Citrus Sinensis ID: 001178

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130-

MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR

cccccHHHHHHHHHccccHHHHHHHHHHccccccEEccHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccCECcccccccccccccccEEECcccccccccccccccCEEEECccccccECccccccccccccCCcccccHHcccccccEECcccccEECcccccccEEccccccccEEcccccccEEEEEECccccEEEEEECccccEEEEEcccccEEccccEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEcccEEECcccccEEEEEEcccccEEEEEEECccccEEEEEcccccEEEEccccccEEEEEECccccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEccccCEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccEEEEEEEEEEEccccCEEEECccccccCEEEcccccccccCEcccccccCCcccccccccccccccCCcccccccccccccCEEEcccccccccEEEEEEEccccEEEEEEcccEEEEEEEcccccccccccccccccccccccccCEEEccccccccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEcccccccEEEEEEccccccEEEEECccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEcccccccccccEEEEEcccccEEEEEEcccEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEccccccccccccccccEEEEEEEEccccccEEEEECccccEEEEccccccccCEECcccccccccccCEEECcccccccccccc

***LSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNG**A**PVTLPVAAVAKPATYAPLGAHAVPFPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Topless-related protein 2	Transcriptional corepressor. Negative regulator of jasmonate responses.	confident	Q9LRZ0
Topless-related protein 3	Transcriptional corepressor. Negative regulator of jasmonate responses.	probable	Q84JM4

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 345-384,404-669,759-801,824-1049,1060-1092
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Template: 4AOW, chain A
Confidence level:very confident
Coverage over the Query: 339-386,401-663
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Template: 3MKQ, chain A
Confidence level:very confident
Coverage over the Query: 341-384,404-667,694-699,729-800,830-1040
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Template: 3MKQ, chain A
Confidence level:very confident
Coverage over the Query: 404-677,691-699,729-748,769-796,811-993
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Template: 2PM9, chain A
Confidence level:very confident
Coverage over the Query: 320-385,401-664
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Template: 2OAJ, chain A
Confidence level:confident
Coverage over the Query: 341-384,405-675,745,760-780,792-801,819-1051,1062-1107
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Template: 4A0P, chain A
Confidence level:confident
Coverage over the Query: 423-677,688-718,738-800,821-1048
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Template: 1UUJ, chain A
Confidence level:probable
Coverage over the Query: 5-56
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Template: 2NXP, chain A
Confidence level:probable
Coverage over the Query: 67-130
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View the model in PyMOL