLGVVQ-FDTTRNRFLAAGDEFQIKFWDMDNMNML------TTV 626 (1134)
Q Consensus 557 ~~~~~~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~ 626 (1134)
++++. ++.|++||+........ ...... .+.+.. +..++..+++++.||.+.+|+....... ..+
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeeccccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 98875 78899999987654322 222222 344444 4456788999999999999998653211 111
Q ss_pred e-------CCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 627 D-------ADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 627 ~-------~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
. ...+...+.+++|+|++++|++|+.||.|++||+.++
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 1 1123446789999999999999999999999999877
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=1.4e-26 Score=259.12 Aligned_cols=221 Identities=14% Similarity=0.100 Sum_probs=170.5
Q ss_pred eeEEEEec-CCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe
Q 001160 349 VMSMDFHP-QQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF 427 (1134)
Q Consensus 349 V~~v~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~ 427 (1134)
+..-.||| ||+ ++|+++ +|.|.+||+.++.... .+|...|.+++|||||++|++++
T Consensus 5 ~~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~ 61 (360)
T d1k32a3 5 KFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHG 61 (360)
T ss_dssp GGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEE
T ss_pred hhcccccCCCCC-EEEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEE
Confidence 34567999 998 566665 6899999998876543 25899999999999999999876
Q ss_pred CCC--eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 428 SKH--IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 428 ~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
.+. .|++||+.+++.. .+..|...|.+++|+|||+ +|++++.++.+++|++.+++....+..|...+.+++|
T Consensus 62 ~~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (360)
T d1k32a3 62 TREGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135 (360)
T ss_dssp ETTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred cCCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhh
Confidence 653 7999999987543 4668999999999999999 8999999999999999999999999999999999999
Q ss_pred eccCCccEEEEEe----------cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCC
Q 001160 506 HHKESIQFIFSTA----------IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNES 575 (1134)
Q Consensus 506 ~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~ 575 (1134)
+|++ ++|+.++ .++.+++||+.+.+. .....+...+..++|+|||++|++++. ++.+.+|+..
T Consensus 136 spdg--~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~ 208 (360)
T d1k32a3 136 SDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRV 208 (360)
T ss_dssp CTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSS
T ss_pred ccce--eeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeC----CCceEccccc
Confidence 8865 7887553 455799999986544 444556778899999999999999874 6678899876
Q ss_pred CCeeE-------EEecCccCcceEEEEEeCCCCEEEEE
Q 001160 576 EGAIK-------RTYSGFRKRSLGVVQFDTTRNRFLAA 606 (1134)
Q Consensus 576 ~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~ 606 (1134)
..... ..+..+.. .+..+.|++++..++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~ 245 (360)
T d1k32a3 209 VLNFSFEVVSKPFVIPLIPG-SPNPTKLVPRSMTSEAG 245 (360)
T ss_dssp SSCEECCSCBEEEEEESSTT-CCCGGGCCCGGGSCCCC
T ss_pred ccceeeccccceEEEecccC-ccccceECCCcCccccc
Confidence 54332 22222222 33334556666555443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=5.6e-26 Score=254.11 Aligned_cols=196 Identities=11% Similarity=0.021 Sum_probs=162.1
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC--CcEEEEECCCCee
Q 001160 413 RCVWGP-DGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD--KMIKVWDVVAGRK 489 (1134)
Q Consensus 413 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d--~~i~iwd~~~~~~ 489 (1134)
.-.||| ||+++|+++ +|.|++||+.++...+ + +|...|.+++|+|||+ .|++++.+ ..|++||+.+++.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE
Confidence 457999 999999986 5789999998875442 2 6999999999999999 56555433 4799999988765
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC------C
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS------K 563 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~------~ 563 (1134)
..+..|...|.+++|+|++ .+|++++.++.+++|++.+......+..+...+.+++|+|||++|+.+..+ .
T Consensus 79 -~~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~ 155 (360)
T d1k32a3 79 -EKFEENLGNVFAMGVDRNG--KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155 (360)
T ss_dssp -EECCCCCCSEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred -EEeeCCCceEEeeeecccc--cccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence 4677899999999998855 899999999999999999999888888888899999999999999876532 2
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMN 621 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1134)
..++.+++||..+++....... .. .+..++|+|+|++|++++.++.+.+|+.....
T Consensus 156 ~~~~~~~v~d~~~~~~~~~~~~-~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 156 YVMQAIHVYDMEGRKIFAATTE-NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CCEEEEEEEETTTTEEEECSCS-SS-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred ccccceeeeccccCceeeeccc-cc-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 3456799999998877655443 33 67889999999999999999999999976543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=4.6e-25 Score=251.17 Aligned_cols=353 Identities=10% Similarity=0.056 Sum_probs=255.9
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeE--EEEeC-CCCCCCcceEEEc
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNML--TTVDA-DGGLPASPRLRFN 641 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-~~~~~~v~~~~~s 641 (1134)
.++.|.+||..+++++..+..+. .+..++|+|||+++++++.|+.|++||+.+++.. ..+.. ..+...+.+.+|+
T Consensus 40 d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 48889999999999999998774 5889999999999999999999999999887643 33332 1222234556678
Q ss_pred cCCCEE-EEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001160 642 KEGSLL-AVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1134)
Q Consensus 642 ~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1134)
|||++| ++++.++.|++||..++ +....+..+.......
T Consensus 118 pDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~--------------------------------------- 157 (432)
T d1qksa2 118 WEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQ--------------------------------------- 157 (432)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTC---------------------------------------
T ss_pred CCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccce---------------------------------------
Confidence 899986 67888999999999888 5555444433211100
Q ss_pred ccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEE-eeccCeeEEe
Q 001160 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLA-LASNAVHKLW 799 (1134)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~dg~v~vw 799 (1134)
. ..+......+.++|+|..++. ...++.+.+|
T Consensus 158 ------------------------------------------~-----~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~ 190 (432)
T d1qksa2 158 ------------------------------------------E-----YHPEPRVAAILASHYRPEFIVNVKETGKILLV 190 (432)
T ss_dssp ------------------------------------------C-----EESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred ------------------------------------------e-----ccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence 0 013345677889999987654 4556889988
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEe
Q 001160 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF 877 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~ 877 (1134)
+....+. ..++. +. + ...+..++|+|||+++++++ ++.+.++|..+++....+
T Consensus 191 d~~~~~~-----------~~~~~----------i~---~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 191 DYTDLNN-----------LKTTE----------IS---A-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 245 (432)
T ss_dssp ETTCSSE-----------EEEEE----------EE---C-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EccCCCc-----------ceEEE----------Ec---c-cCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence 7542110 01111 11 2 55678999999999998887 578999999999888776
Q ss_pred cC-----CCCceEEEEEcCCCCcEEEEEe-CCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEE
Q 001160 878 MS-----PPPAATFLAFHPQDNNIIAIGM-EDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMW 951 (1134)
Q Consensus 878 ~~-----~~~~i~~l~~s~~~~~~lasg~-~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iW 951 (1134)
.. |........+.. .+...++.. .|+.|.+|+..... +..|...|....++|++..+++++.+.+.++|
T Consensus 246 ~~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw 320 (432)
T d1qksa2 246 DTGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320 (432)
T ss_dssp ECSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred ccCccccccCcccceecCC-CCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCcccee
Confidence 53 334455556655 566555543 47899999876543 45677889999999999999999999999999
Q ss_pred eCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCC
Q 001160 952 SIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDG 1029 (1134)
Q Consensus 952 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg 1029 (1134)
+..+... +. .....+++ ||++.+++ +.|+.+++|++ ++..+ ..|...|.+++|||||
T Consensus 321 ~~~~~~~-----------~~---~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l------~~~~~~v~~~~fS~DG 379 (432)
T d1qksa2 321 VDATLNP-----------EA---EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI------TEGQPRVVQGEFNKDG 379 (432)
T ss_dssp EECTTCS-----------SH---HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC------CSSCCEEEEEEECTTS
T ss_pred ecccCCC-----------CC---CeeeEEEE-EechhhcccccCCceEeccccccccc------CCCCCcEEEeEECCCC
Confidence 8765431 11 11234555 99999999 57899999998 33221 2346789999999999
Q ss_pred CEEEEEe-----cCCcEEEEeCCCcceeeecCC
Q 001160 1030 LLVYAGF-----CDGAIGVFDAETLRFRCRIGP 1057 (1134)
Q Consensus 1030 ~~l~~~~-----~dg~I~vwd~~~~~~~~~~~~ 1057 (1134)
++|+.+. .+|.|.|||..|+++...+..
T Consensus 380 ~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 380 TEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence 9886654 468899999999999887764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=5e-24 Score=243.59 Aligned_cols=338 Identities=11% Similarity=0.097 Sum_probs=231.5
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEe--CC-CCCCCcceEEEc
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVD--AD-GGLPASPRLRFN 641 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~-~~~~~v~~~~~s 641 (1134)
.++.|++||+.+++.+.++..+. .+..++|+|||+++++++.|+.|++||+.+++...... .. .+...+.+++|+
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~~g~--~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s 117 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVIDTGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG 117 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEECCS--SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence 48899999999999999999875 58899999999999999999999999999887654432 11 222235567788
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCc
Q 001160 642 KEGSLLAVT-TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAV 720 (1134)
Q Consensus 642 ~d~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1134)
|||++++++ ..++.+++||..++ .....+..+...+...
T Consensus 118 pDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~--------------------------------------- 157 (426)
T d1hzua2 118 YEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQ--------------------------------------- 157 (426)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSC---------------------------------------
T ss_pred CCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccce---------------------------------------
Confidence 999987554 57899999999887 4444444332211100
Q ss_pred ccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeecc-CeeEEe
Q 001160 721 SISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASN-AVHKLW 799 (1134)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g~v~vw 799 (1134)
. ..+......+++++++..++....+ +.+.++
T Consensus 158 ------------------------------------------~-----~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 158 ------------------------------------------T-----YHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp ------------------------------------------C-----EESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred ------------------------------------------e-----ecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 0 0022344567777888776655443 455444
Q ss_pred ecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEe
Q 001160 800 KWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMF 877 (1134)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~ 877 (1134)
+.. .+......... + ...+..++|+|++++++++. +..+.+++..+++.+...
T Consensus 191 ~~~----------------------~~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 191 NYK----------------------DIDNLTVTSIG--A-APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV 245 (426)
T ss_dssp ECS----------------------SSSSCEEEEEE--C-CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred Eec----------------------cccceeeEEec--c-CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence 332 11111100111 3 67789999999999999887 578999999999988776
Q ss_pred cCC--CCceEEEEEcCCCCcEE--EEEeCCCcEEEEEcCC-------ceEEEEecCcccceEEEEEecCCCEEEE-----
Q 001160 878 MSP--PPAATFLAFHPQDNNII--AIGMEDSSVQIYNVRV-------DEVKTKLKGHQNRITGLAFSPTLNALVS----- 941 (1134)
Q Consensus 878 ~~~--~~~i~~l~~s~~~~~~l--asg~~dg~i~iwd~~~-------~~~~~~l~~h~~~i~~l~~s~d~~~l~s----- 941 (1134)
... ........+.......+ ++.+.|+.+.+|+... ++....+.+|...+..++|+||+++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~ 325 (426)
T d1hzua2 246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325 (426)
T ss_dssp ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence 532 22233344333122222 2334577888887553 4788899999999999999999999994
Q ss_pred --EcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEEECCeEEEEeCCCcceeccCCCCCCCCC
Q 001160 942 --SGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVHESQISVYDSKLECSRSWSPKDALPAP 1019 (1134)
Q Consensus 942 --~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~ 1019 (1134)
++.|++|+|||+.+++....... ...+.....|...
T Consensus 326 ~s~~~~~tv~vwd~~t~~~~~~~~~------------------------------------------~~~~~~~~~~~~r 363 (426)
T d1hzua2 326 PDARISQSVAVFDLKNLDAKYQVLP------------------------------------------IAEWADLGEGAKR 363 (426)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEEC------------------------------------------HHHHHCCCSSCCC
T ss_pred CCcccCCEEEEEECCCCCcCeEEec------------------------------------------cchhcccCCCCcc
Confidence 55688999999998774321100 0111112334678
Q ss_pred eEEEEEccCCCEEEEE-----ecCCcEEEEeCCCcceeeecCCc
Q 001160 1020 ISSAIYSCDGLLVYAG-----FCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 1020 v~~v~~s~dg~~l~~~-----~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
|.+++|||||++++.+ +.+|.|+|||..|++....+...
T Consensus 364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 9999999999977543 36888999999999998887644
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=7.7e-21 Score=205.78 Aligned_cols=275 Identities=10% Similarity=0.082 Sum_probs=217.4
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG-VAFSKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~ 438 (1134)
++.++++.|++|.|||+.+++.+.+ +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4566788899999999999987653 11 234578999999999875 56678999999999
Q ss_pred CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe
Q 001160 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
+++.+. .+..|. .+..++|++++.. .++++..++.+.+|+..+++....+..+ ....++++++++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence 987665 555554 4689999999986 5677888999999999999988888644 5677888877653 3456667
Q ss_pred cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 519 IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 519 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.++.+.+|+..+......+..+ ..+..++++|+++.++++.. ....+.+|+....+....+..+. ....++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred cccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeeccc
Confidence 7899999999988777766544 45788999999999988764 35678889888888777776654 567789999
Q ss_pred CCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECCCchhhhhhh
Q 001160 599 TRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANSDGVRLLRML 671 (1134)
Q Consensus 599 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1134)
+++.+++++ .++.|++||+.+++.+..+..+. .+.+++|+|||++| ++++.++.|++||++++ +.+..+
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~ 282 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM 282 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred cccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence 999887654 44789999999999998887542 47899999999987 56677999999999998 444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.88 E-value=4.3e-20 Score=199.82 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=212.2
Q ss_pred ccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccC
Q 001160 328 NVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDA 407 (1134)
Q Consensus 328 ~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h 407 (1134)
.+..+|..+++.++++.....+..++|||||++++++++.++.|.+||+.+++.+.+ +..+
T Consensus 13 ~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~ 73 (301)
T d1l0qa2 13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAG 73 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECS
T ss_pred EEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eecc
Confidence 355667788899999998888999999999997778888899999999999887653 2233
Q ss_pred CcCeEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCC
Q 001160 408 AISVNRCVWGPDGLMLGV-AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVA 486 (1134)
Q Consensus 408 ~~~V~~i~~spdg~~las-~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~ 486 (1134)
. .+..++|++++..+++ +..++.+.+|+..+++... .+. +.....+++|+|++.. +++++..++.+.+|+..+
T Consensus 74 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVT 147 (301)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTT
T ss_pred c-cccccccccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeeccc
Confidence 3 4788999999997665 4567899999999876554 333 4556789999999995 567788899999999999
Q ss_pred CeeeEEecCCCCCeEEEEeeccCCccEEEEEec-CCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCC
Q 001160 487 GRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAI-DGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEG 565 (1134)
Q Consensus 487 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 565 (1134)
++.+..+..+ ..+..++++++. ..+++++. ++.+.+|+........... ....+..++++++++.++.+..+. .
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~-~ 222 (301)
T d1l0qa2 148 KAVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK-Y 222 (301)
T ss_dssp TEEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS-S
T ss_pred cceeeecccC-CCceEEEeeccc--cceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc-e
Confidence 9988888644 457788887755 56666655 4667777766554444443 345678899999999988766433 3
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeeEEEEeC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFL-AAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
++.|.+||..+++.+..+..+. .+..++|+|||++++ +++.++.|++||+++++.+.++..
T Consensus 223 ~~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 223 FNTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 6789999999999998887654 578999999999874 667899999999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=6.1e-20 Score=202.20 Aligned_cols=301 Identities=11% Similarity=0.073 Sum_probs=211.8
Q ss_pred cEEEEEecCCeEEEEEccCCCceeEecCC--CCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC-
Q 001160 512 QFIFSTAIDGKIKAWLYDYLGSRVDYDAP--GNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK- 588 (1134)
Q Consensus 512 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~- 588 (1134)
.++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999998888777653 456789999999999876542 477899999999999988876543
Q ss_pred ---cceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 589 ---RSLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 589 ---~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
..+..++|+|+++++++++ .+..+.+||..+++....+.... .+..++|+|||+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 1345689999999998775 46789999999999998887553 4688999999999998865
Q ss_pred CcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccc
Q 001160 654 NGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRL 733 (1134)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1134)
.+.+||..++ +....+..+..... ....
T Consensus 155 -~~~~~d~~~~-~~~~~~~~~~~~~~--------------------------------------------------~~~~ 182 (337)
T d1pbyb_ 155 -DLHVMDPEAG-TLVEDKPIQSWEAE--------------------------------------------------TYAQ 182 (337)
T ss_dssp -SEEEEETTTT-EEEEEECSTTTTTT--------------------------------------------------TBCC
T ss_pred -CcceeeeecC-cEEEEeecCCcccc--------------------------------------------------ceec
Confidence 4778998877 33333322111000 0000
Q ss_pred cccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcc
Q 001160 734 VDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKAT 813 (1134)
Q Consensus 734 ~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 813 (1134)
+++. .+|-... ..+...+.......+.........++.+.+|+.
T Consensus 183 ~~~~----------~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 226 (337)
T d1pbyb_ 183 PDVL----------AVWNQHE--------------SSGVMATPFYTARKDIDPADPTAYRTGLLTMDL------------ 226 (337)
T ss_dssp CBCC----------CCCCCCT--------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET------------
T ss_pred CCcc----------eeecccc--------------ccceeeeeeeeeeeccceeeecccCccEEEEEc------------
Confidence 1111 0110000 000111112222333344444455556666654
Q ss_pred cccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCC
Q 001160 814 ANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQD 893 (1134)
Q Consensus 814 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 893 (1134)
.++......... + ...+..+++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| |
T Consensus 227 ----------~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-d 290 (337)
T d1pbyb_ 227 ----------ETGEMAMREVRI--M-DVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-D 290 (337)
T ss_dssp ----------TTCCEEEEEEEE--C-SSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-T
T ss_pred ----------CCCcEEEEEecC--C-CcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-C
Confidence 333322222222 4 6778889999999998765 6899999999999998886 566789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcCCceEEEEecCc
Q 001160 894 NNIIAIGMEDSSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 894 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h 923 (1134)
|++|++++.|++|+|||+.+++.+..++..
T Consensus 291 G~~l~v~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 291 GSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence 999999999999999999999999887643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=9e-21 Score=209.86 Aligned_cols=328 Identities=7% Similarity=-0.033 Sum_probs=218.5
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCchhhhhhhc
Q 001160 594 VQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 594 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
++|+++++++++++.++.|.+||+.+++.+.++..+.. ..+.+++|+|||++++ ++..++.|.+||+.++ +....+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeec
Confidence 46889999999999999999999999999999875433 2468999999999875 4557899999999887 3222221
Q ss_pred CCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceecc
Q 001160 673 GRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRI 752 (1134)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~ 752 (1134)
.....
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (346)
T d1jmxb_ 80 LSSVP--------------------------------------------------------------------------- 84 (346)
T ss_dssp SCCST---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 10000
Q ss_pred CCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccc
Q 001160 753 PDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTND 832 (1134)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 832 (1134)
..+...+..++|+|||++++++..+.....|.... ....+.+|+..+++.....
T Consensus 85 ----------------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 85 ----------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp ----------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCS
T ss_pred ----------------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEE
Confidence 00123345788999999888776543222221110 0011223333333322111
Q ss_pred cCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEE-EEEeCCCcEEEEEc
Q 001160 833 INESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNII-AIGMEDSSVQIYNV 911 (1134)
Q Consensus 833 ~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-asg~~dg~i~iwd~ 911 (1134)
... .. ...+..+.++++++++++ ++.+.+|++.+++.+..+..+. ....+.++| ++..+ +.+..++.+.+++.
T Consensus 139 ~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 212 (346)
T d1jmxb_ 139 RTF-PM-PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYT 212 (346)
T ss_dssp EEE-EC-CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEE
T ss_pred Eee-ec-cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeee
Confidence 000 01 345566778888887765 4668999999999988887543 456677888 55544 44445555555542
Q ss_pred CCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 912 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 912 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
. ..+.+....++++..+..+.+|++.++......... +. ..+..+.+++++.+++.
T Consensus 213 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~ 268 (346)
T d1jmxb_ 213 I-----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIY 268 (346)
T ss_dssp E-----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEE
T ss_pred e-----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEE
Confidence 1 122334455666777788999999987754322221 11 34678899999999988
Q ss_pred EECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 992 VHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 992 ~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
..++.|.+||. +++.+..+.. ...+.+++|||||++|++++.|+.|+|||+.+++.+.++...
T Consensus 269 ~~~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 269 GVLNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ecCCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 88889999999 6665555432 346899999999999999999999999999999999988744
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=3.9e-20 Score=203.77 Aligned_cols=293 Identities=14% Similarity=0.125 Sum_probs=199.9
Q ss_pred CEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE-EEeCCCcEEEEECCCchhhhhhhcCCccccc
Q 001160 601 NRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGIKILANSDGVRLLRMLEGRAMDKN 679 (1134)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1134)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~--- 77 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCC---
Confidence 478999999999999999999999998765555678999999999875 5667899999999887 33322221110
Q ss_pred CCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCcc
Q 001160 680 RCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPS 759 (1134)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~ 759 (1134)
T Consensus 78 -------------------------------------------------------------------------------- 77 (337)
T d1pbyb_ 78 -------------------------------------------------------------------------------- 77 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCC
Q 001160 760 QIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPT 839 (1134)
Q Consensus 760 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~ 839 (1134)
..+...+..++|+|++++++++..+.....|..
T Consensus 78 ---------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~-------------------------------------- 110 (337)
T d1pbyb_ 78 ---------EERVKSLFGAALSPDGKTLAIYESPVRLELTHF-------------------------------------- 110 (337)
T ss_dssp ---------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCE--------------------------------------
T ss_pred ---------cccccceeeEEEcCCCcEEEEeecCCcceeeec--------------------------------------
Confidence 001233456889999998888776644433311
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTK 919 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~ 919 (1134)
...++.+.+||..+++....+.. ...+..++|+| +++++++++. .+.+||..+++....
T Consensus 111 -----------------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 111 -----------------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVED 169 (337)
T ss_dssp -----------------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred -----------------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEE
Confidence 11245666777777776666663 34566777777 6766666643 356677777766665
Q ss_pred ecCcccceEEEEEec------------------------CCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCc
Q 001160 920 LKGHQNRITGLAFSP------------------------TLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLV 975 (1134)
Q Consensus 920 l~~h~~~i~~l~~s~------------------------d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~ 975 (1134)
+..+... ....++| +.........++.+.+|+..++......... +. .
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~ 241 (337)
T d1pbyb_ 170 KPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----MD---V 241 (337)
T ss_dssp ECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----CS---S
T ss_pred eecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----CC---c
Confidence 5433211 1111111 2222223344556889999887743322221 11 3
Q ss_pred CceEEEECCCCcEEEEEECCeEEEEeC-CCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeee
Q 001160 976 GETKVQFHNDQTHLLVVHESQISVYDS-KLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCR 1054 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~~d~~v~vwd~-~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~ 1054 (1134)
.+..++++|++.+++.. ++.|++||+ +++.+..+.. ...+.+++|||||++|++++.|+.|+|||..+++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~ 316 (337)
T d1pbyb_ 242 FYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred ceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 56788999999988765 589999999 5665555432 45789999999999999999999999999999999998
Q ss_pred cCCc
Q 001160 1055 IGPS 1058 (1134)
Q Consensus 1055 ~~~~ 1058 (1134)
+...
T Consensus 317 i~~~ 320 (337)
T d1pbyb_ 317 VDLP 320 (337)
T ss_dssp EECG
T ss_pred EECC
Confidence 8654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=8.4e-20 Score=201.88 Aligned_cols=309 Identities=9% Similarity=-0.026 Sum_probs=210.2
Q ss_pred CCccEEEEEecCCeEEEEEccCCCceeEecC-CCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc
Q 001160 509 ESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA-PGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR 587 (1134)
Q Consensus 509 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 587 (1134)
.+++++++++.|++|.+||+.+.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+....
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeecccc
Confidence 3459999999999999999999888777764 4556789999999999876653 46889999999999988776543
Q ss_pred Cc-----ceEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEE
Q 001160 588 KR-----SLGVVQFDTTRNRFLAAG------------DEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVT 650 (1134)
Q Consensus 588 ~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 650 (1134)
.. .+..++|+|||+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.++++
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA- 161 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-
Confidence 21 345689999999988765 477899999988765544332222234567778888876654
Q ss_pred eCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCc
Q 001160 651 TSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDG 730 (1134)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1134)
++.+.+|+..++ +....+..+... ...
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~--------------------------------------------------~~~ 188 (346)
T d1jmxb_ 162 --GPDIYKMDVKTG-KYTVALPLRNWN--------------------------------------------------RKG 188 (346)
T ss_dssp --SSSEEEECTTTC-CEEEEECSTTCC--------------------------------------------------CTT
T ss_pred --CCcceEEEccCC-CEEEEEecCCCc--------------------------------------------------cce
Confidence 346889998877 333333222110 001
Q ss_pred ccccccccccccc--cCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeeccCeeEEeecccccCCC
Q 001160 731 SRLVDVKPRVAED--VDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNP 808 (1134)
Q Consensus 731 ~~~~~~~~~~~~~--~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~ 808 (1134)
.+.+++..+.... ++.+.+++. ...+.+....+.+...++.+.+|++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~------ 238 (346)
T d1jmxb_ 189 YSAPDVLYFWPHQSPRHEFSMLYT------------------------IARFKDDKQDPATADLLYGYLSVDLK------ 238 (346)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEE------------------------EEEC-------CCCEEEEEEEEEETT------
T ss_pred EEeccccEEEEEecCCCceEeeee------------------------eeeeccCceeEeeccCCceEEEEECC------
Confidence 1122222221111 122222211 11222334445555556667777653
Q ss_pred CCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEE
Q 001160 809 SGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLA 888 (1134)
Q Consensus 809 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 888 (1134)
++......... | ...+..+.+++++.+++.+.++.|.+||..+++.+..+. +...+.+++
T Consensus 239 ----------------~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va 298 (346)
T d1jmxb_ 239 ----------------TGKTHTQEFAD--L-TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVA 298 (346)
T ss_dssp ----------------TCCEEEEEEEE--C-SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEE
T ss_pred ----------------CCceEEEEeec--c-cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEE
Confidence 33322222222 4 777889999999999998888899999999999988886 455799999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCccc
Q 001160 889 FHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQN 925 (1134)
Q Consensus 889 ~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 925 (1134)
||| ||++|++++.|+.|++||+.+++.+.+++.+.+
T Consensus 299 ~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 299 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 999 899999999999999999999999999875544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=7.9e-18 Score=188.19 Aligned_cols=333 Identities=11% Similarity=-0.005 Sum_probs=224.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEE-----eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEE------
Q 001160 405 NDAAISVNRCVWGPDGLMLGVA-----FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTC------ 473 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg------ 473 (1134)
..+.+++.+++++|||+.+++. +..+.|.+||..+++.+. .+..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCC--EEEEEeecCCc
Confidence 4588899999999999998875 235679999999988765 45555443 799999999 55554
Q ss_pred ----cCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEE
Q 001160 474 ----GDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAY 549 (1134)
Q Consensus 474 ----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1134)
..++.|.+||+.+++.+..+..+......+...+ ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNAN 132 (373)
T ss_pred ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEEE
Confidence 3467899999999998888776655444433221 13467
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
+++++.++.... +.+..+.+|+..+.+...... ...++.++|+++.+ ++.+.|+.+.+|+...++.......
T Consensus 133 s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 788887766554 235678899988877665544 34568899999765 5678999999999998887766543
Q ss_pred CC----CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCccccc
Q 001160 629 DG----GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSA 704 (1134)
Q Consensus 629 ~~----~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1134)
.. .......+.+++++.+ +..+.++.+.+|+..++. .....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~~~~--------------------------------- 250 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAG-ATNKA--------------------------------- 250 (373)
T ss_pred eccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCe-EEEEE---------------------------------
Confidence 21 1112334556666644 455678899999876651 10000
Q ss_pred ccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCC
Q 001160 705 AIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSG 784 (1134)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 784 (1134)
.|+. +........+.|.+
T Consensus 251 --------------------------------------------~~~~------------------~~~~~~~~~~~~~~ 268 (373)
T d2madh_ 251 --------------------------------------------PIDA------------------LSGGRKADTWRPGG 268 (373)
T ss_pred --------------------------------------------eecc------------------ccCcEEeeeeccCc
Confidence 0000 01111222233333
Q ss_pred cceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-CCeE
Q 001160 785 LSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-GGKV 863 (1134)
Q Consensus 785 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-dg~i 863 (1134)
...++.+.++.. ...+.+++..+++.. ++.+
T Consensus 269 ~~~~~~~~d~~~------------------------------------------------~~~~~~~~~~~~~~~~~~~v 300 (373)
T d2madh_ 269 WQQVAYLKSSDG------------------------------------------------IYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ceeeEEecCCCe------------------------------------------------EEEecCCCceEEeecCCCeE
Confidence 222222222111 112223444455555 7899
Q ss_pred EEEECCCCeEEEEecCCCCceEEEEEcCCCCc--EEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecC
Q 001160 864 SLFNMMTFKVMTMFMSPPPAATFLAFHPQDNN--IIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPT 935 (1134)
Q Consensus 864 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d 935 (1134)
.+||..+++.+..+. +...+.+++|+| ||+ ++++++.|+.|+|||+.+++.+.++.++....+.|++.++
T Consensus 301 ~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 301 TSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred EEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999988876 567789999999 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.80 E-value=6.3e-17 Score=180.68 Aligned_cols=201 Identities=8% Similarity=-0.013 Sum_probs=140.9
Q ss_pred CCCCeeEEEEecCCCeEEEEE----eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCC
Q 001160 345 QGSNVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1134)
Q Consensus 345 h~~~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg 420 (1134)
+..++.+++++|||++++++. +..+.|.+||..+++.+.+ +..+. ...++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCCC
Confidence 567899999999999776653 2346799999999987753 22333 3379999999
Q ss_pred CEEEEEe----------CCCeEEEEEcCCCCccceeeEEecccCC-------eeEEEEecCCCcEEEEEEcCCCcEEEEE
Q 001160 421 LMLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHVGG-------VNDIAFAHPNKQLCIVTCGDDKMIKVWD 483 (1134)
Q Consensus 421 ~~las~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~-------v~~l~~s~d~~~~~l~sg~~d~~i~iwd 483 (1134)
++|++++ .++.|.+||..+++.+. .+..+... ...+.|+++++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 35789999999987655 33333332 2568999999975566667788999999
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCC------CCcEEEEEECCCCCEEE
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAP------GNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~ 557 (1134)
..+++..... ....++.+++++. ..+++.+.|+.+.+|+............. ......+.+++++.+++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 8887765444 3456777877654 46788999999999999877665543221 22334556666665555
Q ss_pred EEeeCCCCCCcEEEEeCCCCee
Q 001160 558 SCGTSKEGESHLVEWNESEGAI 579 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~ 579 (1134)
... ++.+.+|+..++..
T Consensus 230 ~~~-----~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 230 PVY-----SGKILQADISAAGA 246 (373)
T ss_pred ecC-----CceEEEEEcCCCeE
Confidence 432 56678888766543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.3e-17 Score=178.77 Aligned_cols=285 Identities=12% Similarity=0.101 Sum_probs=188.1
Q ss_pred eEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe--CCeEE
Q 001160 787 LLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS--GGKVS 864 (1134)
Q Consensus 787 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s--dg~i~ 864 (1134)
+++++.++.|++|+++... +..+...+ .| ...+..++|||||++|+++. |+.|+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~--------------------~l~~~~~~---~~-~~~v~~la~spDG~~L~v~~~~d~~i~ 62 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEG--------------------ALTLTQVV---DV-PGQVQPMVVSPDKRYLYVGVRPEFRVL 62 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS--------------------CEEEEEEE---EC-SSCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred EEECCCCCcEEEEEEcCCC--------------------CeEEEEEE---cC-CCCEeEEEEeCCCCEEEEEECCCCeEE
Confidence 4667788999999975311 10000001 15 77899999999999997665 79999
Q ss_pred EEECCCCeEEEEe---cCCCCceEEEEEcCCCCcEEEEEeC-CCcEEEEEcCCceEEE--EecCcccceEEEEEecCCCE
Q 001160 865 LFNMMTFKVMTMF---MSPPPAATFLAFHPQDNNIIAIGME-DSSVQIYNVRVDEVKT--KLKGHQNRITGLAFSPTLNA 938 (1134)
Q Consensus 865 vwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~lasg~~-dg~i~iwd~~~~~~~~--~l~~h~~~i~~l~~s~d~~~ 938 (1134)
+|++........+ ..+...+..++|+| ||++|++++. ++.|.+|+........ ....+...+.++.++||+++
T Consensus 63 ~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~ 141 (333)
T d1ri6a_ 63 AYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT 141 (333)
T ss_dssp EEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred EEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeeccee
Confidence 9999765322222 22445678899999 8998888875 6789999987765433 34456777889999999998
Q ss_pred EEEEc-CCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeCC--Cccee-----
Q 001160 939 LVSSG-ADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSK--LECSR----- 1008 (1134)
Q Consensus 939 l~s~~-~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~--~~~~~----- 1008 (1134)
+++++ .+..|.+|+................... ...+..++|++++.+++.. ..+...+|+.. .....
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 219 (333)
T d1ri6a_ 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 219 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred eeccccccceeeEEEeccCCcceeeeceeeeeec--CCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence 88776 4456999998775533222211111111 1346889999999998875 34677788762 21111
Q ss_pred -ccCCCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEE
Q 001160 1009 -SWSPKDALPAPISSAIYSCDGLLVYAG-FCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIA 1086 (1134)
Q Consensus 1009 -~~~~~~~h~~~v~~v~~s~dg~~l~~~-~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 1086 (1134)
..............+++++|+++++.+ ..++.+.+|++........+.... .....+.+++|+| ||++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~a~sp-DGk~l~ 291 (333)
T d1ri6a_ 220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-------PTETQPRGFNVDH-SGKYLI 291 (333)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-------ECSSSCCCEEECT-TSSEEE
T ss_pred eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-------CCCCCeeEEEEeC-CCCEEE
Confidence 111122234567789999999976654 557889999988765444333211 1224567899999 788776
Q ss_pred EEe-CCCcEEEEecCCCcccc
Q 001160 1087 LGM-SDGAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1087 s~~-~Dg~v~vW~~~~~~~~~ 1106 (1134)
+++ .+++|.+|++....+.+
T Consensus 292 va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 292 AAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EECTTTCEEEEEEEETTTTEE
T ss_pred EEECCCCeEEEEEEECCCCcE
Confidence 665 56899999775443333
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=4e-17 Score=180.87 Aligned_cols=203 Identities=13% Similarity=0.006 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEE--------EcCCC
Q 001160 411 VNRCVWGPDGLMLGVAF-----SKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVT--------CGDDK 477 (1134)
Q Consensus 411 V~~i~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s--------g~~d~ 477 (1134)
+.-.+.+|||+.+++.. .++.|.+||..+++.+. .+..+. +..++|+|||+.++++. ++.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 33446789999998763 45679999999987665 444443 44799999999543332 34578
Q ss_pred cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 478 MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 478 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
.|++||+.+++.+..+..+......+. .....++|+|++++++
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPRFLVG-------------------------------------TYPWMTSLTPDGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBS-------------------------------------CCGGGEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCcceeecC-------------------------------------CCCceEEEecCCCeeE
Confidence 899999998888776654432221110 1122457889999888
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCc------ceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeeEEEEeCCC
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKR------SLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMNMLTTVDADG 630 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 630 (1134)
.+.. ..+..+.+|+..+++.+..+...... ....+.+++++..++... .++.+.+++..... ..
T Consensus 122 v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-------~~ 192 (355)
T d2bbkh_ 122 FYQF--SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-------PE 192 (355)
T ss_dssp EEEC--SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-------CT
T ss_pred EecC--CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-------ce
Confidence 7653 23567899999999888877654321 112244555554444322 33333333333221 11
Q ss_pred CCCCcceEEEccCCCEEEEEeCCCcEEEEECCCc
Q 001160 631 GLPASPRLRFNKEGSLLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 631 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~ 664 (1134)
....+....+.+++..++.++.++.+++|+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 193 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence 2234566788888889999999999999998766
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.1e-16 Score=171.71 Aligned_cols=281 Identities=13% Similarity=0.145 Sum_probs=189.5
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYN 438 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~ 438 (1134)
.++++++.|++|+||++.+...+... ....|.+.|.+++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~-----------------~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLT-----------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEE-----------------EEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 35678889999999999765433210 0235788999999999999996655 58999999998
Q ss_pred CCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-CCCcEEEEECCCCeeeEE--ecCCCCCeEEEEeeccCCccEEE
Q 001160 439 PTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG-DDKMIKVWDVVAGRKQYT--FEGHEAPVYSVCPHHKESIQFIF 515 (1134)
Q Consensus 439 ~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~-~d~~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~ 515 (1134)
.............+...+..++|+|||+ +|++++ .++.|.+|+......... ...+...+.++.+++++ .+++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc--eeee
Confidence 7654432222233455678899999999 555554 577899999877655433 34567778888888765 6666
Q ss_pred EEe-cCCeEEEEEccCCCcee------EecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe----eEEEec
Q 001160 516 STA-IDGKIKAWLYDYLGSRV------DYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA----IKRTYS 584 (1134)
Q Consensus 516 s~~-~d~~i~~wd~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~ 584 (1134)
.++ .+..|.+|+........ ...........++|++++..++.... ..+...+|+..... ......
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 665 55679999987655433 12234456789999999999887653 34456677654321 111221
Q ss_pred Cc-----cCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeC-CCCCCCcceEEEccCCCEEEEEeC-CCcE
Q 001160 585 GF-----RKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDA-DGGLPASPRLRFNKEGSLLAVTTS-DNGI 656 (1134)
Q Consensus 585 ~~-----~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~-dg~i 656 (1134)
.. .......+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 11 11245668899999987775 4678999999876543322221 111234678999999998877654 6899
Q ss_pred EEEEC--CCc
Q 001160 657 KILAN--SDG 664 (1134)
Q Consensus 657 ~iw~~--~~~ 664 (1134)
++|++ .+|
T Consensus 301 ~v~~id~~tG 310 (333)
T d1ri6a_ 301 SVYEIVGEQG 310 (333)
T ss_dssp EEEEEETTTT
T ss_pred EEEEEECCCC
Confidence 99955 444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=8.7e-17 Score=178.14 Aligned_cols=292 Identities=13% Similarity=0.081 Sum_probs=195.0
Q ss_pred CeeEEEEecCCCeEEEEE----eCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEE
Q 001160 348 NVMSMDFHPQQQTILLVG----TNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLML 423 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~l 423 (1134)
++.-.+.+|||++++++. ..+++|.+||..+++.+.+ +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 455557799999776554 2355799999999987653 2222 34479999999988
Q ss_pred EEEe----------CCCeEEEEEcCCCCccceeeEEecc----cCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCee
Q 001160 424 GVAF----------SKHIVHLYTYNPTGELRQHLEIDAH----VGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRK 489 (1134)
Q Consensus 424 as~~----------~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~ 489 (1134)
++.+ .++.|++||..+++..........+ ......++|+++++.++++..+.+..+.+||..+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8753 4789999999998766532211111 2234678999999965555556788999999999998
Q ss_pred eEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEec------CCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 490 QYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYD------APGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 490 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
+..+..+..... + +... ...++.+.|+...++............ .+...+....+.+++..++.++.
T Consensus 142 ~~~~~~~~~~~~---~-~~~~-~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHI---F-PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEE---E-EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceE---e-ecCC-cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 888765432211 1 1111 344555566665555544433322221 12223455677788888887753
Q ss_pred CCCCcEEEEeCCCCeeEE--EecCccC---------cceEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCee
Q 001160 564 EGESHLVEWNESEGAIKR--TYSGFRK---------RSLGVVQFDTTRNRFLAAGDE----------FQIKFWDMDNMNM 622 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~--~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 622 (1134)
++.+++|+...+.... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 7789999998775422 2221110 123358899999988876533 4799999999999
Q ss_pred EEEEeCCCCCCCcceEEEccCCC--EEEEEeCCCcEEEEECCCchhhhhhhcC
Q 001160 623 LTTVDADGGLPASPRLRFNKEGS--LLAVTTSDNGIKILANSDGVRLLRMLEG 673 (1134)
Q Consensus 623 ~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1134)
+..+... ..+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.+
T Consensus 293 ~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~ 341 (355)
T d2bbkh_ 293 LAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ 341 (355)
T ss_dssp EEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC
T ss_pred EEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeC
Confidence 8888643 2478999999997 4556677999999999999 55555543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.58 E-value=1.5e-13 Score=158.06 Aligned_cols=219 Identities=11% Similarity=0.076 Sum_probs=139.4
Q ss_pred eEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC-
Q 001160 350 MSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS- 428 (1134)
Q Consensus 350 ~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~- 428 (1134)
..+.|.+|++ ++. ..|+.|.+||+.+++.... +....+..|...|.++.|||||++||.++.
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~ 82 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred cCCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECC
Confidence 3578999997 554 4588999999999875421 111235678889999999999999998853
Q ss_pred --------CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCC----
Q 001160 429 --------KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGH---- 496 (1134)
Q Consensus 429 --------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h---- 496 (1134)
++.+.+||+.+++.. .+..|...+..+.|||||+ .+|.. .++.+++|+..+++..+....+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~ 155 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI 155 (470)
T ss_dssp EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT
T ss_pred cceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCc
Confidence 567899999987533 4567888999999999999 56664 4778999999988766543322
Q ss_pred --------------CCCeEEEEeeccCCccEEEEEecCCe-EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEee
Q 001160 497 --------------EAPVYSVCPHHKESIQFIFSTAIDGK-IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGT 561 (1134)
Q Consensus 497 --------------~~~v~~i~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 561 (1134)
.+....+.|+|+ |++|+....|.+ +..|++...... .........+.+...+..
T Consensus 156 ~~~g~~d~~~~~~~~~~~~~~~wSPD--Gk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------ 224 (470)
T d2bgra1 156 IYNGITDWVYEEEVFSAYSALWWSPN--GTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------ 224 (470)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEECTT--SSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC------
T ss_pred ccccccceeeeeeecCCccccEECCC--CCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc------
Confidence 223455678775 488888876644 555543211100 001112222222222211
Q ss_pred CCCCCCcEEEEeCCCCeeEEEecC----------ccCcceEEEEEeCCCCEEEE
Q 001160 562 SKEGESHLVEWNESEGAIKRTYSG----------FRKRSLGVVQFDTTRNRFLA 605 (1134)
Q Consensus 562 ~~~~~~~i~~wd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~ 605 (1134)
..+..+.+|++..+........ ..+..+..+.|.+++..++.
T Consensus 225 --~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 --NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp --CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred --CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 1233478888876654322211 11224567888888876554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=8.8e-14 Score=154.16 Aligned_cols=287 Identities=9% Similarity=-0.003 Sum_probs=189.7
Q ss_pred CCCeeEEEEecCCCeEEEE--EeCCC--cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCC
Q 001160 346 GSNVMSMDFHPQQQTILLV--GTNVG--DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGL 421 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llas--g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~ 421 (1134)
.+....++.+++++...++ ...+| .|.+||..+++.+.. +..+.. ..++|+|||+
T Consensus 19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~--~~~a~spDg~ 77 (368)
T d1mdah_ 19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFL--SLAVAGHSGS 77 (368)
T ss_dssp CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTT--CEEEECTTSS
T ss_pred CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCC--CcceECCCCC
Confidence 3456666778888753333 34444 466779888876653 223333 3589999999
Q ss_pred EEEEEe----------CCCeEEEEEcCCCCccceeeEEeccc-------CCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 422 MLGVAF----------SKHIVHLYTYNPTGELRQHLEIDAHV-------GGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 422 ~las~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.|++.+ .|+.|.+||..+++.+. .+..+. .....++|+|||+. ++++...++.+.+||+
T Consensus 78 ~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~---~i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLSV 153 (368)
T ss_dssp CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE---EEEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEEE
T ss_pred EEEEEcccCccccccccCCeEEEEECCCCcEee---eecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEEC
Confidence 999864 36789999999987665 332222 22346999999995 3344456899999999
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe------cCCCCcEEEEEECCCCCEEEE
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY------DAPGNWCTMMAYSADGTRLFS 558 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~ 558 (1134)
.+++.+..+..+..... .+.+. ..++..+.||.+.+|++......... ..+...+....+.+++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp TTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred CCCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence 99999988876554321 22222 57777888999999988766554332 222334556778888776665
Q ss_pred EeeCCCCCCcEEEEeCCCCeeEEEe--cCccC---------cceEEEEEeCCCCEEEEEeCC---------CeEEEEECC
Q 001160 559 CGTSKEGESHLVEWNESEGAIKRTY--SGFRK---------RSLGVVQFDTTRNRFLAAGDE---------FQIKFWDMD 618 (1134)
Q Consensus 559 ~~~~~~~~~~i~~wd~~~~~~~~~~--~~~~~---------~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 618 (1134)
. .+.+++++...+...... ..... .....+++++++..++....+ ..|.+||..
T Consensus 229 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~ 302 (368)
T d1mdah_ 229 V------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS 302 (368)
T ss_dssp B------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS
T ss_pred c------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC
Confidence 4 334666666554433221 11110 012347889999887765322 359999999
Q ss_pred CCeeEEEEeCCCCCCCcceEEEccCCC-E-EEEEeCCCcEEEEECCCchhhhhhhc
Q 001160 619 NMNMLTTVDADGGLPASPRLRFNKEGS-L-LAVTTSDNGIKILANSDGVRLLRMLE 672 (1134)
Q Consensus 619 ~~~~~~~~~~~~~~~~v~~~~~s~d~~-~-l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1134)
+++.+..+... ..+..++|+|||+ + ++++..++.|++||..++ +.+..+.
T Consensus 303 t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~ 354 (368)
T d1mdah_ 303 VGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp SCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred CCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence 99988877643 2578899999997 3 456667899999999999 4444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=8.4e-14 Score=154.35 Aligned_cols=286 Identities=9% Similarity=-0.052 Sum_probs=180.0
Q ss_pred ceEEEEEecCCcceE---EeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEecc
Q 001160 774 KVVRLIYTNSGLSLL---ALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSK 850 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~---~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~ 850 (1134)
....++..++++... ....++...+| ++|..+++.+.... . + . ...++|+|
T Consensus 21 ~~~~~a~~~~~~~~~v~~~~~~~g~~~~~--------------------~~d~~~~~~~~~~~-~--~-~--~~~~a~sp 74 (368)
T d1mdah_ 21 SSCDHGPGAISRRSHITLPAYFAGTTENW--------------------VSCAGCGVTLGHSL-G--A-F--LSLAVAGH 74 (368)
T ss_dssp CCBCCCCCCCTTEEEEEECTTTCSSEEEE--------------------EEETTTTEEEEEEE-E--C-T--TCEEEECT
T ss_pred CccccccCCCCcceeEEeeccCCCcceEE--------------------EEeCCCCcEEEEEe-C--C-C--CCcceECC
Confidence 334445567776532 23345665555 23556666544322 1 1 2 23589999
Q ss_pred CCCEEEEEe-----------CCeEEEEECCCCeEEEEecCCCC-------ceEEEEEcCCCCcEEEEEe-CCCcEEEEEc
Q 001160 851 NDSYVMSAS-----------GGKVSLFNMMTFKVMTMFMSPPP-------AATFLAFHPQDNNIIAIGM-EDSSVQIYNV 911 (1134)
Q Consensus 851 dg~~la~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~~lasg~-~dg~i~iwd~ 911 (1134)
||+.|++.+ ++.|.+||..+++.+..+..+.. ....++||| ||++|+++. .++.+.+||+
T Consensus 75 Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEE
T ss_pred CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEEC
Confidence 999998764 45699999999999888764432 234689999 888887775 5799999999
Q ss_pred CCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE
Q 001160 912 RVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV 991 (1134)
Q Consensus 912 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~ 991 (1134)
.+++.+..+..+..... +......++..+.|+++.+|++............. ........+..+.+.+++..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~ 228 (368)
T d1mdah_ 154 PGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ--CTGAQNCSSQAAQANYPGMLVWA 228 (368)
T ss_dssp TTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC--SCTTSCBCSCCEEETTTTEEEEC
T ss_pred CCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc--cccccccceeecccccCcEEEEe
Confidence 99999888876554321 11223456666778888888776554322111111 11111134456777888765544
Q ss_pred EECCeEEEEeCCCcceeccCCCCCC----------CCCeEEEEEccCCCEEEEEecCC---------cEEEEeCCCccee
Q 001160 992 VHESQISVYDSKLECSRSWSPKDAL----------PAPISSAIYSCDGLLVYAGFCDG---------AIGVFDAETLRFR 1052 (1134)
Q Consensus 992 ~~d~~v~vwd~~~~~~~~~~~~~~h----------~~~v~~v~~s~dg~~l~~~~~dg---------~I~vwd~~~~~~~ 1052 (1134)
.++.+.+++........+.....+ ......+++++++..++....++ .|.+||..+++.+
T Consensus 229 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~ 307 (368)
T d1mdah_ 229 -VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307 (368)
T ss_dssp -BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred -cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence 345566666633332222211110 12234588999998876654332 5999999999988
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCC--EEEEEeCCCcEEEEecCCCcc
Q 001160 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPN--QIALGMSDGAVHVVEPSDAEL 1104 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~l~s~~~Dg~v~vW~~~~~~~ 1104 (1134)
.++... ..+.+++|+| ||+ +++++..|++|++||..+++.
T Consensus 308 ~~~~~~-----------~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 308 GPISNG-----------HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp ECCEEE-----------EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEecCC-----------CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 777522 3455789999 665 457778899999999999884
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=1.3e-13 Score=149.87 Aligned_cols=339 Identities=8% Similarity=-0.041 Sum_probs=206.7
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEE
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMM 547 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1134)
..++||+.+|.|.+||+.+++.++++.- |+|++. . ..|..+.+.+++. ..........|.......
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t 77 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISMT 77 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEE
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCccee
Confidence 3688999999999999999999988752 444331 1 1122222211111 111111122344455666
Q ss_pred EECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCC--EEEEEeCCC---------------
Q 001160 548 AYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRN--RFLAAGDEF--------------- 610 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg--------------- 610 (1134)
.++|||+++++... .+.+|.++|+.+++....+..........++|+|+|+ +++..+++.
T Consensus 78 ~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 78 DGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp TTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred cccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 67899999988753 4778999999999988877654444788999999997 444444432
Q ss_pred --eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCc-EEEEECCCchhhhhhhcCCcccccCCCCCCCC
Q 001160 611 --QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNG-IKILANSDGVRLLRMLEGRAMDKNRCPSEPIS 687 (1134)
Q Consensus 611 --~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1134)
.+..+|..+.+....+.... ....++|+|||+++++.+.+.. +..++..+. .....+....
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~d~i~v~n------------ 218 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDRDWVVVFN------------ 218 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSBCEEEEEE------------
T ss_pred cceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-ceEEEEEeCC------------
Confidence 23568888888887776543 3578999999999998876532 211111111 0000000000
Q ss_pred CCCccccccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecC
Q 001160 688 SKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLP 767 (1134)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~ 767 (1134)
......+.++++++..+.++.+.++..... .....+..
T Consensus 219 --------------------------------------~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~---~v~~~IPv- 256 (441)
T d1qnia2 219 --------------------------------------VERIAAAVKAGNFKTIGDSKVPVVDGRGES---EFTRYIPV- 256 (441)
T ss_dssp --------------------------------------HHHHHHHHHTTCCBCCTTCCCCEEECSSSC---SSEEEECC-
T ss_pred --------------------------------------ccceEEEecCCCEEEeCCCCcEEEEcccCC---ceEEEEeC-
Confidence 001123456777777777777777765542 22233322
Q ss_pred CcccccceEEEEEecCCcceEEe-eccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEE
Q 001160 768 DSIAASKVVRLIYTNSGLSLLAL-ASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACI 846 (1134)
Q Consensus 768 ~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~ 846 (1134)
......+.++|||++++++ ..++++.+||+..-....+++.... ..+..... . .-.....
T Consensus 257 ----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~-----------~~~~~~~~---~-glgplh~ 317 (441)
T d1qnia2 257 ----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR-----------DTIVAEPE---L-GLGPLHT 317 (441)
T ss_dssp ----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-----------GGEEECCB---C-CSCEEEE
T ss_pred ----CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-----------eEEEeecc---c-ccCcccc
Confidence 2235679999999988654 5589999999875332222221100 00000000 1 2234557
Q ss_pred EeccCCCEEEEEe-CCeEEEEECCC----------CeEEEEe-----cCCCCceEEEEEcCCCCcEEEEEe
Q 001160 847 ALSKNDSYVMSAS-GGKVSLFNMMT----------FKVMTMF-----MSPPPAATFLAFHPQDNNIIAIGM 901 (1134)
Q Consensus 847 ~~s~dg~~la~~s-dg~i~vwd~~~----------~~~~~~~-----~~~~~~i~~l~~s~~~~~~lasg~ 901 (1134)
+|+++|..+.+.. |.+|..|++.. ...+..+ .+|...+.+.+|+| ||++|++++
T Consensus 318 ~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~ 387 (441)
T d1qnia2 318 TFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLS 387 (441)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEE
T ss_pred eecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecC
Confidence 8999998887777 99999999752 2244444 45666677778999 999999993
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.51 E-value=2.6e-15 Score=163.52 Aligned_cols=260 Identities=8% Similarity=-0.023 Sum_probs=166.8
Q ss_pred eEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 001160 360 TILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSKHIVHLYTYNP 439 (1134)
Q Consensus 360 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~ 439 (1134)
+.+++|+.+|+|.||++.+++.+.+ + + .|+|++... .|..+.+.+++. +
T Consensus 12 y~f~Sgg~sG~V~V~dlpS~r~l~~-------------------I-----p----Vfspd~~~g-~g~~~es~~vl~--~ 60 (441)
T d1qnia2 12 YGFWSGGHQGEVRVLGVPSMRELMR-------------------I-----P----VFNVDSATG-WGITNESKEILG--G 60 (441)
T ss_dssp EEEEECBTTCCEEEEEETTTEEEEE-------------------E-----C----SSSBCTTTC-TTTSHHHHHHHC--S
T ss_pred EEEEeCCCCCcEEEEeCCCCcEEEE-------------------E-----E----eEcCCCCEE-EEECCccceEEe--c
Confidence 5677888999999999999887653 1 1 267766531 222222112211 1
Q ss_pred CCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-CCCCCeEEEEeeccCCccEEEEEe
Q 001160 440 TGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-GHEAPVYSVCPHHKESIQFIFSTA 518 (1134)
Q Consensus 440 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~ 518 (1134)
+.... ....|.-......++|||++ ++++...++.|.++|+.+++....+. .+...+..++|++++.-.+++..+
T Consensus 61 ~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~ 136 (441)
T d1qnia2 61 DQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNA 136 (441)
T ss_dssp SSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEE
T ss_pred ccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEecc
Confidence 11110 12235445666677899995 45667788999999999999887664 356789999998877544666555
Q ss_pred cCC-----------------eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEE
Q 001160 519 IDG-----------------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKR 581 (1134)
Q Consensus 519 ~d~-----------------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 581 (1134)
.+. .+..+|..+.+....+... .....+.|+|+|+++++.+.+. ..+..++..+.....
T Consensus 137 ~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~ns---e~~~~id~~t~~~~d 212 (441)
T d1qnia2 137 EFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNS---ERAVDLAGTMRNDRD 212 (441)
T ss_dssp CSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCT---TCCSSHHHHTCSSBC
T ss_pred CCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCC---CceEEEeccCcceEE
Confidence 442 2355777776665555433 3567899999999999876522 223333443333322
Q ss_pred EecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEE-EeCCCcEEEEE
Q 001160 582 TYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAV-TTSDNGIKILA 660 (1134)
Q Consensus 582 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~dg~i~iw~ 660 (1134)
.+.... .-..+.+.|+|+++..+ .++.+.+++....+.+..+.... ....+.++|||+++++ +..+++|.+||
T Consensus 213 ~i~v~n--~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d 286 (441)
T d1qnia2 213 WVVVFN--VERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIA 286 (441)
T ss_dssp EEEEEE--HHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEE
T ss_pred EEEeCC--ccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEE
Confidence 222111 11224567889876654 46788888887777787776543 3478999999998765 56699999999
Q ss_pred CCCc
Q 001160 661 NSDG 664 (1134)
Q Consensus 661 ~~~~ 664 (1134)
+.+.
T Consensus 287 ~~k~ 290 (441)
T d1qnia2 287 IDKL 290 (441)
T ss_dssp GGGH
T ss_pred eehh
Confidence 9754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.49 E-value=2.2e-12 Score=148.03 Aligned_cols=141 Identities=10% Similarity=0.043 Sum_probs=105.5
Q ss_pred eEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEec-----CCCCCeEEEEeeccCCccEEEEEec---------CCe
Q 001160 457 NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFE-----GHEAPVYSVCPHHKESIQFIFSTAI---------DGK 522 (1134)
Q Consensus 457 ~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~~~---------d~~ 522 (1134)
..+.|.++++ ++. ..|+.+.+||+.+++....+. .|...|.++.|+|++ ++|+.++. ++.
T Consensus 20 ~~~~W~~d~~--~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg--~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHE--YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG--QFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSE--EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS--SEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCE--EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC--CEEEEEECCcceeeeccCce
Confidence 3578999997 555 347889999999998766544 455789999998855 88888753 567
Q ss_pred EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccC--------------
Q 001160 523 IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRK-------------- 588 (1134)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-------------- 588 (1134)
+.+||+.+++ ...+..+...+..+.|||||+.++... +..+++|+..+++..+.......
T Consensus 94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-----~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp EEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEEECCCCc-ccccccCCccccccccccCcceeeEee-----cccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence 8999999765 455677788899999999999999875 56799999998877655433221
Q ss_pred ---cceEEEEEeCCCCEEEEEeCC
Q 001160 589 ---RSLGVVQFDTTRNRFLAAGDE 609 (1134)
Q Consensus 589 ---~~v~~~~~~~~~~~l~~~~~d 609 (1134)
.....+.|+|||++|+....|
T Consensus 168 ~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 168 EVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eecCCccccEECCCCCccceeEec
Confidence 123456788888888876543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=1e-09 Score=119.76 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=151.2
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCC-CeEEEEe-cCCCCceEEEEEcCCCCcE--EEEEe-CCCcEEEEEcCC-
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMT-FKVMTMF-MSPPPAATFLAFHPQDNNI--IAIGM-EDSSVQIYNVRV- 913 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-~~~~~~~-~~~~~~i~~l~~s~~~~~~--lasg~-~dg~i~iwd~~~- 913 (1134)
...+.-++|++|+++|.++..+.+..|.+.. +...... .........+++++ +++. ++++. ..++|..+.+..
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence 4456779999999999988877888887764 2222221 11233456778888 6763 33322 235565554321
Q ss_pred ceE---------------E-EEecCcccceEEEEEecCCCEEEEEcC-CCcEEEEeCCCccccc-ceeeecCCCCCCCCc
Q 001160 914 DEV---------------K-TKLKGHQNRITGLAFSPTLNALVSSGA-DAQLCMWSIDKWEKLK-SRFIQAPAGRQSPLV 975 (1134)
Q Consensus 914 ~~~---------------~-~~l~~h~~~i~~l~~s~d~~~l~s~~~-D~~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~ 975 (1134)
+.. . ..-+.....+.+++|+|||++|++++. ...|.+|+......+. ......... ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g~ 193 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----GD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----TC
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----CC
Confidence 110 0 011122234779999999998887763 4568888765433221 111111111 14
Q ss_pred CceEEEECCCCcEEEEE--ECCeEEEEeCCCccee---c------cCC--------CCCCCCCeEEEEEccCCCEEEEEe
Q 001160 976 GETKVQFHNDQTHLLVV--HESQISVYDSKLECSR---S------WSP--------KDALPAPISSAIYSCDGLLVYAGF 1036 (1134)
Q Consensus 976 ~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~~~~---~------~~~--------~~~h~~~v~~v~~s~dg~~l~~~~ 1036 (1134)
....++|+|||+++.+. .+++|.+|+.+..... . ... ...+......+.++|||++|+++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn 273 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS 273 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence 68999999999999885 3688999998332211 1 000 011123456789999999998774
Q ss_pred c------CCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEE-eCCCcEEEEecCCCc
Q 001160 1037 C------DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALG-MSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1037 ~------dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~-~~Dg~v~vW~~~~~~ 1103 (1134)
. .+.|..|++.....+.+..... ........+.+++++|.+|++|+++ ..++.|.+|+++...
T Consensus 274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 274 RANKFELQGYIAGFKLRDCGSIEKQLFLS----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EESSTTSCCEEEEEEECTTSCEEEEEEEE----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ccCCCccceEEEEEEecCCCceeeEeEee----EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 3 2238888876543332221100 0112225677888998777866655 567899999987554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=1.8e-08 Score=109.53 Aligned_cols=160 Identities=13% Similarity=0.154 Sum_probs=102.7
Q ss_pred ceEEEEeccCCCEEEEEe--CCeEEEEECCCC-eEE--EEe--cCCCCceEEEEEcCCCCcEEEE-EeCCCcEEEEEcCC
Q 001160 842 SAACIALSKNDSYVMSAS--GGKVSLFNMMTF-KVM--TMF--MSPPPAATFLAFHPQDNNIIAI-GMEDSSVQIYNVRV 913 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~-~~~--~~~--~~~~~~i~~l~~s~~~~~~las-g~~dg~i~iwd~~~ 913 (1134)
.+.+++|+|||+++++++ .+.|.+|+.... ... ... .........++|+| +++++.+ ...+++|.+|++..
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence 478899999999999887 467888876543 222 122 22345689999999 7777654 44678999999876
Q ss_pred ceEEE-----Eec--------------CcccceEEEEEecCCCEEEEEcC-C-----CcEEEEeCCCcccccc-eeeecC
Q 001160 914 DEVKT-----KLK--------------GHQNRITGLAFSPTLNALVSSGA-D-----AQLCMWSIDKWEKLKS-RFIQAP 967 (1134)
Q Consensus 914 ~~~~~-----~l~--------------~h~~~i~~l~~s~d~~~l~s~~~-D-----~~i~iWd~~~~~~~~~-~~~~~~ 967 (1134)
++... .+. .+......+.++|||++|+++.+ + ..|..|++.....+.. ..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 53221 111 12223567899999999887643 1 2377777654332211 111111
Q ss_pred CCCCCCCcCceEEEECC-CCcEEEEE--ECCeEEEEeCCCc
Q 001160 968 AGRQSPLVGETKVQFHN-DQTHLLVV--HESQISVYDSKLE 1005 (1134)
Q Consensus 968 ~~~~~~~~~v~~~~fsp-dg~~l~~~--~d~~v~vwd~~~~ 1005 (1134)
.. .......++|+| +|++|+++ .++.|.+|+++.+
T Consensus 305 ~~---~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PT---SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SS---CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred Ec---CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 10 002457899998 89998885 5689999987433
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.10 E-value=2.5e-08 Score=105.46 Aligned_cols=244 Identities=9% Similarity=0.021 Sum_probs=162.8
Q ss_pred ccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeE
Q 001160 333 DDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVN 412 (1134)
Q Consensus 333 ~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 412 (1134)
+..+.+.+.++.....+..++++|||+ |+++...+++|..|+....... +......+.
T Consensus 14 ~~~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~ 71 (302)
T d2p4oa1 14 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVS 71 (302)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEE
T ss_pred cCCcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcc
Confidence 344566677777656799999999998 7888888999888886543221 223556799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEE
Q 001160 413 RCVWGPDGLMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYT 492 (1134)
Q Consensus 413 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~ 492 (1134)
+++|++||+++++...++.+..|+............-.........+++.+++. ++++.+.++.+..+|...+.....
T Consensus 72 gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~ 149 (302)
T d2p4oa1 72 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 149 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeE
Confidence 999999999999988888888888765433221111123445688999999998 788888899999999887754322
Q ss_pred ec----------CCCCCeEEEEeeccCCccEEEEEecCCeEEEEEccCCCcee--EecCCCCcEEEEEECCCCCEEEEEe
Q 001160 493 FE----------GHEAPVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRV--DYDAPGNWCTMMAYSADGTRLFSCG 560 (1134)
Q Consensus 493 ~~----------~h~~~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~ 560 (1134)
.. ........+.+. + +.++++.+..+.|..+++....... ...........+++.++|++.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~ngi~~~--~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~ 226 (302)
T d2p4oa1 150 LEHPMLARSNSESVFPAANGLKRF--G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH 226 (302)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEEE--T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred ecCCccceeeccCccccccccccc--C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc
Confidence 21 112234555553 2 2567777788899888877644322 1111233456799999999776654
Q ss_pred eCCCCCCcEEEEeCCCCeeEEEe--cCccCcceEEEEE---eCCCCEEEEEeCC
Q 001160 561 TSKEGESHLVEWNESEGAIKRTY--SGFRKRSLGVVQF---DTTRNRFLAAGDE 609 (1134)
Q Consensus 561 ~~~~~~~~i~~wd~~~~~~~~~~--~~~~~~~v~~~~~---~~~~~~l~~~~~d 609 (1134)
.++.|..++... +..... ..... ..++++| ++|++.|+.++..
T Consensus 227 ----~~~~V~~i~p~G-~~~~~~~~~~~~~-~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 ----IYNSVVRIAPDR-STTIIAQAEQGVI-GSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ----TTCCEEEECTTC-CEEEEECGGGTCT-TEEEEEECCSTTTTTEEEEEECT
T ss_pred ----CCCcEEEECCCC-CEEEEEecCCCCC-CceEEEEcCCCCCCCEEEEECCC
Confidence 366798888754 332222 22222 5788999 6778887766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=4.2e-08 Score=101.95 Aligned_cols=223 Identities=10% Similarity=0.079 Sum_probs=135.0
Q ss_pred ccCCcCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 405 NDAAISVNRCVWGPDGLMLGVAFSKH---IVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 405 ~~h~~~V~~i~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..+...+...+|||||++||...... .+.+.+..++... .+..+........|+|+|+.+ +.....++...+
T Consensus 35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~ 109 (269)
T d2hqsa1 35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNL 109 (269)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEE
T ss_pred ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccce
Confidence 34667788999999999999875433 5667777665432 344677888999999999952 223333333333
Q ss_pred --EECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCe--EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEE
Q 001160 482 --WDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLF 557 (1134)
Q Consensus 482 --wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 557 (1134)
+....... ..............+++... ..+++...++. |.+.++..... ..............|+|+++.++
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 110 YVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEETTTCCE-EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred eecccccccc-eeeeeccccccccccccccc-cceecccccCCceEeeeecccccc-eeeecccccccccccccccceeE
Confidence 33222322 22223333444444544432 34555555555 44445544332 23344556777889999999999
Q ss_pred EEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeeEEEEeCCCCCCC
Q 001160 558 SCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG---DEFQIKFWDMDNMNMLTTVDADGGLPA 634 (1134)
Q Consensus 558 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1134)
..... .+...+.+.+...+.... .. ... ......|+|||+.|+..+ ....|+++++..+.... +... ...
T Consensus 187 ~~~~~-~~~~~i~~~~~~~~~~~~-~~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~ 259 (269)
T d2hqsa1 187 MVSSN-GGQQHIAKQDLATGGVQV-LS-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQ 259 (269)
T ss_dssp EEEEC-SSCEEEEEEETTTCCEEE-CC-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSE
T ss_pred EEeec-CCceeeeEeecccccceE-ee-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CCc
Confidence 87653 234456666666555432 22 222 456788999999987654 34578999998776544 3322 235
Q ss_pred cceEEEcc
Q 001160 635 SPRLRFNK 642 (1134)
Q Consensus 635 v~~~~~s~ 642 (1134)
+...+|||
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 66788988
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.5e-08 Score=107.41 Aligned_cols=334 Identities=10% Similarity=0.056 Sum_probs=186.6
Q ss_pred cccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec---------cCeeEEee
Q 001160 730 GSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS---------NAVHKLWK 800 (1134)
Q Consensus 730 ~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------dg~v~vw~ 800 (1134)
..+.+++.++....++.+.+|++.+.... .+.-........+....+||||++++.... .+.+.+||
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTST----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCE----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEE----EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 34566777776677789999999865332 211122223346778899999998876643 23444444
Q ss_pred cccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecC-
Q 001160 801 WQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS- 879 (1134)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~- 879 (1134)
+.++......... .. ...+....|||||+.||...++.|.+.+..++..++....
T Consensus 98 ----------------------~~~~~~~~l~~~~-~~-~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g 153 (465)
T d1xfda1 98 ----------------------IPHGDPQSLDPPE-VS-NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTG 153 (465)
T ss_dssp ----------------------SSSCCCEECCCTT-CC-SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCC
T ss_pred ----------------------ccCCceeeccCcc-CC-ccccceeeeccCCceEEEEecceEEEEecCCCceEEEeccc
Confidence 4444332211111 11 3455668899999999999999999999887765554432
Q ss_pred CCCc-----------------eEEEEEcCCCCcEEEEEeC-CCc---------------------------------EEE
Q 001160 880 PPPA-----------------ATFLAFHPQDNNIIAIGME-DSS---------------------------------VQI 908 (1134)
Q Consensus 880 ~~~~-----------------i~~l~~s~~~~~~lasg~~-dg~---------------------------------i~i 908 (1134)
..+. -.++-||| ||+.||.... +.. +.+
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v 232 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEE
Confidence 1111 25778999 8998887652 233 334
Q ss_pred EEcCCceEEEEe------cCcccceEEEEEecCCCEEEEEcC-C---CcEEEEeCCCcccccceeeecCCCCCCCCcCce
Q 001160 909 YNVRVDEVKTKL------KGHQNRITGLAFSPTLNALVSSGA-D---AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGET 978 (1134)
Q Consensus 909 wd~~~~~~~~~l------~~h~~~i~~l~~s~d~~~l~s~~~-D---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~ 978 (1134)
+|+.++...... .....-+..+.|++|+++++.... + ..+.++|..+++..... .....+-.. ....
T Consensus 233 ~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~-~e~~~~wv~--~~~~ 309 (465)
T d1xfda1 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-EDESEAWLH--RQNE 309 (465)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE-EEECSSCCC--CCCC
T ss_pred EecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE-EEcCCceEe--ccCC
Confidence 444433221111 111123678899999987665432 2 25888999988754321 111111110 1124
Q ss_pred EEEECCCCcEEEE---E-EC--CeEEEEeC-------CCcceeccCCCCCCCCCeEEE-EEccCCCEEE-EEecCC----
Q 001160 979 KVQFHNDQTHLLV---V-HE--SQISVYDS-------KLECSRSWSPKDALPAPISSA-IYSCDGLLVY-AGFCDG---- 1039 (1134)
Q Consensus 979 ~~~fspdg~~l~~---~-~d--~~v~vwd~-------~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~-~~~~dg---- 1039 (1134)
...|+|||+.++. . .+ +.+..+.+ .++.++.+..+ .-.|..+ +|+++++.|+ ++..++
T Consensus 310 ~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G---~w~V~~i~~~d~~~~~vyF~a~~~~p~~~ 386 (465)
T d1xfda1 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG---DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (465)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS---SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred ceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC---CceEEEEEEEcCCCCEEEEEEeCCCCCce
Confidence 5689999985443 2 22 34544432 33333333322 4566665 6888887664 444432
Q ss_pred cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCC---CcEEEEecCCCcccc
Q 001160 1040 AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSD---GAVHVVEPSDAELKW 1106 (1134)
Q Consensus 1040 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~D---g~v~vW~~~~~~~~~ 1106 (1134)
.++--++..+.....+.+.. ........+.|+| ++++++..+.. -.+.+++..+++...
T Consensus 387 hly~v~l~g~~~~~~lt~~~-------~~~~~~~~~~~S~-~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 387 QLYSANTVGNFNRQCLSCDL-------VENCTYFSASFSH-SMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp EEEEECSSTTCCCBCSSTTS-------SSSCCCCEEEECT-TSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred EEEEEECCCCCcceeecccc-------CCCCCEEEEEECC-CCCEEEEEeecCCCCeEEEEECCCCCEEE
Confidence 24444444433332222110 1112334788999 77888754443 357788877666433
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=9.1e-08 Score=99.62 Aligned_cols=241 Identities=10% Similarity=0.111 Sum_probs=165.6
Q ss_pred ceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCC------CCceEEEEEcCCCCcEEEEE-eCCCcEEEEEcCC
Q 001160 842 SAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSP------PPAATFLAFHPQDNNIIAIG-MEDSSVQIYNVRV 913 (1134)
Q Consensus 842 ~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~lasg-~~dg~i~iwd~~~ 913 (1134)
....++++++|+.+++-. +..|++||.+ ++.+..+... ......+++.++.+.++++. +.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 458899999999776654 7889999975 6777666421 11245667666345555443 34567777775 4
Q ss_pred ceEEEEec-CcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-
Q 001160 914 DEVKTKLK-GHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV- 991 (1134)
Q Consensus 914 ~~~~~~l~-~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~- 991 (1134)
++....+. ........+++.++++++++....+.+.+++... +.+.. ... ..+ ......+++.++|+.+++
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~--~g~-~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeec--ccc-ccc---ccccceeeeccceeEEeee
Confidence 55555553 3455678999999999888888778888887654 32211 111 111 145688999999988777
Q ss_pred EECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEeCCCcceeeecCCcccccccccCCCC
Q 001160 992 VHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFC-DGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTA 1070 (1134)
Q Consensus 992 ~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~-dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1134)
...+.|.+||.+++.+..+.. .++......|++.++|+++++-.. ++.|.+|+. +|+.+..+... ....
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~--------~~~~ 244 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------VKHA 244 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------SCCS
T ss_pred ccccceeeeecCCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCC--------CCCC
Confidence 457899999998887776642 344567889999999997776544 457999984 58877666422 1124
Q ss_pred ccEEEeecCCCCCEEEEEeCCCcEEEEecCCCc
Q 001160 1071 HPLVIAPHPSEPNQIALGMSDGAVHVVEPSDAE 1103 (1134)
Q Consensus 1071 ~~~~~~~~~~d~~~l~s~~~Dg~v~vW~~~~~~ 1103 (1134)
.+..++..| ||++++ ++.+++|++|+..+..
T Consensus 245 ~p~~vav~~-dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 245 QCFDVALMD-DGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CEEEEEEET-TTEEEE-EETTTEEEEEECSCCC
T ss_pred CEeEEEEeC-CCcEEE-EeCCCeEEEEEeeeec
Confidence 577888888 676555 5679999999987643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=5.7e-08 Score=100.89 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=150.2
Q ss_pred cccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCCc--EEEEEccCccccccccceeecccccccccccccccc
Q 001160 329 VYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVGD--ISLWEVGSRERLAHKPFKVWDISAASMPLQNALLND 406 (1134)
Q Consensus 329 ~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (1134)
+|..|...++....+.+...+...+|||||++|+++....+. +.+.+..++.... +..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eee
Confidence 555555555555556677889999999999987766655553 4455555443321 345
Q ss_pred CCcCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCC--cEEEEE
Q 001160 407 AAISVNRCVWGPDGLMLGVAFS-KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDK--MIKVWD 483 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~--~i~iwd 483 (1134)
+.+.+....|||||+.++.... ++...++........ ...............+++++.. .+++...++ .|.+.+
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeeccccccc--ceeeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7788899999999999988654 333233322221111 1122234445566778888875 455555555 455566
Q ss_pred CCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEe-cCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 484 VVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTA-IDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 484 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
+..+.. ..+..+........++|++ ..++..+ ..+...+|..+...................|+|||+.|+..+..
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 158 INGGAP-QRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp TTSSCC-EECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred cccccc-eeeeccccccccccccccc--ceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC
Confidence 555543 3444456666777787765 5555544 45556666555544445555556667788999999999866542
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT 598 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 598 (1134)
.+...|+++++..+... .+..... .+...+|+|
T Consensus 235 -~~~~~l~~~~~dg~~~~-~lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 -GMGSVLNLVSTDGRFKA-RLPATDG-QVKFPAWSP 267 (269)
T ss_dssp -TTEEEEEEEETTSCCEE-ECCCSSS-EEEEEEECC
T ss_pred -CCCcEEEEEECCCCCEE-EEeCCCC-cEEeEEeCC
Confidence 34567999999876654 4444433 677888988
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=5.6e-08 Score=108.93 Aligned_cols=384 Identities=10% Similarity=0.046 Sum_probs=207.4
Q ss_pred EEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCcc--CcceEEEEEeCCCCEEEEEe---------CCCeEEEE
Q 001160 547 MAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFR--KRSLGVVQFDTTRNRFLAAG---------DEFQIKFW 615 (1134)
Q Consensus 547 ~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw 615 (1134)
..|.+++.++.. +.++.|.+||+.+++....+.... ...+....|+||+++++... ..+.+.++
T Consensus 22 ~~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence 357788876653 235679999999887544343322 22466788999999988764 35788999
Q ss_pred ECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEEEEECCCchhhhhhhc-CCcccccCCCCCCCCCCCcccc
Q 001160 616 DMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILANSDGVRLLRMLE-GRAMDKNRCPSEPISSKPLTIN 694 (1134)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 694 (1134)
|+.+++.............+....|||||+.||... ++.|.+.+..++. ..+... +...
T Consensus 97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~~------------------ 156 (465)
T d1xfda1 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKEG------------------ 156 (465)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBTT------------------
T ss_pred EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCcc------------------
Confidence 999887655433333334566789999999998876 5577777766552 111110 0000
Q ss_pred ccCCCcccccccCCCCCCCCCCCCCcccCccCCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccc
Q 001160 695 ALGPASNVSAAIAPTLERPDRGPPAVSISSLGTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASK 774 (1134)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1134)
.+.. .+.-|-.+.. -...
T Consensus 157 -------------------------------------------~i~n----G~~d~vyeee---------------~~~~ 174 (465)
T d1xfda1 157 -------------------------------------------VIYN----GLSDWLYEEE---------------ILKT 174 (465)
T ss_dssp -------------------------------------------TEEE----EECCHHHHHT---------------TSSS
T ss_pred -------------------------------------------eeec----cccchhhhhh---------------hccc
Confidence 0000 0000100000 0011
Q ss_pred eEEEEEecCCcceEEeecc-CeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 775 VVRLIYTNSGLSLLALASN-AVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 775 v~~~~~s~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
-..+.|||||++|+....| ..+..+.+.... +. . ...+..+.+..-|.
T Consensus 175 ~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~--------------------~~----------~-~p~~~~~~Yp~~G~ 223 (465)
T d1xfda1 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------GS----------I-YPTVKPYHYPKAGS 223 (465)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------SS----------S-SCCCEEEECCBTTS
T ss_pred cceEEECCCCCeEEEEEecccccceeeccccc--------------------cc----------c-cceeeeeeccccCC
Confidence 2467899999999887654 445555432100 00 0 11122222222111
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEec------CCCCceEEEEEcCCCCcEEEEEeC-C---CcEEEEEcCCceEEEEecCc
Q 001160 854 YVMSASGGKVSLFNMMTFKVMTMFM------SPPPAATFLAFHPQDNNIIAIGME-D---SSVQIYNVRVDEVKTKLKGH 923 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~s~~~~~~lasg~~-d---g~i~iwd~~~~~~~~~l~~h 923 (1134)
--. ...+.|+|+.++....... ....-+..+.|++ ++++++.... + ..|.++|..+|++...+..+
T Consensus 224 ~np---~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 224 ENP---SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp CCC---EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCC---ceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 100 1357788887654432221 1222367899999 7776665432 2 36888999999876655432
Q ss_pred ccc-----eEEEEEecCCCEEEE---EcCCC--cEEEEeCCCccc--ccceeeecCCCCCCCCcCceEE-EECCCCcEEE
Q 001160 924 QNR-----ITGLAFSPTLNALVS---SGADA--QLCMWSIDKWEK--LKSRFIQAPAGRQSPLVGETKV-QFHNDQTHLL 990 (1134)
Q Consensus 924 ~~~-----i~~l~~s~d~~~l~s---~~~D~--~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~-~fspdg~~l~ 990 (1134)
... -....|++||+.++. .-.+| .+....+..... ..........|. -.|..+ +|..+++.+.
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~----w~V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD----WDVTKILAYDEKGNKIY 375 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS----SCEEEEEEEETTTTEEE
T ss_pred CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC----ceEEEEEEEcCCCCEEE
Confidence 221 134678999985432 22222 344333321110 000011111111 345554 6899888776
Q ss_pred E-EE-----CCeEEEEeCCCcceec-cCCCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEeCCCcceeeecC
Q 001160 991 V-VH-----ESQISVYDSKLECSRS-WSPKDALPAPISSAIYSCDGLLVYAGFCD---GAIGVFDAETLRFRCRIG 1056 (1134)
Q Consensus 991 ~-~~-----d~~v~vwd~~~~~~~~-~~~~~~h~~~v~~v~~s~dg~~l~~~~~d---g~I~vwd~~~~~~~~~~~ 1056 (1134)
. +. ...+.--++.+..... +...........++.|||||++++..... =.+.+++..+++.+..+.
T Consensus 376 F~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 376 FLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp EEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred EEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 5 42 1234444444332222 22122224567799999999998754432 348888888888887764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=7e-08 Score=99.30 Aligned_cols=236 Identities=9% Similarity=0.043 Sum_probs=156.3
Q ss_pred CCceEEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEE
Q 001160 840 EESAACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVK 917 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~ 917 (1134)
......++++++|...++.. .+.+..++............-......+++++ +++++++....+.+++++-.++..+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceee
Confidence 44568999999999766654 57777777654433322222233467899999 8888887777777777765555544
Q ss_pred EEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEE-EECCe
Q 001160 918 TKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHESQ 996 (1134)
Q Consensus 918 ~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d~~ 996 (1134)
....+ .....++++.++++++++-..+..+..++...... ......+. .....+++.++|+.+++ ..++.
T Consensus 92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~~ 162 (260)
T d1rwia_ 92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNNR 162 (260)
T ss_dssp CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGTE
T ss_pred eeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeecccccc
Confidence 33332 34568999999999888877777777777665331 11111111 34678999999998777 46778
Q ss_pred EEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccccCCCCccEEEe
Q 001160 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIA 1076 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1134)
|..++.++.....+... .......|++.++|+++++....+.|..++...... ..+.. ..-..|.+++
T Consensus 163 i~~~d~~~~~~~~~~~~--~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~---------~~~~~P~~i~ 230 (260)
T d1rwia_ 163 VVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF---------TGLNTPLAVA 230 (260)
T ss_dssp EEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCC---------CSCCCEEEEE
T ss_pred ccccccccceeeeeecc--ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEcc---------CCCCCeEEEE
Confidence 99999966554444322 245678999999999888887788898888765432 22111 1224677899
Q ss_pred ecCCCCCEEEEEeCCCcEEEEe
Q 001160 1077 PHPSEPNQIALGMSDGAVHVVE 1098 (1134)
Q Consensus 1077 ~~~~d~~~l~s~~~Dg~v~vW~ 1098 (1134)
+++ +|+++++-..+++|+..+
T Consensus 231 ~d~-~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 231 VDS-DRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp ECT-TCCEEEEEGGGTEEEEEC
T ss_pred EeC-CCCEEEEECCCCEEEEEe
Confidence 998 678888877777665444
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=1.7e-07 Score=97.46 Aligned_cols=245 Identities=12% Similarity=0.126 Sum_probs=165.2
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCC-
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKND- 852 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg- 852 (1134)
....++++++|+.+++-..++.|++|+.. |...... - ..+. .... ......+++..+.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~-----~-~~~~-------~~~~-~~~p~~~~~~~~~~ 82 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQF-----G-ECGK-------RDSQ-LLYPNRVAVVRNSG 82 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEE-----C-CBSS-------STTC-BSSEEEEEEETTTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEe-----c-ccCC-------Cccc-cccccccccccccc
Confidence 45789999999977776777889988742 2221110 0 0000 0001 2234556665554
Q ss_pred CEEEEEe--CCeEEEEECCCCeEEEEec-CCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEe--cCcccce
Q 001160 853 SYVMSAS--GGKVSLFNMMTFKVMTMFM-SPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKL--KGHQNRI 927 (1134)
Q Consensus 853 ~~la~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l--~~h~~~i 927 (1134)
.++++.. ++.|.+++.. ++....+. ........+++.+ +++++++....+.+.+++. +++.+..+ ..+....
T Consensus 83 ~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 83 DIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFP 159 (279)
T ss_dssp EEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred ccceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeeccccccccccc
Confidence 4444443 5678888864 56666654 3445678999999 8888888777788999985 45666655 3456678
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE--ECCeEEEEeCCCc
Q 001160 928 TGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV--HESQISVYDSKLE 1005 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~--~d~~v~vwd~~~~ 1005 (1134)
..+++.++++++++....+.|++||... +.+.. + ...+. ...+..+++.++|+.+++- .++.|.+|+.+++
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~--~-g~~g~---~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQ--I-GGEGI---TNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEE--E-SCTTT---SCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred ceeeeccceeEEeeeccccceeeeecCC-ceeee--e-ccccc---ccCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence 8999999999999988899999999765 32111 1 11222 2457899999999988773 3457999999888
Q ss_pred ceeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce
Q 001160 1006 CSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF 1051 (1134)
Q Consensus 1006 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~ 1051 (1134)
.+..+.... .......|++.+||.+++ ++.+.+|++|...+...
T Consensus 233 ~~~~~~~~~-~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 233 LISALESKV-KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEEEEEESS-CCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEEEEeCCC-CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 776654322 134688999999998655 56789999999887543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.92 E-value=7.5e-08 Score=101.65 Aligned_cols=232 Identities=9% Similarity=0.056 Sum_probs=148.2
Q ss_pred CceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc--eEE
Q 001160 841 ESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD--EVK 917 (1134)
Q Consensus 841 ~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~--~~~ 917 (1134)
..+..++++|||+++++.. +++|..|+... +. ..+......+.+++|++ +|+++++...++.+..|+.... ...
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999988877 89898888654 32 33444567899999999 8899998888888888886543 221
Q ss_pred EE-ecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecC----CCCCCCCcCceEEEECCCCcEEEE-
Q 001160 918 TK-LKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAP----AGRQSPLVGETKVQFHNDQTHLLV- 991 (1134)
Q Consensus 918 ~~-l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~fspdg~~l~~- 991 (1134)
.. -.........+++.++++++++.+.++.+..++..++.... ..... .........+..+.++ +..+..
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~ 180 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI--WLEHPMLARSNSESVFPAANGLKRF--GNFLYVS 180 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE--EEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEE
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCccee--EecCCccceeeccCccccccccccc--CCceeee
Confidence 11 12244567899999999999998888988888887754221 11110 0111111234455554 444554
Q ss_pred -EECCeEEEEeCCCcc-eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcce-eeecCCcccccccccCC
Q 001160 992 -VHESQISVYDSKLEC-SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRF-RCRIGPSAYIPTYAVSN 1068 (1134)
Q Consensus 992 -~~d~~v~vwd~~~~~-~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~ 1068 (1134)
...+.|..++..... ...... .........++|++||++.++...++.|..++...... +.... ..
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~----------~~ 249 (302)
T d2p4oa1 181 NTEKMLLLRIPVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE----------QG 249 (302)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG----------GT
T ss_pred cCCCCeEEecccccccccccccc-ccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC----------CC
Confidence 456788888873221 111100 00123456799999999888887899999998764321 22221 11
Q ss_pred CCccEEEeec---CCCCCEEEEEeCC
Q 001160 1069 TAHPLVIAPH---PSEPNQIALGMSD 1091 (1134)
Q Consensus 1069 ~~~~~~~~~~---~~d~~~l~s~~~D 1091 (1134)
...+.+++|. + |++.|..++..
T Consensus 250 ~~~pt~vafg~~~~-D~~~Lyvtt~~ 274 (302)
T d2p4oa1 250 VIGSTAVAFGQTEG-DCTAIYVVTNG 274 (302)
T ss_dssp CTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred CCCceEEEEcCCCC-CCCEEEEECCC
Confidence 2457789994 4 66666554433
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=2.2e-07 Score=95.45 Aligned_cols=240 Identities=8% Similarity=-0.048 Sum_probs=150.6
Q ss_pred CCCeeEEEEecCCCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEE
Q 001160 346 GSNVMSMDFHPQQQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGV 425 (1134)
Q Consensus 346 ~~~V~~v~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las 425 (1134)
.-...+++++++|..+++..+..+.|..++......... ..+-......++++++|+++++
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~ 73 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVT 73 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEe
Confidence 346789999999984444445557777776654432211 1111234568899999998877
Q ss_pred EeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEe
Q 001160 426 AFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCP 505 (1134)
Q Consensus 426 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~ 505 (1134)
....+.+++++-.++..+. .. .......++++.+++. ++++-..+..+..++..................++++
T Consensus 74 d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 147 (260)
T d1rwia_ 74 DFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 147 (260)
T ss_dssp ETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEE
T ss_pred eeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeee
Confidence 7777667666554443222 11 2234578999999998 6666666777888875543322211122344567888
Q ss_pred eccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecC
Q 001160 506 HHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSG 585 (1134)
Q Consensus 506 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 585 (1134)
.+. |.++++...++.|..+|.+.................+++.++|+++++.. ..+.|..++..... ...+..
T Consensus 148 ~~~--g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~----~~~~i~~~~~~~~~-~~~~~~ 220 (260)
T d1rwia_ 148 DNS--GNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTT-STVLPF 220 (260)
T ss_dssp CTT--CCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTTEEEEECTTCSC-CEECCC
T ss_pred cCC--CCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec----CCCEEEEEeCCCCe-EEEEcc
Confidence 664 47888888889999998776544433334445678999999998877764 35678888765433 222222
Q ss_pred ccCcceEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 001160 586 FRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDM 617 (1134)
Q Consensus 586 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 617 (1134)
..-.....++++++|+.+++-..++.|+.++.
T Consensus 221 ~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 221 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 21124678999999988777666777776554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.79 E-value=1.9e-06 Score=91.04 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=150.0
Q ss_pred CCceEEEEeccCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCC----CcEEEEEcCCc
Q 001160 840 EESAACIALSKNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMED----SSVQIYNVRVD 914 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~d----g~i~iwd~~~~ 914 (1134)
...+..++|.++|++.++-. +++|..|+.++++....+.........++|++ +|+++++...+ +.+...+..++
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 33457899999999666554 78999999988776666665666789999999 88887765432 34555555555
Q ss_pred eEEEEecC--cccceEEEEEecCCCEEEEEcCC------CcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 915 EVKTKLKG--HQNRITGLAFSPTLNALVSSGAD------AQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 915 ~~~~~l~~--h~~~i~~l~~s~d~~~l~s~~~D------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
........ -......+++.++|++.++.... +.+..++.+.+.. . ...... .....++|+||+
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~-~~~~~~-------~~pnGia~s~dg 188 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-T-PIIQNI-------SVANGIALSTDE 188 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-E-EEEEEE-------SSEEEEEECTTS
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-E-EEeecc-------ceeeeeeecccc
Confidence 44333321 12346789999999987764321 2344444443221 1 111111 235789999999
Q ss_pred cEEEEE--ECCeEEEEeCC--Ccceecc----CCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCc
Q 001160 987 THLLVV--HESQISVYDSK--LECSRSW----SPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPS 1058 (1134)
Q Consensus 987 ~~l~~~--~d~~v~vwd~~--~~~~~~~----~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~ 1058 (1134)
+.|.++ ..+.|..|+++ +...... ............+++.++|++.++....+.|.+||- +|+.+.++...
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P 267 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 267 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence 977664 47899999872 2222111 001111233568999999998888888999999995 68988887643
Q ss_pred ccccccccCCCCccEEEeecCCCCCEEEEEe
Q 001160 1059 AYIPTYAVSNTAHPLVIAPHPSEPNQIALGM 1089 (1134)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~ 1089 (1134)
....++...+.+++|.|. .+.+++..
T Consensus 268 ----~~~~~~~~~~~~~~~~~~-~~~~~~t~ 293 (319)
T d2dg1a1 268 ----GRDEGHMLRSTHPQFIPG-TNQLIICS 293 (319)
T ss_dssp ----TGGGTCSCBCCEEEECTT-SCEEEEEE
T ss_pred ----CcCCCcCceeeeEEEeCC-CCEEEEEc
Confidence 222234456679999884 45555444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.78 E-value=1.7e-06 Score=91.01 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=155.6
Q ss_pred CeeEEEEecCCCeEEEEEeC-------CCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCC
Q 001160 348 NVMSMDFHPQQQTILLVGTN-------VGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDG 420 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg 420 (1134)
...+++|.|+|+ ++++... +|+|..||..++...... . .......+.-..++|.++|
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~------~---------~~~~~~~g~P~Gl~~~~dg 82 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC------K---------PEVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE------C---------CEETTEECCEEEEEECSSS
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEE------C---------CccccCCCcceeEEEeCCC
Confidence 466789999998 4544322 357888888876543210 0 0001112335689999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceeeEEeccc-CCeeEEEEecCCCcEEEEEEcC---------------CCcEEEEEC
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGELRQHLEIDAHV-GGVNDIAFAHPNKQLCIVTCGD---------------DKMIKVWDV 484 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~sg~~---------------d~~i~iwd~ 484 (1134)
+.++++...+.|...+.+++..........+.. ...+.+++.++|. +.+|-.. ++.|..++.
T Consensus 83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~ 160 (314)
T d1pjxa_ 83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence 988888887889999987653221110111111 1357899999998 5555321 234555553
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCc---cEEEEEecCCeEEEEEccCCCcee------EecC-CCCcEEEEEECCCCC
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESI---QFIFSTAIDGKIKAWLYDYLGSRV------DYDA-PGNWCTMMAYSADGT 554 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~------~~~~-~~~~v~~~~~s~~~~ 554 (1134)
+++..... ..-..-+.++|+++.++ .+.++-+..+.|..||+....... .+.. .......+++.++|+
T Consensus 161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 34433322 23334567889887643 244555678899999887554332 1111 122456899999999
Q ss_pred EEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEE-EEEeCCCeEEEEECCC
Q 001160 555 RLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRF-LAAGDEFQIKFWDMDN 619 (1134)
Q Consensus 555 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 619 (1134)
..++.. +.+.|.+||.+.++.+..+..... ...+++|.|+++.| ++.+.++.|+..++..
T Consensus 239 lyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 239 LLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 877654 367799999988887777765544 67889999999755 5566778888887653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.72 E-value=4e-06 Score=88.15 Aligned_cols=242 Identities=11% Similarity=0.043 Sum_probs=148.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCccceee-EEecccCCeeEEEEecCCCcEEEEEEcCCCcEEE
Q 001160 410 SVNRCVWGPDGLMLGVAFS-------KHIVHLYTYNPTGELRQHL-EIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKV 481 (1134)
Q Consensus 410 ~V~~i~~spdg~~las~~~-------dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~i 481 (1134)
..-.++|.|+|++.++... +++|..||..++....... ....-.+.-..++|.+++. .+++++..+.|..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~--~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADMRLGLLV 96 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEETTTEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCC--EEEEEECCCeEEE
Confidence 3567899999998876533 4679999988765322110 1111122356799999998 5666666677888
Q ss_pred EECCCCeeeEEecCCCC----CeEEEEeeccCCccEEEEEec---------------CCeEEEEEccCCCceeEecCCCC
Q 001160 482 WDVVAGRKQYTFEGHEA----PVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLYDYLGSRVDYDAPGN 542 (1134)
Q Consensus 482 wd~~~~~~~~~~~~h~~----~v~~i~~~~~~~~~~l~s~~~---------------d~~i~~wd~~~~~~~~~~~~~~~ 542 (1134)
.|...+..........+ ..+.+++.++ |.+.++-.. +|.|..++. ......+...-.
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~--dg~~~~~~~~~~ 172 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT--DGQMIQVDTAFQ 172 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT--TSCEEEEEEEES
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCC--CCEEEecCccCcccccccceeccCCceEEEEee--cCceeEeeCCcc
Confidence 89765543221111111 2466777654 466665422 223433333 222222222222
Q ss_pred cEEEEEECCCCC----EEEEEeeCCCCCCcEEEEeCCCCeeE------EEecCccCcceEEEEEeCCCCEEEEEeCCCeE
Q 001160 543 WCTMMAYSADGT----RLFSCGTSKEGESHLVEWNESEGAIK------RTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQI 612 (1134)
Q Consensus 543 ~v~~~~~s~~~~----~l~~~~~~~~~~~~i~~wd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 612 (1134)
..+.++|+|+++ .|+.+.. ..+.|..|++.....+ ..+.+........+++..+|+.+++....+.|
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~---~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAET---PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET---TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred eeeeeEECCCCCcceeEEEEEee---cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 346788988765 4554432 4677888887543222 22222222245679999999988888788999
Q ss_pred EEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEE-EEEeCCCcEEEEECC
Q 001160 613 KFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLL-AVTTSDNGIKILANS 662 (1134)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iw~~~ 662 (1134)
++||.+.++.+..+..+. ....+++|.||++.| ++.+.+|.|..+++.
T Consensus 250 ~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 999999888777776543 256889999999755 555667888887764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.70 E-value=2.9e-06 Score=89.64 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=145.2
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
.+..++|.++|+..++-..++.|..|+. .++......... ......+++++||+
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p----------------------~g~~~~~~~~~~----~~~p~gla~~~dG~ 94 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINP----------------------ETKEIKRPFVSH----KANPAAIKIHKDGR 94 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECT----------------------TTCCEEEEEECS----SSSEEEEEECTTSC
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEEC----------------------CCCeEEEEEeCC----CCCeeEEEECCCCC
Confidence 4468899999986666556677766643 222222211222 45678999999999
Q ss_pred EEEEEe-C----CeEEEEECCCCeEEEEecC--CCCceEEEEEcCCCCcEEEEEeCC------CcEEEEEcCCceEEEEe
Q 001160 854 YVMSAS-G----GKVSLFNMMTFKVMTMFMS--PPPAATFLAFHPQDNNIIAIGMED------SSVQIYNVRVDEVKTKL 920 (1134)
Q Consensus 854 ~la~~s-d----g~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~lasg~~d------g~i~iwd~~~~~~~~~l 920 (1134)
++++.. + +.+...+..+......... .......+++.+ +|++.++.... +.+..++...+. +..+
T Consensus 95 l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~ 172 (319)
T d2dg1a1 95 LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPI 172 (319)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEE
T ss_pred EEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce-eEEE
Confidence 887753 2 3455566655544443332 223478899999 88877654321 335555544333 3333
Q ss_pred cCcccceEEEEEecCCCEE-EEEcCCCcEEEEeCCCcccccce----eeecCCCCCCCCcCceEEEECCCCcEEEE-EEC
Q 001160 921 KGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKLKSR----FIQAPAGRQSPLVGETKVQFHNDQTHLLV-VHE 994 (1134)
Q Consensus 921 ~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~iWd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~fspdg~~l~~-~~d 994 (1134)
...-.....|+|+||++.| ++-+..+.|..|+++........ ......+. ...-.+++.++|++.++ ...
T Consensus 173 ~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~----~~PdGl~vD~~G~l~Va~~~~ 248 (319)
T d2dg1a1 173 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQ 248 (319)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETT
T ss_pred eeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCc----cceeeeeEcCCCCEEEEEcCC
Confidence 2233345789999999865 55567788999988643221111 11111111 23568999999998777 567
Q ss_pred CeEEEEeCCCcceeccCCCC---CCCCCeEEEEEccCCCEEEEEecC
Q 001160 995 SQISVYDSKLECSRSWSPKD---ALPAPISSAIYSCDGLLVYAGFCD 1038 (1134)
Q Consensus 995 ~~v~vwd~~~~~~~~~~~~~---~h~~~v~~v~~s~dg~~l~~~~~d 1038 (1134)
+.|.+||.+++.+..+.... ++...+++++|.+++..+++.+.+
T Consensus 249 g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 249 GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 99999999888777664432 345568899999988877665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.46 E-value=1.1e-05 Score=83.64 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=129.6
Q ss_pred EEecC--CCeEEEEEeCCCcEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEEEEeC-C
Q 001160 353 DFHPQ--QQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFS-K 429 (1134)
Q Consensus 353 ~~spd--g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~-d 429 (1134)
..||| |+++++++ +|.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99776664 5678888999876532 4557778899999999999997642 1
Q ss_pred -----CeEEEEEcCCCCccceee---EEecccCCeeEEEEecCCCcEEEEEEcC------CCcEEEEECCCCeeeEEecC
Q 001160 430 -----HIVHLYTYNPTGELRQHL---EIDAHVGGVNDIAFAHPNKQLCIVTCGD------DKMIKVWDVVAGRKQYTFEG 495 (1134)
Q Consensus 430 -----g~i~iwd~~~~~~~~~~~---~~~~h~~~v~~l~~s~d~~~~~l~sg~~------d~~i~iwd~~~~~~~~~~~~ 495 (1134)
..|.+++..+++..+... ............+|+|||+ .|+.... ...+...+...+......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 247777887775432110 0112223457789999999 4554322 223555665555433221
Q ss_pred CCCCeEEEEeeccCCccEEEEEecCC-----------eEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCC
Q 001160 496 HEAPVYSVCPHHKESIQFIFSTAIDG-----------KIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKE 564 (1134)
Q Consensus 496 h~~~v~~i~~~~~~~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 564 (1134)
........+ +.+ +..++....+. ....+.... .................++++ .++... +.+
T Consensus 139 -~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~ 211 (281)
T d1k32a2 139 -LGPATHILF-ADG-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID 211 (281)
T ss_dssp -SCSCSEEEE-ETT-EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred -CCccceeee-cCC-CeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-ccc
Confidence 222222222 221 12222221111 111111111 112222222333444455554 333333 234
Q ss_pred CCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 565 GESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 565 ~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
+...|+++|+.+++..+ +..... .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus 212 ~~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred cccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 56679999988766443 333322 2334689999988764 468899999988875543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=9.8e-05 Score=76.32 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=126.7
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecC----CCCceEEEEEcCCCCcEEEEEeC----CCcEEEEEc
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMS----PPPAATFLAFHPQDNNIIAIGME----DSSVQIYNV 911 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~lasg~~----dg~i~iwd~ 911 (1134)
...+.++++.++|.++++. ...+.++|..+++....... ....++.+.+.| +|++.++... .+.-.+|.+
T Consensus 58 ~~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEE-eCccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeee
Confidence 5567899999999877754 45699999998876544321 123578999999 7887765432 235567777
Q ss_pred CCceEEEEecCcccceEEEEEecCCCEE-EEEcCCCcEEEEeCCCcccc--c-ceeeecCCCCCCCCcCceEEEECCCCc
Q 001160 912 RVDEVKTKLKGHQNRITGLAFSPTLNAL-VSSGADAQLCMWSIDKWEKL--K-SRFIQAPAGRQSPLVGETKVQFHNDQT 987 (1134)
Q Consensus 912 ~~~~~~~~l~~h~~~i~~l~~s~d~~~l-~s~~~D~~i~iWd~~~~~~~--~-~~~~~~~~~~~~~~~~v~~~~fspdg~ 987 (1134)
..++....+... ..-..++|+++++.| ++-+..+.|..++++..... . ........+.. ...-.+++..+|+
T Consensus 136 ~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~---g~pdG~~vD~~Gn 211 (295)
T d2ghsa1 136 AKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGH 211 (295)
T ss_dssp ETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSC
T ss_pred cCCcEEEEeecc-CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc---ccccceEEcCCCC
Confidence 777765554432 345789999999865 45556778888887542211 1 11111122211 3567899999999
Q ss_pred EEEEE-ECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEc-cCCCEEEEE
Q 001160 988 HLLVV-HESQISVYDSKLECSRSWSPKDALPAPISSAIYS-CDGLLVYAG 1035 (1134)
Q Consensus 988 ~l~~~-~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~~~ 1035 (1134)
+.++. ..+.|..||.+++.+..+... ...+++++|- +|.+.|+..
T Consensus 212 lWva~~~~g~V~~~dp~G~~~~~i~lP---~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 212 IWNARWGEGAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEEEETTTEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEE
T ss_pred EEeeeeCCCceEEecCCCcEeeEecCC---CCceEEEEEeCCCCCEEEEE
Confidence 88774 578899999998888877654 3569999996 677666543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.31 E-value=0.00017 Score=74.38 Aligned_cols=222 Identities=9% Similarity=0.087 Sum_probs=145.0
Q ss_pred EEEEeccCCCEEEEEe--CCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEec
Q 001160 844 ACIALSKNDSYVMSAS--GGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLK 921 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~ 921 (1134)
....|++....|.-.+ .++|.-||.++++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3466777655555555 689999999987654 332 345788999998 7877764 454 58899999887543322
Q ss_pred --C--cccceEEEEEecCCCEEEEEcC----CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-
Q 001160 922 --G--HQNRITGLAFSPTLNALVSSGA----DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV- 992 (1134)
Q Consensus 922 --~--h~~~i~~l~~s~d~~~l~s~~~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~- 992 (1134)
. ....+..+.+.|+|++.++... .+.-.+|.+..++... ..... .....++|+++++.+..+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eeecc-------CCcceeeecCCCceEEEee
Confidence 1 1235788999999998776542 2345667766654221 11111 235789999999987774
Q ss_pred -ECCeEEEEeCCCcc------eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCcceeeecCCcccccccc
Q 001160 993 -HESQISVYDSKLEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFRCRIGPSAYIPTYA 1065 (1134)
Q Consensus 993 -~d~~v~vwd~~~~~------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1065 (1134)
..+.|..|+++... ...+....+-.+....+++..+|.+.++.-..+.|..|| .+|+.+..+....
T Consensus 167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~------ 239 (295)
T d2ghsa1 167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG------ 239 (295)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC------
T ss_pred cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC------
Confidence 46788888873221 111111122245678999999999777766788899999 4688888886431
Q ss_pred cCCCCccEEEeecCCCCC-EEEEEeC
Q 001160 1066 VSNTAHPLVIAPHPSEPN-QIALGMS 1090 (1134)
Q Consensus 1066 ~~~~~~~~~~~~~~~d~~-~l~s~~~ 1090 (1134)
..+++++|-..|.+ +++|...
T Consensus 240 ----~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEEEBC
T ss_pred ----CceEEEEEeCCCCCEEEEEECC
Confidence 45778999643544 4455444
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.22 E-value=5.8e-05 Score=77.79 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=123.3
Q ss_pred eEeeCCCCCCccccCccccceEEEEecCCCCeeEEEEecCCCeEEEEEeCCC-----cEEEEEccCccccccccceeecc
Q 001160 318 VSFAGVAHTPNVYSQDDLTKTVVRTLNQGSNVMSMDFHPQQQTILLVGTNVG-----DISLWEVGSRERLAHKPFKVWDI 392 (1134)
Q Consensus 318 v~~s~~g~~~~~~~~~~~~~~~~~~l~h~~~V~~v~~spdg~~llasg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 392 (1134)
|+|..+| .+|..+...++..+...+.+.+...+|||||++|+++...++ .|.+++..+++...-..
T Consensus 15 v~f~~~~---dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~------ 85 (281)
T d1k32a2 15 IIFVCCD---DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY------ 85 (281)
T ss_dssp EEEEETT---EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC------
T ss_pred EEEEeCC---cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee------
Confidence 4454444 256666666776666667788999999999998776654333 47777777776432100
Q ss_pred ccccccccccccccCCcCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCC
Q 001160 393 SAASMPLQNALLNDAAISVNRCVWGPDGLMLGVAFSK------HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNK 466 (1134)
Q Consensus 393 ~~~~~~~~~~~l~~h~~~V~~i~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~ 466 (1134)
...............+|+|||+.|+..... ..+...+..++... ..+...... .+.+++.
T Consensus 86 -------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~ 151 (281)
T d1k32a2 86 -------FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATH-ILFADGR 151 (281)
T ss_dssp -------CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSE-EEEETTE
T ss_pred -------cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCccce-eeecCCC
Confidence 000011233456788999999999886432 23555555543221 122333333 4445555
Q ss_pred cEEEEEEcCCC-----------cEEEEECCCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecC--CeEEEEEccCCCc
Q 001160 467 QLCIVTCGDDK-----------MIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAID--GKIKAWLYDYLGS 533 (1134)
Q Consensus 467 ~~~l~sg~~d~-----------~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~ 533 (1134)
. .++....+. .........+...... .+........+.+ + ..+.....+ ..|.++|++....
T Consensus 152 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~d~~g~~~ 226 (281)
T d1k32a2 152 R-VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDL 226 (281)
T ss_dssp E-EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSC
T ss_pred e-EEEeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeec--c-ccceecccccccceEEEeCCCCce
Confidence 3 333332211 1122222222222222 2333334444433 2 233333333 3567777776655
Q ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE
Q 001160 534 RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT 582 (1134)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 582 (1134)
.......... ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 227 ~~lt~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 227 RKHTSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp EECCCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred EEeecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 4432222223 346899999988754 45699999988876543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.13 E-value=0.0002 Score=74.32 Aligned_cols=232 Identities=11% Similarity=0.103 Sum_probs=140.1
Q ss_pred EEEecc---CCCEEEEEe--CCeEEEEECCCCeEEEEecC-CCCceEEEEEcCC-CCcEEEEEeCC--------------
Q 001160 845 CIALSK---NDSYVMSAS--GGKVSLFNMMTFKVMTMFMS-PPPAATFLAFHPQ-DNNIIAIGMED-------------- 903 (1134)
Q Consensus 845 ~~~~s~---dg~~la~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~-~~~~lasg~~d-------------- 903 (1134)
.+.+.. ||+++.+.. +++|.+.|+++.++.+.... ....+..+...++ ...+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455544 899999998 78999999999998765543 2345666666541 44567666553
Q ss_pred ----CcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCC---------------cEEEEeC-----------
Q 001160 904 ----SSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADA---------------QLCMWSI----------- 953 (1134)
Q Consensus 904 ----g~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~---------------~i~iWd~----------- 953 (1134)
+.+.+.|..+.+....... .+....+++++||+++++.+.+. .+.+++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2367789988887766552 23466899999999998876431 1333333
Q ss_pred ------------CCcccc-cceeeecCCCCCCCCcCceEEEECCCCcEEEEEE--CCeEEEEeC-CCcce--------ec
Q 001160 954 ------------DKWEKL-KSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVVH--ESQISVYDS-KLECS--------RS 1009 (1134)
Q Consensus 954 ------------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~~--d~~v~vwd~-~~~~~--------~~ 1009 (1134)
...... -...+... .....+.++|||+++++++ +.++.|+|+ +.... ..
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVp-------KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred cEEeCCceeecccccCCcceeEEEecC-------CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 211000 00011111 2356889999999999964 789999998 21111 01
Q ss_pred cCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCc----------ceeeecCCcccccccccCCCCccEEEeecC
Q 001160 1010 WSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETL----------RFRCRIGPSAYIPTYAVSNTAHPLVIAPHP 1079 (1134)
Q Consensus 1010 ~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1134)
........-.-..-+|+.+|.-..+---|..|.-|++... ..+.++..| |.+.+ ...+++-...|
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~gh----~~~~~g~t~~~ 395 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGH----LKTVMGETLDA 395 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEE----EEETTTTSTTC
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-cCCCC----CccCcCCcCCC
Confidence 1111112344566788888865555668999999998643 334444433 22222 11111122345
Q ss_pred CCCCEEEEEeC
Q 001160 1080 SEPNQIALGMS 1090 (1134)
Q Consensus 1080 ~d~~~l~s~~~ 1090 (1134)
||++|++.+.
T Consensus 396 -dgk~l~~~nk 405 (459)
T d1fwxa2 396 -TNDWLVCLSK 405 (459)
T ss_dssp -CSSEEEEEES
T ss_pred -CCCEEEEecc
Confidence 8899998873
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.12 E-value=0.0053 Score=63.44 Aligned_cols=164 Identities=11% Similarity=0.078 Sum_probs=98.9
Q ss_pred EEEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeeccCCc-------------cEEEEEecCCeEEEEEccCCCce
Q 001160 468 LCIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHHKESI-------------QFIFSTAIDGKIKAWLYDYLGSR 534 (1134)
Q Consensus 468 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-------------~~l~s~~~d~~i~~wd~~~~~~~ 534 (1134)
..+.||+..|.|+|+-+.+++.+..+.-....-. --|-.+... .+|.. ..+.+..|
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~-~G~G~~~es~~il~~~~~~~t~~~l~~--~g~~~~~~-------- 82 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAA--NGKRIHDN-------- 82 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCC----------------CCC--------
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCC-cccCcchhHHHHhhcccChhhhhhhhc--cCcccccC--------
Confidence 3678999999999999999998887652110000 000000000 01110 00111111
Q ss_pred eEecCCCCcEEEEEECC---CCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeC--CCCEEEEEeCC
Q 001160 535 VDYDAPGNWCTMMAYSA---DGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDT--TRNRFLAAGDE 609 (1134)
Q Consensus 535 ~~~~~~~~~v~~~~~s~---~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 609 (1134)
+..+- ..+++.. ||+++++... .+.+|.+.|+++.+..+.........+..++..+ +-.++++++.+
T Consensus 83 ----GD~HH-P~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~ 154 (459)
T d1fwxa2 83 ----GDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGED 154 (459)
T ss_dssp ----CCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECS
T ss_pred ----CCcCC-CcccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCcc
Confidence 01111 1445543 8999998752 5788999999999987655443333566666654 45677776653
Q ss_pred C------------------eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCC
Q 001160 610 F------------------QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSD 653 (1134)
Q Consensus 610 g------------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 653 (1134)
. .+.++|..+.+....+...+ ....+.++++|+++++.+.+
T Consensus 155 ~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 155 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp CEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred ccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 2 36788999998887776543 35679999999999987753
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.64 E-value=0.0048 Score=66.20 Aligned_cols=283 Identities=8% Similarity=-0.028 Sum_probs=144.9
Q ss_pred CeeEEEEecCCCeEEEEEeCCC-----------cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEE
Q 001160 348 NVMSMDFHPQQQTILLVGTNVG-----------DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVW 416 (1134)
Q Consensus 348 ~V~~v~~spdg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~ 416 (1134)
++.......+|+ +++.|+.+. .+.+||..++....... ....|.......++
T Consensus 21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~ 83 (387)
T d1k3ia3 21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISM 83 (387)
T ss_dssp CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEE
T ss_pred ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEE
Confidence 444455556776 666666421 37789998876432100 01234344556789
Q ss_pred cCCCCEEEEEeCC-CeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCC------CcEEEEECCCCee
Q 001160 417 GPDGLMLGVAFSK-HIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDD------KMIKVWDVVAGRK 489 (1134)
Q Consensus 417 spdg~~las~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d------~~i~iwd~~~~~~ 489 (1134)
.+||++++.|+.+ ..+.+||..+..-.. ...+.. ...-.+++..+||+ +++.|+.+ ..+.+||+.+.+.
T Consensus 84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence 9999999998765 589999998754321 111111 11234567778898 67777643 3689999988764
Q ss_pred eEEec---------CCCCCe----EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC--C-------CCcEEEE
Q 001160 490 QYTFE---------GHEAPV----YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA--P-------GNWCTMM 547 (1134)
Q Consensus 490 ~~~~~---------~h~~~v----~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~-------~~~v~~~ 547 (1134)
...-. .+...+ ....+. ..+|..++.+..++.+.+++..+......... . ...-..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (387)
T d1k3ia3 160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 238 (387)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence 32110 000000 000111 12346666666667777776655433221100 0 0011122
Q ss_pred EECCCCCEEEEEeeCCCC----CCcEEEEeCCC---CeeEEE-ecC-ccCcceEEEEEeCCCCEEEEEeCC---------
Q 001160 548 AYSADGTRLFSCGTSKEG----ESHLVEWNESE---GAIKRT-YSG-FRKRSLGVVQFDTTRNRFLAAGDE--------- 609 (1134)
Q Consensus 548 ~~s~~~~~l~~~~~~~~~----~~~i~~wd~~~---~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------- 609 (1134)
.-..+++.++.++..... .....+.+... ...... ... .....-.+....++++.++.|+.+
T Consensus 239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~ 318 (387)
T d1k3ia3 239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 318 (387)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence 223466677776642211 12233333321 111111 111 011122345566899998888743
Q ss_pred --CeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC
Q 001160 610 --FQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS 652 (1134)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 652 (1134)
..+.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus 319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887754332211111101123446789999999884
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.62 E-value=0.0096 Score=63.71 Aligned_cols=260 Identities=12% Similarity=0.060 Sum_probs=133.6
Q ss_pred ccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe-C-CeEEEEECCCCeEEEEecCCC-CceEEEEEcCCCCc
Q 001160 819 QLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS-G-GKVSLFNMMTFKVMTMFMSPP-PAATFLAFHPQDNN 895 (1134)
Q Consensus 819 ~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s-d-g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~ 895 (1134)
.+||+.+++..........| .......++.+||++++.|+ + ..+.+||..+..-...-.... ..-.+++..+ |++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR 132 (387)
T ss_dssp EEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred EEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence 45666666543221111112 33345678889999999987 3 679999998765533211111 1234567777 889
Q ss_pred EEEEEeCC------CcEEEEEcCCceEEEE--ec-------Ccc-----cceEEEEEecCCCEEEEEcCCCcEEEEeCCC
Q 001160 896 IIAIGMED------SSVQIYNVRVDEVKTK--LK-------GHQ-----NRITGLAFSPTLNALVSSGADAQLCMWSIDK 955 (1134)
Q Consensus 896 ~lasg~~d------g~i~iwd~~~~~~~~~--l~-------~h~-----~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~ 955 (1134)
+++.|+.+ ..+.+||..+.+-... .. .+. +.-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 99888753 3689999887642211 10 010 0111233456788888888777777777777
Q ss_pred cccccceeeecCCCCCCCCcCceEEEE-CCCCcEEEEEE-C--------CeEEEEeC---CCc--ceeccCCCCCCCCCe
Q 001160 956 WEKLKSRFIQAPAGRQSPLVGETKVQF-HNDQTHLLVVH-E--------SQISVYDS---KLE--CSRSWSPKDALPAPI 1020 (1134)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~v~~~~f-spdg~~l~~~~-d--------~~v~vwd~---~~~--~~~~~~~~~~h~~~v 1020 (1134)
.....................-..+.+ ..+++.++.+. . ....+.+. ... ....... ..+...-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~ 291 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG-LYFARTF 291 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC-CSSCCBS
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccc-ccccccc
Confidence 553222111111111110011123333 35677777642 1 12333333 111 1111111 1112223
Q ss_pred EEEEEccCCCEEEEEecCC-----------cEEEEeCCCcceeeecCCcccccccccCCCCccEEEeecCCCCCEEEEEe
Q 001160 1021 SSAIYSCDGLLVYAGFCDG-----------AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGM 1089 (1134)
Q Consensus 1021 ~~v~~s~dg~~l~~~~~dg-----------~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~ 1089 (1134)
.+....+||++++.|+.+. ++.+||..+.+-.. +. ....+.. .+. +....+ ||++++.|+
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~-~~~~~R~-----~Hs-~a~l~~-dG~v~v~GG 362 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIVRV-----YHS-ISLLLP-DGRVFNGGG 362 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSCCC-----TTE-EEEECT-TSCEEEEEC
T ss_pred ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CC-CCCCccc-----ceE-EEEECC-CCEEEEEeC
Confidence 3556678999999988532 47889988765321 11 1111111 111 222345 889999988
Q ss_pred C
Q 001160 1090 S 1090 (1134)
Q Consensus 1090 ~ 1090 (1134)
.
T Consensus 363 ~ 363 (387)
T d1k3ia3 363 G 363 (387)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.61 E-value=0.018 Score=64.72 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=113.1
Q ss_pred EEEEc-CCCcEEEEECC-CCeeeEEecCCCC----Ce-------EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeE
Q 001160 470 IVTCG-DDKMIKVWDVV-AGRKQYTFEGHEA----PV-------YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVD 536 (1134)
Q Consensus 470 l~sg~-~d~~i~iwd~~-~~~~~~~~~~h~~----~v-------~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 536 (1134)
++.++ .++.|...|.. +|+.+-++..... .. ..+++. +..++.++.|+.+.-.|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 44444 46788888874 6988877642110 00 122332 15788889999999999999887765
Q ss_pred ecCCCC----cEEEEEECCCCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCccC----------------------
Q 001160 537 YDAPGN----WCTMMAYSADGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFRK---------------------- 588 (1134)
Q Consensus 537 ~~~~~~----~v~~~~~s~~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~~---------------------- 588 (1134)
...... .+++.-.-.++.. +.+... ....+.|+-+|..+|+.+-++.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~~v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCCeE-EEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 543211 1111111123333 333321 11366799999999999887543210
Q ss_pred --------------cce-EEEEEeCCCCEEEEEeC----------------CCeEEEEECCCCeeEEEEeCCCCC-----
Q 001160 589 --------------RSL-GVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGL----- 632 (1134)
Q Consensus 589 --------------~~v-~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~----- 632 (1134)
..+ ...++.+....++.+.. ...+...|.++++.+-.++...+.
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 011 23566777777666543 356888899999998887743321
Q ss_pred --CCcceEEEccCCC---EEEEEeCCCcEEEEECCCch
Q 001160 633 --PASPRLRFNKEGS---LLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 633 --~~v~~~~~s~d~~---~l~~~~~dg~i~iw~~~~~~ 665 (1134)
..........+++ .++.++.+|.+.++|..+++
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 1111122233443 46778889999999999994
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.58 E-value=0.017 Score=65.20 Aligned_cols=196 Identities=11% Similarity=0.047 Sum_probs=114.7
Q ss_pred EEEEEcCCCcEEEEEC-CCCeeeEEecCCCC----------Ce-EEEEeecc--CCccEEEEEecCCeEEEEEccCCCce
Q 001160 469 CIVTCGDDKMIKVWDV-VAGRKQYTFEGHEA----------PV-YSVCPHHK--ESIQFIFSTAIDGKIKAWLYDYLGSR 534 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~-~~~~~~~~~~~h~~----------~v-~~i~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~ 534 (1134)
++++++.++.|...|. .+|+.+-++..... .+ ..+++.+. ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 3344455667777776 57888776642110 01 23343322 12347888999999999999999888
Q ss_pred eEecCCCCcE-EEEEECC--CCCEEEEEeeC--CCCCCcEEEEeCCCCeeEEEecCcc----------------------
Q 001160 535 VDYDAPGNWC-TMMAYSA--DGTRLFSCGTS--KEGESHLVEWNESEGAIKRTYSGFR---------------------- 587 (1134)
Q Consensus 535 ~~~~~~~~~v-~~~~~s~--~~~~l~~~~~~--~~~~~~i~~wd~~~~~~~~~~~~~~---------------------- 587 (1134)
..+....... ..+.-+| -+..++.+... ....+.|+-+|..+|+.+-++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~ 224 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred ccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence 7664321100 0111111 13344444321 1235789999999999987764321
Q ss_pred ---------------CcceEEEEEeCCCCEEEEEeC----------------CCeEEEEECCCCeeEEEEeCCCCCC---
Q 001160 588 ---------------KRSLGVVQFDTTRNRFLAAGD----------------EFQIKFWDMDNMNMLTTVDADGGLP--- 633 (1134)
Q Consensus 588 ---------------~~~v~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~--- 633 (1134)
...-..+++.+....++.+.. ...|...|+++++.+-.++...+..
T Consensus 225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~ 304 (596)
T d1w6sa_ 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY 304 (596)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence 001223566777777766532 2457888999999888776433211
Q ss_pred ----CcceEEE-ccCCC---EEEEEeCCCcEEEEECCCc
Q 001160 634 ----ASPRLRF-NKEGS---LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 634 ----~v~~~~~-s~d~~---~l~~~~~dg~i~iw~~~~~ 664 (1134)
....+.. ..+|+ .++....+|.+.++|..+|
T Consensus 305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG 343 (596)
T d1w6sa_ 305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (596)
T ss_dssp CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred ccccceeeeeccccccccccceeccccccceeeecCCCC
Confidence 1111111 23443 5777888999999999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.58 E-value=0.042 Score=53.51 Aligned_cols=255 Identities=8% Similarity=0.080 Sum_probs=146.8
Q ss_pred CCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCC
Q 001160 566 ESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGS 645 (1134)
Q Consensus 566 ~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 645 (1134)
..++.+.|+..+..+.+-.... .+.-++|..+.++.-+ ..+++++|+++.+.++...... .|.--.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC-C
Confidence 4568899998765433322222 2345789888888755 5689999999999999988764 3555556544 4
Q ss_pred EEEEEeCCCcEEEEECCCchhhhhhhcCCcccccCCCCCCCCCCCccccccCCCcccccccCCCCCCCCCCCCCcccCcc
Q 001160 646 LLAVTTSDNGIKILANSDGVRLLRMLEGRAMDKNRCPSEPISSKPLTINALGPASNVSAAIAPTLERPDRGPPAVSISSL 725 (1134)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1134)
.|+..+.. .|+-|+++......+.+..|...
T Consensus 115 ~L~lVT~t-aVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------ 145 (327)
T d1utca2 115 TVALVTDN-AVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 145 (327)
T ss_dssp EEEEECSS-EEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred EEEEEcCC-ceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence 56666544 89999985442233333222110
Q ss_pred CCCCcccccccccccccccCccceeccCCCCCccceeEeecCCcccccceEEEEEecCCcceEEeec-------cCeeEE
Q 001160 726 GTIDGSRLVDVKPRVAEDVDKIKSWRIPDISDPSQIKALRLPDSIAASKVVRLIYTNSGLSLLALAS-------NAVHKL 798 (1134)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~v 798 (1134)
....|.....+++.++++..|- .|.+.+
T Consensus 146 ---------------------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQL 180 (327)
T d1utca2 146 ---------------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 180 (327)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEE
Confidence 1233444555555555443321 267778
Q ss_pred eeccccc-CCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCCEEEEEe----CCeEEEEECCCCe-
Q 001160 799 WKWQRTE-RNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDSYVMSAS----GGKVSLFNMMTFK- 872 (1134)
Q Consensus 799 w~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~~la~~s----dg~i~vwd~~~~~- 872 (1134)
|..+... +..+|.+..-.++ .+.+..+ ... .++.+. .+++.|.++....
T Consensus 181 YS~er~~sQ~ieGhaa~F~~~-------------~~~g~~~-~~~-----------lf~fa~r~~~~~kLhIiEig~~~~ 235 (327)
T d1utca2 181 YSVDRKVSQPIEGHAASFAQF-------------KMEGNAE-EST-----------LFCFAVRGQAGGKLHIIEVGTPPT 235 (327)
T ss_dssp EETTTTEEEEECCSEEEEEEE-------------CCTTCSS-CEE-----------EEEEEEEETTEEEEEEEECSCCCT
T ss_pred EEeccCcCccccceeeeeEEE-------------EcCCCCC-Cce-----------EEEEEECCCCCcEEEEEEcCCCcc
Confidence 7765321 1112211111100 0111111 111 222222 3689999886521
Q ss_pred -------EEEEec-C---CCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEE
Q 001160 873 -------VMTMFM-S---PPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVS 941 (1134)
Q Consensus 873 -------~~~~~~-~---~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s 941 (1134)
....+. . ..+--.++..|+ .-.++..-+.-|.|++||+.++.++..-+--.+.|..-+-..+..=++.
T Consensus 236 g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~ 314 (327)
T d1utca2 236 GNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIG 314 (327)
T ss_dssp TCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEE
Confidence 111221 1 123356888888 6778888999999999999999998876666666765555555455666
Q ss_pred EcCCCcEE
Q 001160 942 SGADAQLC 949 (1134)
Q Consensus 942 ~~~D~~i~ 949 (1134)
...+|.|.
T Consensus 315 VNr~GqVl 322 (327)
T d1utca2 315 VNRKGQVL 322 (327)
T ss_dssp EETTSEEE
T ss_pred ECCCCeEE
Confidence 66676654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.56 E-value=0.048 Score=53.98 Aligned_cols=234 Identities=9% Similarity=-0.033 Sum_probs=144.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCc--cceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEecCCCC
Q 001160 421 LMLGVAFSKHIVHLYTYNPTGE--LRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTFEGHEA 498 (1134)
Q Consensus 421 ~~las~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~ 498 (1134)
.+|+.+. .+.|+-.+++.... ......+..+...+..++|...++. +..+-..++.|+..++..+.....+.....
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 3444443 34677777765432 1122233445556888999988774 344456678899888876555444444445
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.+.++++....+ .+.++-...+.|.+.+++.................+++.|...+++....+. +...|..-++....
T Consensus 80 ~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 80 SPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (263)
T ss_dssp CEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred cccEEEEeccCC-eEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCCC
Confidence 688899875442 4445556678999999987665554444456788999999888887553211 12335545554333
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEE-EEeCCCcE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLA-VTTSDNGI 656 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i 656 (1134)
.. .+....-.....+++.+.++.|+.+ ...+.|...++........+.... ....+++. +..|. +-...+.|
T Consensus 158 ~~-~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~--~~~lYwtd~~~~~I 231 (263)
T d1npea_ 158 RR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY--GKNLYYTDWKTNSV 231 (263)
T ss_dssp CE-EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE--TTEEEEEETTTTEE
T ss_pred ce-eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE--CCEEEEEECCCCEE
Confidence 22 2222222256789999888888665 467889999997665544444322 23567765 34454 44456788
Q ss_pred EEEECCCc
Q 001160 657 KILANSDG 664 (1134)
Q Consensus 657 ~iw~~~~~ 664 (1134)
...|..++
T Consensus 232 ~~~~~~~g 239 (263)
T d1npea_ 232 IAMDLAIS 239 (263)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 88888776
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.55 E-value=0.012 Score=66.45 Aligned_cols=193 Identities=11% Similarity=0.073 Sum_probs=112.3
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC----------CCe-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE----------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~----------~~v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.++.++.++.|.-+|.++|+.+-++.... ..+ ..+.+. . ..++.++.|+.+.-.|..+++.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~--~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K--GKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T--TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--C--CcEEEEecccceeeeccccccceecc
Confidence 46677788999999999999988764211 011 112221 1 46778888999998899888887654
Q ss_pred cCCCCcE--EEEEECC--CCCEEEEEee--CCCCCCcEEEEeCCCCeeEEEecCccC-----------------------
Q 001160 538 DAPGNWC--TMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK----------------------- 588 (1134)
Q Consensus 538 ~~~~~~v--~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------- 588 (1134)
....... ..+.-.| -+..+++++. .....+.|+-+|.++|+.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence 4321110 0111111 1234444432 122356799999999999877643210
Q ss_pred -------cce-EEEEEeCCCCEEEEEeC-------------------CCeEEEEECCCCeeEEEEeCCCCC-------CC
Q 001160 589 -------RSL-GVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGL-------PA 634 (1134)
Q Consensus 589 -------~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~ 634 (1134)
..+ ...++.++...++.+.. ...|...|.++++..-..+...+. ..
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence 011 23556676666654321 125677788888877666533221 11
Q ss_pred cceEEEccCC---CEEEEEeCCCcEEEEECCCch
Q 001160 635 SPRLRFNKEG---SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 635 v~~~~~s~d~---~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
........++ ..++.++.+|.+.++|..+++
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe 348 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eeecceecCCCceeeeeeccccceeEEecccccc
Confidence 1112222233 356778889999999999993
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.50 E-value=0.053 Score=58.47 Aligned_cols=248 Identities=10% Similarity=0.033 Sum_probs=137.2
Q ss_pred eeEEEEecCCCeEEEEEeCCC----cEEEEEccCccccccccceeeccccccccccccccccCCcCeEEEEEcCCCCEEE
Q 001160 349 VMSMDFHPQQQTILLVGTNVG----DISLWEVGSRERLAHKPFKVWDISAASMPLQNALLNDAAISVNRCVWGPDGLMLG 424 (1134)
Q Consensus 349 V~~v~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~i~~spdg~~la 424 (1134)
+..+++||||++++.+-+.+| .|++.|+.+++.+.. . + .......++|++|++.|+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i--~~~~~~~~~W~~D~~~~~ 186 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHDGKGMF 186 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTTSSEEE
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------c--ccccccceEEcCCCCEEE
Confidence 446678999997666655555 799999999986532 0 1 111235789999999887
Q ss_pred EEeCC----------------CeEEEEEcCCCCccceeeEEeccc--CCeeEEEEecCCCcEEEEEEc-CCCc--EEEEE
Q 001160 425 VAFSK----------------HIVHLYTYNPTGELRQHLEIDAHV--GGVNDIAFAHPNKQLCIVTCG-DDKM--IKVWD 483 (1134)
Q Consensus 425 s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~d~~~~~l~sg~-~d~~--i~iwd 483 (1134)
....+ ..|..|.+.+...-. ...+.... ..+..+..+.+++.+.+.+.. .+.. +.+.|
T Consensus 187 Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d 265 (430)
T d1qfma1 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (430)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEee
Confidence 65432 257788887754322 11333333 346677788999853332332 2333 34445
Q ss_pred CCCCe--------eeEEecCCCCCeEEEEeeccCCccEEEEEe---cCCeEEEEEccCCCc---eeEecCCCCcEEEEEE
Q 001160 484 VVAGR--------KQYTFEGHEAPVYSVCPHHKESIQFIFSTA---IDGKIKAWLYDYLGS---RVDYDAPGNWCTMMAY 549 (1134)
Q Consensus 484 ~~~~~--------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~ 549 (1134)
+.... ....+......+..+.. .+ +.+++... .++.|...++..... ...+..+...+..-.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~ 342 (430)
T d1qfma1 266 LQQESNGITGILKWVKLIDNFEGEYDYVTN--EG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA 342 (430)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE
T ss_pred CCCcccccccccceeEeecccccceEEEec--CC-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE
Confidence 43321 11222222333332221 11 13333332 346677777765543 2233334444544444
Q ss_pred CCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE--e--CCCeEEEEECCCCee
Q 001160 550 SADGTRLFSCGTSKEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA--G--DEFQIKFWDMDNMNM 622 (1134)
Q Consensus 550 s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~--~dg~i~iwd~~~~~~ 622 (1134)
+..+.+|+.... .++...|++++..++.....+..... .+..+...++...+... | .-.+++-+|+.+++.
T Consensus 343 ~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 343 CVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCCc-eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 455556665442 23567799999998877655443333 56555555555544332 2 447889999988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=0.055 Score=52.65 Aligned_cols=227 Identities=17% Similarity=0.166 Sum_probs=145.9
Q ss_pred EEEEeccCCCEEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCc-eEEEEecC
Q 001160 844 ACIALSKNDSYVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVD-EVKTKLKG 922 (1134)
Q Consensus 844 ~~~~~s~dg~~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~-~~~~~l~~ 922 (1134)
.+.-.+|..+.||.-+..++.|||+++.+.++.+.- ...|.--.|-. .+.|+..+ +..|+-|+++.. .+.+.+.-
T Consensus 66 dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR 141 (327)
T d1utca2 66 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 141 (327)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhh
Confidence 456678999999988888999999999998888773 44676667764 45666664 458999999543 46666765
Q ss_pred ccc----ceEEEEEecCCCEEEEEc---C----CCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC----c
Q 001160 923 HQN----RITGLAFSPTLNALVSSG---A----DAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ----T 987 (1134)
Q Consensus 923 h~~----~i~~l~~s~d~~~l~s~~---~----D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg----~ 987 (1134)
|.. .|..-..++|.++++..| . .|.+.+|..+.+. -+..+||.. .-..+.-+| .
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 210 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 210 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Cccccceee-----eeEEEEcCCCCCCc
Confidence 543 577788889999887654 2 3668899888754 233445431 112222222 2
Q ss_pred EEEE-EE----CCeEEEEeC-C---Ccc------eeccCCCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEeCCCccee
Q 001160 988 HLLV-VH----ESQISVYDS-K---LEC------SRSWSPKDALPAPISSAIYSCDGLLVYAGFCDGAIGVFDAETLRFR 1052 (1134)
Q Consensus 988 ~l~~-~~----d~~v~vwd~-~---~~~------~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg~I~vwd~~~~~~~ 1052 (1134)
.|++ +. .+++.+.++ . +.. ...+.+.+.-.+--.++..|+.-..+...+.-|.|+++|++||.++
T Consensus 211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 2333 32 257888887 2 111 1122233334556678889998888988999999999999999999
Q ss_pred eecCCcccccccccCCCCccEEEeecCCCCCEEEEEeCCCcEEE
Q 001160 1053 CRIGPSAYIPTYAVSNTAHPLVIAPHPSEPNQIALGMSDGAVHV 1096 (1134)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~s~~~Dg~v~v 1096 (1134)
..-+-. . ..+...+.+. +..=+++...+|.|.-
T Consensus 291 ~~nRIs---------~-~~iF~~a~~~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 291 YMNRIS---------G-ETIFVTAPHE-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEECC---------S-SCEEEEEEET-TTTEEEEEETTSEEEE
T ss_pred EEeecC---------C-CceEEeccCC-CCceEEEECCCCeEEE
Confidence 765422 1 2222222233 2345555667887643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.069 Score=52.81 Aligned_cols=224 Identities=10% Similarity=0.011 Sum_probs=140.4
Q ss_pred cCCcCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 406 DAAISVNRCVWGPDGLMLGVA-FSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 406 ~h~~~V~~i~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
.+...+..++|.+..+.|.-. ..++.|...+++++.... .+......+..+++..-+.. +..+-...+.|.+.++
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 345568889999887777766 456788888887654322 22233356889999876764 3345566789999998
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEEecCCe--EEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeC
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFSTAIDGK--IKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTS 562 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 562 (1134)
........+.........++++|.. |.++.+-...+. |..-+++...........-....++++.+.++.|+.+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 6554333333334678899998765 233334332233 444455544444444334456789999998888877642
Q ss_pred CCCCCcEEEEeCCCCeeEEEecCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEc
Q 001160 563 KEGESHLVEWNESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFN 641 (1134)
Q Consensus 563 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 641 (1134)
+.+.|...++........+.+... ...+++. +.+|+.. ...+.|...|..+++.+..+..... .....+++.
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~~--P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~ 259 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQY--PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIA 259 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCCS--EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCCC--cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEe
Confidence 467798889876554444444332 3467665 4455544 4678899999999988776643332 234555554
Q ss_pred c
Q 001160 642 K 642 (1134)
Q Consensus 642 ~ 642 (1134)
+
T Consensus 260 ~ 260 (263)
T d1npea_ 260 L 260 (263)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.39 E-value=0.08 Score=52.44 Aligned_cols=231 Identities=10% Similarity=0.003 Sum_probs=140.6
Q ss_pred EEEEeCCCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEECCCCe----eeEEecCCCC
Q 001160 423 LGVAFSKHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGR----KQYTFEGHEA 498 (1134)
Q Consensus 423 las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~h~~ 498 (1134)
|+.+.. ..|+..++++.+.. .+......+.+++|.+..+. +..+-..++.|.-.++.... ....+.....
T Consensus 4 Ll~s~~-~~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEECB-SSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 444433 34888888875432 23334556789999988874 33344456677766654321 1122333335
Q ss_pred CeEEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCe
Q 001160 499 PVYSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGA 578 (1134)
Q Consensus 499 ~v~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~ 578 (1134)
.+.++++.+... .+.++-...+.|.+.+++.................+++.|...++..... ...+.|...++....
T Consensus 78 ~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dGs~ 154 (266)
T d1ijqa1 78 APDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNGVD 154 (266)
T ss_dssp CCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCC
T ss_pred CcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCCCc
Confidence 567788866542 45556667789999999877666666666667889999997777775532 124457777765443
Q ss_pred eEEEecCccCcceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeCCCcEE
Q 001160 579 IKRTYSGFRKRSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTSDNGIK 657 (1134)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 657 (1134)
........-. ....+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++.|.
T Consensus 155 ~~~l~~~~~~-~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 155 IYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (266)
T ss_dssp EEEEECSSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred eecccccccc-eeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence 3332222222 56789999988877766 46789999999765544444443333344566665 233334444567887
Q ss_pred EEECCCc
Q 001160 658 ILANSDG 664 (1134)
Q Consensus 658 iw~~~~~ 664 (1134)
..+..++
T Consensus 233 ~~~~~~g 239 (266)
T d1ijqa1 233 SANRLTG 239 (266)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 7777666
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.35 E-value=0.049 Score=60.98 Aligned_cols=81 Identities=7% Similarity=-0.002 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEE
Q 001160 903 DSSVQIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQF 982 (1134)
Q Consensus 903 dg~i~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~f 982 (1134)
.|.|.-+|+.+|+.+.+... ..+..+=..+-.+.++++++.|+.++-+|.++|+.+-...+.. +.. ..-+.|
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~-~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~--~~~-----a~P~ty 514 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS--GGI-----GSPMTY 514 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS--CCC-----SCCEEE
T ss_pred cccEEEeccCCCceeeEcCC-CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC--Cce-----ecceEE
Confidence 36889999999998877542 1111111122346678889999999999999999765433322 111 233666
Q ss_pred CCCCcEEEE
Q 001160 983 HNDQTHLLV 991 (1134)
Q Consensus 983 spdg~~l~~ 991 (1134)
..||+..++
T Consensus 515 ~~dGkqYi~ 523 (571)
T d2ad6a1 515 SFKGKQYIG 523 (571)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 778875443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.32 E-value=0.022 Score=63.83 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=52.7
Q ss_pred CeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecCcccce-EEEEEecCCC-E
Q 001160 861 GKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKGHQNRI-TGLAFSPTLN-A 938 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~i-~~l~~s~d~~-~ 938 (1134)
|.|.-||+.+++.+....... +...-.++- .+.++.+|+.||.++-+|..+|+.+.+++...... .-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 468889999999888765322 221112222 45677889999999999999999998876322211 1245556785 4
Q ss_pred EEEEc
Q 001160 939 LVSSG 943 (1134)
Q Consensus 939 l~s~~ 943 (1134)
|+...
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.29 E-value=0.18 Score=56.48 Aligned_cols=192 Identities=13% Similarity=0.048 Sum_probs=111.2
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCC--------CCe-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHE--------APV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~--------~~v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 539 (1134)
.|+.++.++.|.-.|..+|+.+-++.... ..+ ..+++. +..++.++.|+.+.-.|..+++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 46677788899999999999987764211 011 112221 25678889999999999998887654332
Q ss_pred CCC--------cEEEEEECCCCCEEEEEeeC---CCCCCcEEEEeCCCCeeEEEecCccC--------------------
Q 001160 540 PGN--------WCTMMAYSADGTRLFSCGTS---KEGESHLVEWNESEGAIKRTYSGFRK-------------------- 588 (1134)
Q Consensus 540 ~~~--------~v~~~~~s~~~~~l~~~~~~---~~~~~~i~~wd~~~~~~~~~~~~~~~-------------------- 588 (1134)
... ......--..+..++..+.. ....+.|.-+|.++|+.+-++.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 111 00011111123333333211 11245688899999988776543211
Q ss_pred -------------------c-ceEEEEEeCCCCEEEEEeC------------------------CCeEEEEECCCCeeEE
Q 001160 589 -------------------R-SLGVVQFDTTRNRFLAAGD------------------------EFQIKFWDMDNMNMLT 624 (1134)
Q Consensus 589 -------------------~-~v~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 624 (1134)
. ....+++.+....++.+.. ...+...|.++++..-
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0 1223667777777766431 2357778889999887
Q ss_pred EEeCCCCCCCcc-------eEEEc-cCCC---EEEEEeCCCcEEEEECCCc
Q 001160 625 TVDADGGLPASP-------RLRFN-KEGS---LLAVTTSDNGIKILANSDG 664 (1134)
Q Consensus 625 ~~~~~~~~~~v~-------~~~~s-~d~~---~l~~~~~dg~i~iw~~~~~ 664 (1134)
.++...+..... -+.+. .++. .++..+.++.+.++|..++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 776443311111 11111 2333 5666788999999999988
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00031 Score=62.21 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=67.7
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+||.+.||||+..|+..+|..|+++.-..+...+.+++++|..+....++.+++....+++ ++.+
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s 119 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS 119 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence 4444 9999999999999999999999999999877777778899999999999998888887776665 3444
Q ss_pred HHHHHHHHHh
Q 001160 140 RNIMLVELKK 149 (1134)
Q Consensus 140 r~~l~~~l~~ 149 (1134)
-..|+..|++
T Consensus 120 ~~lLl~~L~~ 129 (149)
T d2nxpa1 120 YQLLKRHLQE 129 (149)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5666666654
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.25 E-value=0.042 Score=61.49 Aligned_cols=193 Identities=10% Similarity=0.067 Sum_probs=114.7
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCC----------Ce-EEEEeeccCCccEEEEEecCCeEEEEEccCCCceeEe
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEA----------PV-YSVCPHHKESIQFIFSTAIDGKIKAWLYDYLGSRVDY 537 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~----------~v-~~i~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 537 (1134)
.|+.++.++.|.-.|.++|+.+-++..... .+ ..++. .+..++.+..|+.+.-.|..+++.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~l~Alda~tG~~~w~~ 143 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce----eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence 456667788999999999999887642111 00 01111 1257888899999999999988887765
Q ss_pred cCCCC-cEEEEEECC--CCCEEEEEee--CCCCCCcEEEEeCCCCeeEEEecCccC------------------------
Q 001160 538 DAPGN-WCTMMAYSA--DGTRLFSCGT--SKEGESHLVEWNESEGAIKRTYSGFRK------------------------ 588 (1134)
Q Consensus 538 ~~~~~-~v~~~~~s~--~~~~l~~~~~--~~~~~~~i~~wd~~~~~~~~~~~~~~~------------------------ 588 (1134)
..... ....+.-.| .+..++.+.. .....+.|.-+|.++|+.+-++..-..
T Consensus 144 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 43321 111111111 1223333322 112246799999999999887753210
Q ss_pred -----c-ceEEEEEeCCCCEEEEEeC-------------------CCeEEEEECCCCeeEEEEeCCCCCCC-------cc
Q 001160 589 -----R-SLGVVQFDTTRNRFLAAGD-------------------EFQIKFWDMDNMNMLTTVDADGGLPA-------SP 636 (1134)
Q Consensus 589 -----~-~v~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~-------v~ 636 (1134)
. .-...++.+....++.+.. ...|.-.|+++++..-.++...+... ..
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 0 1123567777777665321 24577789999998877764432111 11
Q ss_pred eEEEccCC---CEEEEEeCCCcEEEEECCCch
Q 001160 637 RLRFNKEG---SLLAVTTSDNGIKILANSDGV 665 (1134)
Q Consensus 637 ~~~~s~d~---~~l~~~~~dg~i~iw~~~~~~ 665 (1134)
-+....++ ..++.++.+|.+.++|..+++
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence 12222244 356778889999999999983
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.24 E-value=0.2 Score=56.09 Aligned_cols=160 Identities=10% Similarity=0.039 Sum_probs=98.1
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCe-EEEEeeccCCccEEEEEec------CCeEEEEEccCCCceeEecCCC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPV-YSVCPHHKESIQFIFSTAI------DGKIKAWLYDYLGSRVDYDAPG 541 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~ 541 (1134)
+++.++.|+.|.-.|.++|+.+..+....... ..+.-.|.--+..++.+.. .|.|+-+|..+++.+..+....
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~ 202 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence 58888999999999999999988774321100 0011001001145555543 4889999999999887653211
Q ss_pred -------------------------------------C-cEEEEEECCCCCEEEEEeeCCC------------CCCcEEE
Q 001160 542 -------------------------------------N-WCTMMAYSADGTRLFSCGTSKE------------GESHLVE 571 (1134)
Q Consensus 542 -------------------------------------~-~v~~~~~s~~~~~l~~~~~~~~------------~~~~i~~ 571 (1134)
. .-..+++.+....++.+..+.. -...|.-
T Consensus 203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivA 282 (596)
T d1w6sa_ 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (596)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccc
Confidence 0 1123455666666665542110 0345888
Q ss_pred EeCCCCeeEEEecCccCc--------ceEEEEE-eCCC---CEEEEEeCCCeEEEEECCCCeeEEEEeC
Q 001160 572 WNESEGAIKRTYSGFRKR--------SLGVVQF-DTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVDA 628 (1134)
Q Consensus 572 wd~~~~~~~~~~~~~~~~--------~v~~~~~-~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1134)
.|.++|+.+-.++..+.. ....+.. ..+| +.++.+..+|.++++|..+++++...+.
T Consensus 283 lD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~ 351 (596)
T d1w6sa_ 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (596)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccc
Confidence 999999998877643221 1111221 2344 3566788999999999999998876654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.16 E-value=0.17 Score=56.57 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=110.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceeeEE----eccc---CCe-eEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeEEe
Q 001160 422 MLGVAFSKHIVHLYTYNPTGELRQHLEI----DAHV---GGV-NDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQYTF 493 (1134)
Q Consensus 422 ~las~~~dg~i~iwd~~~~~~~~~~~~~----~~h~---~~v-~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 493 (1134)
.|.+++.++.|.-+|.++|+.+-....- ..+. ..+ ..+++. ++ .++.++.|+.+.-.|..+|+.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG---KVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CC---cEEEEecccceeeeccccccceecc
Confidence 4445566667777777777654321000 0000 011 123332 23 4677788999999999999988655
Q ss_pred cCC--C-CCeEEEEeeccCCccEEEEEe------cCCeEEEEEccCCCceeEecCCC-----------------------
Q 001160 494 EGH--E-APVYSVCPHHKESIQFIFSTA------IDGKIKAWLYDYLGSRVDYDAPG----------------------- 541 (1134)
Q Consensus 494 ~~h--~-~~v~~i~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~----------------------- 541 (1134)
... . ..+. +.-.|.--+..++.++ ..|.|+.+|..+++.+..+....
T Consensus 155 ~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 432 1 1111 1000000013455543 24689999999998887653211
Q ss_pred --------CcE-EEEEECCCCCEEEEEeeC---------------CCCCCcEEEEeCCCCeeEEEecCccCc--------
Q 001160 542 --------NWC-TMMAYSADGTRLFSCGTS---------------KEGESHLVEWNESEGAIKRTYSGFRKR-------- 589 (1134)
Q Consensus 542 --------~~v-~~~~~s~~~~~l~~~~~~---------------~~~~~~i~~wd~~~~~~~~~~~~~~~~-------- 589 (1134)
..+ ...++.++...++..... ......|.-.|.++++..-.++.....
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 011 124556666666543310 111235777888899887766543210
Q ss_pred ceEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeeEEEEe
Q 001160 590 SLGVVQFDTTR---NRFLAAGDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 590 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
.........++ ..++.++.+|.++++|..+++.+....
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~ 354 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eeeecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence 11222223333 346667899999999999999886654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.15 Score=50.43 Aligned_cols=214 Identities=8% Similarity=-0.058 Sum_probs=129.6
Q ss_pred CCcCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceeeE-EecccCCeeEEEEecCCCcEEEEEEcCCCcEEEEEC
Q 001160 407 AAISVNRCVWGPDGLMLGVAF-SKHIVHLYTYNPTGELRQHLE-IDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDV 484 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~s~d~~~~~l~sg~~d~~i~iwd~ 484 (1134)
....+..++|.+..+.|.-.. .++.|.--+++.......... +......+..+++.+.+.. +..+-...+.|.+.++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~ 106 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 106 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence 344577899999888777664 466677777654322111112 2223345778999887775 3445566789999998
Q ss_pred CCCeeeEEecCCCCCeEEEEeeccCCccEEEEE-ecCCeEEEEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCC
Q 001160 485 VAGRKQYTFEGHEAPVYSVCPHHKESIQFIFST-AIDGKIKAWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSK 563 (1134)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 563 (1134)
........+.........++++|.. |.++.+. +..+.|...+++...........-.....+++.+.++.|+.+..
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~-- 183 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 183 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence 7665545555555678889988754 2333333 23456777777655444444444456789999999988887743
Q ss_pred CCCCcEEEEeCCCCeeEEEecCccC-cceEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeeEEEEe
Q 001160 564 EGESHLVEWNESEGAIKRTYSGFRK-RSLGVVQFDTTRNRFLAA-GDEFQIKFWDMDNMNMLTTVD 627 (1134)
Q Consensus 564 ~~~~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 627 (1134)
..+.|...++.............. .....+++. +.+|+.. ..++.|+..+..++.....+.
T Consensus 184 -~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 184 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 356788888865443332222211 134456665 3445444 467788888877776665554
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=96.94 E-value=0.00041 Score=59.88 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++.. ++|+++.+.||||+..|+.++|..|+++.-..+. .+.+++++|+.+....++.+++....+++ ++.+
T Consensus 23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s 100 (131)
T d2j4ba1 23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYA 100 (131)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHH
Confidence 3444 9999999999999999999999999998766664 47789999999988888877776655543 3455
Q ss_pred HHHHHHHHHhh
Q 001160 140 RNIMLVELKKL 150 (1134)
Q Consensus 140 r~~l~~~l~~~ 150 (1134)
-..|+..|++.
T Consensus 101 ~~lL~~fL~~~ 111 (131)
T d2j4ba1 101 FDLLINFLEER 111 (131)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 56677777653
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.91 E-value=0.11 Score=55.79 Aligned_cols=247 Identities=8% Similarity=0.006 Sum_probs=127.9
Q ss_pred CCcCeEEEEEcCCCCEEEEEe-C----CCeEEEEEcCCCCccceeeEEecccCCeeEEEEecCCCcEEEEEEc-------
Q 001160 407 AAISVNRCVWGPDGLMLGVAF-S----KHIVHLYTYNPTGELRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCG------- 474 (1134)
Q Consensus 407 h~~~V~~i~~spdg~~las~~-~----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~sg~------- 474 (1134)
+.-.+..+++|||++++|.+- . ...+++.|+.+++.+.. .+. ......++|++|++. ++.+.-
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence 444456678999999999652 2 34799999999876542 121 112357899999994 233321
Q ss_pred --------CCCcEEEEECCCCee--eEEecCCCC--CeEEEEeeccCCccEEEEEec---CCeEEEE--EccCCCc----
Q 001160 475 --------DDKMIKVWDVVAGRK--QYTFEGHEA--PVYSVCPHHKESIQFIFSTAI---DGKIKAW--LYDYLGS---- 533 (1134)
Q Consensus 475 --------~d~~i~iwd~~~~~~--~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~---d~~i~~w--d~~~~~~---- 533 (1134)
....|..|.+.+... +..+..... .+..+..+. ++.+++.... +....+| |+.....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~--d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC--CcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 123688888877543 233333333 344444444 4466654332 3334444 4433211
Q ss_pred ----eeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCee--EEEecCccCcceEEEEEeCCCCEEEEEe
Q 001160 534 ----RVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAI--KRTYSGFRKRSLGVVQFDTTRNRFLAAG 607 (1134)
Q Consensus 534 ----~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 607 (1134)
............-+ .. +|..++.-+.....++.|...++..... -..+-.+....+..-.+...+.+|+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYDYV-TN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEECSSSSCEEEE-EE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeecccccceEEE-ec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 11112222222222 22 3333433332222356677777765432 1222222222344334444455666543
Q ss_pred -CCC--eEEEEECCCCeeEEEEeCCCCCCCcceEEEccCCCEEEEEeC----CCcEEEEECCCc
Q 001160 608 -DEF--QIKFWDMDNMNMLTTVDADGGLPASPRLRFNKEGSLLAVTTS----DNGIKILANSDG 664 (1134)
Q Consensus 608 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~----dg~i~iw~~~~~ 664 (1134)
.++ .|++++..+++......... ..+..+...++...+..... -.++.-+|+.++
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 443 58889998887765544332 24444444555554443322 367888898887
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.74 E-value=0.66 Score=51.57 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=45.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeEEEEeCCCCC------CCc-ceEEEccCCCEEEEEeCCCcEEEEECCCchhh
Q 001160 600 RNRFLAAGDEFQIKFWDMDNMNMLTTVDADGGL------PAS-PRLRFNKEGSLLAVTTSDNGIKILANSDGVRL 667 (1134)
Q Consensus 600 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~v-~~~~~s~d~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1134)
+..|++++.++.|+-.|..+|+.+-.+...... ..+ ..+++. +..++.++.++.+.-.|..+|+.+
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~ 140 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEE
T ss_pred CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEeccccccee
Confidence 346777888999999999999999887533110 001 122222 456778899999999999998443
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.63 E-value=0.00086 Score=49.82 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhhcchHHHHHHHHHhcCCCcc--HHHHHHHhhcccHHHHHHHhcC
Q 001160 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKHFEDQVQAGEWDEVERYLCG 59 (1134)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1134)
.+|+.+-|++||..+||.+++.+|++|+.+.++ ...-..-+++-+|..++++=++
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence 578999999999999999999999999998775 4455566888899888775443
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=96.26 E-value=0.00085 Score=58.03 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHHHHHHHHhccCHHHHHHHHHhccccccccCHHHHHHHHHhhcccCccchhhhccCCC-------chhH
Q 001160 67 RYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKDLKVFSSFNEELFKEITQLLTLDNFRQNEQLSKYGD-------TKSA 139 (1134)
Q Consensus 67 ~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~ 139 (1134)
++. .++|++|.+.||||+..|. .+|..|+++.-..+...+.+++++|+.+....++.+++....+++ ++.+
T Consensus 25 EL~-~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s 102 (134)
T d2j49a1 25 ELS-YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 102 (134)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence 444 4999999999999999875 579999998877776667788999999998888877776665544 3555
Q ss_pred HHHHHHHHHhh
Q 001160 140 RNIMLVELKKL 150 (1134)
Q Consensus 140 r~~l~~~l~~~ 150 (1134)
-..|+..|++.
T Consensus 103 ~~lLl~fL~~~ 113 (134)
T d2j49a1 103 LNLLLYFLNEN 113 (134)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 56777777663
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.45 E-value=2.5 Score=42.56 Aligned_cols=188 Identities=12% Similarity=0.125 Sum_probs=108.6
Q ss_pred EEEEEcCCCcEEEEECCCCeeeEEecCCCCCeEEEEeec----cCCccEEEEEe-cC---CeEEEEEccCCCcee-EecC
Q 001160 469 CIVTCGDDKMIKVWDVVAGRKQYTFEGHEAPVYSVCPHH----KESIQFIFSTA-ID---GKIKAWLYDYLGSRV-DYDA 539 (1134)
Q Consensus 469 ~l~sg~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~----~~~~~~l~s~~-~d---~~i~~wd~~~~~~~~-~~~~ 539 (1134)
+++....++-|++||+ +|+.+..+. .+.++.+..-. ......++.++ .+ .+|.+|.+....... .+..
T Consensus 42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 5666666777999997 588887764 45677665432 12222344444 22 368888876433322 2221
Q ss_pred C-------CCcEEEEEE--CCC-CCEEEEEeeCCCCCCcEEEEeCC---CC----eeEEEecCccCcceEEEEEeCCCCE
Q 001160 540 P-------GNWCTMMAY--SAD-GTRLFSCGTSKEGESHLVEWNES---EG----AIKRTYSGFRKRSLGVVQFDTTRNR 602 (1134)
Q Consensus 540 ~-------~~~v~~~~~--s~~-~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~ 602 (1134)
. ...++.+|+ ++. |...+.... .++.+..|.+. .+ +.++++.... .+..|.+......
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~ 193 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGS 193 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCc
Confidence 1 124666666 665 444444442 46677777653 23 3556665543 5778889999999
Q ss_pred EEEEeCCCeEEEEECCC-----CeeEEEEeCCCCCCCcceEEEc--cCCC-EEE-EEeCCCcEEEEECCCc
Q 001160 603 FLAAGDEFQIKFWDMDN-----MNMLTTVDADGGLPASPRLRFN--KEGS-LLA-VTTSDNGIKILANSDG 664 (1134)
Q Consensus 603 l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s--~d~~-~l~-~~~~dg~i~iw~~~~~ 664 (1134)
|+.+-++..|+.++++. +..+....+..-...+-.++.- .++. +|+ +.-.+++..+||..+.
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99998888777776642 2222222221122345556543 2333 444 4444789999998654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.42 E-value=1.7 Score=43.87 Aligned_cols=199 Identities=9% Similarity=0.179 Sum_probs=113.0
Q ss_pred cCCCEEEEEe-CCeEEEEECCCCeEEEEecCCCCceEEEEEc------CCCCcEEEEEe--CCC--cEEEEEcCC-ceEE
Q 001160 850 KNDSYVMSAS-GGKVSLFNMMTFKVMTMFMSPPPAATFLAFH------PQDNNIIAIGM--EDS--SVQIYNVRV-DEVK 917 (1134)
Q Consensus 850 ~dg~~la~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s------~~~~~~lasg~--~dg--~i~iwd~~~-~~~~ 917 (1134)
|+..+++... .+-|.+||++ |+.+..+. .+++..+..- . ...-+++++ .++ +|.+|.+.. ...+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~-~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNG-KKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETT-EEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCC-cceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 4555666555 5669999996 77777765 3455544432 2 233355555 223 577887752 2233
Q ss_pred EEecCc-------ccceEEEEE--ecC-CC-EEEEEcCCCcEEEEeCCCcc--cccceeeecCCCCCCCCcCceEEEECC
Q 001160 918 TKLKGH-------QNRITGLAF--SPT-LN-ALVSSGADAQLCMWSIDKWE--KLKSRFIQAPAGRQSPLVGETKVQFHN 984 (1134)
Q Consensus 918 ~~l~~h-------~~~i~~l~~--s~d-~~-~l~s~~~D~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~fsp 984 (1134)
..+... ...+..+|+ ++. +. +++....+|.+..|.+...+ .+....++...-. ..+..|++.+
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDd 189 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADD 189 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEET
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeC
Confidence 333221 124677777 554 44 45666778999888774322 1222233332211 3578999999
Q ss_pred CCcEEEEEEC-CeEEEEeCC---C--cceeccCCCCCCCCCeEEEEEc--cCC--CEEEEEecCCcEEEEeCCCc-ceee
Q 001160 985 DQTHLLVVHE-SQISVYDSK---L--ECSRSWSPKDALPAPISSAIYS--CDG--LLVYAGFCDGAIGVFDAETL-RFRC 1053 (1134)
Q Consensus 985 dg~~l~~~~d-~~v~vwd~~---~--~~~~~~~~~~~h~~~v~~v~~s--~dg--~~l~~~~~dg~I~vwd~~~~-~~~~ 1053 (1134)
....|.++.. ..|..++.+ . ..+............+..++.- .++ .+|++.-.+.+..|||..+. +.+.
T Consensus 190 e~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 190 EYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp TTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence 9999998754 455555552 1 1111111122236678888753 333 34455556788999999873 5565
Q ss_pred ecC
Q 001160 1054 RIG 1056 (1134)
Q Consensus 1054 ~~~ 1056 (1134)
.+.
T Consensus 270 ~F~ 272 (353)
T d1h6la_ 270 DFQ 272 (353)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.14 E-value=2.5 Score=42.66 Aligned_cols=160 Identities=6% Similarity=0.045 Sum_probs=91.6
Q ss_pred eeEEEEecCCCcEEEEEEc------------CCCcEEEEECCCCeeeE-Ee--cCC-----CCCeEEEEeeccCCcc-EE
Q 001160 456 VNDIAFAHPNKQLCIVTCG------------DDKMIKVWDVVAGRKQY-TF--EGH-----EAPVYSVCPHHKESIQ-FI 514 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~------------~d~~i~iwd~~~~~~~~-~~--~~h-----~~~v~~i~~~~~~~~~-~l 514 (1134)
..+++..|+|. .+++++ ..|.|.++|+.+.+... .+ .+. .-.-..+.+....+|. +|
T Consensus 37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L 114 (340)
T d1v04a_ 37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 114 (340)
T ss_dssp CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence 44677778776 444433 24889999987654321 22 111 1223455544444444 44
Q ss_pred EEEe---cCCeEEEEEccCCCceeE----ecC-CCCcEEEEEECCCCCEEEEEeeC-------------CCCCCcEEEEe
Q 001160 515 FSTA---IDGKIKAWLYDYLGSRVD----YDA-PGNWCTMMAYSADGTRLFSCGTS-------------KEGESHLVEWN 573 (1134)
Q Consensus 515 ~s~~---~d~~i~~wd~~~~~~~~~----~~~-~~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~i~~wd 573 (1134)
++.. ...+|.+|++........ +.. .....+.+++..++.++++-... +-..+.+.-||
T Consensus 115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 4443 456788888875554332 221 22357889999999888874210 01133455555
Q ss_pred CCCCeeEEEecCccCcceEEEEEeCCCCEEEEEe-CCCeEEEEECCCCe
Q 001160 574 ESEGAIKRTYSGFRKRSLGVVQFDTTRNRFLAAG-DEFQIKFWDMDNMN 621 (1134)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 621 (1134)
.. +......+.. ..+.++++||+++|+++. ..+.|++|++....
T Consensus 195 ~~--~~~~~~~~l~--~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 195 PN--DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp SS--CEEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CC--ceEEEcCCCC--ccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 43 3222222221 567899999998887754 77889999987543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.01 E-value=2 Score=38.57 Aligned_cols=152 Identities=10% Similarity=0.131 Sum_probs=86.5
Q ss_pred eeEEEEecCCCcEEEEEEcCCCcEEEEECCCCeeeE--EecCCCCCeEEE--------EeeccCCccEEEEEec-CCeEE
Q 001160 456 VNDIAFAHPNKQLCIVTCGDDKMIKVWDVVAGRKQY--TFEGHEAPVYSV--------CPHHKESIQFIFSTAI-DGKIK 524 (1134)
Q Consensus 456 v~~l~~s~d~~~~~l~sg~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~i--------~~~~~~~~~~l~s~~~-d~~i~ 524 (1134)
+.-+...-|++. ...+|+......+|-++.|+... .+.+ -+.|+.+ .+...+. .-++++.. .|.++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~~g~~-~sfF~adl~SG~lr 180 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGR-VSLFTSNLSSGGLR 180 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTE-EEEEEEETTTEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeeecCCc-ceEEEEecccCCEE
Confidence 444444556666 67777777778888888876532 3322 2234433 2221111 22333333 44454
Q ss_pred EEEccCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEE-ec-----CccCcceEEEEEeC
Q 001160 525 AWLYDYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRT-YS-----GFRKRSLGVVQFDT 598 (1134)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~-----~~~~~~v~~~~~~~ 598 (1134)
++ ....+.++.....+..+. ++.... -+.....-+|+++++.-+. +. ......|.-+-+.|
T Consensus 181 i~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VF-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EE-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred Ee-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 44 445667777777777666 443322 2334444668887764432 21 12222466677999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeEEE
Q 001160 599 TRNRFLAAGDEFQIKFWDMDNMNMLTT 625 (1134)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1134)
+++.++.+-.||.-++|. +|+.+..
T Consensus 248 dd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp TSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred CCcEEEEEecCCchheee--cceEecC
Confidence 999989999999999986 4555443
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=1.9 Score=44.04 Aligned_cols=182 Identities=12% Similarity=0.059 Sum_probs=108.4
Q ss_pred CCceEEEEeccCCCEEEEEeCCeEEEEECCC-------------CeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcE
Q 001160 840 EESAACIALSKNDSYVMSASGGKVSLFNMMT-------------FKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSV 906 (1134)
Q Consensus 840 ~~~i~~~~~s~dg~~la~~sdg~i~vwd~~~-------------~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i 906 (1134)
.....-+++++...+++.|+...+.|..++. .+.... -..|..++|+. + .|++. .++.+
T Consensus 36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~-d--~l~v~-~~~~l 107 (381)
T d1xipa_ 36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHG-D--QVLVS-TRNAL 107 (381)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEET-T--EEEEE-ESSEE
T ss_pred ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeC-C--EEEEE-eCCCE
Confidence 4456678999988888888866777876431 112222 23689999986 3 45444 45678
Q ss_pred EEEEcCCceEEEEecCcccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCC
Q 001160 907 QIYNVRVDEVKTKLKGHQNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQ 986 (1134)
Q Consensus 907 ~iwd~~~~~~~~~l~~h~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg 986 (1134)
..++..+-........-..++.++.++|. .++....++.+.++++..++.... .....+. .....+.+++|++.|
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~--~~~v~~~-~~~~~~~~v~ws~kg 182 (381)
T d1xipa_ 108 YSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL--AQNVTSF-DVTNSQLAVLLKDRS 182 (381)
T ss_dssp EEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE--EESEEEE-EECSSEEEEEETTSC
T ss_pred EEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc--cCCcceE-EecCCceEEEEeCCc
Confidence 88877654333333333456778887764 566667788899999988763221 1000000 001357889999999
Q ss_pred cEEEEEECCeEEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEE
Q 001160 987 THLLVVHESQISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAG 1035 (1134)
Q Consensus 987 ~~l~~~~d~~v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~ 1035 (1134)
+.++++.++...+-. +..+...+.........|.+|.|-.+..++++-
T Consensus 183 kq~v~~~g~~~q~k~-~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 183 FQSFAWRNGEMEKQF-EFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEEETTEEEEEE-EECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEEeCCCceeecc-CCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 998887554443321 111111222111224578899998877776654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=1.1 Score=44.14 Aligned_cols=109 Identities=7% Similarity=-0.019 Sum_probs=51.3
Q ss_pred cEEEEEecC-----CeEEEEEccCCCceeEecCCCC-cEEEEEECCCCCEEEEEeeCCC-CCCcEEEEeCCCCeeEEEec
Q 001160 512 QFIFSTAID-----GKIKAWLYDYLGSRVDYDAPGN-WCTMMAYSADGTRLFSCGTSKE-GESHLVEWNESEGAIKRTYS 584 (1134)
Q Consensus 512 ~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~ 584 (1134)
..++.|+.+ ..+..||..+.+....-..... ...+.+. .+++.++.++.+.. .......+|..+.+....-.
T Consensus 150 ~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (288)
T d1zgka1 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 228 (288)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred cceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC
Confidence 455555543 3467777765433221111111 1112222 23455555543221 22457788887766543322
Q ss_pred CccCcceEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCee
Q 001160 585 GFRKRSLGVVQFDTTRNRFLAAGDEF-----QIKFWDMDNMNM 622 (1134)
Q Consensus 585 ~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 622 (1134)
......-.+++. .+++.++.||.++ .+.+||+.+.+-
T Consensus 229 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 229 MKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 211111112322 3567777776443 378899887653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=6.9 Score=39.62 Aligned_cols=147 Identities=9% Similarity=0.016 Sum_probs=87.9
Q ss_pred ceEEEEEecCCcceEEeeccCeeEEeecccccCCCCCCcccccCcccccCCCCCccccccCCCCCCCCceEEEEeccCCC
Q 001160 774 KVVRLIYTNSGLSLLALASNAVHKLWKWQRTERNPSGKATANVAPQLWQPPSGTLMTNDINESKPTEESAACIALSKNDS 853 (1134)
Q Consensus 774 ~v~~~~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~h~~~~i~~~~~s~dg~ 853 (1134)
...-+++++...++++++.++ +.|-....-...... ...+....... . -..|..++|+.|
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~------------~~~~~~~~~~~----~-ip~v~~vafs~d-- 97 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS------------DSTPLTFKWEK----E-IPDVIFVCFHGD-- 97 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS------------SSCCCCCSEEE----E-CTTEEEEEEETT--
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc------------cCCCCcceecc----C-CCCeEEEEeeCC--
Confidence 456788888877777777775 455543321000000 00000000001 1 235888999765
Q ss_pred EEEEEeCCeEEEEECCCCeEEEEecCCCCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEEEecC-----cccceE
Q 001160 854 YVMSASGGKVSLFNMMTFKVMTMFMSPPPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKTKLKG-----HQNRIT 928 (1134)
Q Consensus 854 ~la~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~~l~~-----h~~~i~ 928 (1134)
.+++..++.+..++..+............++..+.+.| ..++....+|.+.++++..++......+ -.+.+.
T Consensus 98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~ 174 (381)
T d1xipa_ 98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL 174 (381)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence 57766788888898876544444444456788888877 3566677899999999988754332211 124577
Q ss_pred EEEEecCCCEEEEEc
Q 001160 929 GLAFSPTLNALVSSG 943 (1134)
Q Consensus 929 ~l~~s~d~~~l~s~~ 943 (1134)
+++|++.|..++++.
T Consensus 175 ~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 175 AVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEEEeCCcEEEEEeC
Confidence 788887777777663
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.67 E-value=1.8 Score=45.99 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=40.5
Q ss_pred ccceEEEEEecCCCEEEEEcCCCcEEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCC
Q 001160 924 QNRITGLAFSPTLNALVSSGADAQLCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHND 985 (1134)
Q Consensus 924 ~~~i~~l~~s~d~~~l~s~~~D~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspd 985 (1134)
-..-++|+|.||+++|++--..|.|++++..+++.....-+...............++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 34568999999999998875678999998887664322111111111111246789999986
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.24 E-value=3.6 Score=43.39 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCceEEEEEcCCCCcEEEEEeCCCcEEEEEcCCceEEE--Eec------CcccceEEEEEecC
Q 001160 881 PPAATFLAFHPQDNNIIAIGMEDSSVQIYNVRVDEVKT--KLK------GHQNRITGLAFSPT 935 (1134)
Q Consensus 881 ~~~i~~l~~s~~~~~~lasg~~dg~i~iwd~~~~~~~~--~l~------~h~~~i~~l~~s~d 935 (1134)
-....+|+|.| +++++++--..|.|++++..+++... .+. .-......|+|+|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 34678999999 89988766457999999987765432 221 11245789999996
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=4.4 Score=39.44 Aligned_cols=217 Identities=14% Similarity=0.088 Sum_probs=99.4
Q ss_pred CeEEEEECCCCeEEE--EecCCCCceEEEEEcCCCCcEEEEEeCC---------CcEEEEEcCCceEEEE--ecCcccce
Q 001160 861 GKVSLFNMMTFKVMT--MFMSPPPAATFLAFHPQDNNIIAIGMED---------SSVQIYNVRVDEVKTK--LKGHQNRI 927 (1134)
Q Consensus 861 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~lasg~~d---------g~i~iwd~~~~~~~~~--l~~h~~~i 927 (1134)
..+.+||..+++=.. .+......-..+.+ ++++++.|+.. ..+.+||..+.+-... +..-...-
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 358899998865322 22221112222222 56777777631 3577888876543321 11111111
Q ss_pred EEEEEecCCCEEEEEcCCCc-----EEEEeCCCcccccceeeecCCCCCCCCcCceEEEECCCCcEEEEE-E-----CCe
Q 001160 928 TGLAFSPTLNALVSSGADAQ-----LCMWSIDKWEKLKSRFIQAPAGRQSPLVGETKVQFHNDQTHLLVV-H-----ESQ 996 (1134)
Q Consensus 928 ~~l~~s~d~~~l~s~~~D~~-----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fspdg~~l~~~-~-----d~~ 996 (1134)
.+. ..++++++.++.++. +..++..+..... ....... ... ..+.. .+++.++.+ . ...
T Consensus 96 ~~~--~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-r~~-~~~~~-~~~~~~~~GG~~~~~~~~~ 165 (288)
T d1zgka1 96 GVG--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL-----VAPMLTR-RIG-VGVAV-LNRLLYAVGGFDGTNRLNS 165 (288)
T ss_dssp EEE--EETTEEEEECCEETTEECCCEEEEETTTTEEEE-----CCCCSSC-CBS-CEEEE-ETTEEEEECCBCSSCBCCC
T ss_pred ecc--ccceeeEEecceecccccceeeeeccccCcccc-----ccccccc-ccc-ceeee-eeecceEecCcccccccce
Confidence 122 236666666654443 4446665544211 1111110 011 12222 234444443 2 245
Q ss_pred EEEEeCCCcceeccCCCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCcceeeecCCcccccccccCCCCc
Q 001160 997 ISVYDSKLECSRSWSPKDALPAPISSAIYSCDGLLVYAGFCDG-----AIGVFDAETLRFRCRIGPSAYIPTYAVSNTAH 1071 (1134)
Q Consensus 997 v~vwd~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~~~~~dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1134)
+..||.............. .....+++ ..++++++.|+.++ ....+|..+.+....-.. +. .. ..
T Consensus 166 ~~~~d~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~----p~---~r-~~ 235 (288)
T d1zgka1 166 AECYYPERNEWRMITAMNT-IRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KH---RR-SA 235 (288)
T ss_dssp EEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC----SS---CC-BS
T ss_pred EEEeecccccccccccccc-cccccccc-ceeeeEEEecCccccccccceeeeeecceeeecccCc----cC---cc-cc
Confidence 7888884444333322211 11111222 23566666665543 466777776544322111 11 01 11
Q ss_pred cEEEeecCCCCCEEEEEeCCC-----cEEEEecCCCc
Q 001160 1072 PLVIAPHPSEPNQIALGMSDG-----AVHVVEPSDAE 1103 (1134)
Q Consensus 1072 ~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~~~~~~ 1103 (1134)
..++.. ++++++.|+.++ .+.+||+.+.+
T Consensus 236 ~~~~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 236 LGITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CEEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEEEEE---CCEEEEEecCCCCeecceEEEEECCCCE
Confidence 122222 568888888765 37788887654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.82 E-value=11 Score=37.68 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCCCccceeeEEeccc-----CCeeEEEE--ecCCCcEEEE
Q 001160 411 VNRCVWGPDGLMLGVAFS------------KHIVHLYTYNPTGELRQHLEIDAHV-----GGVNDIAF--AHPNKQLCIV 471 (1134)
Q Consensus 411 V~~i~~spdg~~las~~~------------dg~i~iwd~~~~~~~~~~~~~~~h~-----~~v~~l~~--s~d~~~~~l~ 471 (1134)
--.++..|||..+++++. .|.|.++|+++.........+.+.. -.-..+.. .++|.. +|+
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~ 115 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL 115 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence 446888999988877642 4899999998765433222222211 11233333 456654 344
Q ss_pred EE---cCCCcEEEEECCCCee-e---EEecC-CCCCeEEEEeeccCCccEEEEEec---------------CCeEEEEEc
Q 001160 472 TC---GDDKMIKVWDVVAGRK-Q---YTFEG-HEAPVYSVCPHHKESIQFIFSTAI---------------DGKIKAWLY 528 (1134)
Q Consensus 472 sg---~~d~~i~iwd~~~~~~-~---~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~---------------d~~i~~wd~ 528 (1134)
.. ....+|.+|++..+.. + .++.. .....+.+++..+ +.+++|-.. -++..+|..
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~--g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~ 193 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP--EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 193 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET--TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC--CCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence 43 3456788888754332 1 22221 2234677777543 367776311 123344444
Q ss_pred cCCCceeEecCCCCcEEEEEECCCCCEEEEEeeCCCCCCcEEEEeCCCCeeEEEe-cCccCcceEEEEEeCC-CCEEEEE
Q 001160 529 DYLGSRVDYDAPGNWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGAIKRTY-SGFRKRSLGVVQFDTT-RNRFLAA 606 (1134)
Q Consensus 529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~~~ 606 (1134)
+........ ..-...+.++++||+++|+.+.. ..+.|+.|++.....+... ...-......+.+.+. |.+.+++
T Consensus 194 ~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 194 SPNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CSSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred cCCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 444433322 22346789999999999988764 3567998888643322111 1111224556777764 4444443
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