Citrus Sinensis ID: 001172

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130---
MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVPSSPRSPPRNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEccEEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEEEEEEccccccEEEcccEEEccccccccccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEcccccccEcccccccccccccHHHEEEccccccccccccccccccccccccccccccccccccEEEEEEcccHcccccccccEEEEcccEEEEEEEEcccccccEEEEEEEEccccccccccEEEEEEEEEEEEcccccEEEEccEEEEccccccccccccEEHHHcccccEEccEEEEEEEEEEEEcccccEEEEEccccccccEEEcccccHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccccccEEEEcccEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccccHHHHHHHHHHcccccHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHcHHHHHHHHccccccccccccccccccccccccccccEEEccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccc
magiaseesgvgrsvegissgqrcqsgEALAEwrsseqvengtpstsppywdtdddddgwpkpselygkyTWRIEKFSQISKRELRSnafevggykWYILIYPQGCDVCNHLSLFLCvanhdkllpgwshfAQFTIAVvnrdpkkskysdtLHRFWKKEHDWGWKKFMELskvsdgfkdgdTLIIKAQVQVIRektdrpfrcldcqYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKalegqskskKTKAKlldaedtpppivhvendmFVLVDDVLLLLERaaleplppkdekgpqnrtkesnsgedfnkdsiERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRnnrkgkekkreERSSMALSdrledenpsdekkefivedaqplpekpdvledvsdvsdsvdggaevlqpdsedrdtspvnwdtdasevippteasssgvcnlssvpngvtekrnasvmddssstcstdsvpsvvmygpykgnslanyqnqkspsrgknqrgkstydgnvwatetenqpsrpaadagehndisessksgeyeSEAVSSLQhqaklpeqnvakeeasspqkkssmkdpvdterpkektaavpssprspprnlqspvqlksvpksiatadpvpqvkslsngqqqTDQVaesctsspgagvckpEIQKAAASKQTeklmdpqvpnmsrpssaplvpgprptapvvsvvHTAPLLARSvsaagrlgpdlapathgyipqsyrnvkmgnpvgssspglthpsssslgpspaysqqqalvsapiflpqnseridpnsvqsafpfsmVTRDVLQSGHQWIESSqrdasrivhsdpssmandiqnldlykrvpsgsqeyfsnefpagtsgrqtqgvlvdefphldiindllddehgvgmaAGASTVLQslsngphtlnrqfsfprdismssdigssagsckfertrsyhddgfqrgysssvghfdsvrefipqatalpysngqidgmiptmwpmpgsdlslmgmrntegegypyfhpeysnmacgvngyavfrpsngh
magiaseesgvgrsvegissgqrcQSGEALAEwrsseqvengtpstsppywdtdddddgWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVvnrdpkkskysdtlhrfwkkehdwgWKKFMELSKVSDGFKDGDTLIIKAQVqvirektdrpfrcldcqyrRELVRVYLTNveqicrrfveerrgklgrliedkarwssFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAklldaedtpppivhvenDMFVLVDDVLLLLERAaleplppkdekgpqnrtkesnsgedfnkdsierdERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKakrgaaekekkakkklakqkrnnrkgkekkreerssmalsdrledenpsdekkefivedaqplpekpdVLEDVSDVSDSVDGgaevlqpdsedrdtspvnWDTDASEvippteasssgvcnlssvpngVTEKrnasvmddssstcstdsvpSVVMYGPYKGNSLAnyqnqkspsrgknqrgkSTYDGNVWATEtenqpsrpaadagehNDISESSKSGEYESEAVSSLQhqaklpeqnvakeeasspqkkssmkdpvdterpkektaavpssprspprnlqspvqLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSdpssmandiqnLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGtpstsppywdtdddddgwpkpsELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVlvddvlllleraaleplpPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESeqkakrgaaekekkakkklakqkrnnrkgkekkreerSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEdvsdvsdsvdGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNAsvmddssstcstdsvpsvvMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDIsessksgeyeseAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVpssprspprNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVgssspglthpsssslgpspAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRdismssdigssagsCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
****************************************************************ELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLK************************IVHVENDMFVLVDDVLLLLERAA**************************************ELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELI***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVSVVHTAPLLARSVSA************HGYI****************************************************************FSMVTRDVL***********************************************************QGVLVDEFPHLDIINDLLDDEHGVGMAAGASTV*************************************************GYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVF******
****************************************************************ELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQ***********DAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEG****************TPPPIVHVENDMFVLVDDVLLLLERAALEP************************DSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVA***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************DIINDLLDDEHG**********************************************************************************************MWPMPG*D*************Y*YFHPEYSNMACGVNGYA********
**********************************************SPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEG***********LDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPP**********************SIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWL***********************************************************EFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQ***********NWDTDASEVI**********CNLSSVPNGVTEKR***************SVPSVVMYGPYKGNSLANYQ***************TYDGNVWATET*************************************AKLP**************************************************LKSVPKSIATADPVPQV**********************AGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVG**********************QQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQ******************SMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
**********************************************************GWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPL*********************NKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKA******************************************************************************************************************************************************SVVMYGPYKGNSLANYQNQK***********************************************************Q*************************************************************************************************************************************************************************YIPQSYRNVKMGN*********************************************************T************************************DL*KR************FPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAG*STVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPS***
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MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEELIREEEAAWLAESEQKAxxxxxxxxxxxxxxxxxxxxxxxxxxxxKREERSSMALSDRLEDENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDASEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEAVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVPSSPRSPPRNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPSPAYSQQQALVSAPIFLPQNSERIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSNGH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1133 2.2.26 [Sep-21-2011]
Q8RY181055 MATH domain-containing pr no no 0.912 0.980 0.538 0.0
Q84WU21115 Ubiquitin carboxyl-termin no no 0.107 0.109 0.433 7e-22
Q9FPT11116 Ubiquitin carboxyl-termin no no 0.107 0.109 0.433 2e-21
Q930091102 Ubiquitin carboxyl-termin yes no 0.113 0.117 0.319 5e-07
Q4VSI41103 Ubiquitin carboxyl-termin yes no 0.113 0.116 0.319 8e-07
Q6A4J81103 Ubiquitin carboxyl-termin yes no 0.113 0.116 0.312 2e-06
Q6U7I11101 Ubiquitin carboxyl-termin yes no 0.127 0.131 0.288 1e-05
Q5B3C81125 Stress response protein n yes no 0.072 0.072 0.345 4e-05
Q0CP151129 Stress response protein n N/A no 0.064 0.064 0.441 8e-05
Q2GZN91255 Stress response protein N N/A no 0.065 0.058 0.390 0.0001
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1 Back     alignment and function desciption
 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1154 (53%), Positives = 759/1154 (65%), Gaps = 120/1154 (10%)

Query: 1    MAGIASEESGVGRS-VEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDG 59
            M+   +E+SG GRS +E  S+GQR QS EA+AEWRSSEQVENGTPSTSPPYWD DDDDD 
Sbjct: 1    MSESTNEDSGAGRSSLEENSNGQRSQSEEAIAEWRSSEQVENGTPSTSPPYWDIDDDDDF 60

Query: 60   WPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVA 119
              KPS+L+GK TW IEKFS I+KRELR + FEVGGYKWYILIYPQGCDVCNHLSLFLCVA
Sbjct: 61   GSKPSQLFGKNTWTIEKFSDINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVA 120

Query: 120  NHDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGF-K 178
            +H+KLLPGWSHFAQFTIAV N+DPKKSK+SDTLHRFWKKEHDWGWKKF+EL K+ +GF  
Sbjct: 121  HHEKLLPGWSHFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKEGFID 180

Query: 179  DGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLI 238
            D   L IKAQVQVIRE+ DRPFRCL  +YR ELVRVYL NVEQIC RFVEE+R KLGRLI
Sbjct: 181  DSGCLTIKAQVQVIRERVDRPFRCLHYKYREELVRVYLGNVEQICWRFVEEKRSKLGRLI 240

Query: 239  EDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLK 298
            EDKA+W SFCAFW+G+DQN+RRRMSREK D ILK+VVKHFF+EKEVTSTLVMDSLYSGLK
Sbjct: 241  EDKAKWKSFCAFWMGLDQNSRRRMSREKMDVILKIVVKHFFVEKEVTSTLVMDSLYSGLK 300

Query: 299  ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQ 358
            ALEGQ+K+K+++ +L+D E++  PIV V+ D F LVDDVLLLLE+AALEPLP K+EK  Q
Sbjct: 301  ALEGQNKNKESRPRLMDTEESTAPIVSVDKDSFALVDDVLLLLEKAALEPLPKKEEKSSQ 360

Query: 359  NRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEE 418
            NRTK+ N+GE+F+++++ERD+RRLTELGRRTVEIFVLAHIFSNKIEVAYQEA+A KRQEE
Sbjct: 361  NRTKDGNAGEEFSREAVERDDRRLTELGRRTVEIFVLAHIFSNKIEVAYQEAIAWKRQEE 420

Query: 419  LIREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLE 478
            LIREEE AWLAESEQK KRGA+EKEKK+KKK AKQK+N  KGKE ++E++       R +
Sbjct: 421  LIREEEEAWLAESEQKGKRGASEKEKKSKKKQAKQKKNKNKGKEMRKEDKV------RTQ 474

Query: 479  DENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTD 538
             E    EK+E +   A+   EKPD L DVSDVSDSVD  AE+LQ DSEDR++SPV+W+ D
Sbjct: 475  TEEREIEKEECVRAIAESSAEKPDTLGDVSDVSDSVDSSAEILQLDSEDRESSPVHWEMD 534

Query: 539  ASEVIPPTEASSS-GVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNS 597
            ASEV PP+   +S G  N  S+PNGV E++  S MDDSSSTCS DS+ S V  G YKGN 
Sbjct: 535  ASEVHPPSAGDTSRGRGNSFSIPNGVAERKGLSTMDDSSSTCSNDSIQSGVANGSYKGNV 594

Query: 598  LANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESE 657
            L N Q+QK  S GK Q GK + D N  A+E E+QPSR A+D    +  S+  + GE +  
Sbjct: 595  L-NCQSQKWFSNGKIQPGKVS-DSNSLASEKEHQPSRLASDPKNQSHSSDIRRVGEADI- 651

Query: 658  AVSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAVPSSPRSPPRNLQSP 717
             +S +Q     PE         SP+++S +    +  + KEK+AAV S  R+ P N  SP
Sbjct: 652  VISHIQK----PE---------SPKERSPVSKDPNMIQMKEKSAAVLSPSRAAPWNPPSP 698

Query: 718  VQLKSVPKSIATADPVPQ-----VKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAAS 772
            VQ K   K ++  + VP      VKS S+      + A+  T  P A     +IQK A+ 
Sbjct: 699  VQAKPEKKGVSNVEAVPNRKVISVKSPSSHHASPSREAQLQTVGPRA-----DIQKIASP 753

Query: 773  KQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPL-LARSVSAAGRLGPDLAPA 831
            K  E+      P MSRP SAP++P P   APV+S V T+   LARS+S+ GRLG   +P 
Sbjct: 754  KPVEQ----PAPPMSRPLSAPIIP-PTQAAPVISAVQTSTASLARSMSSTGRLG---SPT 805

Query: 832  -THGYIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGPS--PAYSQQQALVSAPIFLPQNSE 888
             +  Y PQSY++  +G      S G THPSS S G S  P YS       +PI +     
Sbjct: 806  HSQAYNPQSYKHAIVG------SSGFTHPSSQSSGTSTLPPYSH-----PSPISV----- 849

Query: 889  RIDPNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRV- 947
                 S QS FP ++ + DV   G  W   S            +   N      +   + 
Sbjct: 850  -----SNQSGFPINVGSWDVSSGGLLWTGGSSSTRDTTTTISGNHKTNTYNAPVVTTSIR 904

Query: 948  PSGSQEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSN 1007
            P+  Q            GR  Q ++ DEFPHLDIINDLL DEHG        T+  S+  
Sbjct: 905  PTNVQ-----------IGRTAQSLMTDEFPHLDIINDLLADEHG--------TMDNSVYR 945

Query: 1008 GPHTLNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIP 1067
             P   N Q+S+       +D+G S+      R+RSY DDGF + Y           E++P
Sbjct: 946  VPQQFNNQYSY----HGGADLGISS------RSRSYSDDGFHQSYG----------EYMP 985

Query: 1068 Q-ATALPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTE------GEGYPYFHPEYSN-MAC 1119
              A++ PY NGQ      + W M   D SL  MRN +         Y YF  + SN    
Sbjct: 986  HSASSSPYGNGQTQ----SQWQMANMDFSLPAMRNQDDVSASATATYSYFDLDSSNPNLS 1041

Query: 1120 GVNGYAVFRPSNGH 1133
            G+NGY  FRPSNGH
Sbjct: 1042 GINGYRDFRPSNGH 1055

Arabidopsis thaliana (taxid: 3702)
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1 Back     alignment and function description
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2 Back     alignment and function description
>sp|Q93009|UBP7_HUMAN Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2 Back     alignment and function description
>sp|Q4VSI4|UBP7_RAT Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6A4J8|UBP7_MOUSE Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1 Back     alignment and function description
>sp|Q6U7I1|UBP7_CHICK Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1 Back     alignment and function description
>sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nst1 PE=3 SV=1 Back     alignment and function description
>sp|Q0CP15|NST1_ASPTN Stress response protein nst1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nst1 PE=3 SV=1 Back     alignment and function description
>sp|Q2GZN9|NST1_CHAGB Stress response protein NST1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=NST1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1133
2241078911112 predicted protein [Populus trichocarpa] 0.973 0.991 0.742 0.0
2241021771111 predicted protein [Populus trichocarpa] 0.974 0.993 0.746 0.0
2254329631146 PREDICTED: MATH domain-containing protei 0.998 0.986 0.734 0.0
3565752491137 PREDICTED: MATH domain-containing protei 0.987 0.984 0.697 0.0
3565747441162 PREDICTED: MATH domain-containing protei 0.992 0.967 0.677 0.0
3565366591139 PREDICTED: MATH domain-containing protei 0.989 0.984 0.700 0.0
3574396591136 Ubiquitin carboxyl-terminal hydrolase [M 0.976 0.973 0.664 0.0
4494326021136 PREDICTED: MATH domain-containing protei 0.992 0.990 0.673 0.0
2977371821074 unnamed protein product [Vitis vinifera] 0.939 0.991 0.703 0.0
2978486521071 hypothetical protein ARALYDRAFT_470409 [ 0.917 0.971 0.535 0.0
>gi|224107891|ref|XP_002314643.1| predicted protein [Populus trichocarpa] gi|222863683|gb|EEF00814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1547 bits (4006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 848/1142 (74%), Positives = 935/1142 (81%), Gaps = 39/1142 (3%)

Query: 1    MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGW 60
            MAGI  EE+GVGRS EGISSGQRCQSGE LAEWRSSEQVENGTPSTSPPYWDTDDDDDG 
Sbjct: 1    MAGIVGEEAGVGRSTEGISSGQRCQSGELLAEWRSSEQVENGTPSTSPPYWDTDDDDDGG 60

Query: 61   PKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN 120
            PKPSEL+GKYTW+IEKFSQI+KRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN
Sbjct: 61   PKPSELFGKYTWKIEKFSQINKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN 120

Query: 121  HDKLLPGWSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFKDG 180
            HDKLLPGWSHFAQFTIAVVN+D KKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGF D 
Sbjct: 121  HDKLLPGWSHFAQFTIAVVNKDAKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFLDA 180

Query: 181  -DTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGRLIE 239
             DTLIIKAQVQVIREK DRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLG+L+E
Sbjct: 181  TDTLIIKAQVQVIREKADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGKLLE 240

Query: 240  DKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKA 299
            DK RWSSFCAFWLG+DQNARRRMSREKTD ILKVVVKHFFIEKEVTSTLVMDSLYSGLKA
Sbjct: 241  DKNRWSSFCAFWLGMDQNARRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKA 300

Query: 300  LEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQN 359
            LEGQ+KSKK +AKLLDAE+ P PIV VE DMFVLVDDVLLLLERAA+EPLPPKDEKGPQN
Sbjct: 301  LEGQTKSKKGRAKLLDAEEMPAPIVCVEKDMFVLVDDVLLLLERAAMEPLPPKDEKGPQN 360

Query: 360  RTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAVALKRQEEL 419
            RTK+ +SGEDFNKDSIERDERRLTELGRRTVEIFVLAHIF++KIEV+YQEAVALKRQEEL
Sbjct: 361  RTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFNHKIEVSYQEAVALKRQEEL 420

Query: 420  IREEEAAWLAESEQKAKRGAAEKEKKAKKKLAKQKRNNRKGKEKKREERSSMALSDRLED 479
            IREEEAAWLAESEQKAKRGA EKEKK KKK AKQKRNNRKGK+K RE+RS +A+ D+ ++
Sbjct: 421  IREEEAAWLAESEQKAKRGATEKEKKLKKKQAKQKRNNRKGKDKGREDRSGVAVVDKYQE 480

Query: 480  ENPSDEKKEFIVEDAQPLPEKPDVLEDVSDVSDSVDGGAEVLQPDSEDRDTSPVNWDTDA 539
             N S+E KEF VE+ +P+ EKP+VLEDVSDVSDSVDG AEVLQ DSEDRD SPVNWDTD+
Sbjct: 481  SNLSNENKEFAVEEVRPVMEKPEVLEDVSDVSDSVDGVAEVLQHDSEDRDASPVNWDTDS 540

Query: 540  SEVIPPTEASSSGVCNLSSVPNGVTEKRNASVMDDSSSTCSTDSVPSVVMYGPYKGNSLA 599
            SEV PPTE SSSGV  LSSVPNG ++KR+   MDDSSSTCSTDSVPSVVM  PYKGNS  
Sbjct: 541  SEVHPPTEVSSSGVSGLSSVPNGTSDKRSTYAMDDSSSTCSTDSVPSVVMNDPYKGNSYL 600

Query: 600  NYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDISESSKSGEYESEA- 658
            NYQ +K PSRGKNQRGK  +D + W  E +NQP  PA+D G+H+D++ SSK+ + E EA 
Sbjct: 601  NYQFEKLPSRGKNQRGKMAHDAS-WTAEMDNQPPEPASDTGDHSDVTRSSKAADCELEAV 659

Query: 659  VSSLQHQAKLPEQNVAKEEASSPQKKSSMKDPVDTERPKEKTAAV----PSSPRSPPRNL 714
            V  LQ +    EQ+V K        K+S KD V+ ERPKEKTAAV     S P SPP+N+
Sbjct: 660  VHDLQDRMVKLEQHVIK------TGKTSNKDLVEVERPKEKTAAVPSSPRSPPTSPPKNV 713

Query: 715  QSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVAESCTSSPGAGVCKPEIQKAAASKQ 774
             S VQLKS  KS AT D     K+ SN   Q D+ A S TS   AG+ KPEIQ    +KQ
Sbjct: 714  PSTVQLKSESKSSATMDLSQVKKASSNCSMQADKAATSATSPQNAGIPKPEIQNVPTAKQ 773

Query: 775  TEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSVVHTAPLLARSVSAAGRLGPDLAPATHG 834
            ++K    QVP MSRPSSAPLVPGPRPTA  +SVV T PLL+RSVSAAGRLGPD +PATH 
Sbjct: 774  SDKPTLKQVPAMSRPSSAPLVPGPRPTAAPISVVQTTPLLSRSVSAAGRLGPDPSPATHS 833

Query: 835  YIPQSYRNVKMGNPVGSSSPGLTHPSSSSLGP--SPAYSQQQALVSAPIFL-PQNSERID 891
            Y+PQSYRN  +GN VGSSS G TH SS S G   SP + Q   LVSAP+FL P NS+R+D
Sbjct: 834  YVPQSYRNAIIGNAVGSSSSGFTHTSSPSTGVNLSPVHVQPSTLVSAPMFLPPLNSDRVD 893

Query: 892  PNSVQSAFPFSMVTRDVLQSGHQWIESSQRDASRIVHSDPSSMANDIQNLDLYKRVPSGS 951
            PN+ QS FPF MVTRDVLQ G QW+ESSQRDASR +  DPSS+ N +QN+DLY  V SGS
Sbjct: 894  PNTHQSGFPFGMVTRDVLQDGRQWMESSQRDASRSMSGDPSSLINGMQNIDLYNPVRSGS 953

Query: 952  QEYFSNEFPAGTSGRQTQGVLVDEFPHLDIINDLLDDEHGVGMAAGASTVLQSLSNGPHT 1011
            Q ++S+EFPA TSGRQTQ  L DEFPHLDIINDLLD+EH VG AA AS V +  SNGPH 
Sbjct: 954  QVHYSSEFPACTSGRQTQSGLTDEFPHLDIINDLLDEEHAVGKAAEASRVFR--SNGPHL 1011

Query: 1012 LNRQFSFPRDISMSSDIGSSAGSCKFERTRSYHDDGFQRGYSSSVGHFDSVREFIPQATA 1071
            LNRQ                     FERTRSYHD GFQR YSSS  HFD+ RE+IPQA++
Sbjct: 1012 LNRQ---------------------FERTRSYHDGGFQRSYSSSGTHFDTPREYIPQASS 1050

Query: 1072 LPYSNGQIDGMIPTMWPMPGSDLSLMGMRNTEGEGYPYFHPEYSNMACGVNGYAVFRPSN 1131
            +PY+NG IDG+I   W M GSD+SLMGMRN +G+  PYF+PEYSNMACGVNGY VFRPSN
Sbjct: 1051 MPYANGHIDGLISNQWQMAGSDISLMGMRNADGDSSPYFNPEYSNMACGVNGYTVFRPSN 1110

Query: 1132 GH 1133
            GH
Sbjct: 1111 GH 1112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102177|ref|XP_002312577.1| predicted protein [Populus trichocarpa] gi|222852397|gb|EEE89944.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432963|ref|XP_002284428.1| PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575249|ref|XP_003555754.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|356574744|ref|XP_003555505.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|356536659|ref|XP_003536854.1| PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max] Back     alignment and taxonomy information
>gi|357439659|ref|XP_003590107.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355479155|gb|AES60358.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449432602|ref|XP_004134088.1| PREDICTED: MATH domain-containing protein At5g43560-like [Cucumis sativus] gi|449516593|ref|XP_004165331.1| PREDICTED: MATH domain-containing protein At5g43560-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297737182|emb|CBI26383.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297848652|ref|XP_002892207.1| hypothetical protein ARALYDRAFT_470409 [Arabidopsis lyrata subsp. lyrata] gi|297338049|gb|EFH68466.1| hypothetical protein ARALYDRAFT_470409 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1133
TAIR|locus:20182791082 AT1G04300 "AT1G04300" [Arabido 0.772 0.808 0.5 1.9e-234
TAIR|locus:21583871055 AT5G43560 "AT5G43560" [Arabido 0.689 0.740 0.504 1.5e-217
TAIR|locus:2156692397 AT5G52330 "AT5G52330" [Arabido 0.313 0.894 0.633 1.3e-118
TAIR|locus:504955448382 AT4G16045 "AT4G16045" [Arabido 0.075 0.225 0.735 7.6e-51
TAIR|locus:20815011115 UBP13 "ubiquitin-specific prot 0.107 0.109 0.433 1.1e-18
TAIR|locus:21441181116 UBP12 "ubiquitin-specific prot 0.107 0.109 0.433 1.4e-18
TAIR|locus:2085445330 AT3G58210 "AT3G58210" [Arabido 0.115 0.396 0.391 1.7e-15
TAIR|locus:2085355317 AT3G58250 "AT3G58250" [Arabido 0.109 0.391 0.348 1e-14
TAIR|locus:2085390298 AT3G58360 "AT3G58360" [Arabido 0.112 0.426 0.340 1.1e-12
TAIR|locus:2059536693 AT2G25330 "AT2G25330" [Arabido 0.112 0.183 0.326 3.3e-12
TAIR|locus:2018279 AT1G04300 "AT1G04300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2070 (733.7 bits), Expect = 1.9e-234, Sum P(3) = 1.9e-234
 Identities = 462/924 (50%), Positives = 562/924 (60%)

Query:     1 MAGIASEESGVGRSVEGISSGQRCQSGEALAEWRSSEQVENGXXXXXXXXXXXXXXXXXX 60
             MA    E+SGVGRS+E  S+GQ  Q+GEAL+EWRSS QVENG                  
Sbjct:     1 MAEAVDEDSGVGRSLEESSNGQHSQAGEALSEWRSSGQVENGTPSTSPSYWDIDDDDDYG 60

Query:    61 XXXXELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVAN 120
                 ELYG+YTW+I KFS+I+KRE RSN FE GGYKWYILIYPQGCDVCNHLSLFLCVAN
Sbjct:    61 LKPSELYGQYTWKIPKFSEITKREHRSNVFEAGGYKWYILIYPQGCDVCNHLSLFLCVAN 120

Query:   121 HDKLLPG--------WSHFAQFTIAVVNRDPKKSKYSDTLHRFWKKEHDWGWKKFMELSK 172
             +DKLLPG        WS FAQFTI+V+++D KKSK+SDTLHRFWKKEHDWGWKKFMEL K
Sbjct:   121 YDKLLPGSFAILEAGWSQFAQFTISVLSQDLKKSKFSDTLHRFWKKEHDWGWKKFMELPK 180

Query:   173 VSDGFKD-GDTLIIKAQVQVIREKTDRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERR 231
             + DGF D    L I+A+VQVIRE+ DRPFRCLDC YRRELVRVY  NVEQICRRFVEE+R
Sbjct:   181 LKDGFIDESGCLTIEAKVQVIRERVDRPFRCLDCGYRRELVRVYFQNVEQICRRFVEEKR 240

Query:   232 GKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEVTSTLVMD 291
              KLGRLIEDKARW+SF  FWLG+DQN+RRRM REK D ILK VVKHFF+EKEV+STLVMD
Sbjct:   241 SKLGRLIEDKARWTSFGVFWLGMDQNSRRRMCREKVDVILKGVVKHFFVEKEVSSTLVMD 300

Query:   292 SLYSGLKALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVXXXXXXXXXXXXXXXXXXP 351
             SLYSGLKALEGQ+K+ K +++LLDA+  P PIV V+ DMFV                  P
Sbjct:   301 SLYSGLKALEGQTKNMKARSRLLDAKQLPAPIVSVDKDMFVLVDDVLLLLERAALEPLPP 360

Query:   352 KDEKGPQNRTKESNSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSNKIEVAYQEAV 411
             KDEKG QNRTK+ N GE+ NK++ ERDERRLTELGRRTVEIF+L+HIFS KIEVA+QEA+
Sbjct:   361 KDEKGRQNRTKDGNDGEEVNKEADERDERRLTELGRRTVEIFILSHIFSTKIEVAHQEAI 420

Query:   412 ALKRQEELIREEEAAWLAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSM 471
             ALKRQEELIREEE AWLAE+                                      S 
Sbjct:   421 ALKRQEELIREEEEAWLAETEQRAKRGAAEREKKSKKKQAKQKRNKNKGKDKRKEEKVSF 480

Query:   472 ALSDR-LED---ENPSDEK-KEFIVEDAQPLPEKPDVLEXXXXXXXXXXGGAEVLQPDSE 526
             A   + LE+   +N +DE+ K+ + E AQ   EKPD L           G A++LQPD E
Sbjct:   481 ATHAKDLEENQNQNQNDEEEKDSVTEKAQSSAEKPDTLGDVSDISDSVDGSADILQPDLE 540

Query:   527 DRDTSPVNWDTDASEVIPPTEASSSGVCNLS-SVPNGVTEKRNAXXXXXXXXXXXXXXXX 585
             DRD+S V WDTDA E+ PP+   SS    +S S PNG+TE ++                 
Sbjct:   541 DRDSSSVLWDTDALEIHPPSSEGSSRGRGISISTPNGITEGKSHSTMDDSSSTCSNDSIR 600

Query:   586 XXXMYGPYKGNSLANYQNQKSPSRGKNQRGKSTYDGNVWATETENQPSRPAADAGEHNDI 645
                  G Y+GNSL N++NQKSP++GKNQ+ K+  D +  A+ET++QPS    D    N  
Sbjct:   601 SGVTNGSYQGNSL-NFRNQKSPNKGKNQQVKAMTDAHSLASETDDQPSTLGTDPKGQNYS 659

Query:   646 XXXXXXXXXXXXAVSSLQHQAKLPEQNVAKEEASSPQKK-SSMKDPVDTERPKEKTAAVX 704
                          VS +Q     PE +  +      +K   S+ + VD +RPKEK+ AV 
Sbjct:   660 SEASNVGESDWVVVSHIQE----PEGSRNRIPVGRERKTVQSIVNSVDMDRPKEKSTAVL 715

Query:   705 XXXXXXXXNLQSPVQLKSVPKSIATADPVPQVKSLSNGQQQTDQVA-ESCTSSPGAGVCK 763
                     N     Q K   KSI+TAD +P  K L+ G   + QV   S   S   G+ +
Sbjct:   716 SSPRNVAKNPSPLTQTKPEKKSISTADGIPNRKVLATGPPSSSQVVLPSDIQSQTVGL-R 774

Query:   764 PEIQKAAASKQTEKLMDPQVPNMSRPSSAPLVPGPRPTAPVVSV-VHTAPLLARSVSAAG 822
              ++QK +A KQ      P    +SRPSSAP++P  RP+   VS  V T   L RSVS+AG
Sbjct:   775 ADMQKLSAPKQ------PPATTISRPSSAPIIPAMRPSPITVSSSVQTTTSLPRSVSSAG 828

Query:   823 RLGPDLAPATHG---YIPQSYRNVKMGNPVXXXXXXXXXXXXXXXXXXXAYSQQQALVSA 879
             RLGPD  P+ H    Y PQSY+N  +GN +                    +     +V  
Sbjct:   829 RLGPD--PSLHNQQTYTPQSYKNAIVGNSLGSSSSSFNH-----------HPSSHGVV-- 873

Query:   880 PIFLPQNSERIDP-NSVQSAFPFS 902
             P  LP +S    P +S QS+FP+S
Sbjct:   874 PTTLPSSSYSQAPTSSYQSSFPYS 897
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2158387 AT5G43560 "AT5G43560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156692 AT5G52330 "AT5G52330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955448 AT4G16045 "AT4G16045" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081501 UBP13 "ubiquitin-specific protease 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144118 UBP12 "ubiquitin-specific protease 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085445 AT3G58210 "AT3G58210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085355 AT3G58250 "AT3G58250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085390 AT3G58360 "AT3G58360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059536 AT2G25330 "AT2G25330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X5521
hypothetical protein (1112 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1133
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 2e-35
pfam00917116 pfam00917, MATH, MATH domain 6e-22
cd03775134 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 1e-18
smart0006195 smart00061, MATH, meprin and TRAF homology 4e-17
COG50771089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 8e-10
cd03772137 cd03772, MATH_HAUSP, Herpesvirus-associated ubiqui 1e-08
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 9e-08
cd00270149 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Recept 7e-06
cd03776147 cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto 3e-04
PRK04195482 PRK04195, PRK04195, replication factor C large sub 8e-04
pfam13868349 pfam13868, Trichoplein, Tumour suppressor, Mitosta 0.002
pfam06658142 pfam06658, DUF1168, Protein of unknown function (D 0.002
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information 
 Score =  130 bits (329), Expect = 2e-35
 Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 68  GKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVC-NHLSLFLCVANHDKLLP 126
           GK+TW+I  FS++    + S  FEVGGYKW I IYP G     ++LSL+L +   +  L 
Sbjct: 1   GKHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGESGDYLSLYLELDKGESDLE 60

Query: 127 GWSHFAQFTIAVVNRDPKKS-KYSDTLHRFWKKEHDWGWKKFMELSKV-SDGFKDGDTLI 184
            WS  A+FT+ +VN++  KS   S T   F +K   WG+ KF+    +    +   D+L 
Sbjct: 61  KWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLT 120

Query: 185 IKAQVQ 190
           I+ +V+
Sbjct: 121 IEVEVK 126

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239741 cd03772, MATH_HAUSP, Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|238168 cd00270, MATH_TRAF_C, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional Back     alignment and domain information
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin Back     alignment and domain information
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168) Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1133
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.9
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.9
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.87
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.86
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.86
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.86
COG50771089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.85
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.85
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.83
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.83
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.82
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.81
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.74
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.73
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.66
smart0006195 MATH meprin and TRAF homology. 99.6
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.33
KOG18631093 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.28
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.27
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 97.67
PHA03098534 kelch-like protein; Provisional 96.66
PHA02713557 hypothetical protein; Provisional 96.56
KOG10291118 consensus Endocytic adaptor protein intersectin [S 96.29
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 96.22
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 96.22
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 95.93
PTZ00121 2084 MAEBL; Provisional 95.93
PTZ002661021 NIMA-related protein kinase; Provisional 95.81
PTZ00121 2084 MAEBL; Provisional 95.57
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 95.17
PHA02790480 Kelch-like protein; Provisional 94.63
PTZ002661021 NIMA-related protein kinase; Provisional 94.15
PRK00247429 putative inner membrane protein translocase compon 94.0
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 93.21
KOG10291118 consensus Endocytic adaptor protein intersectin [S 92.91
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 92.4
KOG4350620 consensus Uncharacterized conserved protein, conta 92.37
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 92.36
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 92.27
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 92.26
KOG2072988 consensus Translation initiation factor 3, subunit 91.29
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 91.25
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 91.08
KOG2891445 consensus Surface glycoprotein [General function p 91.05
KOG2072988 consensus Translation initiation factor 3, subunit 90.45
KOG3054299 consensus Uncharacterized conserved protein [Funct 89.81
PRK00247429 putative inner membrane protein translocase compon 89.7
CHL00118156 atpG ATP synthase CF0 B' subunit; Validated 89.64
KOG0297391 consensus TNF receptor-associated factor [Signal t 89.43
TIGR03321246 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. 89.35
PRK13428445 F0F1 ATP synthase subunit delta; Provisional 89.11
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 88.95
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 88.67
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 88.36
PF07946321 DUF1682: Protein of unknown function (DUF1682); In 88.35
PRK14474250 F0F1 ATP synthase subunit B; Provisional 87.67
PRK14472175 F0F1 ATP synthase subunit B; Provisional 87.52
PRK14471164 F0F1 ATP synthase subunit B; Provisional 87.5
PRK13453173 F0F1 ATP synthase subunit B; Provisional 87.26
PRK09174204 F0F1 ATP synthase subunit B'; Validated 87.26
PRK06231205 F0F1 ATP synthase subunit B; Validated 87.08
PRK13454181 F0F1 ATP synthase subunit B'; Provisional 86.97
PRK08475167 F0F1 ATP synthase subunit B; Validated 86.68
PRK07352174 F0F1 ATP synthase subunit B; Validated 86.32
KOG3809583 consensus Microtubule-binding protein MIP-T3 [Cyto 86.22
PRK13455184 F0F1 ATP synthase subunit B; Provisional 85.77
PRK07353140 F0F1 ATP synthase subunit B'; Validated 85.61
PRK13460173 F0F1 ATP synthase subunit B; Provisional 85.11
PRK14475167 F0F1 ATP synthase subunit B; Provisional 84.78
PRK06569155 F0F1 ATP synthase subunit B'; Validated 84.77
CHL00019184 atpF ATP synthase CF0 B subunit 84.61
PF06098291 Radial_spoke_3: Radial spoke protein 3; InterPro: 84.35
PRK14473164 F0F1 ATP synthase subunit B; Provisional 84.06
KOG3054299 consensus Uncharacterized conserved protein [Funct 84.02
PRK09510387 tolA cell envelope integrity inner membrane protei 83.09
KOG2891445 consensus Surface glycoprotein [General function p 82.57
PRK08476141 F0F1 ATP synthase subunit B'; Validated 82.51
COG3064387 TolA Membrane protein involved in colicin uptake [ 82.23
PF09727192 CortBP2: Cortactin-binding protein-2; InterPro: IP 82.15
PRK13461159 F0F1 ATP synthase subunit B; Provisional 82.08
PRK06568154 F0F1 ATP synthase subunit B; Validated 81.93
KOG2357440 consensus Uncharacterized conserved protein [Funct 81.7
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 80.86
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information 
Probab=99.90  E-value=3.3e-23  Score=203.08  Aligned_cols=125  Identities=26%  Similarity=0.493  Sum_probs=106.0

Q ss_pred             ccEEEEEEccccccCCCeeeCCceeecCeEEEEEEEeCCCCC----CCeEEEEEEEecCCCCCCCCeEEEEEEEEEEeCC
Q 001172           67 YGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDV----CNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNRD  142 (1133)
Q Consensus        67 tGshtwkIdNFS~LKge~I~Sp~FsVGGhkWRI~~YPnG~~~----~dyLSLYLeL~s~~sl~p~WsV~AqFtf~LLNQd  142 (1133)
                      +++|+|+|.|||.+ ++.++|+.|.||||+|+|++||+|+..    .+||||||+|.... ....|++.|+|+|+|+|++
T Consensus         2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~   79 (137)
T cd03772           2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK   79 (137)
T ss_pred             CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence            58999999999998 678999999999999999999999642    48999999997643 2347999999999999997


Q ss_pred             CC-CceecccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEee
Q 001172          143 PK-KSKYSDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIR  193 (1133)
Q Consensus       143 Gk-~S~skes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIk  193 (1133)
                      +. +.......|.|......|||.+||+|++|+   ++||+||+|+|+|+|+|-+
T Consensus        80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~  134 (137)
T cd03772          80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA  134 (137)
T ss_pred             CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence            43 333334557887667899999999999995   7999999999999999865

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B Back     alignment and domain information
>PRK13428 F0F1 ATP synthase subunit delta; Provisional Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PRK14474 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14472 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14471 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK13453 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK09174 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK06231 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK13454 F0F1 ATP synthase subunit B'; Provisional Back     alignment and domain information
>PRK08475 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>PRK07352 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton] Back     alignment and domain information
>PRK13455 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK07353 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>PRK13460 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK14475 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK06569 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>CHL00019 atpF ATP synthase CF0 B subunit Back     alignment and domain information
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences Back     alignment and domain information
>PRK14473 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG2891 consensus Surface glycoprotein [General function prediction only] Back     alignment and domain information
>PRK08476 F0F1 ATP synthase subunit B'; Validated Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1) Back     alignment and domain information
>PRK13461 F0F1 ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK06568 F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>KOG2357 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1133
2f1z_A522 Crystal Structure Of Hausp Length = 522 1e-07
2f1x_A161 Crystal Structure Of The Traf-Like Domain Of HauspU 2e-07
2f1y_A159 Crystal Structure Of The Traf-Like Domain Of HauspU 2e-07
2f1w_A158 Crystal Structure Of The Traf-Like Domain Of HauspU 4e-07
1yy6_A155 The Crystal Strucure Of The N-Terminal Domain Of Ha 4e-07
2xxn_A143 Structure Of The Virf4-Hausp Traf Domain Complex Le 8e-07
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure 
Iteration: 1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 11/129 (8%)
Query: 70  YTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCNH---LSLFL-CVANHDKLL 125
           + + +E+FS++S+  L    F V    W I++ P+      H   +  FL C A  D   
Sbjct: 33  FQFTVERFSRLSESVLSPPCF-VRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDS-- 89
Query: 126 PGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSD---GFKDGD 181
             WS  AQ  + ++N RD +KS      H F+ KE+DWG+  FM  S+V+D   GF D D
Sbjct: 90  TSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDD 149
Query: 182 TLIIKAQVQ 190
            +  +  VQ
Sbjct: 150 KVTFEVFVQ 158
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A P53 Peptide Length = 161 Back     alignment and structure
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Bound To A Mdm2 Peptide Length = 159 Back     alignment and structure
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7 Length = 158 Back     alignment and structure
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7 Complexed With An Ebna1 Peptide Length = 155 Back     alignment and structure
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex Length = 143 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1133
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-39
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 9e-30
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-27
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 4e-25
1d00_A168 Tumor necrosis factor receptor associated protein 2e-24
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 5e-24
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 1e-23
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 9e-22
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-08
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
 Score =  141 bits (357), Expect = 4e-39
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 52  DTDDDDDGWPKPSELYGKYTWRIEKFSQISKRELRSNAFEVGGYKWYILIYPQGCDVCN- 110
           + D +DD           + + +E+FS++S+  + S    V    W I++ P+       
Sbjct: 6   EEDMEDD---TSWRSEATFQFTVERFSRLSES-VLSPPCFVRNLPWKIMVMPRFYPDRPH 61

Query: 111 --HLSLFLCVANHDKLLPGWSHFAQFTIAVVN-RDPKKSKYSDTLHRFWKKEHDWGWKKF 167
              +  FL   N +     WS  AQ  + ++N RD +KS      H F+ KE+DWG+  F
Sbjct: 62  QKSVGFFL-QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNF 120

Query: 168 MELSKVSD---GFKDGDTLIIKAQVQV 191
           M  S+V+D   GF D D +  +  VQ 
Sbjct: 121 MAWSEVTDPEKGFIDDDKVTFEVFVQA 147
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1133
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.94
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.93
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.92
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.89
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.89
1d00_A168 Tumor necrosis factor receptor associated protein 99.88
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.88
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.88
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.87
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.85
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 98.9
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 98.13
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 97.83
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.51
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.13
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.12
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.1
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 97.09
3b84_A119 Zinc finger and BTB domain-containing protein 48; 97.06
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 97.01
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.0
2vpk_A116 Myoneurin; transcription regulation, transcription 96.84
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 96.82
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 96.73
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 96.58
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 96.56
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 96.32
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 96.3
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 95.54
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 94.73
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=2e-35  Score=319.30  Aligned_cols=266  Identities=23%  Similarity=0.355  Sum_probs=212.9

Q ss_pred             cccEEEEEEccccccC---CCeeeCCceeecCe---EEEEEEEeCCCCC--CCeEEEEEEEecCCCCCCCCeEEEEEEEE
Q 001172           66 LYGKYTWRIEKFSQIS---KRELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIA  137 (1133)
Q Consensus        66 ~tGshtwkIdNFS~LK---ge~I~Sp~FsVGGh---kWRI~~YPnG~~~--~dyLSLYLeL~s~~sl~p~WsV~AqFtf~  137 (1133)
                      ..|+|+|+|.|||.++   ++.++|++|.+|||   +|+|++||+|.+.  .+||||||.|....    .|.|+|+|+|+
T Consensus         5 ~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~----~~~v~a~~~~~   80 (312)
T 3hqi_A            5 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFS   80 (312)
T ss_dssp             EEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECC----C-CEEEEEEEE
T ss_pred             EEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCC----CCcEEEEEEEE
Confidence            4689999999999996   68899999999996   9999999999753  68999999998653    58999999999


Q ss_pred             EEeCCCCCcee--cccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEeeccCCCCcccccccccccee
Q 001172          138 VVNRDPKKSKY--SDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKTDRPFRCLDCQYRRELV  212 (1133)
Q Consensus       138 LLNQdGk~S~s--kes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~~~~~r~ld~dskk~tI  212 (1133)
                      |+|++|.....  ....++|.. +.+|||.+||+|++|+   ++||+||+|+|+|+|+|+++.....     .......+
T Consensus        81 l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~-----~~~~~~~~  154 (312)
T 3hqi_A           81 ILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNIS-----GQNTMNMV  154 (312)
T ss_dssp             EECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEE-----CCCCCSSC
T ss_pred             EEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccc-----cccccccc
Confidence            99998865432  245688875 4689999999999996   4899999999999999997642211     11223467


Q ss_pred             eecCCchHHHHhhhhhHHHhhHHHHHhhhccccccchhhhccCHHHHhhhccccchhhhhhhhhhhcchhhh---hhhHH
Q 001172          213 RVYLTNVEQICRRFVEERRGKLGRLIEDKARWSSFCAFWLGIDQNARRRMSREKTDAILKVVVKHFFIEKEV---TSTLV  289 (1133)
Q Consensus       213 ~VPpSNLgaTC~~fved~~~hLG~LLqS~~~~ssFRaf~~a~~~~~r~~m~~e~sDVilkV~~k~Ff~~keV---tSplv  289 (1133)
                      .||++++..           +|+.|++++.                       .+||+|.|.+++|++||.|   +||+|
T Consensus       155 ~~p~~~l~~-----------~l~~l~~~~~-----------------------~~Dv~l~v~~~~f~~Hk~vLaa~S~~F  200 (312)
T 3hqi_A          155 KVPECRLAD-----------ELGGLWENSR-----------------------FTDCCLCVAGQEFQAHKAILAARSPVF  200 (312)
T ss_dssp             CCCCCCHHH-----------HHHHHHHTTC-----------------------SCCEEEEETTEEEEECHHHHHHHCHHH
T ss_pred             CCCCchHHH-----------HHHHHHhCCC-----------------------CCceEEEECCEEEeHHHHHHHHcCHHH
Confidence            899999988           9999998765                       3999999999999999977   78988


Q ss_pred             HHHHhhccc----------ccccccccccccccccccCCCCCCceEeecceeeehhhHHHHHHHhhcCCCCCCCCCCCcc
Q 001172          290 MDSLYSGLK----------ALEGQSKSKKTKAKLLDAEDTPPPIVHVENDMFVLVDDVLLLLERAALEPLPPKDEKGPQN  359 (1133)
Q Consensus       290 md~L~~glk----------~le~~t~~~k~~~~~~~t~e~p~~~~~v~~d~~~l~~Dll~~leR~al~~Lp~~d~~~~q~  359 (1133)
                      .+.++++|+          ++++..  ++.+++++|++.++...        ..+.+||.+++++.++.|..   .|.+.
T Consensus       201 ~~~f~~~~~e~~~~~i~l~~~~~~~--f~~~L~~iYt~~~~~~~--------~~~~~ll~~A~~~~~~~l~~---~c~~~  267 (312)
T 3hqi_A          201 SAMFEHEMEESKKNRVEINDVEPEV--FKEMMCFIYTGKAPNLD--------KMADDLLAAADKYALERLKV---MCEDA  267 (312)
T ss_dssp             HHHTTC-----CCSEEEECSSCHHH--HHHHHHHHHHSCCTTHH--------HHHHHHHHHHHHTTCHHHHH---HHHHH
T ss_pred             HHHhccCccccCCceEEecCCCHHH--HHHHHHhhcCCCCCChH--------HHHHHHHHHHHHhCHHHHHH---HHHHH
Confidence            887766553          344443  88889999999876432        25789999999999999986   69888


Q ss_pred             ccccCCCCCCcccchhH-----HHHHHhhHHhhhHHHHHH
Q 001172          360 RTKESNSGEDFNKDSIE-----RDERRLTELGRRTVEIFV  394 (1133)
Q Consensus       360 ~~~~~~~~~dvs~dtve-----~ee~~~~Elgrr~~~ifa  394 (1133)
                      +.+.      ++.+++.     .+.|+|.+|+.+|++++.
T Consensus       268 l~~~------~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~  301 (312)
T 3hqi_A          268 LCSN------LSVENAAEILILADLHSADQLKTQAVDFIN  301 (312)
T ss_dssp             HHTT------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHcc------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            8876      5555554     289999999999999987
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1133
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 4e-25
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 1e-22
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 3e-22
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 1e-21
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.9 bits (248), Expect = 4e-25
 Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 16/144 (11%)

Query: 68  GKYTWRIEKFSQISK---RELRSNAFEVGG---YKWYILIYPQGCDVCN--HLSLFLCVA 119
             Y W I  FS   +     ++S+ F  G     KW + + P+G D  +  +LSL+L + 
Sbjct: 5   FSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLV 64

Query: 120 NHDKLLPGWSHFAQFTIAVVNRDPKKSKY-SDTLHRFWKKEHDWGWKKFMELSKVSD--- 175
           +  K        A+F  +++N   +++K         + +  DWG+KKF+    + D   
Sbjct: 65  SCPK----SEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 176 GFKDGDTLIIKAQVQVIREKTDRP 199
           G    D L +  +V V+++  +  
Sbjct: 121 GLLPDDKLTLFCEVSVVQDSVNIS 144
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1133
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.86
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.86
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.86
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.85
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 95.84
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 95.71
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 80.49
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-22  Score=194.47  Aligned_cols=127  Identities=25%  Similarity=0.483  Sum_probs=106.1

Q ss_pred             cccEEEEEEccccccCC---CeeeCCceeecCe---EEEEEEEeCCCCC--CCeEEEEEEEecCCCCCCCCeEEEEEEEE
Q 001172           66 LYGKYTWRIEKFSQISK---RELRSNAFEVGGY---KWYILIYPQGCDV--CNHLSLFLCVANHDKLLPGWSHFAQFTIA  137 (1133)
Q Consensus        66 ~tGshtwkIdNFS~LKg---e~I~Sp~FsVGGh---kWRI~~YPnG~~~--~dyLSLYLeL~s~~sl~p~WsV~AqFtf~  137 (1133)
                      ...+|+|+|.|||.++.   ++++|+.|.+|||   +|+|++||+|...  .+||||||.+....    .|.|.++|+|.
T Consensus         3 ~~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~----~~~v~~~~~~~   78 (146)
T d2cr2a1           3 VKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFS   78 (146)
T ss_dssp             EEEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCS----SSEEEEECEEE
T ss_pred             eEEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCC----CceEEEEEEEE
Confidence            35789999999998863   6899999999885   7999999999764  67999999998654    59999999999


Q ss_pred             EEeCCCCCcee-cccceecccCCCCcccccceeccccc---cCCccCCEEEEEEEEEEeeccC
Q 001172          138 VVNRDPKKSKY-SDTLHRFWKKEHDWGWKKFMELSKVS---DGFKDGDTLIIKAQVQVIREKT  196 (1133)
Q Consensus       138 LLNQdGk~S~s-kes~h~FsskesdWGfskFIkrsdLE---sGFLvDDsLTIeCdVtVIkd~~  196 (1133)
                      |+|+++.+... ....+.|...+.+|||.+||++++|+   +|||+||+|+|+|+|+|+++..
T Consensus        79 l~n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~  141 (146)
T d2cr2a1          79 ILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSV  141 (146)
T ss_dssp             EECTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSC
T ss_pred             EEcCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCC
Confidence            99998765432 23344444456889999999999996   5899999999999999998753
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure