Citrus Sinensis ID: 001178
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1131 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LRZ0 | 1131 | Topless-related protein 2 | yes | no | 0.996 | 0.996 | 0.774 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.977 | 0.998 | 0.708 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.979 | 0.979 | 0.629 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.969 | 0.979 | 0.627 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.968 | 0.964 | 0.618 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.247 | 0.206 | 0.270 | 1e-14 | |
| P74442 | 1191 | Uncharacterized WD repeat | N/A | no | 0.190 | 0.180 | 0.276 | 9e-12 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.185 | 0.531 | 0.268 | 2e-11 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.526 | 0.389 | 0.210 | 4e-10 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.175 | 0.591 | 0.261 | 1e-09 |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1835 bits (4752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1135 (77%), Positives = 991/1135 (87%), Gaps = 8/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS+ +FP V+T+HPQEPNQL
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA-PIFPQVITAHPQEPNQL 1076
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1131
AVGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1077 AVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1647 bits (4264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1133 (70%), Positives = 929/1133 (81%), Gaps = 27/1133 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHRLE+ESGFFFN KYF+EK LAGEWD++E YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L+NFRENEQLSKYGDT++AR IML ELKKLIEANPLFRDKL+FP+L++SRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+ PNG AP+ V PV + KPA Y LG H VPFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPH-VPFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P AAANA ALA WM A+ +S++Q++VV + +P NQ+S+LK PR P T G++DY
Sbjct: 240 PGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ DHE L KRLR + SV+E TYP P QQA WSL+DLP A +HQGS+V SM+F+P +
Sbjct: 300 NPDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQN 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG GEITLW++ RERLVS+PFKIWDMSNCS QA I K++ ISV+RVAWSPD
Sbjct: 359 TLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNFIGVAFTKHLI LY + G NDL Q EIDAHVG VNDLAF+ PN+QLC++TCGDDKLI
Sbjct: 419 GNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD+SGRK F FEGH+APVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCT MLYSADG+RLFSCGTSK+GDS LVEWNESEG++KRTY F+KK AGVVQFDT++
Sbjct: 539 GKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSK 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LA GED QIKFWDM+N+N+LTST+AEGGLP+LP LRFNK+GNLL VTTAD G KILA
Sbjct: 599 NHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILA 658
Query: 661 NADGLRALRAIETRAYETSRASTEMK-VPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
N G R+LRA+ET A ET R + K VPG+ PV S +V+R SP R S +LN
Sbjct: 659 NPAGFRSLRAMETPASETMRTPVDFKAVPGA-------PVASVNCKVERGSPVRHSQMLN 711
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G D + I +D +DK K W+L EI+DP QC +P++ S++KV +LLYTNSG
Sbjct: 712 GVDPSKSRI------DDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSG 765
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVVPC 838
GILAL SNG+Q+LWKW EQNPSGKATA V PQHWQP++GLLMTNDV N E+ PC
Sbjct: 766 AGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPC 825
Query: 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898
+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNN+IAIGMEDST
Sbjct: 826 IALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDST 885
Query: 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958
I IYNVRVDEVK+KLKGHQK ITGLAFST LNILVSSG+DAQ+ FW+ DTWEKRKS+AIQ
Sbjct: 886 IHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQ 945
Query: 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS 1018
+PAGK G+TRVQFH DQ+R+LV HETQLA++D SKMECIRQW+PQD LS+PISSA Y+
Sbjct: 946 MPAGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYA 1005
Query: 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078
CNSQLIY TF DG+IGVFDADSLRLRCRI+PSAY+ P +Q + PLVV +HPQ+PNQ
Sbjct: 1006 CNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYL----PQGNQGLSPLVVAAHPQDPNQ 1061
Query: 1079 LAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
AVGL DGSVK++EP+E E KWG+ P + + S T+N TPEQ QR
Sbjct: 1062 FAVGLNDGSVKMMEPTEGEGKWGMIPPSE------AINSPSTTSNQTPEQLQR 1108
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1451 bits (3756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1145 (62%), Positives = 870/1145 (75%), Gaps = 37/1145 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLP-VAAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDHSC PPNGARAP+PV P + + K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P A+ LAGWM ++PSS +V A + P+ + LKHPR P T +DY
Sbjct: 240 QP-TASPVPTPLAGWM--SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPP-TNASLDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWS------------LDDLPRAVACTMHQG 347
PS+D E + KR R DE V ++S DDLP+ VA T+ QG
Sbjct: 296 PSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND++FS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC++TCGDDK I+VWD +G K FEGHEAPVYSVCPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDYDAPG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD V +LT+ + +GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ + IKI+AN+DGLR L E + E+S+ + +++ + A
Sbjct: 656 LAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAI------NSIAAAAAAAATSAGHA 709
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
DRS+ +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 710 DRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
A K++RL++TNSG ILAL SN + LWKW R E+N +GKATA++ PQ WQP++G+LMTN
Sbjct: 769 A-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTN 827
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 828 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 887
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 947
Query: 946 TDTWEKRKSIAIQLPAGK--LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003
TD WEK++S + LP G+ +TRVQFH DQ LV HETQLAIY+ +K+EC++QW
Sbjct: 948 TDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWA 1007
Query: 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063
++ L +PI+ A +SC+SQL+YA+F D ++ VF + +LRLRCR+ PSAY+ + NS+
Sbjct: 1008 VRESL-APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN-- 1064
Query: 1064 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDN----CRTVTSS 1119
V PLV+ +HPQEPN AVGL+DG V + EP E+E KWGVA P +NG+ + +V +S
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124
Query: 1120 ATNNP 1124
A++ P
Sbjct: 1125 ASDQP 1129
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/1145 (62%), Positives = 867/1145 (75%), Gaps = 48/1145 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+TSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLP-VAAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDHSC PN ARAP+PV P + ++ K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P + LAGWM ++PSS +V P+ + LKHPR P + +DY
Sbjct: 240 QPTPSPV-PTPLAGWM--SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSN-SAVDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV-------PSQ-----QATWSLDDLPRAVACTMHQG 347
PS D + + KR R DE + V P Q Q + DDLP+ VA T+ QG
Sbjct: 296 PSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND+AFS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC+ TCGDDK I+VWD +G K + FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDY+APG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD + +LT+ +A+GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ D IK++AN+DGLR L +E + E+S+ P ++ V
Sbjct: 656 LAVSANDNMIKVMANSDGLRLLHTVENLSSESSK-----------------PAINSIPMV 698
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
+R + +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 699 ERPASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENM-R 756
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
+K++RL++TNSG ILAL SN + LWKW R ++N +GKATA++ PQ WQP++G+LMTN
Sbjct: 757 VTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTN 816
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 817 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 876
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 936
Query: 946 TDTWEKRKSIAIQLPAGK--LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWV 1003
TD WEK+KS +Q+P G+ + +TRVQFH DQV LV HETQLAIY+ +K+EC++QW
Sbjct: 937 TDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW- 995
Query: 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063
P ++PI+ A +SC+SQLIY +F D +I VF + +LRLRCR+ PSAY+ + NS+
Sbjct: 996 PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN-- 1053
Query: 1064 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVT----SS 1119
V PLV+ +HPQE N AVGL+DG V + EP E+E KWGVA P +NG+ + T T +S
Sbjct: 1054 VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGAS 1113
Query: 1120 ATNNP 1124
A++ P
Sbjct: 1114 ASDQP 1118
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1400 bits (3624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/1133 (61%), Positives = 855/1133 (75%), Gaps = 38/1133 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFK++VHRLE+ESGFFFNM+YFE+ AGEWD++EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT+SAR IML ELKKLIEANPLFRDKL FPSLK SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGAHAVPF 239
WQHQLCKNPRPNPDIKTLFVDH+C PNGA P+P T + +V K + PLGAH PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHG-PF 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPV-QPNQ-VSVLKHPR---APSNTL 294
P A +LAGWM P+ S+Q V+A + + PN VS+LK R P+N+L
Sbjct: 240 QPTPAPL-TTSLAGWM----PNPSVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSL 294
Query: 295 GMIDYPSSDHEQLKKRLRA---SQSVDE-------ATYPVPSQ-QATWSLDDLPRAVACT 343
M DY ++D E + KR R S V+ TYP S AT+S DDLP+ V+
Sbjct: 295 SM-DYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRI 353
Query: 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403
+ QGS++ SMDFHP T+L+VG G+I +W+VG RE+LVS+ FK+WD++ C++ LQA+
Sbjct: 354 LSQGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQAS 413
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
+ + + +V+RV WSPDG +GVA++KH++H+Y+Y G DL LEIDAH G VNDLAFS
Sbjct: 414 LASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFS 473
Query: 464 YPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522
PN+QLC+VTCG+DK I+VWD ++G KL FEGHEAPVYSVCPHQKENI FIFSTAVDGK
Sbjct: 474 QPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGK 533
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
IKAWLYDN+GSRVDYDAPG CT+M Y ADG+RLFSCGTSKEG+S +VEWNESEGA+KRT
Sbjct: 534 IKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRT 593
Query: 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642
Y+G K+S GVVQFDT +N+ L AG++ Q+KFWDMD+V++L+ST AEGGLPS P LR NK
Sbjct: 594 YLGLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINK 653
Query: 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702
EG LL V+T D GIKILANA+G R L ++ R ++SRA G V T TP S
Sbjct: 654 EGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSST 713
Query: 703 AERV---DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759
+ +RS P T LNG + + + KPR + D ++K+K W+LTEI + Q R +
Sbjct: 714 GMSLSMGERSGPVASVTGLNGDNRSLPDV-KPR-IADDAEKSKTWKLTEISERSQLRTLR 771
Query: 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819
+P++ A +V +L+YTNSG ILAL N KLWKW ++E+N GKA + V PQ WQPS
Sbjct: 772 LPDTLLPA-RVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPS 830
Query: 820 NGLLMTNDVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878
+G+LMTND E N EDVVPC ALSKNDSYVMSA GGK+SLFNMM FK MTTFM+PPPA+T
Sbjct: 831 SGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAAT 890
Query: 879 FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938
LAFHPQDNNIIAIGM+DS+IQIYNVRVDEVK+KLKGHQK +TGLAFS LN+LVSSG+D
Sbjct: 891 SLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGAD 950
Query: 939 AQLIFWNTDTWEKRKSIAIQLPAGKL--PVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
+QL W+ D WEK+ S IQ+P+G P+ TRVQFH DQ+ +LV H +QLAIY+ K+
Sbjct: 951 SQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKL 1010
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056
E ++QW+P++ S ++ A YSC+SQ IYA F DGS+ + A +L+L+CRI P++Y+
Sbjct: 1011 ENMKQWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPS- 1068
Query: 1057 SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNG 1109
N S V+P V +HP EPNQ AVGLTDG V VIEP E KWG++ P +NG
Sbjct: 1069 --NPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENG 1119
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 132/325 (40%), Gaps = 45/325 (13%)
Query: 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405
GSSV+S+ F P + G GD I +WD C+ L+
Sbjct: 966 HGSSVLSVAFSP-DGQRVASGSGDKTIKIWDTA--------------SGTCTQTLEG--- 1007
Query: 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP 465
SV VA+SPDG + I ++ S Q+LE H G V + FS P
Sbjct: 1008 --HGGSVWSVAFSPDGQRVASGSDDKTIKIWD-TASGTCTQTLE--GHGGWVQSVVFS-P 1061
Query: 466 NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC--PHQKENIHFIFSTAVDGK 522
+ Q + + DD I++WD +SG EGH V+SV P + + S ++DG
Sbjct: 1062 DGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR----VASGSIDGT 1116
Query: 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582
IK W + + G W ++ +S DG R+ S D + W+ + G +T
Sbjct: 1117 IKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIWDAASGTCTQT 1172
Query: 583 YIGFRKKSAGVVQ---FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639
G G VQ F R+ + D IK WD + + E GG + +
Sbjct: 1173 LEGH----GGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGW--VQSVA 1226
Query: 640 FNKEGNLLVVTTADQGIKILANADG 664
F+ +G + ++D IKI A G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL 448
KIWD+ +LQ +K SV V++SPDG + + L+ ++ L
Sbjct: 626 KIWDLDGN--LLQT--LKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLA--- 678
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508
+ H V+D FS P+ Q + C D + IR+WDL G + QF E + V H
Sbjct: 679 VLGGHTKSVDDAQFS-PDGQTLVSVCRDGQ-IRLWDLDGNLIRQFGLPEVAFFGVNWHPN 736
Query: 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568
N+ + A DG ++ W + + T ++++ DG +LFS + +
Sbjct: 737 GNLLAV--AADDGTVRLWTPQGE-IKATLSGHDEFVTRVVFTPDGKQLFSSSS----NGS 789
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDM----DNVNM 622
++ W+ S LK+ Y G+ + G+ + +LA G E+N +K WDM D VN+
Sbjct: 790 VIHWSTSGKMLKK-YQGYPEAIFGLAL--ASNGALLAIGAENNLVKVWDMSPKSDLVNL 845
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 17/227 (7%)
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND 459
L A I S+S + +SPDG ++G I ++ D + H G+N+
Sbjct: 98 LVAEIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINE 153
Query: 460 LAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518
FS+ + IV+C DDKL++V+D+ SGR + +GH V+ C + + I S +
Sbjct: 154 --FSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTL--IASGS 209
Query: 519 VDGKIKAWLYDNVGSRVDYDAPGLW--CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576
D I+ W N G+ + + PG +++ ++ DG+ L S D + W+ +
Sbjct: 210 FDETIRIWCARN-GNTI-FSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTT 263
Query: 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
G +T I V+F ILA+ +N +K WD + +L
Sbjct: 264 GTCVKTLIDEEHPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 143/680 (21%), Positives = 266/680 (39%), Gaps = 85/680 (12%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SV+++ F P L G G + W+ +E L K W
Sbjct: 866 SVLTVAFSP-DGKLFATGDSGGIVRFWEAATGKELLTCKGHNSW---------------- 908
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
V+ V +S DG + + L+ L H V + FS PN
Sbjct: 909 ----VNSVGFSQDGKMLASGSDDQTVRLWDISSGQCL---KTFKGHTSRVRSVVFS-PNS 960
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
L + + D+ +R+WD+S G L+ F+GH VYSV + ++ + + + D ++ W
Sbjct: 961 -LMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW 1017
Query: 527 LYDNVGSRVDYDAPG-LWCT-TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584
D S+ Y G C ++++S+DG+ L S D + W+ S G T
Sbjct: 1018 --DISSSQCFYIFQGHTSCVRSVVFSSDGAML----ASGSDDQTVRLWDISSGNCLYTLQ 1071
Query: 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKE 643
G VV F + + G+D ++ WD+ + N L + + G S R L F+
Sbjct: 1072 GHTSCVRSVV-FSPDGAMLASGGDDQIVRLWDISSGNCLYTLQ---GYTSWVRFLVFSPN 1127
Query: 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703
G L ++DQ +++ + + + + T T+ + P A + + + +
Sbjct: 1128 GVTLANGSSDQIVRLW----DISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSG--DQT 1181
Query: 704 ERVDRSSPARPSTILNGADSAARGI----EKPRNLEDISDKT-KPWELTEIVDPLQCRVV 758
R+ S ++ IL G S + + SD+T + WE ++ +C
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWE----INSSKCLCT 1237
Query: 759 AMPESTDSASKV----ARLLYTNSGIGILALWS-------NGVQKLWKW-NRTEQNPSGK 806
++ S V +L + S + LW + Q W N NP G
Sbjct: 1238 FQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGS 1297
Query: 807 ATAAVAPQH----WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK-VSLFNM 861
A+ + W+ S+ + + V V S + + + S + V L+++
Sbjct: 1298 MLASGSGDQTVRLWEISSSKCL--HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSI 1355
Query: 862 MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921
+ + + TF+ + F P D I+A G D T++++++ + L+GH +
Sbjct: 1356 SSGECLYTFLGHTNWVGSVIFSP-DGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414
Query: 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
+ FS + +L S D + WN + E ++ + + + V F SD + L
Sbjct: 1415 SIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVR------SVAFSSDGLILA 1468
Query: 982 VNHETQ-LAIYDGSKMECIR 1000
+ + + ++D ECI+
Sbjct: 1469 SGSDDETIKLWDVKTGECIK 1488
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 12/210 (5%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLC 470
S+S V +SPDG ++ A I ++ G+ D ++ H G++D+A+S +K +C
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIW---GAYDGKFERTLEGHKEGISDIAWSQDSKLIC 104
Query: 471 IVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
+ DDK I++WD+ SG+ + +GH+ V+ V + + N+ I S + D ++ W +
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDVN 160
Query: 530 NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
A T + ++ DG+ + S S +G + W+ + G L T K
Sbjct: 161 TGECTKMISAHSDPVTGVHFNRDGTLVVS--GSYDGTVRI--WDTTTGQLLNTISTEDGK 216
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619
V+F +LA DN ++ W +N
Sbjct: 217 EVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1131 | ||||||
| 22331124 | 1131 | Topless-related 2 protein [Arabidopsis t | 0.996 | 0.996 | 0.774 | 0.0 | |
| 7939576 | 1161 | unnamed protein product [Arabidopsis tha | 0.995 | 0.969 | 0.774 | 0.0 | |
| 297830294 | 1131 | hypothetical protein ARALYDRAFT_479149 [ | 0.996 | 0.996 | 0.772 | 0.0 | |
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.992 | 0.996 | 0.759 | 0.0 | |
| 297804604 | 1125 | predicted protein [Arabidopsis lyrata su | 0.993 | 0.999 | 0.767 | 0.0 | |
| 225450677 | 1132 | PREDICTED: topless-related protein 3 [Vi | 0.996 | 0.995 | 0.773 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.996 | 0.762 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.993 | 0.996 | 0.755 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.995 | 0.757 | 0.0 | |
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 0.996 | 0.995 | 0.764 | 0.0 |
| >gi|22331124|ref|NP_188306.2| Topless-related 2 protein [Arabidopsis thaliana] gi|302393776|sp|Q9LRZ0.2|TPR2_ARATH RecName: Full=Topless-related protein 2 gi|332642350|gb|AEE75871.1| Topless-related 2 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1835 bits (4752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1135 (77%), Positives = 991/1135 (87%), Gaps = 8/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS+ +FP V+T+HPQEPNQL
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA-PIFPQVITAHPQEPNQL 1076
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1131
AVGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1077 AVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7939576|dbj|BAA95777.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1834 bits (4750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1134 (77%), Positives = 990/1134 (87%), Gaps = 8/1134 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS+ +FP V+T+HPQEPNQL
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA-PIFPQVITAHPQEPNQL 1076
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQ 1130
AVGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q Q
Sbjct: 1077 AVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQ 1130
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830294|ref|XP_002883029.1| hypothetical protein ARALYDRAFT_479149 [Arabidopsis lyrata subsp. lyrata] gi|297328869|gb|EFH59288.1| hypothetical protein ARALYDRAFT_479149 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1832 bits (4745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1135 (77%), Positives = 991/1135 (87%), Gaps = 8/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P A NANALAGWM N NPSSS+ S VVAAS P+QP+QV+VLKHPRAPSN+LG++DY
Sbjct: 241 PSPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNVLKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
++DHEQL KRLR++Q+ +E TYP S T SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QNADHEQLMKRLRSAQTSNEVTYPAHSH-PTASLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKS GVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSPGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQ+KFWDMDN N+LT+ EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQVKFWDMDNTNLLTTVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ T+I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAYEARSFEASKASIDMKVSPSAMATSISPAVGKIEHMDTDSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+K ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDPV-DKSKTLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW+R EQNP+GKATA+V P HWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWSRNEQNPTGKATASVTPHHWQPNSGLLMANDVPENPEGAVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS IQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSVIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQD LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQDALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS+ + P V+T+HPQEPNQL
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA-LIIPHVITTHPQEPNQL 1076
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1131
AVGL+DGSVKV+EPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1077 AVGLSDGSVKVLEPSELSRRWGVGVAASSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1808 bits (4683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1135 (75%), Positives = 989/1135 (87%), Gaps = 12/1135 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHRLE+ESGF+FNMKYFE+K AGEW+E+EKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKLVFP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF+DH+CSPPNG APTPV LPVA KPA YAPLGAH+ PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHS-PFP 236
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P A ANANALAGWM NA+ SSS+Q++VV ASS+PV NQVS+LKH R P + GM+DY
Sbjct: 237 PTGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQ 296
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ +H+QL KRLR++QSV+E TYP P QQA+WS++DLPR VA T+HQGS+V SMDFHP HH
Sbjct: 297 NPEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHH 356
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GE+TLW++G+RERL+SKPFK+WD+S+ S+ QAAIVKD+ ISVSRV WSPD
Sbjct: 357 TLLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPD 416
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G F+GVAFTKHL+HLY+Y SN+L Q EIDAHVGGVNDLAF++PNKQLC+VTCG+DKLI
Sbjct: 417 GTFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLI 476
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD+ GRKLF FEGHEA VYS+CPH KENI FIFSTA+DGKIKAWLYD++GSRVDYDAP
Sbjct: 477 KVWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAP 536
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADGSRLFSCGTSK+GDS+LVEWNESEGA+KRTY+GFRKKS GVVQFDTT+
Sbjct: 537 GKWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQ 596
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LA GED+QIKFWDMDNVN+LT T+AEGGLPSLPRLRFNKEGNLL VTT D G KILA
Sbjct: 597 NHFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILA 655
Query: 661 NADGLRALRAIE-TRAYETSRASTE--MKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA G+R+L+AIE T +E R+ E +KV G + V +++PV K V+RSSP RP +I
Sbjct: 656 NAVGMRSLKAIESTTPFEALRSPMESALKVSGPSAVASVSPVNCK---VERSSPVRPPSI 712
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
+NG + R ++K R +ED DK KPW+L EIVDP CR+V MP++ DS+ KV RLLYTN
Sbjct: 713 INGVEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTN 772
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV-PENAEDVV 836
SG+G+LAL SNG+QKLWKW R EQNPSGKATA V PQHWQP++GLLMTNDV N E+ V
Sbjct: 773 SGVGLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAV 832
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMED
Sbjct: 833 PCIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMED 892
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSG+DAQL W+ DTWEKRKSI
Sbjct: 893 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSIT 952
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQ+AIYD SKM+ IRQWVPQD L +PIS AA
Sbjct: 953 IQLPAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAA 1012
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEP 1076
YSCNSQL+YATF DG++GVFDAD+LRLRCRIAPS Y+ A NSSQ ++PLVV +HP +P
Sbjct: 1013 YSCNSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLNSSQAIYPLVVATHPLDP 1072
Query: 1077 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
NQLA+GL+DGSVKVIEP+E+E KWGV+ P+DNG N RT +SS T+N TP+Q QR
Sbjct: 1073 NQLAIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNHTPDQIQR 1127
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804604|ref|XP_002870186.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316022|gb|EFH46445.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1802 bits (4667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1132 (76%), Positives = 986/1132 (87%), Gaps = 8/1132 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESG+FFN+KYFEEKAL GEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGYFFNLKYFEEKALLGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFREN+QLSKYGDT+SAR IML EL+KLIEANPLFR+KL P+ K SRLRTLINQSLN
Sbjct: 121 LENFRENDQLSKYGDTKSARGIMLGELRKLIEANPLFREKLALPTFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPF- 239
WQHQLCKNPRPNPDIKTLF DH+CSP NGARAPTPV LPV AVAKP+TYAPLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPQNGARAPTPV-LPVGAVAKPSTYAPLGVHGGPFQ 239
Query: 240 PPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P + A NANALAGWM N NPSSS+ VVA+S P+QPNQV++LKHPR PSN+LGM+DY
Sbjct: 240 PTSAPAPNANALAGWMANPNPSSSVPGGVVASSPFPMQPNQVAMLKHPRPPSNSLGMMDY 299
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR+ + DE TYP SQ T SLDDLPR V TM QGS+V SMDFHP H
Sbjct: 300 QSADHEQLMKRLRSGPTGDEVTYPAHSQ-PTASLDDLPRNVVSTMRQGSAVTSMDFHPSH 358
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE TLW+VG RE+L ++PFKIW+M++CS++ Q +IVKD S+SVSRV+WSP
Sbjct: 359 HTLLTVGCSSGEFTLWEVGSREKLFTEPFKIWNMASCSVIFQGSIVKDPSVSVSRVSWSP 418
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGNFIGVAF+KHLIH+Y+YQGS +L Q LE+DAHVG V+DLAF++PNKQLCIVTCG+DKL
Sbjct: 419 DGNFIGVAFSKHLIHIYSYQGS-ELRQHLEMDAHVGCVHDLAFAHPNKQLCIVTCGEDKL 477
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KL+ FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 478 IKVWDLSGKKLYTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 537
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGA+KRTY+GFRKKS G VQFDTT
Sbjct: 538 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRTYLGFRKKSTGSVQFDTT 597
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR +A GEDNQ+KFWDMDN N+LT+ EA+GGLPSLPRLRFNKEGNLL V+TAD G KIL
Sbjct: 598 RNRFMAVGEDNQVKFWDMDNTNILTTVEADGGLPSLPRLRFNKEGNLLAVSTADNGFKIL 657
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LR +E R++E SRAST+MKV SA+VT I P + K E++D SPARP+ I N
Sbjct: 658 ANGDGLRTLRVMEARSFEASRASTDMKVSSSAMVTNIGPSIGKMEQMDIGSPARPTPIPN 717
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G D+ +R +E PRN+E + +K+KP EL EIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 718 GVDAMSRTMENPRNVESV-EKSKPSELMEIVDPAQCRQVTMPDSKDSVSKVARLLYTNSG 776
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+GILAL +NGVQ+LWKW+R+EQNP+GKATA+V PQHWQP++GLLMTNDVPEN E VPC+
Sbjct: 777 VGILALGTNGVQRLWKWSRSEQNPTGKATASVTPQHWQPNSGLLMTNDVPENPEGTVPCI 836
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDSTI
Sbjct: 837 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 896
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFS LNILVSSG+DAQL FW+ D+WEK+KS AIQL
Sbjct: 897 HIYNVRVDEVKTKLKGHQKHITGLAFSATLNILVSSGADAQLFFWSADSWEKKKSSAIQL 956
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
PAGK PVG+TRVQFH+DQV LLV+H+TQ+AIYDGSKMECI++WVPQ+ LSSPI+ A+YSC
Sbjct: 957 PAGKSPVGDTRVQFHNDQVHLLVSHDTQIAIYDGSKMECIQKWVPQESLSSPITCASYSC 1016
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NS L+YA+F DGSIGVFDA+ LRLRCRI PSAYM Q + NS+ + PLV+T+HPQEPNQ+
Sbjct: 1017 NSHLVYASFADGSIGVFDAEYLRLRCRIGPSAYMPQPTSNSA-PIMPLVITAHPQEPNQI 1075
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
AVGL+DGSVKV+E E R+WGV GT+N R ++SA NN +Q QR
Sbjct: 1076 AVGLSDGSVKVLETPEPFRRWGVVEKA--GTENGRPSSASAANNSGSDQIQR 1125
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450677|ref|XP_002283157.1| PREDICTED: topless-related protein 3 [Vitis vinifera] gi|296089734|emb|CBI39553.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1799 bits (4659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1136 (77%), Positives = 994/1136 (87%), Gaps = 9/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEWDE+EKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWDEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAVEILV DL+VFSTFNE+L+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVTDLRVFSTFNEDLYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKLVFP+LK+SRLRTLINQSLN
Sbjct: 121 LGNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+P NGA TPV LPVAAVAKPA + LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPSNGALGATPVNLPVAAVAKPAAFTSLGTHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
PA AAANA+ALAGWM NA SS++Q+SVV ASS+P+ PNQVS+LK P P TLGM+DY
Sbjct: 240 PAAAAANASALAGWMANAAASSTVQASVVTASSMPMPPNQVSILKRPITPPATLGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ + EQL KRLR +Q+V+E TYP QQA+WSLDDLPR VA TM QGS+V SMDFHP HH
Sbjct: 300 NLEQEQLMKRLRLAQNVEEVTYPASRQQASWSLDDLPRMVAFTMQQGSTVTSMDFHPSHH 359
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG G+G+ITLW+V LRERLV+K FKIWD++ CS+ +QA+I KD+SI VSRVAWSPD
Sbjct: 360 TLLLVGSGNGDITLWEVALRERLVTKQFKIWDVTACSLPVQASIAKDASIPVSRVAWSPD 419
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNFIGVAFTKHLIHLY Y GSN+L Q LEIDAHVG VND+AF++PNKQLC+VTCGDDKLI
Sbjct: 420 GNFIGVAFTKHLIHLYAYTGSNELRQHLEIDAHVGCVNDIAFAHPNKQLCVVTCGDDKLI 479
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD++GRKLF FEGHEAPVYS+CPH KE+I FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 480 KVWDMNGRKLFNFEGHEAPVYSICPHHKESIQFIFSTAMDGKIKAWLYDNIGSRVDYDAP 539
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
GLWCTTMLYSADGSRLFSCGTSK+GDS LVEWNESEGA+KRTY GFRKKSAGVVQFDTT+
Sbjct: 540 GLWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
N LAAGEDNQIKFWDMDNVN+L S +A+GGLPS+PRLRFNKEGNLL VTTAD G KILA
Sbjct: 600 NHFLAAGEDNQIKFWDMDNVNVLASIDADGGLPSVPRLRFNKEGNLLAVTTADNGFKILA 659
Query: 661 NADGLRALRAIETRAYETSRASTE---MKVPG-SAVVTTITPVLSKAERVDRSSPARPST 716
A GLR+LRAIET ++E R E +KV G SA I+P +V+RSSP +PS+
Sbjct: 660 TAAGLRSLRAIETPSFEALRTPVEASALKVAGTSATAANISP---NEPKVERSSPIKPSS 716
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D+AAR EKPR+LED++D++KPW+L EIV+P QCR V M +++DS+SKV+RLLYT
Sbjct: 717 ILNGVDTAARSTEKPRSLEDVTDRSKPWQLAEIVEPGQCRQVTMSDNSDSSSKVSRLLYT 776
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NSG+GILAL SNGVQKLWKW R +QNPSGKAT+ V PQHWQP++GLLMTNDV N E+
Sbjct: 777 NSGVGILALGSNGVQKLWKWFRNDQNPSGKATSNVVPQHWQPNSGLLMTNDVSGVNPEEA 836
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFMSPPPASTFLAFHPQDNNIIAIGME
Sbjct: 837 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 896
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK +TGLAFST+LNILVSSG+DAQL W+ DTWEKRKS+
Sbjct: 897 DSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTSLNILVSSGADAQLCMWSIDTWEKRKSV 956
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
+IQ+PAGK P+G+TRVQFHSDQ+RLLV HETQLA YD SKME IRQW+PQD LS+PIS A
Sbjct: 957 SIQMPAGKAPIGDTRVQFHSDQIRLLVFHETQLATYDASKMERIRQWIPQDGLSAPISYA 1016
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE 1075
AYSCNSQLIYATF DG+IGVFDADSLRLRCRIAPSAY+SQA N SQ +P+VV SHPQE
Sbjct: 1017 AYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSAYLSQAGLNGSQPPYPVVVASHPQE 1076
Query: 1076 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
NQLAVGLTDGSVKVIEP E+E KWGV+ P +NG RT +SS T+N TP+Q QR
Sbjct: 1077 SNQLAVGLTDGSVKVIEPPESEGKWGVSPPAENGILITRTASSSTTSNHTPDQIQR 1132
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1789 bits (4634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1135 (76%), Positives = 980/1135 (86%), Gaps = 9/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+AKAVEILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL+FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+PPNG APTP+ LP+AAVAKPATY PLGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
PA A ANANALAGWM NA+ SSS+Q++VV AS++PV NQ PR P GM+DY
Sbjct: 240 PAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
++DH+QL KRLR SV+E +YP+ ++QA+WSLDDLPR V T+HQGSSV SMDFHP HH
Sbjct: 300 NADHDQLMKRLRPGHSVEEVSYPL-ARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHH 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GEITLW++ LRE+LVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSPD
Sbjct: 359 TLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G+F+G+AFTKHLIHLY GSN+L Q +E+DAHVGGVNDLAF++PNKQLCIVTCGDDKLI
Sbjct: 419 GSFVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWDL+GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADG+RLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT+
Sbjct: 539 GHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQ 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
NR LAAGED Q+KFWDMDN+N+L STEA+GGL SLPRLRFNKEGN+L VTT D G KILA
Sbjct: 599 NRFLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILA 658
Query: 661 NADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA GLR+LR IET A+E R+ ST +KV + ++PV K V+RSSP RPS I
Sbjct: 659 NASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCK---VERSSPVRPSPI 715
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
LNG D R +EKPR +ED++D+ KPW+L+EI+DP+QCR V MPESTDS+SKV RLLYTN
Sbjct: 716 LNGVDPMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTN 775
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVV 836
S +GILAL SNG+QKLWKW R+E NP+GKATA V P HWQP+NGLLMTND+ N E+ V
Sbjct: 776 SAVGILALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAV 835
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGM+D
Sbjct: 836 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDD 895
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DA L W+ DTWEKRK+I
Sbjct: 896 STIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIP 955
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYD SKME IRQWVPQDVLS+PIS AA
Sbjct: 956 IQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAA 1015
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEP 1076
YSCNSQLIYATF D +IGVFDADSLRLRCRIAPS +S A+ + SQ V+PLVV +HP EP
Sbjct: 1016 YSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEP 1075
Query: 1077 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
NQ AVGLTDGSVKVIEP+E+E KWG P DNG N RT +SS T+N T +Q QR
Sbjct: 1076 NQFAVGLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1130
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1787 bits (4628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1135 (75%), Positives = 978/1135 (86%), Gaps = 11/1135 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFLDEEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVEILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF+DH+CSP NG APTPV LP++AVAKP Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P VA ANANALAGWM NA+ SSS+Q++VV +S++PV NQVS+LK PR P T G++DY
Sbjct: 240 PNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
++DHEQL KRLR SV+E +YPV ++QA+WSLDDLPR VA T+HQGSSV S+DFHP HH
Sbjct: 300 NTDHEQLMKRLRPGHSVEEVSYPV-ARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHH 358
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GEITLW++ LRERLVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSPD
Sbjct: 359 TLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPD 418
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
GNF+GVAFTKHLIHLY Y GSN+L Q +E+DAHVGGVNDL+F+ PNKQLCIVTCGDDKLI
Sbjct: 419 GNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLI 478
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWD +GR+LF FEGH+APVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDAP
Sbjct: 479 KVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAP 538
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
G WCTTMLYSADGSRLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT+
Sbjct: 539 GHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQ 598
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660
NR L AGED Q+KFWDMDN+N+L ST+A+GGL LPRL+FNKEGN+L VTT D G KI+A
Sbjct: 599 NRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMA 658
Query: 661 NADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717
NA GLR+LR IET A+E R+ ST +KV GS+ ++PV K V+RSSP RP I
Sbjct: 659 NATGLRSLRTIETPAFEALRSPIESTSIKVSGSSTA-NVSPVNCK---VERSSPVRPPPI 714
Query: 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777
LNG D +R +EK R +ED +D+TK W+LTEI+DP+QCR V MP++TDS SKV RLLYTN
Sbjct: 715 LNGVDPMSRSVEKSR-VEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTN 773
Query: 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDVV 836
S +GILAL SNGVQKLWKW R EQNP+GKATA+V PQ WQP++GLLMTND+ N E+ V
Sbjct: 774 SAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAV 833
Query: 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896
PC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNII+IGMED
Sbjct: 834 PCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMED 893
Query: 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956
STI IYNVRVDEVK+KLKGHQ+ ITGLAFSTNLNILVSSG+DAQ+ W+ DTWEKRKSI
Sbjct: 894 STIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIP 953
Query: 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAA 1016
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYDGSKME IRQW+PQD LS+PIS AA
Sbjct: 954 IQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAA 1013
Query: 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEP 1076
YSCNSQLIYA+F D +IGVFDADSLRLRCRIAP +S A+ + SQ V+PLV+ +HP EP
Sbjct: 1014 YSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEP 1073
Query: 1077 NQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
NQ AVGL+DGSVKVIEPSE+E KWG + P+DNG N + + S T+N T +Q QR
Sbjct: 1074 NQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1136 (75%), Positives = 975/1136 (85%), Gaps = 10/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVH+LE+ESGFFFNMKYFEEK AGEW+E+EKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+AKAVEILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL+FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+C+PPNG APTPV LP+AAVAKPA Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHG-PFP 239
Query: 241 PAVAAANANALA-GWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDY 299
PA AA GWM NA+ SSS+Q++VV AS++PV NQV +LK PR P GMIDY
Sbjct: 240 PAAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDY 299
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
++DHEQL KRLR SV+E +YP+ ++QA+WSLDDLPR V T+HQGSSV SMDFHP H
Sbjct: 300 QNADHEQLMKRLRPGHSVEEVSYPL-ARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSH 358
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL+ G +GEI+LW++ LRE+LVSKPFKIWD+S CS+ QAA VKD+ ISVSRV WSP
Sbjct: 359 HTLLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSP 418
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DG+F+G+AFTKHLIHLY Y G N+L Q +E+DAHVGGVNDL+F++PNKQ+CIVTCGDDKL
Sbjct: 419 DGSFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDL+GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDN+GSRVDYDA
Sbjct: 479 IKVWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADG+RLFSCGTSK+G+S LVEWNESEGA+KRTY GFRKKS GVVQFDTT
Sbjct: 539 PGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
+NR LAAGED Q+KFWDMDN+N+L S++A+GGL SLPRLRFNKEGN+L VTT D G KIL
Sbjct: 599 QNRFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRA---STEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716
ANA GLR+LR IET A+E R+ ST +KV + ++PV K V+RSSP RPS
Sbjct: 659 ANASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCK---VERSSPVRPSP 715
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D R EKPR +ED+ D+ KPW+L+EI+DP+QCR V MPESTDS+SKV RLLYT
Sbjct: 716 ILNGVDPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYT 775
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NS +GILAL SNG+QKLWKW R+EQNP+GKATA V P HWQP+NGLLMTND+ N E+
Sbjct: 776 NSAVGILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEA 835
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGME
Sbjct: 836 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGME 895
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DA L W+ DTWEKRKSI
Sbjct: 896 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSI 955
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
IQLPAGK PVG+TRVQFHSDQ+RLLV HETQLAIYD SKME IRQWVPQDVLS+PIS A
Sbjct: 956 PIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYA 1015
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE 1075
AYSCNSQLIYATF D +IGVFDADSLRLRCRIAPS +S A+ + SQ V+PLVV +HP E
Sbjct: 1016 AYSCNSQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLE 1075
Query: 1076 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
PNQ AVGLTDGSVKVIEP+E+E KWG + P+DNG N R +SS T+N T +Q QR
Sbjct: 1076 PNQFAVGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1781 bits (4613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1136 (76%), Positives = 975/1136 (85%), Gaps = 9/1136 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFL+EEKF ESVH+LE++SGF+FNMKYFEEK AGEW+E+E YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD D+AKAVEILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
L NFRENEQLSKYGDT++AR+IML+ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFP 240
WQHQLCKNPRPNPDIKTLF DH+CSPPNG AP PV LPVAAVAKP+ Y LGAH PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHG-PFP 239
Query: 241 PAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYP 300
P AAANA ALAGWM NA+ SSS+Q++VV ASS+PV NQVSVLK PR P GM+DY
Sbjct: 240 PTAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQ 299
Query: 301 SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHH 360
+ DHEQL KRLR +QSVDE TYP QQA+WSLDDLPR VA TMHQGS+V SMDFHP H
Sbjct: 300 NPDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQ 359
Query: 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420
TLL+VG +GE+TLW++ RERLVSKPFKIW++++CS+ QA+ VKD+ +SV+RV WSPD
Sbjct: 360 TLLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPD 419
Query: 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480
G+ +G AF KHLIHLY Y GS+DL Q LEIDAH GGVNDLAF++PNKQLC+VTCGDDKLI
Sbjct: 420 GSLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+VWDL GRKLF FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAWLYDNVGSRVDYDAP
Sbjct: 480 KVWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAP 539
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS-AGVVQFDTT 599
G WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGA+KR Y GFRKKS AGVVQFDTT
Sbjct: 540 GHWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTT 599
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
+N LAAGED QIKFWDMDN N+LTS +A+GGLPSLPRLRFNKEGNLL VTTAD G KI+
Sbjct: 600 QNHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKII 659
Query: 660 ANADGLRALRAIETRAYETSRASTE---MKVPGSAVVTTITPVLSKAERVDRSSPARPST 716
ANA GLRALRA+ET +E R+ E +KV G++ V I+PV K V+RSSP RPS
Sbjct: 660 ANAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLK---VERSSPVRPSP 716
Query: 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776
ILNG D +R +EK R ++D+ DKTKPW+L EIV+P +CR+V +P+STDS+SKV RLLYT
Sbjct: 717 ILNGVDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYT 776
Query: 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPE-NAEDV 835
NSG+GILAL SNG+QKLWKW R++QNPSGKATA PQHWQP++GLLM NDV N E+
Sbjct: 777 NSGVGILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEA 836
Query: 836 VPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
VPC+ALSKNDSYVMSA GGKVSLFNMM FKVMTTFMSPPPASTFLAFHPQDNNIIAIGME
Sbjct: 837 VPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 896
Query: 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
DSTI IYNVRVDEVK+KLKGHQK ITGLAFSTNLNILVSSG+DAQL W+ DTWEKRKS
Sbjct: 897 DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSF 956
Query: 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015
IQ+PAGK P G TRVQFHSDQ RLLV HETQLAIYD SKM+ IRQWVPQD +S+PIS A
Sbjct: 957 TIQIPAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYA 1016
Query: 1016 AYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE 1075
AYSCNSQLI+A+F DG+IGVFDADSLRLRCRIAPSAY+S A N SQ+++PLVV +HP E
Sbjct: 1017 AYSCNSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNGSQSIYPLVVAAHPHE 1076
Query: 1076 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSSATNNPTPEQFQR 1131
NQLAVGLTDGSVKV+EP ++ KWG + PVDNG N RT +SS T+N TP+Q QR
Sbjct: 1077 TNQLAVGLTDGSVKVMEPKASDGKWGTSPPVDNGILNGRTTSSSTTSNHTPDQLQR 1132
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1131 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.996 | 0.996 | 0.753 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.978 | 0.978 | 0.621 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.971 | 0.981 | 0.616 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.328 | 0.501 | 0.356 | 5.9e-90 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.499 | 0.414 | 0.227 | 1.4e-17 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.168 | 0.303 | 0.245 | 8.6e-15 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.239 | 0.511 | 0.242 | 6.2e-12 | |
| DICTYBASE|DDB_G0287273 | 335 | wdr5 "WD40 repeat-containing p | 0.173 | 0.585 | 0.283 | 6.1e-12 | |
| GENEDB_PFALCIPARUM|MAL8P1.43 | 324 | MAL8P1.43 "u5 snrnp-specific p | 0.101 | 0.354 | 0.276 | 7e-12 | |
| POMBASE|SPCC16A11.02 | 777 | utp13 "U3 snoRNP-associated pr | 0.181 | 0.263 | 0.25 | 5e-11 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4515 (1594.4 bits), Expect = 0., P = 0.
Identities = 855/1135 (75%), Positives = 966/1135 (85%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKESVH+LEQESGFFFN+KYFEEKALAGEWDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR+DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR+IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGXXXXXXX 240
WQHQLCKNPRPNPDIKTLF+DHSCSP NGARA TPV LPVAAVA+P+ + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 241 XXXXXXXXXXXXXXXXXX-XPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P P+QP+QV+ LKHPRAPSN+LG++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 300 PSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFH 359
S+DHEQL KRLR++Q+ +E TYP S SLDDLPR V T+ QGS V+SMDFHP H
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPA-SLDDLPRNVVSTIRQGSVVISMDFHPSH 359
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
HTLL VGC GE+TLW+VG RE++V++PFKIW+M+ CS++ Q +IVK+ SISV+RVAWSP
Sbjct: 360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479
DGN +GV+FTKHLIH+Y YQGS DL Q LEIDAHVG VNDLAF++PNKQ+C+VTCGDDKL
Sbjct: 420 DGNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478
Query: 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539
I+VWDLSG+KLF FEGHEAPVYS+CPHQKENI FIFSTA+DGKIKAWLYDNVGSRVDYDA
Sbjct: 479 IKVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDA 538
Query: 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT 599
PG WCTTMLYSADGSRLFSCGTSKEGDS LVEWNESEGALKRTY+GFRKKSAGVVQFDTT
Sbjct: 539 PGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTT 598
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
RNR LA GEDNQIKFW+MDN N+LT EAEGGLP+LPRLRFNK+GNLL VTTAD G KIL
Sbjct: 599 RNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKIL 658
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
AN DGLR LRA E R++E S+AS +MKV SA+ ++I+P + K E +D SPARP+ I N
Sbjct: 659 ANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPN 718
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
G ++ +R +EKPRNL+ + DK+KP ELTEIVDP QCR V MP+S DS SKVARLLYTNSG
Sbjct: 719 GIEAMSRTMEKPRNLDSV-DKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSG 777
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+G+LAL SNGVQ+LWKW R EQNP+GKATA+V PQHWQP++GLLM NDVPEN E VPC+
Sbjct: 778 VGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPENPEGSVPCI 837
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
ALSKNDSYVMSA GGKVSLFNMM FKVMTTFM PPPASTFLAFHPQDNNIIAIGMEDS+I
Sbjct: 838 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSI 897
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959
IYNVRVDEVKTKLKGHQKHITGLAFST LNILVSSG+DAQL FW D+WEK+KS AIQL
Sbjct: 898 HIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQL 957
Query: 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019
P GK PVG+TRVQFH+DQ++LLV+HETQLAIYD SKMECI +WVPQ+ LSSPI+SA+YSC
Sbjct: 958 PPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSC 1017
Query: 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQL 1079
NSQL+YA+F DG+I VFDA+SLRLRCRIAPSAYM Q +PNS+ +FP V+T+HPQEPNQL
Sbjct: 1018 NSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAP-IFPQVITAHPQEPNQL 1076
Query: 1080 AVGLTDGSVKVIEPSETERKWGVAVPVDN---GTDNCRTVTSSATNNPTPEQFQR 1131
AVGL+DGSVKVIEPSE R+WGV V + GT+N R +SSA NN + +Q QR
Sbjct: 1077 AVGLSDGSVKVIEPSELSRRWGVGVAAGSDKAGTENGRPSSSSAANNSSSDQIQR 1131
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3596 (1270.9 bits), Expect = 0., P = 0.
Identities = 712/1146 (62%), Positives = 852/1146 (74%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGXXXXXX 239
WQHQLCKNPRPNPDIKTLFVDHSC PPNGARAP+PV P+ + K + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P P+ + LKHPR P T +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGG----PSIPAALKHPRTPP-TNASLDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV---P---SQQATW------SLDDLPRAVACTMHQG 347
PS+D E + KR R DE V P S QA + DDLP+ VA T+ QG
Sbjct: 296 PSADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND++FS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC++TCGDDK I+VWD + G K FEGHEAPVYSVCPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDYDAPG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD V +LT+ + +GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ + IKI+AN+DGLR L E + E+S+ + +A T A
Sbjct: 656 LAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAAT------SAGHA 709
Query: 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766
DRS+ +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 710 DRSANVVSIQGMNG-DSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826
A K++RL++TNSG ILAL SN + LWKW R E+N +GKATA++ PQ WQP++G+LMTN
Sbjct: 769 A-KISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTN 827
Query: 827 DVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ 885
DV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFHPQ
Sbjct: 828 DVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 887
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
DNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL WN
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWN 947
Query: 946 TDTWEKRKSIAIQLPAGK---LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQW 1002
TD WEK++S + LP G+ P +TRVQFH DQ LV HETQLAIY+ +K+EC++QW
Sbjct: 948 TDGWEKQRSKVLPLPQGRPNSAP-SDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQW 1006
Query: 1003 VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062
++ L+ PI+ A +SC+SQL+YA+F D ++ VF + +LRLRCR+ PSAY+ + NS+
Sbjct: 1007 AVRESLA-PITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN- 1064
Query: 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDN----CRTVTS 1118
V PLV+ +HPQEPN AVGL+DG V + EP E+E KWGVA P +NG+ + +V +
Sbjct: 1065 -VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGA 1123
Query: 1119 SATNNP 1124
SA++ P
Sbjct: 1124 SASDQP 1129
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3575 (1263.5 bits), Expect = 0., P = 0.
Identities = 708/1149 (61%), Positives = 854/1149 (74%)
Query: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMKYFEEKALAGEWDEIEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQESGFFFNMKYFE++ G WDE+EKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQSLN 180
LENFRENEQLSKYGDT+SAR IMLVELKKLIEANPLFRDKL FP+L+TSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPV-AAVAKPATYAPLGXXXXXX 239
WQHQLCKNPRPNPDIKTLFVDHSC PN ARAP+PV P+ ++ K + PLG
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXLPVQPNQVSVLKHPRAPSNTLGMIDY 299
P +Q + LKHPR P + +DY
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQ----AALKHPRTPPSN-SAVDY 295
Query: 300 PSSDHEQLKKRLRASQSVDEATYPV-------PSQ-----QATWSLDDLPRAVACTMHQG 347
PS D + + KR R DE + V P Q Q + DDLP+ VA T+ QG
Sbjct: 296 PSGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQG 355
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
SS +SMDFHP TLL+VG G+I LW+VG RERLV K FK+WD+S CSM LQAA+VK+
Sbjct: 356 SSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+SV+RV WSPDG+ GVA+++H++ LY+Y G D+ Q LEIDAHVGGVND+AFS PNK
Sbjct: 416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNK 475
Query: 468 QLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
QLC+ TCGDDK I+VWD + G K + FEGHEAPVYS+CPH KENI FIFSTA+DGKIKAW
Sbjct: 476 QLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Query: 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586
LYDN+GSRVDY+APG WCTTM YSADG+RLFSCGTSK+G+S +VEWNESEGA+KRTY GF
Sbjct: 536 LYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595
Query: 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646
K+S GVVQFDTT+NR LAAG+D IKFWDMD + +LT+ +A+GGL + PR+RFNKEG+L
Sbjct: 596 HKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSL 655
Query: 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706
L V+ D IK++AN+DGLR L +E + E+S+ P ++ V
Sbjct: 656 LAVSANDNMIKVMANSDGLRLLHTVENLSSESSK-----------------PAINSIPMV 698
Query: 707 DRSSPARPSTI--LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764
+R PA +I +NG DS KP E+ +DK+K W+LTE+ +P QCR + +PE+
Sbjct: 699 ER--PASVVSIPGMNG-DSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENM 755
Query: 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824
+K++RL++TNSG ILAL SN + LWKW R ++N +GKATA++ PQ WQP++G+LM
Sbjct: 756 -RVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILM 814
Query: 825 TNDVPE-NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFH 883
TNDV E N E+ VPC ALSKNDSYVMSA GGK+SLFNMM FK M TFM PPPA+TFLAFH
Sbjct: 815 TNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 874
Query: 884 PQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943
PQDNNIIAIGM+DSTIQIYNVRVDEVK+KLKGH K ITGLAFS LN+LVSSG+DAQL
Sbjct: 875 PQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCV 934
Query: 944 WNTDTWEKRKSIAIQLPAGKLP--VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQ 1001
WNTD WEK+KS +Q+P G+ + +TRVQFH DQV LV HETQLAIY+ +K+EC++Q
Sbjct: 935 WNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994
Query: 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSS 1061
W P ++PI+ A +SC+SQLIY +F D +I VF + +LRLRCR+ PSAY+ + NS+
Sbjct: 995 W-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN 1053
Query: 1062 QTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTDNCRTVTSS-- 1119
V PLV+ +HPQE N AVGL+DG V + EP E+E KWGVA P +NG+ + T T S
Sbjct: 1054 --VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVG 1111
Query: 1120 ATNNPTPEQ 1128
A+ + P++
Sbjct: 1112 ASASDQPQR 1120
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| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 5.9e-90, Sum P(2) = 5.9e-90
Identities = 138/387 (35%), Positives = 216/387 (55%)
Query: 731 PRNLEDISDKTKPWEL--TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN 788
P +++ KT P + EI DP QC + +P+ S K+ARL Y+ SG ILAL +
Sbjct: 352 PSSMKFFFKKTVPRKKKPNEIKDPSQCNALVLPDCF-SEEKIARLTYSPSGDYILALAED 410
Query: 789 GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848
KLW W+ + QN K P+ QP +G M N++ + + C A+ SY+
Sbjct: 411 ATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEMATSVQKSTSCFAVK--GSYL 467
Query: 849 MSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908
S GGK+++F++ NF+ + +F SP P +T+ F P D ++A+G++D +I I+ + +
Sbjct: 468 FSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRK 525
Query: 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK---RKSIAIQLPAGKLP 965
VK KL+GH + IT LAFS N+LVSS SD +L W+T +W K + S L
Sbjct: 526 VKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLE 585
Query: 966 VGE--TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL 1023
T +QF Q+ LLV H+ + +Y+ ++C QW+P D I+SA YS + ++
Sbjct: 586 STSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQWIP-DASDPAITSATYSSDGEI 644
Query: 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL 1083
IY F GSI + D+ + C+I +++ ++ N S V+P VV +HP PNQ++ GL
Sbjct: 645 IYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGL 704
Query: 1084 TDGSVKVIEPSETERKWGVAVPV-DNG 1109
++G V V++P + WG A P+ DNG
Sbjct: 705 SNGKVIVLQPLWSGG-WGEAAPLEDNG 730
|
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| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 142/623 (22%), Positives = 261/623 (41%)
Query: 389 KIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSL 448
KIWD + +LQ + S +V +A+SPDG + + I L+ + +L Q+
Sbjct: 775 KIWDPAT-GELLQT--LDGHSGTVESLAFSPDGKLLASGSYDNTIDLWD-SATGELLQTF 830
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC--P 505
E H + +AF+ K+L + DD I++WDL+ +L Q + H V SV P
Sbjct: 831 E--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGELQQTLDSHSQSVRSVAFSP 886
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
K + S+++D IK W + + W ++ +S DG +L S G+ K
Sbjct: 887 DGK----LLASSSLDSTIKVWNPATGELQQSLEGRSGWVKSVAFSPDGKKLAS-GSEK-- 939
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625
+ + WN + G L +T G +S V F ++ ++ D IK W+ L
Sbjct: 940 -NTVKLWNPATGELLQTLEG-HSQSVRSVAFSPDGKQLASSSSDTTIKLWN-STTGELQQ 996
Query: 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI--LANADGLRALRAIETRAYETSRAST 683
T +G + + F+ +G LV + D IK+ LA ++ ++L + + +
Sbjct: 997 T-FKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLWDLATSELQQSLEDHSRSVHAVAFSPD 1055
Query: 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743
+ ++ S++ +TI S + R+ + + G N D K
Sbjct: 1056 DKQLASSSLDSTIKLWDSATGELQRTLEGHSQGV-RSVTFSPDGKLLASNSYD--GTIKL 1112
Query: 744 WELTEIVDPLQCRVVAMPESTDSA--SKVARLLYTNSGIGILALWSNGVQKLWKW----- 796
W + LQ + + DS S + L + + LW + +L +
Sbjct: 1113 WN--PLTGELQQTLTGRSDWVDSVAFSPDGKQLASGYYDSTIKLWDSATGELLQTLEGHS 1170
Query: 797 NRTEQ---NPSGKATAAVAPQH----WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849
+R + +P GK A+ + W P+ G L+ + E V VA S + +
Sbjct: 1171 DRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELL--QIFEGHSKWVESVAFSPDGKLLA 1228
Query: 850 SAGGGK-VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908
S+ G+ + L++ + +++ T P ++ +AF P N + ++ + D+ +I++ E
Sbjct: 1229 SSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRLASVDIFDT--KIWDPATGE 1286
Query: 909 VKTKLKGHQKHI---TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965
+ LKGH K + TG S L+ + + I W +++ I + G L
Sbjct: 1287 LLQALKGHSKWVWSRTGAGISIFLDQWLCL--QEKRILWLPQSYQP---FCISVNDGVLV 1341
Query: 966 VGET--RVQFHSDQVRLLVNHET 986
+G + RV F L+ + ET
Sbjct: 1342 LGHSSGRVSFIQGPRFLIESEET 1364
|
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| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 8.6e-15, Sum P(3) = 8.6e-15
Identities = 52/212 (24%), Positives = 95/212 (44%)
Query: 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFF---NMKYFEEKALAGEWDEIEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E L G+W + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L +L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLENFRENEQLSKY-GDTRSARTIMLVELKKLIEANPLFRDKLVFPSLKTSRLRTLINQ 177
+ ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 S--LNWQHQLCKNPRPNPDIKT--LFVDHSCS 205
+ L QH C + +++T L DH C+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCT 298
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| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 74/305 (24%), Positives = 125/305 (40%)
Query: 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422
L+ G DG I +WD + +SK SN M+ D +I +A+S DG
Sbjct: 240 LLTGSMDGFIEVWDYNTGK--LSKSLAY--QSNDDFMMH-----DDAILC--IAFSKDGE 288
Query: 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482
F+ + I ++ + L + E AH GV L FS + Q I++ D +++
Sbjct: 289 FLATGSLDNKIKVWQIKSGKCL-RKFE-PAHTNGVTCLQFSRNSTQ--ILSGSFDSSLKI 344
Query: 483 WDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG 541
L SG+ L F GH++ V C + E+ + S + DGKIK W D S D
Sbjct: 345 HGLKSGKALKIFRGHQSFVNDCCFNHDEDR--VISCSSDGKIKIW--DAKSS----DCLQ 396
Query: 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--------GALKRTYIGFRKKSAGV 593
T + + + S + L+ N S+ + +T+ K+ V
Sbjct: 397 TITPTSVVTVRDISIRSITILLKNPEFLLVCNSSQISIVSMKSQTISKTFTSENSKTFLV 456
Query: 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653
+N + A EDN + +D ++ ++L + + + + NLL T +D
Sbjct: 457 CTLSPLQNYLYAVDEDNILYTFDFNSGSLLNKFKIHD--QEVISISHHPTKNLLATTGSD 514
Query: 654 QGIKI 658
+KI
Sbjct: 515 CLLKI 519
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| DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 60/212 (28%), Positives = 104/212 (49%)
Query: 411 SVSRVAWSPDGNFIGVAFTKHLIHLY-TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQL 469
S+S V +SPDG ++ A I ++ Y G + ++LE H G++D+A+S +K +
Sbjct: 48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFE--RTLE--GHKEGISDIAWSQDSKLI 103
Query: 470 CIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
C + DDK I++WD+ SG+ + +GH+ V+ V + + N+ I S + D ++ W
Sbjct: 104 C--SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV 159
Query: 529 DNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587
N G A T + ++ DG+ + S G S +G + W+ + G L T
Sbjct: 160 -NTGECTKMISAHSDPVTGVHFNRDGTLVVS-G-SYDGTVRI--WDTTTGQLLNTISTED 214
Query: 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619
K V+F +LA DN ++ W +N
Sbjct: 215 GKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNN 246
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| GENEDB_PFALCIPARUM|MAL8P1.43 MAL8P1.43 "u5 snrnp-specific protein, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 7.0e-12, Sum P(2) = 7.0e-12
Identities = 34/123 (27%), Positives = 58/123 (47%)
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
+++ +V + W D N+I A H + L+ + + L +S + H VN L
Sbjct: 75 VLRGHKNAVLQAKWLQDDNYICSASADHKLFLWDVECESKL-RSFK--GHDNIVNGLDII 131
Query: 464 YPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKI 523
N L V+C DD ++ WD+ + H+ P+ SVC +K F+F++ VD I
Sbjct: 132 --NHNL-FVSCSDDNTLKFWDIRSKWAVHIIKHDFPLLSVCSDKKGE--FLFTSCVDNTI 186
Query: 524 KAW 526
K +
Sbjct: 187 KKY 189
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| POMBASE|SPCC16A11.02 utp13 "U3 snoRNP-associated protein Utp13 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 54/216 (25%), Positives = 93/216 (43%)
Query: 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF 462
+I KD V+ +A + D + AF L+ +Y + +S++ AH V +
Sbjct: 55 SIKKDEDDYVTALAITSDSKKLIAAFRSRLLTIYEIPSGRRI-KSMK--AHETPVITMTI 111
Query: 463 SYPNKQLCIVTCGDDKLIRVWDLSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
P L + T G + L++VWD++G + F GH + ++C + +N + S A D
Sbjct: 112 D-PTNTL-LATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFGKHQNTWVLASGADDS 169
Query: 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581
+++ W ++ S ++ + + GS L S G+ D + WN + + R
Sbjct: 170 RVRLWDLNSSRSMAVFEGHSSVIRGLTFEPTGSFLLS-GSR---DKTVQVWNIKKRSAVR 225
Query: 582 TYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWD 616
T F A G V + AGE N I WD
Sbjct: 226 TIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWD 261
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7744 | 0.9964 | 0.9964 | yes | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7087 | 0.9778 | 0.9981 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | TPR2 | TPR2 (TOPLESS-RELATED 2); TOPLESS-RELATED 2 (TPR2); INVOLVED IN- primary shoot apical meristem specification; LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40 repeat, region (InterPro-IPR017986), WD40/YVTN repeat-like (InterPro-IPR015943), WD40 repeat (InterPro-IPR001680), CTLH, C-terminal to LisH motif (InterPro-IPR006595), LisH dimerisation motif (InterPro-IPR006594); BEST Arabidopsis thaliana protein match is- TPR3 (TOPLESS-RELATED 3) (TAIR-AT5G27030.1); Has [...] (1131 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | HSP81-2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding; a member of heat shock protein 90 (HSP90) gene [...] (699 aa) | • | 0.869 | |||||||
 | CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP binding / DNA binding / chromatin binding / helicase/ nuclei [...] (2242 aa) | • | • | 0.787 | ||||||
 | LBD37 | LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37); LOB DOMAIN-CONTAINING PROTEIN 37 (LBD37); INVOLVED IN [...] (250 aa) | • | 0.770 | |||||||
 | TOE2 | TOE2; DNA binding / transcription factor; TOE2; FUNCTIONS IN- transcription factor activity, DN [...] (485 aa) | • | 0.770 | |||||||
 | AT5G49300 | zinc finger (GATA type) family protein; zinc finger (GATA type) family protein; FUNCTIONS IN- t [...] (139 aa) | • | 0.770 | |||||||
 | ATAUX2-11 | ATAUX2-11 (AUXIN INDUCIBLE 2-11); DNA binding / transcription factor; Auxin inducible protein s [...] (186 aa) | • | 0.770 | |||||||
 | BZIP9 | BZIP9 (BASIC LEUCINE ZIPPER 9); DNA binding / protein heterodimerization/ transcription factor; [...] (277 aa) | • | 0.770 | |||||||
 | AT5G17300 | myb family transcription factor; myb family transcription factor; FUNCTIONS IN- transcription f [...] (387 aa) | • | 0.770 | |||||||
 | AGL15 | AGL15 (AGAMOUS-LIKE 15); DNA binding / transcription factor; AGL15 (AGAMOUS-Like 15) is a membe [...] (268 aa) | • | 0.770 | |||||||
 | OBF5 | OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / protein binding / transcription factor; Enco [...] (330 aa) | • | 0.770 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1131 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 4e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 5e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-33
Identities = 77/317 (24%), Positives = 122/317 (38%), Gaps = 45/317 (14%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
V + F P LL G GDG I K+WD+ ++ +K
Sbjct: 10 GGVTCVAFSP-DGKLLATGSGDGTI----------------KVWDLETGELLRT---LKG 49
Query: 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK 467
+ V VA S DG ++ + I L+ + + + H V+ +AFS P+
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFS-PDG 105
Query: 468 QLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
++ + + DK I+VWD+ +G+ L GH V SV F+ S++ DG IK W
Sbjct: 106 RI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTIKLW 162
Query: 527 LYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584
D + G ++ +S DG +L S D + W+ S G T
Sbjct: 163 --DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS----SDGTIKLWDLSTGKCLGTLR 216
Query: 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN---VNMLTSTEAEGGLPSLPRLRFN 641
G V F + + ED I+ WD+ V L+ L ++
Sbjct: 217 GHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SLAWS 270
Query: 642 KEGNLLVVTTADQGIKI 658
+G L +AD I+I
Sbjct: 271 PDGKRLASGSADGTIRI 287
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Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.9 bits (224), Expect = 7e-19
Identities = 76/311 (24%), Positives = 120/311 (38%), Gaps = 26/311 (8%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
S+ S+ F P LL+ G DG I LWD+ E+L+ ++
Sbjct: 66 DSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 408 SSISVSRVAW-SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466
SVS++A SPDGN I +A + + + S ++ H V LAFS P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PD 166
Query: 467 KQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525
+L D I++WDL K GH PV S+ + S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRL 225
Query: 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585
W + +S DGS L S D + W+ + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTLS 281
Query: 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645
S V F + + D ++ WD++ +L+S +G + L F+ +G+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341
Query: 646 LLVVTTADQGI 656
LLV +D G
Sbjct: 342 LLVSGGSDDGT 352
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 8e-19
Identities = 39/226 (17%), Positives = 93/226 (41%), Gaps = 38/226 (16%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
V CVA S + + + G G + ++++ +++ T +A + +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951
D TI+++++ E L GH +++ +AFS + IL SS D + W+ +T +
Sbjct: 69 GSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
Query: 952 RKSIAIQLPAGKLPVGETRVQFHSDQVR-LLVNHETQLA----------IYDGSKMECIR 1000
++ + H+D V + + + ++D +C+
Sbjct: 128 LTTL----------------RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171
Query: 1001 QWVPQDVLS---SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043
L+ ++S A+S + + + ++ +DG+I ++D + +
Sbjct: 172 ------TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.8 bits (208), Expect = 7e-17
Identities = 69/316 (21%), Positives = 113/316 (35%), Gaps = 38/316 (12%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV-----S 385
W L + + SV S+ F P L DG I LWD+ + L +
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT 198
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRV-------------------AWSPDGNFIGV 426
P S +L A+ D +I + + ++SPDG+ +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLAS 258
Query: 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486
+ I L+ + + H V +AFS P+ +L + D +R+WDL
Sbjct: 259 GSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFS-PDGKLLA-SGSSDGTVRLWDLE 314
Query: 487 GRKLFQ---FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW 543
KL +GHE PV S+ + + + DG I+ W +
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-N 372
Query: 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603
++ +S DG + S T D + W+ S G+L R G + F +
Sbjct: 373 VLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH-TSRVTSLDFSPDGKSL 427
Query: 604 LAAGEDNQIKFWDMDN 619
+ DN I+ WD+
Sbjct: 428 ASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 58/277 (20%), Positives = 115/277 (41%), Gaps = 27/277 (9%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPP 874
W G L+ + V VA S + +Y+ S + L+++ + + T
Sbjct: 36 WDLETGELLR--TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT 93
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
+ +AF P D I++ D TI++++V + T L+GH + +AFS + + S
Sbjct: 94 SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDG 993
S D + W+ T + L V V F D +LL + + + ++D
Sbjct: 153 SSQDGTIKLWDLRTGKCVA----TLTGHTGEV--NSVAFSPDGEKLLSSSSDGTIKLWDL 206
Query: 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM 1053
S +C+ + + ++S A+S + L+ + DG+I V+D + +
Sbjct: 207 STGKCLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL------ 257
Query: 1054 SQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090
+ +V + P + +LA G DG++++
Sbjct: 258 ----SGHTNSVT--SLAWSP-DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 20/215 (9%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GRKLFQFEGHEAPVYSV--CP 505
+ H GGV +AFS P+ +L + T D I+VWDL G L +GH PV V
Sbjct: 4 TLKGHTGGVTCVAFS-PDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
++ S + D I+ W + + +++ +S DG L S
Sbjct: 62 DGT----YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS----R 113
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGV--VQFDTTRNRILAAGEDNQIKFWDMDNVNML 623
D + W+ G T G + V V F + ++ +D IK WD+
Sbjct: 114 DKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGK 168
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
G + + F+ +G L+ +++D IK+
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 34/218 (15%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
V VA S + + S+ + ++++ K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 892 IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951
+D TI+++++R + L GH + +AFS + L+SS SD + W+ T +
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 952 RKSIAIQLPAGKLPVGETRVQFHSDQVR-LLVNHETQLAI---YDGSKMECIRQW----- 1002
++ + H + V + + + L DG+ IR W
Sbjct: 212 LGTL----------------RGHENGVNSVAFSPDGYLLASGSEDGT----IRVWDLRTG 251
Query: 1003 VPQDVLS---SPISSAAYSCNSQLIYATFTDGSIGVFD 1037
LS + ++S A+S + + + + DG+I ++D
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-13
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 34 FFFNMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAK 92
F K E L G+WDE ++LS R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (164), Expect = 1e-11
Identities = 61/291 (20%), Positives = 120/291 (41%), Gaps = 41/291 (14%)
Query: 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG----GKVSLFNMMN-FKVMTT 869
W NG + + + V +ALS D + G V L+++ K++ T
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929
+ T LAF P + + D TI+++++R + + L GH ++ LAFS +
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 930 NILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988
+L++SGS D + W+ T + + + + HSD V + + L
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLR---------------STLSGHSDSVVSSFSPDGSL 255
Query: 989 AIYDGSKMECIRQW---------VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039
+ GS IR W SS + S A+S + +L+ + +DG++ ++D +
Sbjct: 256 -LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314
Query: 1040 SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090
+ +L + + S ++ P ++ G DG++++
Sbjct: 315 TGKLLSSLTLKGHEGPVS----------SLSFSPDGSLLVSGGSDDGTIRL 355
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 21/175 (12%)
Query: 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW-LYDNVGSRVDY--DAPGLWCTT 546
+GH V V + + + DG IK W L R P
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV-- 57
Query: 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV--VQFDTTRNRIL 604
SADG+ L S + D + W+ G RT G V V F +
Sbjct: 58 -AASADGTYLASGSS----DKTIRLWDLETGECVRTLTGHTS---YVSSVAFSPDGRILS 109
Query: 605 AAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
++ D IK WD++ LT+ + S + F+ +G + ++ D IK+
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKL 161
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
LKGH +T +AFS + +L + D + W+ +T E + L PV V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR----TLKGHTGPV--RDVA 58
Query: 973 FHSDQVRLLVNHE-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031
+D L + ++D EC+R +S +SS A+S + +++ ++ D
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDK 115
Query: 1032 SIGVFDADS 1040
+I V+D ++
Sbjct: 116 TIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (141), Expect = 8e-09
Identities = 34/143 (23%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLFNMMNFKVMTTFMSP 873
W G L+++ + E V ++ S + S ++S G G + L+++ K + T
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Query: 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILV 933
+ ++F P D +++ G D T++++++ + L GH +T L FS + L
Sbjct: 371 SNVLS-VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 934 SSGSDAQLIFWNTDTWEKRKSIA 956
S SD + W+ T K S +
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVSFS 451
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
W L T H G V S+ F P L+ DG I LWD+
Sbjct: 162 WDLRTGKCVATLTGHTGE-VNSVAFSP-DGEKLLSSSSDGTIKLWDL------------- 206
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
C L+ V+ VA+SPDG + I ++ + + + Q+L
Sbjct: 207 -STGKCLGTLRG-----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTLS- 258
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
H V LA+S P+ + + + D IR+WD
Sbjct: 259 -GHTNSVTSLAWS-PDGK-RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (111), Expect = 4e-05
Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 19/227 (8%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936
S + ++ + DS + + ++ L+GH+ IT +AFS + +L+S
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLSSLL----LRGHEDSITSIAFSPDGELLLSGS 84
Query: 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
SD + W+ D K I V + + LL + +
Sbjct: 85 SDGTIKLWDLDN--GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055
+ + S ++S A+S + + L + DG+I ++D + + +A
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA------- 195
Query: 1056 ASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGV 1102
+ V + P +A G +DG++++ + S +
Sbjct: 196 ---GHTDPVS--SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-05
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
+ H G V +AFS P+ L + + DD +RVWD
Sbjct: 6 TLKGHTGPVTSVAFS-PDGNL-LASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
E+ LKGH +T +AFS + L S D + W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKESVHRLEQESGF 34
EL LIL++L ++E+ L++ESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
++ LKGH +T +AFS + N+L S D + W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
+ H G V +AFS P+ + + + DD I++WD
Sbjct: 7 TLKGHTGPVTSVAFS-PDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVR-----VDEVKTK---LKGHQKHITGLAFS-TNLN 930
L F+P + I+A G ED TI+++ + V E+K LKGH+K I+ + ++ N
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139
Query: 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLP 960
I+ SSG D+ + W D ++++ I +P
Sbjct: 140 IMCSSGFDSFVNIW--DIENEKRAFQINMP 167
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1131 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.84 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.62 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.61 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.55 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.52 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.44 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.43 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.41 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.38 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.36 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.32 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.31 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.31 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.29 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.26 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.26 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.25 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.24 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.22 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.16 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.14 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.1 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.08 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.05 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 99.03 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.98 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.93 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.92 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.88 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.87 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.84 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.8 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.79 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.78 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.76 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.7 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.7 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.69 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.68 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.64 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.62 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.6 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.6 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.58 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.52 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.49 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.46 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.44 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.41 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.41 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.41 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.41 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.38 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.37 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.33 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.33 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.29 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.29 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.29 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.26 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.22 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.21 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.2 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.12 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.05 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.03 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.02 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.01 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.99 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.99 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.94 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.9 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.86 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.84 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.81 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.71 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.7 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.69 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.63 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.62 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.62 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.61 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.6 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.53 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.52 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.44 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.41 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.38 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.37 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.32 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.29 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.27 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.25 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.24 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.23 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.2 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.16 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.14 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.1 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.06 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.05 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.97 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.96 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.92 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.84 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.83 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.82 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.8 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.64 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.61 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.57 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.54 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.53 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.45 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.44 | |
| PRK10115 | 686 | protease 2; Provisional | 96.42 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.41 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.29 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.19 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.17 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.08 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.03 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.98 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.83 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.79 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.76 | |
| PRK10115 | 686 | protease 2; Provisional | 95.68 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.59 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.56 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.55 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.54 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.49 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.34 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.27 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.16 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.68 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.35 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.33 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.09 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.08 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 94.05 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.9 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.86 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.67 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.66 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.55 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.55 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 93.5 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.28 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.18 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 93.15 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.12 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.92 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.72 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.64 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.42 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.06 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.57 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.36 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.11 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.1 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.8 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 90.48 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.38 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.37 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.23 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 90.18 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.03 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.98 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.79 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.77 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.53 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.42 | |
| PLN02153 | 341 | epithiospecifier protein | 89.31 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.86 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 88.73 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 88.61 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.52 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.5 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.42 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.39 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.25 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.97 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.92 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 87.72 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.53 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.25 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.14 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.29 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.14 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 86.13 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.91 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.89 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.8 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 85.34 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 84.25 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 83.63 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 82.89 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.72 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 82.38 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 82.2 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.49 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 81.48 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 81.31 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.86 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 80.82 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 80.58 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-69 Score=538.54 Aligned_cols=491 Identities=22% Similarity=0.309 Sum_probs=410.8
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN---MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1131)
+-|++|+++|+|+++||.+|+.+||.|||+.+. ++.|.++++.|+|+.++..+..+. .+++.....+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999885 999999999999999999998874 3335556679999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCccccc
Q 001178 82 LEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKL 161 (1131)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~ 161 (1131)
||++..+....|+.+||+++.++. ++.++|++|+.-|..++-....+..........|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 999999999999999999999885 48899999998776654432222222222467899999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 001178 162 VFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVPFPP 241 (1131)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~h~c~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (1131)
+|+.||++||+||+++|++.|.|||. .+..|||.||.|.+.+. |+ .+.++|.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~~qi-----p~----------qt~qil~-------- 221 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGRLQI-----PS----------QTWQILQ-------- 221 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCcccC-----Cc----------hhhhhHh--------
Confidence 99999999999999999999999995 66689999999999663 21 1122222
Q ss_pred CccccCchhhhhccccCCCCCccccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCccccc
Q 001178 242 AVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEAT 321 (1131)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1131)
T Consensus 222 -------------------------------------------------------------------------------- 221 (519)
T KOG0293|consen 222 -------------------------------------------------------------------------------- 221 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccccee
Q 001178 322 YPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1131)
Q Consensus 322 ~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1131)
.|+++|+.+.||++|+| ||+++.|.+..||++.....+. .
T Consensus 222 -----------------------~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l 261 (519)
T KOG0293|consen 222 -----------------------DHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------L 261 (519)
T ss_pred -----------------------hCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------e
Confidence 27778888888999985 8999999999999876544321 1
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++.+|..+|..+.||||.++|++|+.|..+++||+.+|...... -.+|...+.+++|.|||. .+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSGLGFSVSSCAWCPDGF--RFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccCcCCCcceeEEccCCc--eeEecCCCCcEE
Confidence 2268899999999999999999999999999999999999866532 134668899999999999 799999999999
Q ss_pred EEeCCCceeEEecCCc-cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 482 VWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.||.+|+.+...++-. ..|.++++ +.||+++++.+.|..|++++.++...+.. .....+|+++.+|.|++++++.-
T Consensus 338 ~wdlDgn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDLDGNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecCCcchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEc
Confidence 9999999988887654 45888888 46778999999999999999887665543 33456799999999999998876
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCce-EEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. +..+++||++..+.++.+.||..+.. -..||.. +..++++|++|+.|+||+..+++++..+.+|.. .|+++
T Consensus 415 ~----~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcV 488 (519)
T KOG0293|consen 415 Q----DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCV 488 (519)
T ss_pred c----cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEE
Confidence 5 88999999999999999999877532 2245543 447999999999999999999999999997765 89999
Q ss_pred EEcC-CCCEEEEEECCCcEEEEecCC
Q 001178 639 RFNK-EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 639 ~~sp-~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
+|+| +..++|++++||+|+||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 567889999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=476.23 Aligned_cols=487 Identities=20% Similarity=0.295 Sum_probs=403.9
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN----MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1131)
+.+|||||.|||+|+.+++++++||+|++++|| ++.|-+.|.+|+||.+++.+++| +++.+-+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 568999999999999999999999999999998 89999999999999999999988 44445789999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCcCcc
Q 001178 81 YLEALDRHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTRSARTIMLVELKKLIEANPLFR 158 (1131)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~ 158 (1131)
.|||+|.++...|+.+||+. +..|...+++||.+|..||..+.++.++.|.+ ...++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 55566778999999999999999999888865 33455556666666655543
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHhhccCCCCCCCcccccccccCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 001178 159 DKLVFPSLKTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCSPPNGARAPTPVTLPVAAVAKPATYAPLGAHAVP 238 (1131)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~h~c~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (1131)
+||+||+.||+||++||.++.+.| ++.++ |.
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQGLLP-----------------------------------PGt~i-------DL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQGLLP-----------------------------------PGTTI-------DL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcCCCC-----------------------------------CCcee-------ee
Confidence 999999999999999999987654 12222 55
Q ss_pred CCCCccccCchhhhhccccCCCCCccccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCcc
Q 001178 239 FPPAVAAANANALAGWMMNANPSSSIQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVD 318 (1131)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1131)
|++..+-.... ...+
T Consensus 186 FRGkAA~K~~~--------------------------------------------------Ee~~--------------- 200 (508)
T KOG0275|consen 186 FRGKAAMKDQE--------------------------------------------------EERY--------------- 200 (508)
T ss_pred ccchhhhhhhH--------------------------------------------------hhhc---------------
Confidence 55532111100 0001
Q ss_pred ccccCCCCCcccccCCCcccceeee--ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccc
Q 001178 319 EATYPVPSQQATWSLDDLPRAVACT--MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 319 ~~~~s~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
|..+.+. ++.++.+.|..|||||++ |++|+.||.|.|||..+|+..+...+..
T Consensus 201 ------------------Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQA------ 255 (508)
T KOG0275|consen 201 ------------------PTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQA------ 255 (508)
T ss_pred ------------------hHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhh------
Confidence 1112222 346778999999999995 9999999999999999999876544321
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
..-+..+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+ -.+|+..|+|+.||.|+. .+++++.
T Consensus 256 -----qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS~sf 326 (508)
T KOG0275|consen 256 -----QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILSASF 326 (508)
T ss_pred -----hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhcccc
Confidence 1235578899999999999999999999999999999999998743 248999999999999999 6999999
Q ss_pred CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEEEEEEccC-
Q 001178 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSAD- 552 (1131)
Q Consensus 477 d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~- 552 (1131)
|.+++|.- .+|+++..++||+..|+...| .++|..+++++.||+|++|+..+.++..++... ..+|+++..-|.
T Consensus 327 D~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred cceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCC
Confidence 99999999 999999999999999999988 567799999999999999999999988876654 347888877774
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
...+++|.. .+++++.++. |+.++.|.... ++..-+.+.+|.|.++++.++|+.++.|...+|+...++..|.
T Consensus 405 peh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 405 PEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred CceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 466777765 7789999975 88888886433 3345667899999999999999999999999999999998876
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
. .+..++-+|..+.+++-+.||.+++|.
T Consensus 480 k--dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 K--DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred c--cccccccCcccchhhhhcccchhhhcC
Confidence 5 688999999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-56 Score=475.33 Aligned_cols=574 Identities=19% Similarity=0.259 Sum_probs=477.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcc-cccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRER-LVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
++||++|+ +|++.+.| .|.+-|+.+++. +.. .-......|++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~-~L~t~~~d-~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACGD-RVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecCc-eEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999998 58887654 789999999887 321 2335567899999999999999999999
Q ss_pred eEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccC
Q 001178 432 LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKE 509 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1131)
.+++|++.+++.++ .+.. |++||.-++|+|.+. ++++|+.|+.++||| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998766 4556 999999999999997 899999999999999 8888999999999999999999999
Q ss_pred CccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC
Q 001178 510 NIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1131)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 588 (1131)
+...|++|..|+++++||+..... ......|...|+++.|++|+..+++++. |..+.+||+.+-+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 888999999999999999986554 5677889999999999999999999997 8899999998777776665433
Q ss_pred CceEEEEEeCC-----CCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 589 KSAGVVQFDTT-----RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 589 ~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+.++.+-++ +.+++++|.+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 5667777776 6799999999999999999998876655443 22466666666666777788899999999877
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
. +..+.+.|..+++... .++ .+....+++++..+.+++
T Consensus 313 l-~i~k~ivG~ndEI~Dm----------------------------------~~l-------G~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDM----------------------------------KFL-------GPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheee----------------------------------eec-------CCccceEEEEeCCCceEE
Confidence 7 6777777777766531 111 123567888888899999
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
|++.+. .|. -+ .+|...|.++....+|..+++++.|.++++|.++.+.. +.
T Consensus 351 y~~~~~----~c~--ii---~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~--------------------~~ 401 (775)
T KOG0319|consen 351 YTLPTS----YCQ--II---PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS--------------------KS 401 (775)
T ss_pred EecCCC----ceE--EE---eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc--------------------hh
Confidence 976653 333 22 45999999999888899999999999999998733111 11
Q ss_pred cccCCCCCCCCCeeEEEecCCC-CEEEEEe-CCeEEEEECCCcee-----E----EEEeCCCCCeeEEEEeCCCCcEEEE
Q 001178 824 MTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKV-----M----TTFMSPPPASTFLAFHPQDNNIIAI 892 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~vwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~~~~~la~ 892 (1131)
.......+|...|.+++++..+ .++++++ |+++++|++...+. . .+...|...|+|++++| +..++||
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 1111223799999999998766 4677777 99999999876211 1 12346899999999999 8999999
Q ss_pred EeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEE
Q 001178 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972 (1131)
Q Consensus 893 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 972 (1131)
|+.|.+.+||+++......++.||...|+++.|++..+.++|+|.|++|+||.+++..+ ++...+|. ..|..+.
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-----lkT~eGH~-~aVlra~ 554 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-----LKTFEGHT-SAVLRAS 554 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-----eeeecCcc-ceeEeee
Confidence 99999999999999999999999999999999999999999999999999999999664 44455544 7899999
Q ss_pred EcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 973 FHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
|-.+|+.|++ ++||-+++|++++++|...+..| ...|++++.++++.++++|+.||.|.+|.=.
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 9999998887 57999999999999999999887 8999999999999999999999999999643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=448.56 Aligned_cols=574 Identities=13% Similarity=0.210 Sum_probs=458.7
Q ss_pred cccCCCCCcccccCCC-------cccce-eeec--cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccce
Q 001178 320 ATYPVPSQQATWSLDD-------LPRAV-ACTM--HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFK 389 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~-------~~~~~-~~~~--~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~ 389 (1131)
+++++.|+.......+ .+... +... +..+.+++++.+||+. .|++++..+.+++|++.+|+.++.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 7777777643332222 23333 3332 3678999999999998 588899999999999999988762
Q ss_pred eecccccccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCc
Q 001178 390 IWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 468 (1131)
++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+.. .|.||.+.|.++.|.|+-..
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 445 99999999999999999999999999999999987654 79999999999999998776
Q ss_pred eEEEEEcCCCcEEEEe-CCCc-eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 469 LCIVTCGDDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd-~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
-+|++|..|+++++|| .+.. ++..+..|.+.|++++|.+ |+..+++++.|..+.+||+...+....+... ..+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheee
Confidence 5789999999999999 4343 5788899999999999965 5689999999999999999665555444332 34677
Q ss_pred EEEccC-----CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 547 MLYSAD-----GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 547 ~~~s~~-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+.+-++ |.+++++|. +|.+++||.++++++..........+..+...+....++....|..+.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 777776 679999886 89999999999988766554333345555555556678888889999999999998
Q ss_pred EEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 622 MLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
....+-+.. ..|.++.| .|+.+++++++..+.+++|+..+... . .+.+|...+.. ..
T Consensus 315 i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~-ii~GH~e~vlS---------------L~--- 372 (775)
T KOG0319|consen 315 IVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-Q-IIPGHTEAVLS---------------LD--- 372 (775)
T ss_pred EehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCce-E-EEeCchhheee---------------ee---
Confidence 888776543 37888876 56789999999999999998877622 2 66666665431 11
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC-
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG- 779 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g- 779 (1131)
....+..+++++.|.++++|.+++.. .....+....+|.+.|.+++++..+
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~~----~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNNC----SKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCCc----chhhhhhhhcccccccceeeecccCc
Confidence 11234578999999999999995422 2233334446799999999998765
Q ss_pred ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEE
Q 001178 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~v 858 (1131)
..+++++.|+++++|++...+...... + +........|...|.|++++|+.+++|+|+ |.+.+|
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~--------~-------~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPI--------V-------LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccc--------e-------ehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 467788889999999987632221100 0 000011226999999999999999999999 999999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
|+++.+....++.+|...|.++.|+| ..+++|++|.|++|+||.+.+..|+.++.||...|..+.|-.+|+.|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCC
Q 001178 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSK 995 (1131)
Q Consensus 939 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~ 995 (1131)
|-+++|+++++++... .+.| ...+.+++.++.+.++++| .|+.|.+|.-.+
T Consensus 569 GliKlWnikt~eC~~t-----lD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMT-----LDAH-NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred CcEEEEeccchhhhhh-----hhhc-cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 9999999999776433 3333 3789999999999988875 699999997544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=407.51 Aligned_cols=567 Identities=14% Similarity=0.212 Sum_probs=439.0
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.-.|.|..+|.+. ...|.+-++++..... ++..|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 3356677777765 4478888888765433 588999999999999999999999999999
Q ss_pred EEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc--CCC--cEEEEeCCCceeEEecCCccCeEEEeecccC
Q 001178 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG--DDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE 509 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s--~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~ 509 (1131)
+|||....+.+ ...+++.-.++|.+++|+.|+++ ++..+ .++ .+.+|| +|..+-.+.||...|+++.|-|+.
T Consensus 84 RIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 84 RIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCC
Confidence 99999774433 33467778899999999999995 44443 333 455666 677788999999999999998765
Q ss_pred CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe---cc
Q 001178 510 NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI---GF 586 (1131)
Q Consensus 510 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~ 586 (1131)
. -.+++|++|+.|.+|+-...+-...+..|..-|+++.|+|||.++++++. |+++++||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 4 57999999999999976555555667778889999999999999999997 9999999999999999987 55
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC-CCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|. ...|++.+.+|.|.+++..++.
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 55 8999999999999999999999999999999999988765431 122344454 4578899999999999887662
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
..+.+
T Consensus 312 -~~~~i-------------------------------------------------------------------------- 316 (603)
T KOG0318|consen 312 -VLKVI-------------------------------------------------------------------------- 316 (603)
T ss_pred -hhhee--------------------------------------------------------------------------
Confidence 22222
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1131)
.+|...|+++..+++++++++++-||.|.-|+...+...+-
T Consensus 317 ------------------~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~--------------------- 357 (603)
T KOG0318|consen 317 ------------------SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL--------------------- 357 (603)
T ss_pred ------------------cccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc---------------------
Confidence 34888999999999999999999999999998765433211
Q ss_pred cCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE--EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 826 NDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
....|...|.+++.+..+.++.++-|.++++.++.....-.. ++. .....+++..+ ++.+++..+.++ |.+..
T Consensus 358 --~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~-iv~l~ 432 (603)
T KOG0318|consen 358 --AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISD-IVLLQ 432 (603)
T ss_pred --ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCc-EEEEe
Confidence 123689999999999989888888899999998865433222 222 22334888888 665665555544 44444
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
-.++ +.... -.-...+++++|++..++.|+.|+.|++|.+...+....... ..+..+++.+++|||+.+||++
T Consensus 433 ~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~----~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 433 DQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL----LEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred cCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee----ecccCCceEEEECCCCcEEEEe
Confidence 2222 12222 233578999999999999999999999999998664322221 1233799999999999999998
Q ss_pred e-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 984 H-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 984 ~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
+ .+.+.+||+.+.+........ |.+.|.+++|||+.+++|+|+.|-.|.||++..-.....+... |..
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~F--HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA---------H~~ 574 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWAF--HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA---------HLG 574 (603)
T ss_pred ccCCcEEEEEcccCceecceeee--eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc---------ccc
Confidence 7 789999999988774443332 3899999999999999999999999999999876655444432 344
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.|+. +.|. ++..+++.|.|.+|++|.+.
T Consensus 575 gVn~--v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 575 GVNS--VAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Ccee--EEEe--cCceEEeccCcceeEEeccc
Confidence 4554 5553 56899999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=422.55 Aligned_cols=582 Identities=16% Similarity=0.291 Sum_probs=459.6
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
-+.|++||.. +++ ...+.|.++|+.+++-.. ..-.+...|.+++.||+|.+|++....|
T Consensus 19 nl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~g 77 (893)
T KOG0291|consen 19 NLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDERG 77 (893)
T ss_pred cEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCCC
Confidence 4789999986 443 346799999998765432 1225677899999999999999999999
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc---------eeEEecCCccCeEE
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---------KLFQFEGHEAPVYS 502 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~h~~~v~~ 502 (1131)
...+-++.....+. .+ .-..+|.++.|||||+ +++.|. .+.+.||...+. ..+++.+|-..|.+
T Consensus 78 ~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~s 150 (893)
T KOG0291|consen 78 RALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITS 150 (893)
T ss_pred cEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeE
Confidence 99998887754332 12 2356899999999999 455444 568999993322 23566799999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---- 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---- 576 (1131)
+.|+ .|.++|++|+.|-.+++|.++..+. ...+.+|...|.+..|..+...+++.+. +|.+.+|....
T Consensus 151 i~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk----dG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 151 IDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK----DGALFVWTCDLRPPE 224 (893)
T ss_pred EEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec----CceEEEEEecCCCcc
Confidence 9995 5668999999999999999988776 5577889999999999999999999987 99999997651
Q ss_pred -------------------Cee---------e-EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 577 -------------------GAL---------K-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 577 -------------------~~~---------~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
++. . +.+.......+++.+|++.-+.|++|-..|...+|.+....+++.+.
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 111 0 11112222478899999999999999999999999999999999998
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECC-CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccc
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERV 706 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~ 706 (1131)
...+ +|..++|+..|..++.|+.. |.+.||+.....-.++
T Consensus 305 is~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------------------------------- 345 (893)
T KOG0291|consen 305 ISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------------------------------- 345 (893)
T ss_pred cccc--eeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------------------------------------
Confidence 7655 79999999999999999875 8999999866521110
Q ss_pred cCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEee
Q 001178 707 DRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALW 786 (1131)
Q Consensus 707 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 786 (1131)
. ++|...+.+++++|||..+++|+
T Consensus 346 -------------------------------------------------------Q-QgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 346 -------------------------------------------------------Q-QGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred -------------------------------------------------------c-cccccceeeEEECCCCcEEEecc
Confidence 0 44889999999999999999999
Q ss_pred ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCce
Q 001178 787 SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK 865 (1131)
Q Consensus 787 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~ 865 (1131)
+||.|++||.. .|.+... + ..|...|+.+.|+..|+.+++++ ||+|+.||+....
T Consensus 370 eDgKVKvWn~~----------------------SgfC~vT-F-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 370 EDGKVKVWNTQ----------------------SGFCFVT-F-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred CCCcEEEEecc----------------------CceEEEE-e-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 99999888753 3333332 1 26999999999999999999999 9999999999999
Q ss_pred eEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCC-cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 866 VMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 866 ~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
..+++..+.. .-.|++..| .|.++..|+.|. .|++|++++|+++..+.||.+||.+++|+|++..|+|++.|.+|++
T Consensus 426 NfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 426 NFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 9999986543 467888888 899999998886 5999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-----------------
Q 001178 944 WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ----------------- 1005 (1131)
Q Consensus 944 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~----------------- 1005 (1131)
||+-..... ...+.. ...+..++|+|||+-|++++ ||.|.+||+..+.....+.+.
T Consensus 505 W~if~s~~~-vEtl~i-----~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 505 WDIFSSSGT-VETLEI-----RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred EEeeccCce-eeeEee-----ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 998764211 111211 16789999999999999865 999999999876655333221
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccc--------------------------------
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM-------------------------------- 1053 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------- 1053 (1131)
.......+.+++|+||++|++|++.+.|++|++.++-++.++......
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 112468899999999999999999999999999998776666532111
Q ss_pred ------cCC------CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1054 ------SQA------SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1054 ------~~~------~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|+. +..-...|.+..|.|+| .++-++.++..| |.||.+.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 000 00001257778999999 568999999998 77887744
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-49 Score=403.79 Aligned_cols=534 Identities=16% Similarity=0.230 Sum_probs=424.2
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.-+|...++-..|||.|- ++|+|...|+|||||....+.+...+| ..-.++|..++|++|++
T Consensus 55 YtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef-----------------~v~aG~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEF-----------------QVLAGPIKDISWDFDSK 116 (603)
T ss_pred eccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeee-----------------eecccccccceeCCCCc
Confidence 346999999999999997 599999999999999987665544333 34578999999999999
Q ss_pred EEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 423 FIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
+|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.... .++||++|++|.+|+ ..-+.-.+++.|.
T Consensus 117 RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHS 190 (603)
T ss_pred EEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccc
Confidence 99877543 3455566 454444 68999999999999998876 899999999999999 7777778888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.++.|+| ||..+++++.||.|.+||-.+++....+. .|.+.|.+++|+||++.+++++. |.++++||+
T Consensus 191 kFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdV 264 (603)
T KOG0318|consen 191 KFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDV 264 (603)
T ss_pred cceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEe
Confidence 9999999965 57899999999999999999999988887 78889999999999999999987 899999999
Q ss_pred CCCeeeEEEecccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 575 SEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
.+.++++++..... ..+. +-|. +..|++.+.+|.|.+++......+..+.+|.. .|++++.+|++.++++|+
T Consensus 265 s~~slv~t~~~~~~v~dqqvG-~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVG-CLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGS 339 (603)
T ss_pred eccceEEEeecCCchhceEEE-EEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeec
Confidence 99999998875432 1233 3343 67899999999999999999998888876654 899999999999999999
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
.||.|.-|+...+..... .
T Consensus 340 yDG~I~~W~~~~g~~~~~---------------------------~---------------------------------- 358 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRL---------------------------A---------------------------------- 358 (603)
T ss_pred cCceEEEEecCCcccccc---------------------------c----------------------------------
Confidence 999999999877621000 0
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
...|...|.+++.+..+. +++.+.|.++++.++..........
T Consensus 359 -------------------------------g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~----- 401 (603)
T KOG0318|consen 359 -------------------------------GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEV----- 401 (603)
T ss_pred -------------------------------cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccce-----
Confidence 023788888888876665 6677777788887654322211110
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+ .......+++..+|+.+++.+....|.+..-.+. +.+.. ..-...+++++| ++..+|
T Consensus 402 ----------------~--~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~va 459 (603)
T KOG0318|consen 402 ----------------V--KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVA 459 (603)
T ss_pred ----------------e--ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEE
Confidence 0 1233344899999998888888666666652222 22222 234578999999 999999
Q ss_pred EEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 892 IGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
+|+.||.|+||.+..+.+ ...+..|.++|++++||||+.+||++...+.+.+||+.+.+..... ..-|...|.
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-----w~FHtakI~ 534 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-----WAFHTAKIN 534 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-----eeeeeeeEE
Confidence 999999999999987653 3457789999999999999999999999999999999997652221 122337899
Q ss_pred EEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 970 RVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+++|+|+..++|+|+ |..|.||+++.......+. ..|...|+.+.|- |...+++.+.|..|++|.+.
T Consensus 535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik--nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK--NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeCCCceEEEeccccceEEEEEccChhhheEec--cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 999999999999987 9999999998755443333 3346679999998 56678888999999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=411.37 Aligned_cols=550 Identities=16% Similarity=0.249 Sum_probs=431.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+++...|++++.||+|. +|++-...|...+-++.....++.. ..+.+|.|+.|||||++
T Consensus 52 ~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f--------------------~fk~~v~~i~fSPng~~ 110 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRF--------------------NFKRGVGAIKFSPNGKF 110 (893)
T ss_pred eecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEE--------------------eecCccceEEECCCCcE
Confidence 46889999999999997 5666677888888888776655432 22568999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCc-----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeEEecC
Q 001178 424 IGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFEG 495 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~~~~~ 495 (1131)
+|.|.. +.+.||....... .....++.+|...|.++.|+.|.+ +|++||.|.++++|+ . .+-....+.+
T Consensus 111 fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~g 187 (893)
T KOG0291|consen 111 FAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNG 187 (893)
T ss_pred EEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccC
Confidence 998864 5899998765322 234456789999999999999999 899999999999999 2 3333677889
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----------------------Cce-----------eEEecCCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS-----------RVDYDAPG 541 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~-----------~~~~~~~~ 541 (1131)
|.+.|.+..|. .+...+++.+.||.+.+|.... ++. ..-+....
T Consensus 188 Hkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 188 HKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred CCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 99999988774 4446799999999999997761 111 01122233
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-CcEEEEEcCCC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-NQIKFWDMDNV 620 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~ 620 (1131)
..+++.+|++..+.|+++-. .|...+|.+....+++.+.-... .|..++|+..|.+++.|+.. |.+.||+..+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 57899999999999999876 88899999999999998876444 89999999999999998764 89999999887
Q ss_pred eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 621 ~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
.-+...+ +|...+++++++|||+++++|++||.|+|||...+. ++.
T Consensus 341 sYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~v------------------------------- 386 (893)
T KOG0291|consen 341 SYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFV------------------------------- 386 (893)
T ss_pred ceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEE-------------------------------
Confidence 6665555 455589999999999999999999999999987761 111
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCc
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1131)
++ ..|...|+.+.|+..|.
T Consensus 387 ----------------------------------------------------------TF---teHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 387 ----------------------------------------------------------TF---TEHTSGVTAVQFTARGN 405 (893)
T ss_pred ----------------------------------------------------------Ee---ccCCCceEEEEEEecCC
Confidence 11 23889999999999999
Q ss_pred eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-C-CeEEE
Q 001178 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G-GKVSL 858 (1131)
Q Consensus 781 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d-g~i~v 858 (1131)
.+++.+-||+++.||+..... .+ .+.........|++..|.|..++.|+ | =.|.|
T Consensus 406 ~llssSLDGtVRAwDlkRYrN----------------------fR-Tft~P~p~QfscvavD~sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRN----------------------FR-TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEeecCCeEEeeeecccce----------------------ee-eecCCCceeeeEEEEcCCCCEEEeeccceEEEEE
Confidence 999999999999999864211 00 01112345667899999999999998 5 45999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
|++++|+.+-.+.+|.++|.+++|+| .+..||+|++|.+|++||+-... .+..++ +...+.+++|+|||+.|+++.-
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEe
Confidence 99999999999999999999999999 89999999999999999987553 333444 6778999999999999999999
Q ss_pred CCcEEEEEcCCCceeeee--------------eeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceee
Q 001178 938 DAQLIFWNTDTWEKRKSI--------------AIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQW 1002 (1131)
Q Consensus 938 Dg~v~lwd~~~~~~~~~~--------------~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~ 1002 (1131)
||.|.+||++.+...... .+...........+.+++|+||.++++| ....|.+|++.++-.++.+
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 999999999875543211 1111111223578899999999998885 5788999999887666554
Q ss_pred ecCCCC-----------------------------------------------------CCCeEEEEEccCCCEEEEEec
Q 001178 1003 VPQDVL-----------------------------------------------------SSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 1003 ~~~~~~-----------------------------------------------------~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
.....+ .-.|+++.|||.|+-+|.++.
T Consensus 621 qiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatT 700 (893)
T KOG0291|consen 621 QISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATT 700 (893)
T ss_pred EeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecc
Confidence 322110 124789999999999999886
Q ss_pred CCcEEEEECCCCceee
Q 001178 1030 DGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~ 1045 (1131)
.| +.||.+++.-+..
T Consensus 701 EG-l~IYsld~~~~FD 715 (893)
T KOG0291|consen 701 EG-LLIYSLDTTILFD 715 (893)
T ss_pred cc-eEEEecCCceEEc
Confidence 65 6788887655433
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-48 Score=412.70 Aligned_cols=525 Identities=14% Similarity=0.279 Sum_probs=412.3
Q ss_pred cccCCCCCcccccCCCcccceeee-ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACT-MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1131)
++.|+.-.+.+|..........-. .....+|+|+.-+||.- +||+|..||.|+||+..++....
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------- 101 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------- 101 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee--------------
Confidence 555666667777776542222222 23456999999999885 79999999999999999876543
Q ss_pred ceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 399 MLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 399 ~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++.||...|+++.|+..|.+||+|+.|+.|.+||+-....+ ..+.||...|+..-|..+.+ +++++|.|+
T Consensus 102 -----tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl---~rL~GHkd~iT~~~F~~~~~--~lvS~sKDs 171 (888)
T KOG0306|consen 102 -----TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL---FRLRGHKDSITQALFLNGDS--FLVSVSKDS 171 (888)
T ss_pred -----eecccccceEEEEEcccCceEeecCCCccEEEEEeccceee---EEeecchHHHhHHhccCCCe--EEEEeccCc
Confidence 57899999999999999999999999999999999875433 36899999999999998777 899999999
Q ss_pred cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee------E-------EecCC----
Q 001178 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------V-------DYDAP---- 540 (1131)
Q Consensus 479 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~-------~~~~~---- 540 (1131)
.|++|| .+..+..+...|.+.++++++.+ +.+++++.|+.+++|++...... . .....
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~ 247 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGRE 247 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCce
Confidence 999999 88889999999999999999864 58999999999999998210000 0 00000
Q ss_pred ------------------------------------------------------------------------CceEEEEE
Q 001178 541 ------------------------------------------------------------------------GLWCTTML 548 (1131)
Q Consensus 541 ------------------------------------------------------------------------~~~v~~~~ 548 (1131)
...+.++.
T Consensus 248 i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~d 327 (888)
T KOG0306|consen 248 INLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFD 327 (888)
T ss_pred eEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEE
Confidence 01234444
Q ss_pred EccCCCE---EEEEeecCCCCceEEEEeCCC-Cee--------eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 549 YSADGSR---LFSCGTSKEGDSHLVEWNESE-GAL--------KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 549 ~s~~g~~---l~~~~~~~~~~~~i~iwd~~~-~~~--------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
+.|.+.. |+.-. ++.+..|.+.. +.. -..+.+|.. .|.+++++.+...+++| ..+.|++|+
T Consensus 328 v~~~~~~~~~lv~l~-----nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sg-a~~SikiWn 400 (888)
T KOG0306|consen 328 VTPSGGTENTLVLLA-----NNTVEWYSLENSGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASG-AGESIKIWN 400 (888)
T ss_pred EEecCCcceeEEEee-----cCceEEEEeccCCCCCccccccceeeeccchh-heeEEEeecCceeeeec-CCCcEEEEE
Confidence 4443321 22211 44555555543 111 123455555 89999999876555555 457899999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecc
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1131)
..+.+++.++... -+.+..|-|.++++++|...|.+.+||+... .....+
T Consensus 401 ~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti------------------------- 450 (888)
T KOG0306|consen 401 RDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETI------------------------- 450 (888)
T ss_pred ccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhh-------------------------
Confidence 9999999998754 5788899999999999999999999998765 222211
Q ss_pred cccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee
Q 001178 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1131)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1131)
..|.+.|.+++.+
T Consensus 451 -------------------------------------------------------------------~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 451 -------------------------------------------------------------------RAHDGAIWSISLS 463 (888)
T ss_pred -------------------------------------------------------------------hccccceeeeeec
Confidence 2388999999999
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCe
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1131)
||+..+++++.|.++++|++......| |.. -++..+...+.+ ...+.|.|+.+||||++||++- |++
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~-gt~-----~k~lsl~~~rtL------el~ddvL~v~~Spdgk~LaVsLLdnT 531 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVP-GTQ-----KKVLSLKHTRTL------ELEDDVLCVSVSPDGKLLAVSLLDNT 531 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccC-ccc-----ceeeeeccceEE------eccccEEEEEEcCCCcEEEEEeccCe
Confidence 999999999999999999986533211 110 011111111111 2578899999999999999998 999
Q ss_pred EEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
|+||-+++.+....+-+|.-+|.|+..|| |+++++||+.|.+|++|-++-|.|...+-+|.+.|.++.|-|+...+.++
T Consensus 532 VkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~ 610 (888)
T KOG0306|consen 532 VKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTC 610 (888)
T ss_pred EEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEe
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 936 GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 936 ~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
|.|+.|+-||-+. .++++.+.+| ...|+++
T Consensus 611 gKD~kvKqWDg~k-----------------------------------------------Fe~iq~L~~H---~~ev~cL 640 (888)
T KOG0306|consen 611 GKDGKVKQWDGEK-----------------------------------------------FEEIQKLDGH---HSEVWCL 640 (888)
T ss_pred cCcceEEeechhh-----------------------------------------------hhhheeeccc---hheeeee
Confidence 9999999998766 3445555555 6799999
Q ss_pred EEccCCCEEEEEecCCcEEEEECCC
Q 001178 1016 AYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
+.+|+|.++++++.|.+|++|....
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999998655
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=394.25 Aligned_cols=326 Identities=24% Similarity=0.379 Sum_probs=289.3
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+..++. +.++|...|.|++|||||+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred cCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccEEEEEEECCCcc
Confidence 3469999999999999985 9999999999999999987765 6889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-----CCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-----PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-----d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
.||+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+||| ..+.++..+.+|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred hhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccC
Confidence 999999999999999999987653 6899999999999976 455 799999999999999 788899999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-----------CC------------
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-----------DG------------ 553 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-----------~g------------ 553 (1131)
+.+|+|++|-. ..++++|+.|++|++|+...+.....+.+|.++|+.++.+. .+
T Consensus 247 T~~VTCvrwGG---~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 247 TASVTCVRWGG---EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred ccceEEEEEcC---CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 99999999842 25999999999999999999888889999999999998872 23
Q ss_pred -------------CEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 554 -------------SRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 554 -------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..|++++. |.++.+|+... .+++..+.+|.. .|+.+.|+||+.++++++.|..|++|+..+
T Consensus 324 Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCC
Confidence 34889886 89999999754 457778888777 899999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
|+.+.++.+|- ..|+.++|+.|.++|++|+.|.++++|++.+. +...
T Consensus 399 Gk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~------------------------------ 445 (480)
T KOG0271|consen 399 GKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQ------------------------------ 445 (480)
T ss_pred cchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecc------------------------------
Confidence 99999988654 48999999999999999999999999998765 1111
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1131)
.+ ++|..+|.++.++|||
T Consensus 446 -----------------------------------------------------------DL---pGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 446 -----------------------------------------------------------DL---PGHADEVFAVDWSPDG 463 (480)
T ss_pred -----------------------------------------------------------cC---CCCCceEEEEEecCCC
Confidence 11 3388999999999999
Q ss_pred ceEEEeeecceeeEEe
Q 001178 780 IGILALWSNGVQKLWK 795 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~ 795 (1131)
..++.++.|..+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999984
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=390.65 Aligned_cols=367 Identities=21% Similarity=0.317 Sum_probs=301.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||.++|.|++|+|+|+.||+|+.|.++++||+.+.... ++..+|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---FTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc---eeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 47799999999999999999999999999999999996544 47899999999999999999 79999999999999
Q ss_pred e-CCCcee-EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 484 D-LSGRKL-FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 484 d-~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
| .+|+++ ..+.+|...|++++|.|-. ..|..++|++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 6799999999999996521 3455667777765
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
||.++|||...+.++..+.+|.. .|+|++|..+ .++++|+.|++|++|+...|.+...+..|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 88899999888999999999887 8999999754 5899999999999999999999999998888 89999988
Q ss_pred CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+- .|-+|..|.+=+-....+ ....+.++.... ..+
T Consensus 298 Tdy-~LRtgaf~~t~~~~~~~s-e~~~~Al~rY~~-------------------~~~----------------------- 333 (480)
T KOG0271|consen 298 TDY-VLRTGAFDHTGRKPKSFS-EEQKKALERYEA-------------------VLK----------------------- 333 (480)
T ss_pred chh-hhhccccccccccCCChH-HHHHHHHHHHHH-------------------hhc-----------------------
Confidence 652 344444443222111111 011111211110 000
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
..+..++++++|.++.+|+......
T Consensus 334 -------------------------------------------------------~~~erlVSgsDd~tlflW~p~~~kk 358 (480)
T KOG0271|consen 334 -------------------------------------------------------DSGERLVSGSDDFTLFLWNPFKSKK 358 (480)
T ss_pred -------------------------------------------------------cCcceeEEecCCceEEEeccccccc
Confidence 1245678888888888776432111
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 880 (1131)
.+.. +. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|.+|-..|..+
T Consensus 359 ---------------------pi~r-mt-gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 359 ---------------------PITR-MT-GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV 415 (480)
T ss_pred ---------------------chhh-hh-chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE
Confidence 1111 11 6999999999999999999999 9999999999999999999999999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+|+. |.++|++|+.|.++++|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 416 awsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 416 AWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred Eecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=401.95 Aligned_cols=581 Identities=15% Similarity=0.242 Sum_probs=435.8
Q ss_pred cEEEEEEe-cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 349 SVVSMDFH-PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fs-pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
.+..+..+ ..|++ +|+ +..-.|.+||+.+|+..... +.......|+|++-+||.-+||+|
T Consensus 23 N~~~~~~~~~~Gr~-va~-~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG 83 (888)
T KOG0306|consen 23 NINFVVKRSGKGRA-VAV-SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG 83 (888)
T ss_pred ceeEEEeecCCCcE-EEE-eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence 34444333 35775 333 33458999999999655421 122334689999999999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
..||.|+||+..++... .++.||...|+.+.|...|. .|+|||.|+.|.+|| ....-+..++||...|+..-|.
T Consensus 84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL 158 (888)
T ss_pred ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence 99999999999987433 47899999999999999999 899999999999999 7777789999999999988775
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC---------
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--------- 577 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--------- 577 (1131)
. +..++++.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++...
T Consensus 159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~ 230 (888)
T KOG0306|consen 159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY 230 (888)
T ss_pred C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence 4 447999999999999999999999999999999999999988 67777775 888999998210
Q ss_pred ---eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE--------Eecc-----------------
Q 001178 578 ---ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS--------TEAE----------------- 629 (1131)
Q Consensus 578 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~----------------- 629 (1131)
+...++.....+..-.+...+++.++++-+.|..+.+|.+.+.+.+.. .+.+
T Consensus 231 ~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~ 310 (888)
T KOG0306|consen 231 ISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE 310 (888)
T ss_pred ceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH
Confidence 011112111111233355667778899999999999998865321100 0000
Q ss_pred -------CCCCCcceEEEcCCCCE--EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccc
Q 001178 630 -------GGLPSLPRLRFNKEGNL--LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVL 700 (1131)
Q Consensus 630 -------~~~~~i~~v~~sp~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 700 (1131)
.....+.++.+-|.++. .++.-.++++..|.+... .. .+|.
T Consensus 311 i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s-~~----------------------------~~p~- 360 (888)
T KOG0306|consen 311 IKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS-GK----------------------------TSPE- 360 (888)
T ss_pred HHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC-CC----------------------------CCcc-
Confidence 00113455666554321 122244556666554331 00 0000
Q ss_pred cccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCc
Q 001178 701 SKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGI 780 (1131)
Q Consensus 701 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 780 (1131)
+.....+.+ .+|...|.++++|.+..
T Consensus 361 ---------------------------------------------------~~~~~~i~~---~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 361 ---------------------------------------------------ADRTSNIEI---GGHRSDVRSLCVSSDSI 386 (888)
T ss_pred ---------------------------------------------------ccccceeee---ccchhheeEEEeecCce
Confidence 001111222 34999999999998887
Q ss_pred eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEE
Q 001178 781 GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLF 859 (1131)
Q Consensus 781 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vw 859 (1131)
.+++++ ++.+++|+.. +.++++. -....+.+..|-|.+++++.|. .|.+.+|
T Consensus 387 ~~~Sga-~~SikiWn~~----------------------t~kciRT----i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 387 LLASGA-GESIKIWNRD----------------------TLKCIRT----ITCGYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred eeeecC-CCcEEEEEcc----------------------CcceeEE----eccccEEEEEecCCCceEEEeccCCceEEE
Confidence 665554 4577777643 3333332 1244788999999999999999 7999999
Q ss_pred ECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-----ceeEEeec-------ccccCeeEEEEcc
Q 001178 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-----DEVKTKLK-------GHQKHITGLAFST 927 (1131)
Q Consensus 860 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-----~~~~~~~~-------~h~~~V~~l~~s~ 927 (1131)
|+.+...+.+.+.|.+.|..++.+| |+..+++|+.|.+|++||..- +.....+. .-...|.|+.+||
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 9999999999999999999999999 899999999999999999752 21111111 1346799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCC
Q 001178 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQD 1006 (1131)
Q Consensus 928 dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~ 1006 (1131)
||++||.+=-|.+|++|-+++-+ ......+| .-+|.++..|||++++++|+ |..|+||-++-|.|-+.+..|
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlK-----FflsLYGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH- 591 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH- 591 (888)
T ss_pred CCcEEEEEeccCeEEEEEeccee-----eeeeeccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-
Confidence 99999999999999999999833 22233333 37999999999999999975 999999999999999999888
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
...|.++.|-|...++++++.|+.|+-||.++.+.+..+.+|+ ..|+++++ +| +|.+++++|.|.
T Consensus 592 --dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~----------~ev~cLav--~~-~G~~vvs~shD~ 656 (888)
T KOG0306|consen 592 --DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH----------SEVWCLAV--SP-NGSFVVSSSHDK 656 (888)
T ss_pred --cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch----------heeeeeEE--cC-CCCeEEeccCCc
Confidence 8899999999999999999999999999999999888887644 45665444 56 678999999999
Q ss_pred cEEEEecCC
Q 001178 1087 SVKVIEPSE 1095 (1131)
Q Consensus 1087 ~v~iW~~~~ 1095 (1131)
+|++|.-..
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999999754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=368.20 Aligned_cols=610 Identities=14% Similarity=0.190 Sum_probs=407.6
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe--
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-- 428 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-- 428 (1131)
..++.+|-.. ++|. -....|.+||.+..++.+ ++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence 3455566544 2332 124589999988765433 5778888999999999999999985
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC--CCcEEEEeCCCceeEEecCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
....++||++.....+. ++..|...|+|++|+|.++ ++++.+. |-.|.+||........-..-...|..++|
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f- 173 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF- 173 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEE-
Confidence 56679999999876443 7889999999999999999 6777664 55677888332222222334567888888
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEE------------ccCCCEEEEEeecCCCCceEEE
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLY------------SADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+.+|.++++.+ ...|++|.++...... .+.+...-.-.+.+ ..+..+.++. .|.+.-
T Consensus 174 -sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 174 -SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred -ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 56778888776 5789999988665222 11111100000110 0111222221 233333
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----------------------
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1131)
+. +.+++-+...-.....+|++.+ .+++++|+.+|.|++|+..+...+.+++..
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 32 2222222211122245566665 579999999999999998775544433211
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1131)
...+...++.|++....|.+...|..++|||+.+-.+.-+...
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s------------------------------------- 364 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS------------------------------------- 364 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceee-------------------------------------
Confidence 1112334688999889999999999999999976532211000
Q ss_pred CCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecc
Q 001178 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 710 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
-......+|++...... .|...- +.-|.+ .++++++|+
T Consensus 365 --------------------------~lyHS~ciW~Ve~~p~n------------v~~~~~---aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 365 --------------------------MLYHSACIWDVENLPCN------------VHSPTA---ACLPRG-CFTTCSSDG 402 (1080)
T ss_pred --------------------------eeeccceeeeecccccc------------ccCccc---ccCCcc-ceeEecCCC
Confidence 00022345555442210 000000 111112 255666666
Q ss_pred eeeEEeecCCCCCCC--Cccceee---------ec-eeecCCCCcccccC-CCCCCCCCeeEEEecCCCCEEEEEe-CCe
Q 001178 790 VQKLWKWNRTEQNPS--GKATAAV---------AP-QHWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1131)
Q Consensus 790 ~i~iw~~~~~~~~~~--~~~~~~~---------~~-~~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1131)
+|++|++........ .++.... +. .+.|...+..-... -.-.....++++++||+|++||+|+ .|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 777776655211100 0000000 00 00011100000000 0003567899999999999999999 799
Q ss_pred EEEEECCCceeEEEEeCCCCCeeEEEEeCC--CCcEEEEEeCCCcEEEEEeec-ceeEEeecccccCeeEEEEccCC--C
Q 001178 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQ--DNNIIAIGMEDSTIQIYNVRV-DEVKTKLKGHQKHITGLAFSTNL--N 930 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg--~ 930 (1131)
++||++...+....+..|..+|.|+.||.. ..++||+++.|..|.|||+.. ..++.++.+|...|+++.|.-.| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 999999999999999999999999999852 467999999999999999874 46778899999999999998877 7
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCC---CCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCC
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL---PVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQD 1006 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~---~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~ 1006 (1131)
.++++|.|+.|++--....... ...+.+++ ...+..++..|..+++++ +.|..|+||++.+++..+.|.+.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g----~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSG----RLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred EEEeccCchhhheehhccccCc----eeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 7999999998765543321111 11111111 156789999999999887 579999999999999999999999
Q ss_pred CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1007 VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.|.+....+...|.|-|||+...|+++.++|+-+|++..+..+|.. .+..+.|.+ |-..|++.+.||
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE------------~VTG~kF~n-DCkHlISvsgDg 705 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE------------AVTGVKFLN-DCKHLISVSGDG 705 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch------------heeeeeecc-cchhheeecCCc
Confidence 8888999999999999999999999999999999999998876542 233588988 568999999999
Q ss_pred cEEEEecCC
Q 001178 1087 SVKVIEPSE 1095 (1131)
Q Consensus 1087 ~v~iW~~~~ 1095 (1131)
+|++|+++.
T Consensus 706 CIFvW~lp~ 714 (1080)
T KOG1408|consen 706 CIFVWKLPL 714 (1080)
T ss_pred eEEEEECch
Confidence 999999964
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=339.34 Aligned_cols=583 Identities=15% Similarity=0.169 Sum_probs=436.3
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
..|..-|+.++++.+.+.+..+||.+.-..+. +-+.+...|+|++=..+--+.|++ +.
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 56666676788899999999999998766654 234678899998866554444433 45
Q ss_pred EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-cee----EEecCCccCeEEEeec
Q 001178 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKL----FQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~----~~~~~h~~~v~~~~~~ 506 (1131)
|.+|.. |+.++ ..+.+|.+.|.-+.-- |. .++++..++.+.||+ ..+ ..+ ..++...+.|+++. |
T Consensus 97 i~~~~r--gk~i~--~~~~~~~a~v~~l~~f--Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIR--HTTLLHGAKVHLLLPF--GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEE--EEeccccceEEEEeee--cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 33233 3466788777776544 55 689999999999999 442 221 11222233377775 6
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 7766678999999999999999999999999999999999999999899999886 999999999999999999854
Q ss_pred cCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 587 RKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+.|+.++|..||+ .+++|+..|.+-+||++..+.+..+.. .|...+....|-|....+++++.|+.+++|-..++.
T Consensus 244 -~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 -WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred -ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 45899999999997 555677779999999999888776652 223478999999999999999999999999766441
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
-..+.+..
T Consensus 322 g~pR~LR~------------------------------------------------------------------------ 329 (910)
T KOG1539|consen 322 GVPRLLRS------------------------------------------------------------------------ 329 (910)
T ss_pred Ccchheee------------------------------------------------------------------------
Confidence 11111100
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEee-cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYT-NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1131)
..+|..+..++.|- .+|..+...+.|++++.+++....++.+-.. ......++.+
T Consensus 330 -----------------R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~ 385 (910)
T KOG1539|consen 330 -----------------RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKV 385 (910)
T ss_pred -----------------ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccc
Confidence 02366777777776 6788888889999888877655433221110 1111111111
Q ss_pred ccC-CCCCCCCCeeEEEecCC-----CCEEEEEe-CCeEEEEECCCcee-EEEEe-----CCCCCeeEEEEeCCCCcEEE
Q 001178 825 TND-VPENAEDVVPCVALSKN-----DSYVMSAG-GGKVSLFNMMNFKV-MTTFM-----SPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 825 ~~~-~~~~~~~~i~~l~~s~d-----g~~la~~~-dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~~~~~la 891 (1131)
... ...-.-.+|..+++... .+.+++.- +...+.|+..+... ...+. .....+++++.++ .|++.+
T Consensus 386 ~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~ 464 (910)
T KOG1539|consen 386 NVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVF 464 (910)
T ss_pred cccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEE
Confidence 000 00012345666666432 22333333 57799999987655 22232 2346799999999 999999
Q ss_pred EEeCCCcEEEEEeecceeEEee---cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
.|+..|+|-+|++++|-....+ ..|.++|++++...-++.+++++.+|-+++||.++........ ....+
T Consensus 465 IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~ 537 (910)
T KOG1539|consen 465 IGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSI 537 (910)
T ss_pred EeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-------cCCCc
Confidence 9999999999999999888888 6899999999999889999999999999999999855322221 12567
Q ss_pred eEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEe
Q 001178 969 TRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1047 (1131)
..+..+.....+++ .+|-.|+++|..+.+.++.+.+| ...|++++|||||++|++++.|++|++||+.++.++..+
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 78888888777776 46889999999999999999988 899999999999999999999999999999999998877
Q ss_pred cCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-CcEEEEec
Q 001178 1048 APSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEP 1093 (1131)
Q Consensus 1048 ~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-g~v~iW~~ 1093 (1131)
.... -++.+.|+| .+++|||...| .-|++|.-
T Consensus 615 ~vd~-------------~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 615 LVDS-------------PCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCC-------------cceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 5322 245699999 67899999999 56999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=335.52 Aligned_cols=304 Identities=19% Similarity=0.292 Sum_probs=256.9
Q ss_pred cceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCC--CcccccccceeecccccccceeceeccCCCCCEEEE
Q 001178 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL--RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 338 ~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
....+.++|+.+|.+++|+|-..-++|+|+.|-+.++|++.. +.......+| .|...-- --......|+++
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-----h~~~~~~--~s~~~nkdVT~L 241 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-----HCIREGG--KSVPSNKDVTSL 241 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-----hhhhhhc--ccCCccCCcceE
Confidence 345556779999999999998766899999999999999874 1111100000 0000000 001224679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
+|+.+|..||+|+.||.+++|+..++. + .++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|.....+.
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l-~---~tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNL-I---STLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchh-h---hhhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEeee
Confidence 999999999999999999999987743 2 26888999999999999999 899999999999999 8999999999
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
-|..+-..+.|.. ...+++++.|+.|+++.+....+..++.+|...|.++.|+|.|.+|++++. |+++++|+.
T Consensus 316 ~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~TlkiWs~ 388 (524)
T KOG0273|consen 316 FHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKIWSM 388 (524)
T ss_pred eccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEeeec
Confidence 9998877777743 257999999999999999999999999999999999999999999999987 999999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCC---------CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTR---------NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
........+..|.. .|..+.|+|++ ..+++++.|++|++||+..+.++..+..|.. +|++++|+|+|+
T Consensus 389 ~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ 465 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGR 465 (524)
T ss_pred CCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCc
Confidence 98889999998877 78889999976 3789999999999999999999999876654 899999999999
Q ss_pred EEEEEECCCcEEEEecCCC
Q 001178 646 LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~ 664 (1131)
++|+|+.||.|.+|+..++
T Consensus 466 ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 466 YLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEecCCCCeeEeccccch
Confidence 9999999999999998776
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=328.84 Aligned_cols=593 Identities=15% Similarity=0.201 Sum_probs=408.3
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC---EEEEEeCC
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFTK 430 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~d 430 (1131)
.|.|.+ ++|.|. ...|.+||..+.... ..+.||..+|+|+.|-|+.+ ++++|+.|
T Consensus 21 sw~~~~--~vafGa-~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD 78 (764)
T KOG1063|consen 21 SWGPGG--LVAFGA-GPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDSD 78 (764)
T ss_pred cccccc--eEEecC-CceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccCC
Confidence 445655 466664 568999998765222 25889999999999999888 89999999
Q ss_pred CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce---eEEecCCccC--eEEEee
Q 001178 431 HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK---LFQFEGHEAP--VYSVCP 505 (1131)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~h~~~--v~~~~~ 505 (1131)
+.|++|.++. +.+.....+.+|...+ +++..... .....+.|+++.+||..+.. +..++-..+. ..|+++
T Consensus 79 ~~v~lW~l~~-~~~~~i~~~~g~~~~~--~cv~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~ 153 (764)
T KOG1063|consen 79 GRVILWKLRD-EYLIKIYTIQGHCKEC--VCVVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAA 153 (764)
T ss_pred CcEEEEEEee-hheEEEEeecCcceeE--EEEEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhh
Confidence 9999999994 3455666777776554 45543333 22223789999999954433 2222222222 234555
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCC--ceeEEecCCCceEEEEEEccCCC---EEEEEeecCCCCceEEEEeCCCCe--
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSADGS---RLFSCGTSKEGDSHLVEWNESEGA-- 578 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~~i~iwd~~~~~-- 578 (1131)
.+.++.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|++|.+.-+.
T Consensus 154 ~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 154 LKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDDE 229 (764)
T ss_pred hccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCCc
Confidence 55444345566677788888865433 34457889999999999987554 455554 38999999764222
Q ss_pred -------------------eeEE----------EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEe
Q 001178 579 -------------------LKRT----------YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTE 627 (1131)
Q Consensus 579 -------------------~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~ 627 (1131)
.... +.||.+ .|.++.|+|.+..|++++.|.++.+|...+. --+....
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 1111 226555 8999999999999999999999999987654 3332222
Q ss_pred cc---CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccc
Q 001178 628 AE---GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAE 704 (1131)
Q Consensus 628 ~~---~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~ 704 (1131)
.. +.........|+|+++.+++-+..|..++|...+.
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---------------------------------------- 348 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---------------------------------------- 348 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc----------------------------------------
Confidence 21 22334788999999999999999999999983221
Q ss_pred cccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEE
Q 001178 705 RVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1131)
Q Consensus 705 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1131)
..|.. .+...+|...|..++|.|.|.++++
T Consensus 349 -------------------------------------~~w~~-------------~~~iSGH~~~V~dv~W~psGeflLs 378 (764)
T KOG1063|consen 349 -------------------------------------TFWTQ-------------EPVISGHVDGVKDVDWDPSGEFLLS 378 (764)
T ss_pred -------------------------------------cceee-------------ccccccccccceeeeecCCCCEEEE
Confidence 01110 1112458899999999999999999
Q ss_pred eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC-CeEEEEECC-
Q 001178 785 LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMM- 862 (1131)
Q Consensus 785 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~- 862 (1131)
.+.|.+-|+|---. +. .-|. ...-+.-|...+.|++|-+....+++|.| ..+|+|+..
T Consensus 379 vs~DQTTRlFa~wg-------~q------~~wH-------EiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 379 VSLDQTTRLFARWG-------RQ------QEWH-------EIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred eccccceeeecccc-------cc------ccee-------eecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 99999999875321 00 0011 11112258888999999885556666664 568888764
Q ss_pred ------------------------------------------Cce---------------------------------eE
Q 001178 863 ------------------------------------------NFK---------------------------------VM 867 (1131)
Q Consensus 863 ------------------------------------------~~~---------------------------------~~ 867 (1131)
+|. .+
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 000 01
Q ss_pred EEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEE
Q 001178 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 868 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
.++-+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.
T Consensus 519 ~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred HHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 12236777899999999 999999998664 499999999888889999999999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCc--ccceeeecCCCCCCCeEEEEEcc
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
+|+........... .. ...|..-|....|+|++.+++++ .|..|.+|..... +.+..+.. ..++.+|+++++.|
T Consensus 598 l~~~~~~~~~e~~f-a~-~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRF-AC-LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLP 674 (764)
T ss_pred eeeeecccchhhhh-cc-ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeec
Confidence 99986543322221 11 22233567888999999988886 4999999999987 55555322 23478999999987
Q ss_pred -----CCCEEEEEecCCcEEEEECCCCceeeEecCCccccC--CCCCCCCccccEEEEEcCC---------CCCeEEEEe
Q 001178 1020 -----NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ--ASPNSSQTVFPLVVTSHPQ---------EPNQLAVGL 1083 (1131)
Q Consensus 1020 -----dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~v~~~p~---------~~~~l~s~~ 1083 (1131)
.+..+++|-+.|.|.+|....-........+..... ....+...|+ .++|.|. +...|++|+
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~~~~~l~la~~g 752 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVEDKEWLNLAVGG 752 (764)
T ss_pred cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccccccceeEEeeec
Confidence 223778888999999999652111111111111100 1112344455 4667664 223679999
Q ss_pred cCCcEEEEecC
Q 001178 1084 TDGSVKVIEPS 1094 (1131)
Q Consensus 1084 ~Dg~v~iW~~~ 1094 (1131)
+|.+++++++.
T Consensus 753 ~D~~vri~nv~ 763 (764)
T KOG1063|consen 753 DDESVRIFNVD 763 (764)
T ss_pred ccceeEEeecc
Confidence 99999999875
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=334.43 Aligned_cols=639 Identities=15% Similarity=0.164 Sum_probs=404.3
Q ss_pred cccCCCCCcccccCCCcccceeeec-cCCCcEEEEEEecCCC--cEEEEEcCCCeEEEEECCCCcccccccceeeccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~--~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
++|.....+++|.+... ..+.++ +|..+|+|+.|-|+.+ ..+++|+.||.|++|.+........
T Consensus 28 vafGa~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------- 94 (764)
T KOG1063|consen 28 VAFGAGPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------- 94 (764)
T ss_pred EEecCCceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------
Confidence 56666666777766654 444455 5999999999999876 1388999999999999983332221
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEE
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
..+.+|. +.+++++.......+...|+++.+||.+..+. .....+.- -..--.|+++.++.+..+++.|
T Consensus 95 ------~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~G 165 (764)
T KOG1063|consen 95 ------YTIQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACG 165 (764)
T ss_pred ------EeecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEec
Confidence 1344554 44555554444444447899999999965541 11111211 1222356777775555577788
Q ss_pred cCCCcEEEEe-CCC--ceeEEecCCccCeEEEeecccCC-ccEEEEEecCCeEEEEeCCCCc------------------
Q 001178 475 GDDKLIRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKEN-IHFIFSTAVDGKIKAWLYDNVG------------------ 532 (1131)
Q Consensus 475 s~d~~i~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~------------------ 532 (1131)
+.+..|.++. ..+ +.+..+.||.+.|.+++|..... .-+|+++|.|..||+|.+....
T Consensus 166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~ 245 (764)
T KOG1063|consen 166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP 245 (764)
T ss_pred CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence 8888888887 433 45678899999999999975544 4688899999999999764322
Q ss_pred ---ee---E-------EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC--eeeEEEe----cccCCceEE
Q 001178 533 ---SR---V-------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYI----GFRKKSAGV 593 (1131)
Q Consensus 533 ---~~---~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~v~~ 593 (1131)
.. . .+.+|..+|.++.|.|.+..|++++. |.++.+|...+. -.+.... ++.......
T Consensus 246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWG 321 (764)
T ss_pred eeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceee
Confidence 00 0 12478899999999999999999887 889999986543 3332222 222335777
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhh
Q 001178 594 VQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
.-|+|+++.+++-+..|..++|.... ..........+|...|.+++|+|.|.++++.+.|.+-|++..-..+...+.+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeec
Confidence 88999999999999999999998332 33344444456777999999999999999999999999986542211111111
Q ss_pred ccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCC
Q 001178 673 TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1131)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~ 752 (1131)
+ ++..+..+.+++-- .....+++|...+.+|+|+......
T Consensus 402 -------R-----PQiHGyDl~c~~~v---------------------------n~~~~FVSgAdEKVlRvF~aPk~fv- 441 (764)
T KOG1063|consen 402 -------R-----PQIHGYDLTCLSFV---------------------------NEDLQFVSGADEKVLRVFEAPKSFV- 441 (764)
T ss_pred -------c-----cccccccceeeehc---------------------------cCCceeeecccceeeeeecCcHHHH-
Confidence 0 00111110011100 0012233444444444444332100
Q ss_pred ceeEEEEcCCCCCCccceEE-----EEeecCCceEEEeeecceeeE-EeecCCCCCCCCc--cceeeeceeecCCCC-cc
Q 001178 753 LQCRVVAMPESTDSASKVAR-----LLYTNSGIGILALWSNGVQKL-WKWNRTEQNPSGK--ATAAVAPQHWQPSNG-LL 823 (1131)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~-----l~~s~~g~~l~~~~~dg~i~i-w~~~~~~~~~~~~--~~~~~~~~~w~~~~~-~~ 823 (1131)
. .-..+.. ..-.|+|-.+-+.+-...-.. -+.+.+.....-. ..+.....+..+... .+
T Consensus 442 ---~---------~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 442 ---K---------SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred ---H---------HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 0 0001111 001111211111111000000 0000000000000 000000011111111 01
Q ss_pred ----cccCCCC--CCCCCeeEEEecCCCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 824 ----MTNDVPE--NAEDVVPCVALSKNDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 824 ----~~~~~~~--~~~~~i~~l~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+..+..+ +|...|.+++.+|+|+++|++. . ..|++|+..+...++.+..|.-.|+.++||| |+++|+
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LL 588 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLL 588 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEE
Confidence 1111111 7999999999999999999987 2 2499999999999999999999999999999 999999
Q ss_pred EEeCCCcEEEEEeeccee----EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEV----KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+.+.|.++.+|....... ....+.|+.-|.+..|+|++.++||+|+|++|++|........... +.........
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~--~~a~~~~~~a 666 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS--RFACLKFSLA 666 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh--hhchhccCCc
Confidence 999999999999864321 2337889999999999999999999999999999998876311111 1122233478
Q ss_pred ceEEEEcCC-----CcEEEEE-eCCeEEEEeCC---------CcccceeeecCCCCCCCeEEEEEccC----------CC
Q 001178 968 ETRVQFHSD-----QVRLLVN-HETQLAIYDGS---------KMECIRQWVPQDVLSSPISSAAYSCN----------SQ 1022 (1131)
Q Consensus 968 v~~v~~s~d-----~~~l~~~-~d~~i~vwd~~---------~~~~~~~~~~~~~~~~~v~~i~~s~d----------g~ 1022 (1131)
++.+++.|- +..+++| ..|.|.+|... +......+..+.++...|+.++|+|- ..
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l 746 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWL 746 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccccee
Confidence 888888763 2255666 47999999855 12222333444556889999999974 23
Q ss_pred EEEEEecCCcEEEEECC
Q 001178 1023 LIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1023 ~l~s~~~dg~i~vwd~~ 1039 (1131)
.|++|++|..++++++.
T Consensus 747 ~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 747 NLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEeeecccceeEEeecc
Confidence 57999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=305.59 Aligned_cols=294 Identities=23% Similarity=0.297 Sum_probs=255.0
Q ss_pred ecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+++ |++.|+.++..+.+..++.+++.|.++.+|++.......-. ....++||+..|..++.++||
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCC
Confidence 454 99999999999998889999999999999999765332211 122588999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC--ccC
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH--EAP 499 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h--~~~ 499 (1131)
++.++++.|+++++||+.+++..+ .|.||...|.+++|++|.+ .++||+.|++|++||.-|.+..++..+ .+.
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 999999999999999999986443 6899999999999999999 699999999999999888888777654 789
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
|.|++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++++. +|.+.+||+..++.
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKN 226 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCce
Confidence 99999999987899999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-------CCCcceEEEcCCCCEEEEEEC
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTA 652 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~v~~sp~~~~l~~~~~ 652 (1131)
+..+.. ...|.+++|+|+.-.|+. ..+..|+|||+.++..+..+..... .....+++|++||..|+.|..
T Consensus 227 lysl~a--~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 227 LYSLEA--FDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred eEeccC--CCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 877764 348999999998655444 4556699999999988877655422 223457899999999999999
Q ss_pred CCcEEEEecC
Q 001178 653 DQGIKILANA 662 (1131)
Q Consensus 653 dg~i~iw~~~ 662 (1131)
|+.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=331.99 Aligned_cols=283 Identities=17% Similarity=0.260 Sum_probs=263.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--C
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--G 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g 421 (1131)
++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. ++.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45778999999999998 69999999999999999886554 68899999999999996 6
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCe
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v 500 (1131)
..||+|+.||++++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876554 6899999999999999999 899999999999999 8888888899999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ ||..++||+.|..-+|||++++.++..+.+|..+|.++.|+|+|-.||+|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999965 6689999999999999999999999999999999999999999999999986 999999999999999
Q ss_pred EEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 581 RTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.++.+|.+ .|+.++|+| .|.+|++++.|+++++|...+..+++.+.+|.. .|.++.+++|+..+++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999877 899999998 678999999999999999999999999987765 89999999999999999999999999
Q ss_pred e
Q 001178 660 A 660 (1131)
Q Consensus 660 ~ 660 (1131)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=300.96 Aligned_cols=289 Identities=18% Similarity=0.251 Sum_probs=262.1
Q ss_pred eecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 342 CTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 342 ~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
++|+ |...|.++.|++|.++ +++++.||.+.|||.-+...... +.-...+|..+||+|.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS 108 (343)
T ss_pred EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence 5564 9999999999999985 99999999999999988776652 4455789999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCC--C-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 421 GNFIGVAFTKHLIHLYTYQGS--N-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~--~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|+++|+|+-|+...||++.+. + ......++.+|++.+.|+.|.+|+. |+|+|.|.++.+|| .+|+.+..|.+|
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence 999999999999999999864 2 2344457899999999999999776 99999999999999 999999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|+++.|.|+|.-+++++. |+..++||++.
T Consensus 186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRa 260 (343)
T KOG0286|consen 186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRA 260 (343)
T ss_pred cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecC
Confidence 999999999875 6789999999999999999999999999999999999999999999999986 99999999999
Q ss_pred CeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
.+.+..|.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+..|.+ .|.++..+|||..+++|+.|..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHh
Confidence 99888887432 23789999999999999999999999999999999999987766 8999999999999999999999
Q ss_pred EEEEe
Q 001178 656 IKILA 660 (1131)
Q Consensus 656 i~iw~ 660 (1131)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=328.84 Aligned_cols=598 Identities=13% Similarity=0.167 Sum_probs=384.7
Q ss_pred cccCCCCCcccccCCCcccceeeecc-CCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeeccccc
Q 001178 320 ATYPVPSQQATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNC 396 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 396 (1131)
++++++..++.+.++.-++. +.+. |...++|+||||+|+| +|+|- ..-.++||++..-..+.
T Consensus 52 ~aYpAGCvVVlfn~~~~tQ~--hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA------------ 116 (1080)
T KOG1408|consen 52 CAYPAGCVVVLFNVDSCTQS--HLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA------------ 116 (1080)
T ss_pred eeeccCcEEEEEcccccchh--heecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh------------
Confidence 56666666777777764432 3333 7779999999999995 89885 45579999998766554
Q ss_pred ccceeceeccCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 397 SMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 397 ~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
-+..|.-.|+|++|+|.++|+++.+. |-.|.+||.+...... -..-...|..++|+.||. +++|.
T Consensus 117 -------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~ 183 (1080)
T KOG1408|consen 117 -------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTS 183 (1080)
T ss_pred -------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeee
Confidence 26689999999999999999998765 5578889876543221 122345799999999999 78887
Q ss_pred cCCCcEEEEeCCCce-eEE---ecCCccCeEEEeecc-----cCCc---cEEEEEecCCeEEEEeCCCCceeEEe-cCCC
Q 001178 475 GDDKLIRVWDLSGRK-LFQ---FEGHEAPVYSVCPHQ-----KENI---HFIFSTAVDGKIKAWLYDNVGSRVDY-DAPG 541 (1131)
Q Consensus 475 s~d~~i~iwd~~~~~-~~~---~~~h~~~v~~~~~~~-----~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~ 541 (1131)
+ ...|++|.+.+.. ... +.+...-.-.+.++. -+.| .--++.+..|.+.-+.-+ ..+-++ ....
T Consensus 184 g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR--RLLDKWVqcRT 260 (1080)
T KOG1408|consen 184 G-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR--RLLDKWVQCRT 260 (1080)
T ss_pred e-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh--hhhhhhhhhhc
Confidence 7 4689999943322 111 111111111111100 0000 001111222333222111 110000 1112
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--------------------C---CceEEEEEeC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--------------------K---KSAGVVQFDT 598 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~v~~~~~s~ 598 (1131)
....+++++ .+++++++. +|.|++++..+-....++...+ . ...-++.|++
T Consensus 261 TnAnCIcVs--~r~I~cgCa----~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fde 334 (1080)
T KOG1408|consen 261 TNANCICVS--SRLIACGCA----KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDE 334 (1080)
T ss_pred cccceeeee--cceEEEeec----cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecC
Confidence 223455554 568888887 9999999987654433322110 0 0123467898
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCCCCcceEEEcCC-----------CCEEEEEECCCcEEEEecCCCch
Q 001178 599 TRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKE-----------GNLLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 599 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~v~~sp~-----------~~~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
....+.+...|..|+|||++.-+.+... ..-.|...|..+.--|. ...+++++.|++|++|++.....
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 8899999999999999999874432211 11111112333322220 23588999999999999876311
Q ss_pred hhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceee
Q 001178 667 ALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWEL 746 (1131)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~ 746 (1131)
-..+..+. ++.++... -......+++- |...-+++-
T Consensus 415 -n~vyrRNi--------------------ls~~l~ki-----~y~d~~~q~~~------------------d~~~~~fdk 450 (1080)
T KOG1408|consen 415 -NQVYRRNI--------------------LSANLSKI-----PYEDSTQQIMH------------------DASAGIFDK 450 (1080)
T ss_pred -cceeeccc--------------------chhhhhcC-----ccccCchhhhh------------------hccCCcccc
Confidence 00000000 00000000 00000000000 000001111
Q ss_pred ecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc
Q 001178 747 TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1131)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1131)
.. .........+.+++++|+|++|++|..-|++++|++..-+..
T Consensus 451 a~------------~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~------------------------ 494 (1080)
T KOG1408|consen 451 AL------------VSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT------------------------ 494 (1080)
T ss_pred cc------------hhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh------------------------
Confidence 00 000124567899999999999999999999999987542111
Q ss_pred CCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCC-CcEEEEEeCCCcEE
Q 001178 827 DVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQD-NNIIAIGMEDSTIQ 900 (1131)
Q Consensus 827 ~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~-~~~la~g~~dg~I~ 900 (1131)
...+.|..+|.|+.||. ..++||+++ |.-|.|||+.. ..+++++.+|...|+++.|.-.+ +..+++++.|..|.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 12236999999999985 357899999 78899999864 56778899999999999998733 26677888898875
Q ss_pred EEEeecceeEEeeccc-----ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 901 IYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
+--.....-...+..| ...+..++..|..+++++++.|+.|+||++++++..+.... ...+.+....+...|
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg---s~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG---SRDHEGDLIKVILDP 651 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc---cccCCCceEEEEECC
Confidence 4332211111122212 24688999999999999999999999999999886544322 223336778899999
Q ss_pred CCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 976 DQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 976 d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.|.|++++ +|.++.++|..+|+++.+..+| +..|+.+.|++|.+.|++.+.||.|+||.+..
T Consensus 652 SgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccchhheeecCCceEEEEECch
Confidence 99999985 7999999999999999999888 89999999999999999999999999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=341.58 Aligned_cols=278 Identities=20% Similarity=0.310 Sum_probs=240.5
Q ss_pred ccccCCCcccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccc---ccee---------ecccc
Q 001178 329 ATWSLDDLPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK---PFKI---------WDMSN 395 (1131)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~---~~~~---------~~~~~ 395 (1131)
+..+.+..|..++.++. -...++|+.||+|++ +||.|..|..|++|.+...+....+ .+.- -++..
T Consensus 359 ~~l~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 359 VKLGRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLD 437 (707)
T ss_pred hhcCCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcc
Confidence 34456777888888876 567999999999998 7999999999999999854321110 0000 11111
Q ss_pred cccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc
Q 001178 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 396 ~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
.........+.||.++|..+.|+|+.++|++++.|++|++|.+.+..++. .+.||..+|+++.|+|-|- ++||+|
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas 512 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATAS 512 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecC
Confidence 22222334588999999999999999999999999999999999976553 6789999999999999998 899999
Q ss_pred CCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 476 DDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
.|++.++|. ....+++.+.+|.+.|.|+.|+|+. .++++||.|.+||+||+.++.....+.+|..+|.+++|+|+|+
T Consensus 513 ~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR 590 (707)
T ss_pred CCceeeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc
Confidence 999999999 8888999999999999999998755 7999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++++. ++.|.+||+.++.++..+.+|. +.+.++.|+.+|..|++|+.|.+|++||+..
T Consensus 591 ~LaSg~e----d~~I~iWDl~~~~~v~~l~~Ht-~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 591 YLASGDE----DGLIKIWDLANGSLVKQLKGHT-GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eEeeccc----CCcEEEEEcCCCcchhhhhccc-CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999987 9999999999999999999984 4999999999999999999999999999865
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=321.61 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=256.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 485 (1131)
|.+.+|..+.||+|++.||+|+.+|.++||+..+...+ .+|.||...|.++.|+|......++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 56789999999999999999999999999999887543 4799999999999999984223799999999999999 4
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+..++..+.+|...|..++|+|+ |++|.|++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 55889999999999999999764 589999999999999999999999999999999999999999999999997
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EG 644 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~ 644 (1131)
|..-+|||+++|+.+..+.+|.. .|..+.|+|+|-.+++|+.|++++|||++....+.++..|.. -|+.+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999766 899999999999999999999999999999999988887766 799999999 78
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcc
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~ 724 (1131)
.+|++++.|++++||...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999987655 233322
Q ss_pred ccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 725 ~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
.+|.+.|.++.+++++..+++++.|.++++|.
T Consensus 427 ---------------------------------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ---------------------------------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------------------------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34888999999999999999999999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=322.85 Aligned_cols=565 Identities=12% Similarity=0.174 Sum_probs=413.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.|+|++=+.+- +.+++ ...|.+|.- |+.+. +++.+|...|.-+. |=|.++.
T Consensus 75 lp~~I~alas~~~~---vy~A~-g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDY---VYVAS-GNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCce---EEEec-CcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceEE
Confidence 78899999876553 33332 346777753 33322 24667777777654 4578999
Q ss_pred EEeCCCeEEEEEecCC-Cccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 426 VAFTKHLIHLYTYQGS-NDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~-~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
++..++.+.||+..++ +......++. .-.+.|+++. +|..---.++.|+.+|.+++|+ .+++.++++.++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211111222 2222366654 4443222689999999999999 999999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+.-+|. -+.++.|..+|+|.+++++..+.+..+....+.|++++|..||+.+++.+. ..|.+.+||++..+++..
T Consensus 208 ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 208 IEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLINV 282 (910)
T ss_pred eccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeeee
Confidence 976554 468999999999999999999999999887789999999999998877664 268999999999988888
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEEEeccCCCCCcceEEEc-CCCCEEEEEECCCcEEEE
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~v~~s-p~~~~l~~~~~dg~i~iw 659 (1131)
....+.+.+....|.|....+++++.|+.+++|=.++ |.+.......+|..+..++.|. .+|..+.+++.|++++.+
T Consensus 283 ~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 283 TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 8766666888899999999999999999999885554 3222222223555588999998 689999999999999988
Q ss_pred ecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCC
Q 001178 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1131)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~ 739 (1131)
++.........-+.|...- .+..+ .+++ -....++...++..........+.+...-.+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~------~kk~~-----~~~~---------~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKR------AKKVN-----VFST---------EKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred hhhHHHHhHhhcccccccc------ccccc-----ccch---------hhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 8654311111111110000 00000 0000 01112223334444444455566666666677
Q ss_pred CCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 740 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
..+.|+..+........ .-.........+.+++.++.|...+.|.+.|.|.+|+++.+-.
T Consensus 423 ~~~tW~~~n~~~G~~~L--~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------------ 482 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVL--DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------------ 482 (910)
T ss_pred eEEEEeccCcccccEEe--cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee------------------
Confidence 88889887644321111 0000112457889999999999999999999999888755321
Q ss_pred CCcccccCC-CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 820 NGLLMTNDV-PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 820 ~~~~~~~~~-~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
....- ...|..+|+.++...-++.+++++ +|.+++||..+...+..+.. ...+.++.++. ...++|.+..|-
T Consensus 483 ----r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr-~s~l~a~~~ddf 556 (910)
T KOG1539|consen 483 ----RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHR-VSDLLAIALDDF 556 (910)
T ss_pred ----ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeee-hhhhhhhhcCce
Confidence 11100 125899999999999888898888 99999999999888887764 45688888888 788999999999
Q ss_pred cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.|+++|..+.+.+..+.||.+.|++++|||||++|++++.|++|++||+.++......... .+...+.|+|.|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-------~~~~sls~SPng 629 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-------SPCTSLSFSPNG 629 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-------CcceeeEECCCC
Confidence 9999999999999999999999999999999999999999999999999998865554433 788999999999
Q ss_pred cEEEEEe--CCeEEEEeCCC
Q 001178 978 VRLLVNH--ETQLAIYDGSK 995 (1131)
Q Consensus 978 ~~l~~~~--d~~i~vwd~~~ 995 (1131)
.+||+.+ ...|++|.-.+
T Consensus 630 D~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CEEEEEEecCceEEEEEchh
Confidence 9999976 36799997543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=315.72 Aligned_cols=474 Identities=16% Similarity=0.256 Sum_probs=354.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+++.|-|+.|+|...+ +.++-.+|.|.|||.++...++. +.-..-+|.+..|-+-.+++
T Consensus 11 ~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWi 70 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWI 70 (794)
T ss_pred ccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceE
Confidence 38899999999999986 56677899999999999887763 33345689999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
++|++|..|+||+..+++.+. .+.+|...|.+++.+|... +++|+|+|-+|++|| ..-.+.++|.||+.-|.+
T Consensus 71 v~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 71 VTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred EEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 999999999999999987554 7899999999999999998 899999999999999 445677899999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC--CEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
++|+|.+ .+.+++++-|++|++|.+....+..++.+|...|+++.|-+-| .+|++++. |..+++||.++..++
T Consensus 146 v~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 146 VAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCV 220 (794)
T ss_pred EEecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHH
Confidence 9999854 4799999999999999999999999999999999999998755 68999986 899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
+++.||.+ .|..++|+|.-..+++|++||+++||+..+-+...++..... .+.+++-.+.++.+++|.++|.+.+ .
T Consensus 221 ~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~Deg~i~v-~ 296 (794)
T KOG0276|consen 221 QTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFDEGSVTV-K 296 (794)
T ss_pred HHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEeccCCcEEE-E
Confidence 99999887 899999999999999999999999999999888777765544 7999999998899999998888765 2
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
+..+. +.++-+..|
T Consensus 297 lgree-----------------------------------------------------------------P~vsMd~~g- 310 (794)
T KOG0276|consen 297 LGREE-----------------------------------------------------------------PAVSMDSNG- 310 (794)
T ss_pred ccCCC-----------------------------------------------------------------CceeecCCc-
Confidence 21110 001111111
Q ss_pred CcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1131)
--+|...+ .|..+-. -+.+..+ ....
T Consensus 311 KIiwa~~~--------------------ei~~~~~-------ks~~~~~---------------------------ev~D 336 (794)
T KOG0276|consen 311 KIIWAVHS--------------------EIQAVNL-------KSVGAQK---------------------------EVTD 336 (794)
T ss_pred cEEEEcCc--------------------eeeeeec-------eeccCcc---------------------------cccC
Confidence 01222111 1111000 0000000 1112
Q ss_pred CcccccCCCC--CCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 821 GLLMTNDVPE--NAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 821 ~~~~~~~~~~--~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
|+.+...+.+ .-.-....++-||+|+++++++||.-.||..-..+. ...+.-....|++ +....|+-..++.
T Consensus 337 gErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~ 410 (794)
T KOG0276|consen 337 GERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGN 410 (794)
T ss_pred CccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCc
Confidence 2211111111 112223457889999999999999999987432211 2345567788999 7777788888899
Q ss_pred EEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 899 IQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
|+++ ++.+....++..-. +..+ -.|.+|... .++.+++||.++++...... .....+.|+.+|.
T Consensus 411 vki~--knfke~ksi~~~~~---~e~i-~gg~Llg~~-ss~~~~fydW~~~~lVrrI~---------v~~k~v~w~d~g~ 474 (794)
T KOG0276|consen 411 VKIF--KNFKEHKSIRPDMS---AEGI-FGGPLLGVR-SSDFLCFYDWESGELVRRIE---------VTSKHVYWSDNGE 474 (794)
T ss_pred eEEE--ecceeccccccccc---eeee-cCCceEEEE-eCCeEEEEEcccceEEEEEe---------eccceeEEecCCC
Confidence 9998 56665555542211 1111 134455554 45579999999987655443 3456789999999
Q ss_pred EEEEEeCCeEEEEeCC
Q 001178 979 RLLVNHETQLAIYDGS 994 (1131)
Q Consensus 979 ~l~~~~d~~i~vwd~~ 994 (1131)
+++.+.|...+++...
T Consensus 475 lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKFN 490 (794)
T ss_pred EEEEEecCceeEEEec
Confidence 9999988887776554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=307.19 Aligned_cols=464 Identities=17% Similarity=0.238 Sum_probs=352.2
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..++..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+--+ ++++|++|..|+|++
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 44588999999999999999999999999999999977665 5666778999999998877 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEcc-CCCEEEEEee
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSA-DGSRLFSCGT 561 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~ 561 (1131)
.+++.+..|..|.+-|.+++.||.. .+++++|+|-+|++||++..- +...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999876 699999999999999998764 4568999999999999999 6678999987
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
|++|++|.+.+..+..++.+|.. .|+++.+-+.| +++++|++|.+|+|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999877 89999998755 6999999999999999999999999998876 799999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|.-.++++|+.||+++||+..+- +....+.
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------------------------------------- 266 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------------------------------------- 266 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------------------------------------
Confidence 9999999999999999999987654 2111110
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
-...++.+++..+.+..++.|.+.|.+.+= +
T Consensus 267 ---------------------------------------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-l--- 297 (794)
T KOG0276|consen 267 ---------------------------------------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK-L--- 297 (794)
T ss_pred ---------------------------------------------cCCceEEEEeecCCCCeEEEeccCCcEEEE-c---
Confidence 023456666666777777888777776541 1
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC--CeEEEE------ECCCceeEEE--
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG--GKVSLF------NMMNFKVMTT-- 869 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~~-- 869 (1131)
+... ..+.+++.|+.+-+... -.+.+- ++.+|+.+..
T Consensus 298 -------------------------------gree--P~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 298 -------------------------------GREE--PAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred -------------------------------cCCC--CceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 1122 23455566655544332 112222 2333333211
Q ss_pred --EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 870 --FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 870 --~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
+-.-.-....++-+| +|++++++ .||.-.||..-..+ ..+.+.-....|++|.+..++--.++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 111112245678899 88887755 57888888743222 1244566778899998888888888889988 4
Q ss_pred CCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE
Q 001178 948 TWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
..+........ ..+.+--.|.+|.+.+++.+++||..++..++.+... ...+.|+.+|.+++.+
T Consensus 416 nfke~ksi~~~----------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~ 479 (794)
T KOG0276|consen 416 NFKEHKSIRPD----------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIA 479 (794)
T ss_pred cceeccccccc----------cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEE
Confidence 43332222111 1122233466777788999999999999999988654 4577999999999988
Q ss_pred ecCCcEEEEEC
Q 001178 1028 FTDGSIGVFDA 1038 (1131)
Q Consensus 1028 ~~dg~i~vwd~ 1038 (1131)
+.| +.+++.+
T Consensus 480 ~d~-Sfyil~~ 489 (794)
T KOG0276|consen 480 GDD-SFYILKF 489 (794)
T ss_pred ecC-ceeEEEe
Confidence 844 4455543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=287.52 Aligned_cols=286 Identities=17% Similarity=0.239 Sum_probs=256.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .++-....|..++|+|.|+ +++.|+-|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 688999999999999999999999999999999998866443 4555678999999999999 89999999999999
Q ss_pred eCC-C------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCE
Q 001178 484 DLS-G------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1131)
Q Consensus 484 d~~-~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 555 (1131)
+++ . +..+.+.+|++.+.+..|.. | ..|+++|.|.+..+||+++++....+.+|...|.++.++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 933 2 23467889999999999854 3 5799999999999999999999999999999999999999 9999
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
+++++. |...++||++.+..+++|.+|.. .|++++|.|+|.-+++|++|++.++||++..+.+..+....-...|
T Consensus 202 FvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 999998 89999999999999999999876 8999999999999999999999999999999999998877777789
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
++++||..|++|+.|..|.++.+||.-.+.+ ...
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-vg~--------------------------------------------- 310 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-VGV--------------------------------------------- 310 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccce-EEE---------------------------------------------
Confidence 9999999999999999999999999755410 000
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
+ .+|.++|.++..+|||..+++++.|..++||.
T Consensus 311 --------------------------------------------L---~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 311 --------------------------------------------L---AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------------------------------------e---eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 0 23999999999999999999999999999983
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=309.51 Aligned_cols=555 Identities=17% Similarity=0.240 Sum_probs=384.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
.+..|-.++|+|...+ +.++-..|.|++||..-+.++.. +..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 5678999999999985 77888999999999999888763 779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+|++|..|+||+.++.+|+. ++.||-..|..+.|++.-. +++|+|+|.+|+||+ .+++++..++||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987664 7899999999999999888 899999999999999 99999999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCc-----------------------------eeEEecCCCceEEEEEEccCCCE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVG-----------------------------SRVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
|+|.. ..++++|-|.+||+||+.... ....+.+|...|+-++|.|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99877 489999999999999975311 11246778889999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+++|+. |..|++|.+..-+ .+-+..+|.+ .|.++-|+|..+.+++.++|++|+|||+.....++++.....
T Consensus 221 iVSG~D----DRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-- 293 (1202)
T KOG0292|consen 221 IVSGAD----DRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-- 293 (1202)
T ss_pred EEecCC----cceeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--
Confidence 999986 8899999876544 3456778777 899999999999999999999999999999999988865544
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1131)
....++.+|..++++.| .|+-+.+|.++.. +... ++
T Consensus 294 RFW~laahP~lNLfAAg-HDsGm~VFkleRE-rpa~-------------------------~v----------------- 329 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAG-HDSGMIVFKLERE-RPAY-------------------------AV----------------- 329 (1202)
T ss_pred eEEEEEecCCcceeeee-cCCceEEEEEccc-CceE-------------------------EE-----------------
Confidence 78999999999987766 5555567766532 1100 00
Q ss_pred ccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee--ccee
Q 001178 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS--NGVQ 791 (1131)
Q Consensus 714 ~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~i 791 (1131)
.++.++..- +..++.+++....... ...+........+..++.|+|....++.+++ +|..
T Consensus 330 --------------~~n~LfYvk-d~~i~~~d~~t~~d~~---v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y 391 (1202)
T KOG0292|consen 330 --------------NGNGLFYVK-DRFIRSYDLRTQKDTA---VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEY 391 (1202)
T ss_pred --------------cCCEEEEEc-cceEEeeeccccccce---eEeccCCCcccCCcceeeeccccCeEEEEeccCCCeE
Confidence 112222222 5677777776633221 2222222224567889999998776666643 4555
Q ss_pred eEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe
Q 001178 792 KLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM 871 (1131)
Q Consensus 792 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~ 871 (1131)
.++.+......... + .... .......+-...++-.+..-++..+.+-++.+ +..+.+.
T Consensus 392 ~L~~ipk~~~~~~~---------------~----~~~~--k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~ 449 (1202)
T KOG0292|consen 392 ELVQIPKDSDGVSD---------------G----KDVK--KGTGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLL 449 (1202)
T ss_pred EEEEecCcccccCC---------------c----hhhh--cCCCCceEEEEecceEEEEecCcceEEecccc-hhhhccc
Confidence 55554332110000 0 0000 11112222222222111111234455555443 2222222
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001178 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 872 ~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
.. ..+..+-+.- .|.+|.. ....|.+||++..+.+..++ ...|.-+.||+|..+++--+.. +|.|.+.+-.-
T Consensus 450 ~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~kkL~l- 521 (1202)
T KOG0292|consen 450 LP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIADKKLEL- 521 (1202)
T ss_pred Cc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEecchhh-
Confidence 21 2334444444 5665543 34579999999888777775 4578899999999888776654 68888755310
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
. ...+....|.+-+|..+|.++.+..+.--+-..-.....++++ ..+|+-.+. .|+.+++-..|+
T Consensus 522 ----~---~sihEtiriksgawde~gVfiYtT~nHikYal~~GD~GIikTL------d~~iyitkv--~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 522 ----L---CSIHETIRIKSGAWDEDGVFIYTTLNHIKYALENGDSGIIKTL------DKPIYITKV--KGNKVFCLNRDG 586 (1202)
T ss_pred ----e---ecchheeEeeeceeccCceEEEEehhhhhhhhccCCcceEEec------ccceEEEEe--eCCEEEEEecCC
Confidence 0 1112225677889999998888754321111111112223333 234444444 477888888999
Q ss_pred cEEEEECCCC
Q 001178 1032 SIGVFDADSL 1041 (1131)
Q Consensus 1032 ~i~vwd~~~~ 1041 (1131)
.+.+.+++.-
T Consensus 587 ~~~~~~IDpt 596 (1202)
T KOG0292|consen 587 EIECLTIDPT 596 (1202)
T ss_pred CeEEEeechH
Confidence 9999888754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=285.72 Aligned_cols=526 Identities=17% Similarity=0.241 Sum_probs=382.4
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
..+-+-|.|..+..++ +.+.+++++...+. .+.+|+..|.|++.+||.-.+|+|-..
T Consensus 69 ~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr--------------------~y~GH~ddikc~~vHPdri~vatGQ~a 125 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA---AVGVLYNWEERSQR--------------------HYLGHNDDIKCMAVHPDRIRVATGQGA 125 (626)
T ss_pred ceeEEccCccEEEEec---cEEEEEeehhhhcc--------------------cccCCCCceEEEeecCCceeeccCccc
Confidence 3455667675333332 35677777543222 367999999999999999999987444
Q ss_pred C--------eEEEEEecCCCccceeeeeecCcCCeeEEEEecCC--CceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 431 H--------LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN--KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 431 ~--------~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~--~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
| .+++||..+-. ..+.+..-...|.|++|++-. ..+..+--+.+..+.+|| ..+......+..+..
T Consensus 126 g~~g~~~~phvriWdsv~L~---TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~ 202 (626)
T KOG2106|consen 126 GTSGRPLQPHVRIWDSVTLS---TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEV 202 (626)
T ss_pred ccCCCcCCCeeeecccccce---eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccce
Confidence 4 59999976643 334555667789999999843 322333356677899999 777777777777788
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE---ecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---YDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|....|+|... +++++ ...+.+.+|+++.+..... +.. ....|.+++|.++|..+ ++- .+|.|.||+..
T Consensus 203 v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgD----S~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGD----SGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eec----CCceEEEEeCC
Confidence 89999998764 44444 4568999999887654432 222 22579999999999865 443 38999999998
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
+.+..+....| ++.|.+++.-.+|. |++|+.|+.|..|| ..-+.++..+.+...+.|..++-...+ +++|...+.
T Consensus 276 ~~~~~k~~~aH-~ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~ 350 (626)
T KOG2106|consen 276 TNRISKQVHAH-DGGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNF 350 (626)
T ss_pred CceEEeEeeec-CCceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccce
Confidence 88888777754 45899999998876 55599999999999 445555555555555577777644323 777776666
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
|..=.++++. ++.
T Consensus 351 iL~Gt~~~~f-------------------------------~~~------------------------------------ 363 (626)
T KOG2106|consen 351 ILQGTLENGF-------------------------------TLT------------------------------------ 363 (626)
T ss_pred EEEeeecCCc-------------------------------eEE------------------------------------
Confidence 6544443331 000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. .+|......++..|+...+++++.|+.+++|+-.. .+
T Consensus 364 ------------------------v---~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 364 ------------------------V---QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ------------------------E---EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 0 22666778899999999999999999999997111 23
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
|.. ....++.|+.|.|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+
T Consensus 402 wt~------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs 466 (626)
T KOG2106|consen 402 WTK------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGS 466 (626)
T ss_pred EEE------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEec
Confidence 332 247788999999999 888888 89999999999665554444 88999999999 999999999
Q ss_pred CCCcEEEEEeecceeE-Ee-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee------------eeeecC
Q 001178 895 EDSTIQIYNVRVDEVK-TK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS------------IAIQLP 960 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~~-~~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~------------~~~~~~ 960 (1131)
.|+.|+||.+...... .. -+-|..+|+.+.||+|+++|.+.+.|-.|..|.....+.... .-+...
T Consensus 467 ~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~ 546 (626)
T KOG2106|consen 467 HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVF 546 (626)
T ss_pred CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEe
Confidence 9999999999754322 22 223348999999999999999999999999994433221111 111222
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 961 AGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.+.+...+..++-+...++++++. .|.|++|...-.+....+....+|++.|++++|+.+...|.+.+.|.+|..|++
T Consensus 547 g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 547 GGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 233445566667777888888886 589999998766655555555566999999999999999999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=272.96 Aligned_cols=284 Identities=17% Similarity=0.273 Sum_probs=239.0
Q ss_pred cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 361 ~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
-+|++++.|.+|++|...+|.+.+ ++....+.|+.+...||++.||+++. ..|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r-------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR-------------------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE-------------------EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence 489999999999999999999987 34456788999999999999999876 4799999999
Q ss_pred CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecC
Q 001178 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 520 (1131)
++.. +..++.+|++.|+++.|..||+ +++|||+||+++|||...........|..+|+++..+|.. ..|++|..+
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ--teLis~dqs 145 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ--TELISGDQS 145 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc--ceEEeecCC
Confidence 8754 5668999999999999999999 8999999999999994444445555688999999998755 689999999
Q ss_pred CeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC------eeeEEEecccCCceEE
Q 001178 521 GKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG------ALKRTYIGFRKKSAGV 593 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~v~~ 593 (1131)
|.|++||+.+......+.. ....|.++.+.|||.+++.+.. .|+.++|++-++ +++.+++.|.. -+..
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il~ 220 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HILR 220 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEEE
Confidence 9999999988766554433 3458999999999999999875 899999998654 34566777665 6777
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhc
Q 001178 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIET 673 (1131)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 673 (1131)
+.+||++++|++++.|.+++||+.++. ....+...++...+..++||.||.+|++++.|+.+++|++..+ +.++...+
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy~g 298 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQYQG 298 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeecCC
Confidence 889999999999999999999999988 3334444455568999999999999999999999999999988 55555555
Q ss_pred ccc
Q 001178 674 RAY 676 (1131)
Q Consensus 674 ~~~ 676 (1131)
|..
T Consensus 299 h~K 301 (311)
T KOG0315|consen 299 HHK 301 (311)
T ss_pred ccc
Confidence 543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=290.72 Aligned_cols=289 Identities=21% Similarity=0.343 Sum_probs=264.5
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..+..+|..+|+.+-|+|+-. ++++++.|++|++||..+|+... .++||...|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 344556999999999999986 79999999999999999999865 4889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
.|++||+++.|-.+++||.++. ..+...+.+|...|.+++|-|.|. +++|++.|.+|+.|+ .+|-++.++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999763 344456889999999999999998 899999999999999 99999999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC---------------CCEEEEEeecC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD---------------GSRLFSCGTSK 563 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~---------------g~~l~~~~~~~ 563 (1131)
.|..+.. ..||.++++++.|.++++|-+.++.+...+..|..+|.+++|.|. +.++.+++.
T Consensus 237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr-- 312 (406)
T KOG0295|consen 237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR-- 312 (406)
T ss_pred hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc--
Confidence 9999987 578899999999999999999999999999999999999999774 246777765
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|++|++||+.+|.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..|.+ -++++.|+.+
T Consensus 313 --DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~ 387 (406)
T KOG0295|consen 313 --DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKT 387 (406)
T ss_pred --cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCC
Confidence 99999999999999999999877 899999999999999999999999999999999999998877 6899999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
..++++|+-|.++++|..
T Consensus 388 ~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 388 APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CceEEeccccceeeeeec
Confidence 999999999999999974
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=279.75 Aligned_cols=524 Identities=16% Similarity=0.199 Sum_probs=375.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--------cEEEEe-
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--------LIRVWD- 484 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--------~i~iwd- 484 (1131)
.+-+-|.|..+.... +.+.+|+.+...+. -+.+|+..|.|++.+||.- .+++|-.-+ .++|||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 456777777654432 35667777653211 3679999999999999976 567654333 599999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEE--ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~ 561 (1131)
.+-..+..+......|++++|++...|..+..- +.+..+.+||+..+............|....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 888888888878889999999998888777665 4566789999998887777777778899999999654 555665
Q ss_pred cCCCCceEEEEeCCCCeeeE---EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 562 SKEGDSHLVEWNESEGALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
.+.++.|+.+.+.+.+ .|..+....|.|++|.++|. +++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 8899999999886654 35555556799999999876 789999999999999887776666644 4489999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
+.-.+|.+|- |+.|..|..||- ..+..+..+.
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~--~y~k~r~~el--------------------------------------------- 325 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDD--NYRKLRETEL--------------------------------------------- 325 (626)
T ss_pred EEecCccEee-cCccceEEeccc--cccccccccC---------------------------------------------
Confidence 9999987655 999999999992 2122111111
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
|+ ..+.|..++-...+ ++++...+.|..=.+
T Consensus 326 ------------------------------------------Pe---~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~-- 356 (626)
T KOG2106|consen 326 ------------------------------------------PE---QFGPIRTVAEGKGD--ILVGTTRNFILQGTL-- 356 (626)
T ss_pred ------------------------------------------ch---hcCCeeEEecCCCc--EEEeeccceEEEeee--
Confidence 11 12222222221111 444444333321111
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCe
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS 877 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 877 (1131)
+++..+. ..+|......++..|+...+++++ |+.+++|+ ..+++.+.. -..++
T Consensus 357 --------------------~~~f~~~---v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~ 410 (626)
T KOG2106|consen 357 --------------------ENGFTLT---VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPA 410 (626)
T ss_pred --------------------cCCceEE---EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCce
Confidence 1111000 015888999999999999999888 99999999 445544433 35678
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.|+.|+| .| .+|.|+..|...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.++..........
T Consensus 411 ~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 411 ECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eEeeccC-cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9999999 77 999999999999999999766655454 88999999999999999999999999999988654443332
Q ss_pred ecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCccccee--------------eec-CCCCCCCeEEEEEccCC
Q 001178 958 QLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ--------------WVP-QDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 958 ~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~--------------~~~-~~~~~~~v~~i~~s~dg 1021 (1131)
. .+..+++.+.||+|++++.+. .|..|..|....-+.+.. +.. ...++..|..++-+.+.
T Consensus 488 k----~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~ 563 (626)
T KOG2106|consen 488 K----CSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE 563 (626)
T ss_pred e----ecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh
Confidence 2 222789999999999999985 488899994432222111 111 12346678888888999
Q ss_pred CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1022 QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1022 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
+++|+|.+.|.|++|.+.--+..+.. +.. ..|++.+. +|+|.-.+ ..|.+.+.|.+|+.|++
T Consensus 564 ~~lA~gdd~g~v~lf~yPc~s~rA~~---he~----~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 564 KLLASGDDFGKVHLFSYPCSSPRAPS---HEY----GGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhccccCceEEEEccccCCCcccc---eee----ccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 99999999999999998755443221 111 22444444 68887755 56666669999999987
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=291.93 Aligned_cols=335 Identities=16% Similarity=0.293 Sum_probs=279.3
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecC--CCc-----cceeeeeec----CcCCeeEEEEecCCCceEEEEE
Q 001178 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQG--SND-----LCQSLEIDA----HVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~--~~~-----~~~~~~~~~----h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.|..+|.+++|+|-.. .||+|+.|-+.++|++.. ..+ ++......+ .+..|++++|+.+|. .||+|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATG 253 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEe
Confidence 3999999999999666 999999999999999974 111 111111112 235799999999999 89999
Q ss_pred cCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 475 GDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 475 s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
+.||.++||+..|..+.++..|.++|.++.|+ ..|.+|++++.||++.+||.-++.....+..+..+-..+.|-.+..
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWn--k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWN--KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEc--CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 99999999999999999999999999999995 5668999999999999999999999988888887766677765554
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+++++. ++.|+++.+....++.++.+|++ .|.++.|.|.+..|+++++|++++||++........+..|.. .
T Consensus 332 -F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--e 403 (524)
T KOG0273|consen 332 -FATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK--E 403 (524)
T ss_pred -EeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc--c
Confidence 556554 99999999999999999999777 999999999999999999999999999877666666555443 5
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCc
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1131)
|..+.|+|.|.. .|+.
T Consensus 404 i~t~~wsp~g~v-----------~~n~----------------------------------------------------- 419 (524)
T KOG0273|consen 404 IYTIKWSPTGPV-----------TSNP----------------------------------------------------- 419 (524)
T ss_pred eeeEeecCCCCc-----------cCCC-----------------------------------------------------
Confidence 666666665421 0000
Q ss_pred cccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEE
Q 001178 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1131)
Q Consensus 715 ~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1131)
T Consensus 420 -------------------------------------------------------------------------------- 419 (524)
T KOG0273|consen 420 -------------------------------------------------------------------------------- 419 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC
Q 001178 795 KWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP 873 (1131)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~ 873 (1131)
-++..+++++ |++|++||+..+.++.+|..|
T Consensus 420 ------------------------------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 420 ------------------------------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ------------------------------------------------cCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 0223345555 899999999999999999999
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
..+|.+++|+| +++++|+|+.||.|.+|+.++++..+...+. +.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus 452 ~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 452 QEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999 9999999999999999999999999888855 559999999999999999999999998874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=270.35 Aligned_cols=249 Identities=21% Similarity=0.285 Sum_probs=214.6
Q ss_pred eeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCc--cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 403 AIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.++++|.+.|+.++..+. ...|.+++.|.++.+|++..... -...+.+.||...|..++.++||+ +.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccce
Confidence 378999999999999996 56889999999999999976432 123446899999999999999999 8999999999
Q ss_pred EEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-CceEEEEEEccC--CCE
Q 001178 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSAD--GSR 555 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~--g~~ 555 (1131)
+++|| .+|+..+.|.+|...|.+++|++ |...+++|+.|++|++|+.-........... ..+|.++.|+|+ ..+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999 88899999999999999999965 4589999999999999998754444333333 779999999998 677
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
+++++. |+.+++||+++.+....+.+|.. .++.++++|||...++|+.||.+.+||++.++.+..+.. ...|
T Consensus 165 Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v 236 (315)
T KOG0279|consen 165 IVSASW----DKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIV 236 (315)
T ss_pred EEEccC----CceEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeE
Confidence 888887 99999999999999999999766 899999999999999999999999999999999887754 3479
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+++|+|+...|+.+. +..|+|||+.++
T Consensus 237 ~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEEecCCceeEeecc-CCceEEEeccch
Confidence 9999999876665554 556999999877
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=264.62 Aligned_cols=295 Identities=15% Similarity=0.241 Sum_probs=251.3
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCC
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKK 589 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 589 (1131)
-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++ ...|++||++++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5889999999999999999999999999999999999999999999997 6789999998765 5889999876
Q ss_pred ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhh
Q 001178 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1131)
Q Consensus 590 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1131)
.|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|++|..+|.|++||+.+.. ...
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-CTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCc-ccc
Confidence 7999999999999999999999999999986655555433 489999999999999999999999999987651 111
Q ss_pred hhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecc
Q 001178 670 AIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEI 749 (1131)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~ 749 (1131)
. .
T Consensus 161 ~-------------------------l----------------------------------------------------- 162 (311)
T KOG0315|consen 161 E-------------------------L----------------------------------------------------- 162 (311)
T ss_pred c-------------------------c-----------------------------------------------------
Confidence 0 0
Q ss_pred cCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCC
Q 001178 750 VDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVP 829 (1131)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 829 (1131)
+ ++....|.++.+.|||+.++++.+.|...+|++........ +.-..-.
T Consensus 163 ----------i---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~------------------l~P~~k~ 211 (311)
T KOG0315|consen 163 ----------I---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE------------------LEPVHKF 211 (311)
T ss_pred ----------C---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc------------------ceEhhhe
Confidence 1 11456788999999999999999999999999865221110 0000011
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc-eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 830 ENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
..|...+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+...+||. |+++|++|+.|+.+++|++..+
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 25889999999999999999998 899999999998 66667889999999999999 9999999999999999999999
Q ss_pred eeEEeecccccCeeEEEEc
Q 001178 908 EVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s 926 (1131)
+.+....+|..+..|++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999999988888764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=275.61 Aligned_cols=338 Identities=17% Similarity=0.257 Sum_probs=284.8
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.|..|++.|.+++.+|+.+ +++|||.|....+|+ .+|..+..+.+|...|+++.|+ .+|.+|+||..+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence 6889999999999999777 899999999999999 8889999999999999999995 5678999999999999999
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
..++.....+......+.-+.|+|.+..|+.++. ||.+++|.+.++...+.+.+|.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999988777778999999999999999986 99999999999888899999655 899999999999999999
Q ss_pred cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
.||+|++||..++.++..+....+ ....++.++..+..++.|+.++.+.+-+..+++ .+...
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~---------------- 271 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCN---------------- 271 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEec----------------
Confidence 999999999999999988875543 257889999999999999999998887655441 00000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
.
T Consensus 272 ---------n---------------------------------------------------------------------- 272 (399)
T KOG0296|consen 272 ---------N---------------------------------------------------------------------- 272 (399)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 0
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
+.+..+-. -.......|.++.++..-.+
T Consensus 273 ---------~~~~~l~~-------------------------------------------~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 273 ---------GTVPELKP-------------------------------------------SQEELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCCccccc-------------------------------------------cchhhhhhhhhcccccccch
Confidence 00000000 00012334455566667778
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 88998 9999999999876665554 677799999986 4688899999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcC
Q 001178 927 TNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 927 ~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
|+.++++|+|.|++.++++..
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=293.76 Aligned_cols=556 Identities=16% Similarity=0.249 Sum_probs=376.1
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+...+..|..++|+|..-+++++-..|.|++||.+-+.++. .+..|.++|..++|+|++. +++|||+|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 34557789999999999999999999999999999887665 6889999999999999999 999999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+.+++.++.||-+.|..+.||..- .+|+++|+|.+|+||++.+.+++..+.+|.+.|.|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 8899999999999999999998644 79999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEEeCCCCe-----------------------------eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 564 EGDSHLVEWNESEGA-----------------------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
|.+|++||+..-+ ....+.||.. .|+.++|+|.-..+++|++|+.|++
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 8999999985211 1123456544 8999999999999999999999999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.+...... .-+.
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendR-------------FW~l 298 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDR-------------FWIL 298 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCe-------------EEEE
Confidence 99987665544445566669999999999999999999999999999776 333333221111 1111
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
+..|. --++.++.|+-+.+|.+... .+ +.+
T Consensus 299 aahP~------------------------------lNLfAAgHDsGm~VFkleRE------------------rp--a~~ 328 (1202)
T KOG0292|consen 299 AAHPE------------------------------LNLFAAGHDSGMIVFKLERE------------------RP--AYA 328 (1202)
T ss_pred EecCC------------------------------cceeeeecCCceEEEEEccc------------------Cc--eEE
Confidence 22222 12344455555666665421 11 112
Q ss_pred eecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--
Q 001178 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-- 852 (1131)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-- 852 (1131)
. ++..|...- +..|+.+|+.+....+ ......++..-.++.++.++|....+..++
T Consensus 329 v--~~n~LfYvk-d~~i~~~d~~t~~d~~-------------------v~~lr~~g~~~~~~~smsYNpae~~vlics~~ 386 (1202)
T KOG0292|consen 329 V--NGNGLFYVK-DRFIRSYDLRTQKDTA-------------------VASLRRPGTLWQPPRSLSYNPAENAVLICSNL 386 (1202)
T ss_pred E--cCCEEEEEc-cceEEeeeccccccce-------------------eEeccCCCcccCCcceeeeccccCeEEEEecc
Confidence 2 233333333 6666666665421110 000011112346788999999877666664
Q ss_pred -CCeEEEEECCCceeEEEE-e--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 853 -GGKVSLFNMMNFKVMTTF-M--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
.++-.++.+.....-..- . .......++-... +++.+.--.+..+.+=++.+.. ...+.-. ..+..+-+.-+
T Consensus 387 ~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrfavl~k~~~~v~ik~l~N~v-tkkl~~~-~~~~~IF~ag~ 462 (1202)
T KOG0292|consen 387 DNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRFAVLDKSNEQVVIKNLKNKV-TKKLLLP-ESTDDIFYAGT 462 (1202)
T ss_pred CCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cceEEEEecCcceEEecccchh-hhcccCc-ccccceeeccC
Confidence 355556655432111000 0 0011122222222 2222222224445554444322 2222211 23445556666
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC
Q 001178 929 LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008 (1131)
Q Consensus 929 g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 1008 (1131)
|.+|+.. ...|.++|++..+....... ..+.-+.||+|..+++.-+...|.|++.+ .+.+..+..
T Consensus 463 g~lll~~--~~~v~lfdvQq~~~~~si~~--------s~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sihE---- 527 (1202)
T KOG0292|consen 463 GNLLLRS--PDSVTLFDVQQKKKVGSIKV--------SKVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIHE---- 527 (1202)
T ss_pred ccEEEEc--CCeEEEEEeecceEEEEEec--------CceeEEEEcCccchhhhcccceEEEEecc-hhheecchh----
Confidence 6666543 34699999998665444333 67889999999999998888889998865 333333221
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc--eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR--LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.-.|.+-+|..+|-+|.+... .|+ |-+.+|. .+.++. .+++.+.+ .++.+..-..|+
T Consensus 528 tiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTLd-------------~~iyitkv-----~gn~V~cl~rd~ 586 (1202)
T KOG0292|consen 528 TIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTLD-------------KPIYITKV-----KGNKVFCLNRDG 586 (1202)
T ss_pred eeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEecc-------------cceEEEEe-----eCCEEEEEecCC
Confidence 457888899988888888763 222 3333332 222222 23444444 467888888899
Q ss_pred cEEEEecCCCcc
Q 001178 1087 SVKVIEPSETER 1098 (1131)
Q Consensus 1087 ~v~iW~~~~~~~ 1098 (1131)
.+....+.-.|-
T Consensus 587 ~~~~~~IDptEy 598 (1202)
T KOG0292|consen 587 EIECLTIDPTEY 598 (1202)
T ss_pred CeEEEeechHHH
Confidence 998888765553
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=293.00 Aligned_cols=282 Identities=20% Similarity=0.295 Sum_probs=248.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-+..|..|.|.|+|++ |++|+..|.+.+|+..+-... .++..|..+|.++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fnFE-------------------tilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFNFE-------------------TILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceeeHH-------------------HHhhhhcccceeEEEccCCCEEE
Confidence 4568999999999997 889999999999997432111 15779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
+|+.+|.|++|+..-.. ++ .+.+|. ..|++++|+|.+. .+++|++|++|+||| ...+.-..+.+|...|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999986543 22 345554 8999999999888 799999999999999 7777778889999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+|+|.. ..|+++|.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++.+
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence 999876 58999999999999999999999999999999999999999999999987 889999999998999999
Q ss_pred ecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99887 89999999965 577789999999999998666655543 345568999999999999999999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=272.35 Aligned_cols=329 Identities=16% Similarity=0.194 Sum_probs=279.7
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|+++|.+++.+|+.+++|+|+.|....+|++.+|... ..+.+|...|+++.|+.||. +|+||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---~eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---GELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce---eEecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 57799999999999999999999999999999999999844 47899999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
. .++.....+...-..+.-+.|||. +.+|++|+.||.+-+|.+.+......+.+|..++++=.|.|+|++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 888888888766677888999874 479999999999999999998888889999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc---------CCCC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------GGLP 633 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~ 633 (1131)
+++|++|+..+++++..+.+.......++.++..+..++.|+.++.+++-+..+|+.+...... ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 9999999999999999988777777888999999999999999999999999999887776521 1111
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPAR 713 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 713 (1131)
.|.++.++..-++.|+|+-||+|.|||+.... ++.
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~------------------------------------------- 322 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRH------------------------------------------- 322 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hhe-------------------------------------------
Confidence 23344444455667777777777777764320 000
Q ss_pred ccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeE
Q 001178 714 PSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL 793 (1131)
Q Consensus 714 ~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i 793 (1131)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeC
Q 001178 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS 872 (1131)
Q Consensus 794 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 872 (1131)
.. .|...|..+.|-+ ..+|++++ +|+|+.||..+|+++.++.+
T Consensus 323 ---------------------------------~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 323 ---------------------------------IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ---------------------------------ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEec
Confidence 00 3677788888888 55666666 99999999999999999999
Q ss_pred CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 873 PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 873 ~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
|...|.+++++| +.+++++++.|++.+||+..
T Consensus 367 H~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 999999999999 89999999999999999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=277.74 Aligned_cols=292 Identities=18% Similarity=0.292 Sum_probs=258.0
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
-.+.+.+ +|.+.|.|+++.|-+. .+++|+.|++|.|||+.+|+... ++.||-..|..++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~va 200 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVA 200 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeee
Confidence 3445555 4999999999999987 59999999999999999998765 5889999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 495 (1131)
+|+--.||.+++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.++|||| .+...+..+.|
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecC
Confidence 99999999999999999999999987666 6789999999999999888 899999999999999 78888999999
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|..+|.++.+.+.+ ..+++||.|++|++||+..++....+..|...+.+++.+|....+++++ ...|.-|++.
T Consensus 276 H~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccCC
Confidence 99999999986544 5799999999999999999999999999999999999999999999987 4579999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec---c---CCCCCcceEEEcCCCCEEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA---E---GGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~~~i~~v~~sp~~~~l~~ 649 (1131)
.|..+..+.+|.. .+++++...|+ ++++|+++|.+.+||.++|...+.... . .....|.+.+|...|..|++
T Consensus 349 ~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit 426 (460)
T KOG0285|consen 349 EGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLIT 426 (460)
T ss_pred ccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEe
Confidence 9999999888766 89999888664 889999999999999999865554421 1 12235889999999999999
Q ss_pred EECCCcEEEEecCC
Q 001178 650 TTADQGIKILANAD 663 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~ 663 (1131)
|..|.+|++|.-..
T Consensus 427 ~eadKtIk~~keDe 440 (460)
T KOG0285|consen 427 GEADKTIKMYKEDE 440 (460)
T ss_pred ccCCcceEEEeccc
Confidence 99999999997543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=261.71 Aligned_cols=285 Identities=20% Similarity=0.326 Sum_probs=234.8
Q ss_pred cCCCcEEEEEEecC-CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSVVSMDFHPF-HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspd-g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+|++.|+.++|+|- |. +||+|+.|..|+||+...+....- ...+-.+|+..|.++||+|.|++
T Consensus 12 gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g~~ 75 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHGRY 75 (312)
T ss_pred CCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCCcE
Confidence 49999999999998 76 899999999999999985332110 11234589999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC---CceeEEecCCccC
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---GRKLFQFEGHEAP 499 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---~~~~~~~~~h~~~ 499 (1131)
||+|+.|.++.||.-..++ +....++.||...|.+++|+++|. +||+|+.|+.|-||. .. -.++..+.+|...
T Consensus 76 La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 9999999999999987654 556678999999999999999999 899999999999999 32 2467789999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCC---CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
|..+.|+|+. .+|+++|.|++|++|+-.. -.....+.+|...|.+++|++.|..|++++. ++++.||-..+
T Consensus 153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~~ 226 (312)
T KOG0645|consen 153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLYT 226 (312)
T ss_pred ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeecc
Confidence 9999999887 5999999999999997663 2346688888889999999999999999986 99999998552
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe------EEEEEeccCCCCCcceEEEcCC-CCEEEE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN------MLTSTEAEGGLPSLPRLRFNKE-GNLLVV 649 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~i~~v~~sp~-~~~l~~ 649 (1131)
.+...+...+..+.|. ...|++++.|+.|++|.-...- .+.. ..+.|...|+++.|+|. .++|++
T Consensus 227 -----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRLAS 298 (312)
T ss_pred -----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCceee
Confidence 3344455578889997 5689999999999999765421 1111 12234448999999994 788999
Q ss_pred EECCCcEEEEecC
Q 001178 650 TTADQGIKILANA 662 (1131)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1131)
++.||.+++|.+.
T Consensus 299 ~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 299 GGDDGIVNFWELE 311 (312)
T ss_pred cCCCceEEEEEec
Confidence 9999999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=268.85 Aligned_cols=285 Identities=19% Similarity=0.253 Sum_probs=245.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|+++|+.+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|++.|..+.|.+|+.
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 346999999999999998 69999999999999976433221 15779999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
.|++++.|++|+.||+++|++.+ .+.+|..-|++++-+.-|.. ++.|++.|+++++|| .+...++++. ....++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999998765 57899999999996666666 789999999999999 5566666654 456789
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----C
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----G 577 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~----~ 577 (1131)
++.|. ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +.++++||.+. .
T Consensus 179 Av~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCC
Confidence 99885 45578999999999999999999999999999999999999999999999887 99999999874 3
Q ss_pred eeeEEEecccCC---ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 578 ALKRTYIGFRKK---SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 578 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+++..+.++... ....++|+|++..+-+|+.|..+++||......+..+++|.. .|+++.|+|...++.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCc
Confidence 457777765321 234578999999999999999999999999888888876655 899999999999999999999
Q ss_pred cEEEE
Q 001178 655 GIKIL 659 (1131)
Q Consensus 655 ~i~iw 659 (1131)
+|.+=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-29 Score=271.40 Aligned_cols=550 Identities=14% Similarity=0.146 Sum_probs=385.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-C
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L 485 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~ 485 (1131)
-...|.+||||.+.+.||.+-.||.|.+|++..+=... ..+.++. ..|.+++|++.++ |+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 35689999999999999999999999999999864333 3566654 5899999996665 89999999999999 9
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
+++.+..+....+.|++++.+|.. ..++.|+.||.+..++...+.... .+....+.+.++.|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998765 689999999977777776655444 33445578999999999999999987
Q ss_pred CCCceEEEEeCCCCeeeEEEe-------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 564 EGDSHLVEWNESEGALKRTYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
||.|++||...+..+.... ......|.++.|-.+ ..+++|...|+|.+||...+.+++....+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766221 112224677777754 5799999999999999999999988887765 799
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccc
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1131)
+++..+++.++++++.|+.+..|...+....
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------------------------------------------- 280 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------------------------------------------- 280 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccc-------------------------------------------------
Confidence 9999999999999999999988876554210
Q ss_pred cccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEee
Q 001178 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 717 ~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1131)
|-... ....|...+.++++.++ .+++++.|.++.+-..
T Consensus 281 ---------------------------wv~~~-------------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 281 ---------------------------WVINS-------------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ---------------------------eeeec-------------cccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence 11100 00237778888888877 7888999988866432
Q ss_pred cCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCce---------eE
Q 001178 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK---------VM 867 (1131)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~---------~~ 867 (1131)
.... ..+ .. +...+ .... -+...+..++++.-....+.+|.+.+.. +.
T Consensus 319 ~~~~--------------~~~---h~-~~~~~---p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Ll 375 (691)
T KOG2048|consen 319 REFK--------------NMD---HR-QKNLF---PASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLL 375 (691)
T ss_pred cccC--------------chh---hh-ccccc---cccc--eeecCccceEEEEeccccccceeccCcccccccChhhhe
Confidence 2100 000 00 00000 0111 1233445555555557778888876541 12
Q ss_pred EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE-----EeecccccCeeEEEEccCCCEEEEEe-CCCcE
Q 001178 868 TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK-----TKLKGHQKHITGLAFSTNLNILVSSG-SDAQL 941 (1131)
Q Consensus 868 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~s~dg~~l~s~~-~Dg~v 941 (1131)
+........|.|.+.|| +|++||.++- ..++||.+...-.+ .....-.-..+.+.|+-|++.++.++ .+..+
T Consensus 376 kl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL 453 (691)
T ss_pred eeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence 22223456799999999 9999998764 46788887642222 12233344678899999999888888 67888
Q ss_pred EEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc-
Q 001178 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC- 1019 (1131)
Q Consensus 942 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~- 1019 (1131)
...++++........++.. .....++.++.||+|+++++. ..+.|.+|++.+++........ ...|++++|+|
T Consensus 454 e~~el~~ps~kel~~~~~~--~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~ 528 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQ--AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPF 528 (691)
T ss_pred EEEEecCcchhhhhccccc--cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---Ccceeeeecccc
Confidence 8888887554333222222 223789999999999999984 6899999999987765544333 57899999995
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1020 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+-..|+.+..|+.++-||++..++ .+.........++.-.+-.-....+.|+|.++..+++-+ .+-+.+.|..
T Consensus 529 ~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~ 601 (691)
T KOG2048|consen 529 VRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFS 601 (691)
T ss_pred ccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecC
Confidence 556888888999999999954331 111111100000000011111235778887766666554 3345565654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=256.58 Aligned_cols=287 Identities=16% Similarity=0.242 Sum_probs=247.8
Q ss_pred ccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEE
Q 001178 337 PRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 337 ~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
|....+++. |.++|.++.|+-||+| ..+++.|.+|++|+...|.+++ ++.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeeec
Confidence 444455554 8999999999999997 6667789999999999999887 588999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe---CCCceeEE
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD---LSGRKLFQ 492 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd---~~~~~~~~ 492 (1131)
+.+.|...+++|+.|+.|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| .+-++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999998766 6899999999999999998 899999999999999 45678888
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+......|.++.+.. ..|++|+.||+++.||++.++..... -+.+|+++.|++|++..+.++. ++.+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeeec
Confidence 988889999998743 67999999999999999987766544 3457999999999999999887 8999999
Q ss_pred eCCCCeeeEEEecccCCceE-EEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
|-.+|++++.+.+|.+.... .++++....++++|++||.+++||+.....+..+..++.. .+.+++++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-IVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-eEEeeecccCccceeEec
Confidence 99999999999999875443 3667777789999999999999999999999888877652 478999999877777775
Q ss_pred CCCcEEEEe
Q 001178 652 ADQGIKILA 660 (1131)
Q Consensus 652 ~dg~i~iw~ 660 (1131)
.. .+..|.
T Consensus 290 ~~-~~~~~~ 297 (307)
T KOG0316|consen 290 GH-GDLFWY 297 (307)
T ss_pred CC-ceecee
Confidence 44 455554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=270.56 Aligned_cols=245 Identities=19% Similarity=0.312 Sum_probs=224.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++.+|.++|.|+++.|-..++++|+.|++|+|||+.+|+.. .++.||-..|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 68899999999999999999999999999999999998743 37899999999999999888 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| ...+.++.+.||-..|.|++.+|.- +.|++|+.|.++++||+++......+.+|..+|.++.+.|-...+++++.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 9 8888999999999999999998876 58999999999999999999999999999999999999998899999987
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.|. |+-|++..|..+..+..+.. .|++++.+.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~--iintl~~ns 370 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA--IINTLSVNS 370 (460)
T ss_pred ---CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc--eeeeeeecc
Confidence 99999999999999888887665 899999999999999988874 89999999999888765544 688999888
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+ ++++|+++|.+.+||..++
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 76 7888999999999999888
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=271.31 Aligned_cols=300 Identities=15% Similarity=0.314 Sum_probs=267.0
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.+|..+|+.+-|.|+-. ++++++.|.+|++|| .+|+....++||...|..+.|+ ..|+++++++.|-.+++||
T Consensus 103 ~l~g~r~~vt~v~~hp~~~--~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEA--LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFD--ASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred hhhccccceeeeeeccCce--EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEe--cCccEEEecCCccchhhee
Confidence 4678999999999999988 899999999999999 9999999999999999999985 4568999999999999999
Q ss_pred CCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE
Q 001178 528 YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 528 ~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1131)
.++ ..++....+|...|.++.|-|.|.++++++. |.+|+.|+..+|.++.+|.+|.. .+..+..+.||..++++
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr----D~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR----DNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASC 253 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc----ccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEec
Confidence 987 4555677788899999999999999999997 89999999999999999999887 89999999999999999
Q ss_pred EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccccc
Q 001178 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1131)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1131)
+.|.+|++|-+.++++...+..|.+ +|.+++|.|... +.. +.+
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~--~~~-------i~~-------------------------- 296 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESS--YPS-------ISE-------------------------- 296 (406)
T ss_pred CCCceEEEEEeccchhhhhhhcccc--ceEEEEeccccc--Ccc-------hhh--------------------------
Confidence 9999999999999988888887777 788998887532 000 000
Q ss_pred ccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCC
Q 001178 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1131)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1131)
T Consensus 297 -------------------------------------------------------------------------------- 296 (406)
T KOG0295|consen 297 -------------------------------------------------------------------------------- 296 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
++ +... .+.
T Consensus 297 ----------------at----------------------------------------------~~~~---------~~~ 305 (406)
T KOG0295|consen 297 ----------------AT----------------------------------------------GSTN---------GGQ 305 (406)
T ss_pred ----------------cc----------------------------------------------CCCC---------Ccc
Confidence 00 0000 456
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE
Q 001178 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|++|+++.+|+++++||+.++++...+..|..-|+++.|
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 788888 89999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEc
Q 001178 926 STNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
..+..+++||+-|.++++|.-
T Consensus 385 h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCCceEEeccccceeeeeec
Confidence 999999999999999999963
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-32 Score=307.40 Aligned_cols=284 Identities=23% Similarity=0.374 Sum_probs=249.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc--ccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+...|.|+.|||+|+. +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 5889999999999995 9999999999999997666 322 35799999999999999999
Q ss_pred EEEEeCCCeEEEEEec-CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
+++++.|++|+|||+. .+.++ +++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~---~~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNL---KTLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEE---EEecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 9999999999999994 33433 47889999999999999997 899999999999999 77899999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+.. .++++.|+|++.++++++. ++.+++||+..+
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 99995 5668999999999999999999883 344444433 5999999999999999986 889999999999
Q ss_pred eeeEEEecccCC--ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE--CC
Q 001178 578 ALKRTYIGFRKK--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--AD 653 (1131)
Q Consensus 578 ~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--~d 653 (1131)
..+..+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+..|. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999998875 34445567789999999999999999999999888888774 44789999999999999998 68
Q ss_pred CcEEEEec
Q 001178 654 QGIKILAN 661 (1131)
Q Consensus 654 g~i~iw~~ 661 (1131)
+.+++|..
T Consensus 446 ~~~~~w~~ 453 (456)
T KOG0266|consen 446 GLIRLWKY 453 (456)
T ss_pred ceEEEecC
Confidence 99999975
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=270.68 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=233.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|+|+.+..+ .+++|..|++|+|||.++.++++ ++.||++.|.|+.|. .+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence 5678999998643 48999999999999999988876 588999999999984 56999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc---eeEEecCCccCeE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPVY 501 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~h~~~v~ 501 (1131)
+|+.|.+|+|||+++|+++. ++.+|...|..+.|+.. +++|++.|.++.+|| .+.. +...+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999876 67899999999999843 799999999999999 3332 2345779999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
.+.|. .+++++++.|.+|++|++.+.+....+.+|...|.++.+ .|+++++|+. |.+|++||+..|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99873 269999999999999999999999999999999988877 4788888886 9999999999999999
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE-------EeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS-------TEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
.+.||.. -|.++.| +.+.+++|+.||+|++||+..+..... ...-.+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999877 8999999 567899999999999999987643211 1112334467888885 56789999999
Q ss_pred cEEEEecCCCc
Q 001178 655 GIKILANADGL 665 (1131)
Q Consensus 655 ~i~iw~~~~~~ 665 (1131)
+|.|||+.++.
T Consensus 470 tILiWdFl~~~ 480 (499)
T KOG0281|consen 470 TILIWDFLNGP 480 (499)
T ss_pred eEEEEEcCCCC
Confidence 99999998773
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=254.26 Aligned_cols=249 Identities=18% Similarity=0.323 Sum_probs=216.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... .....+.+|.++|..+.|.+|+. .++++|.|++++.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 577999999999999999999999999999999976543 23446889999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+|++++++++|..-|++++.. .-+..++.+++.|+++++||++.......+. ....++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 9 9999999999999999999743 2233577789999999999999877766553 3456999999999999999998
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCCCC--Ccc
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLP--SLP 636 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~i~ 636 (1131)
|+.|++||++.......+.+|.+ +|+.+..+++|.++.+-+.|.++++||++.. .++..+..+.+.- ...
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ---cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 88999999999999999999887 9999999999999999999999999998753 3466666554432 345
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.++|+|++..+..|+.|..+++||...
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred eeeccCCCCccccccccceEEEeeccc
Confidence 789999999999999999999999654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=244.39 Aligned_cols=242 Identities=16% Similarity=0.290 Sum_probs=206.5
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCccceeeee-ecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 57899999999999998 999999999999999999864444333333 47999999999999999 899999999999
Q ss_pred EEe-C--CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc---eeEEecCCCceEEEEEEccCCCE
Q 001178 482 VWD-L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 482 iwd-~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
||. . +-+++.++.||...|.+++|+ .+|.+|++++.|+.|-+|.++... ....+..|...|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws--~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWS--ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEc--CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 998 3 346788999999999999995 566899999999999999987543 44578889999999999999999
Q ss_pred EEEEeecCCCCceEEEEeCC---CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNES---EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|++++. |.+|++|.-. .-.+++++.+|++ .+.+++|++.|..|+++++|++++||...+. + ...+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~-~~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L-SGMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----c-chhcc
Confidence 999998 9999999866 2357889999877 8999999999999999999999999986532 1 12233
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
..++.++|. ...+++++.|+.|++|.-.
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEec
Confidence 478889998 4579999999999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-31 Score=264.00 Aligned_cols=291 Identities=18% Similarity=0.285 Sum_probs=230.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++..|.+.|..+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999988777777889999999999999999999 79999999999999
Q ss_pred e-CCCceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 484 D-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 484 d-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
| .+|.....+. +|...+.+++|.| ||..+++|+.|+++..||++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlD-------------------------------- 342 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLD-------------------------------- 342 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCC--------------------------------
Confidence 9 7777665553 2334555555533 33445555555555555442
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
|.......+.....|..+++++||+++++.+.|..|++++..+......+..+. +|++.+.|
T Consensus 343 ---------------gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS 404 (519)
T KOG0293|consen 343 ---------------GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSIS 404 (519)
T ss_pred ---------------cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEc
Confidence 223333333344468889999999999999999999999998876665554433 79999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 642 KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+++++++.-.+..+++||++.. ..++.+.||...
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~-------------------------------------------- 439 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG-------------------------------------------- 439 (519)
T ss_pred CCCcEEEEEcccCeeEEeecchh-hHHHHhhccccc--------------------------------------------
Confidence 99999999999999999999855 555554443211
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
.+++
T Consensus 440 ----------------------------------------------------------~fiI------------------ 443 (519)
T KOG0293|consen 440 ----------------------------------------------------------HFII------------------ 443 (519)
T ss_pred ----------------------------------------------------------ceEE------------------
Confidence 1111
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec-CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF 879 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~ 879 (1131)
.-||- .+.+++++|+ |++|+||+..+++++..+.+|...|.|
T Consensus 444 ------------------------------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 444 ------------------------------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNC 487 (519)
T ss_pred ------------------------------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeE
Confidence 11221 2457899999 899999999999999999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
++|+|.+..++|+|++||+|+||...
T Consensus 488 VswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 488 VSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999999999999865
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-31 Score=291.50 Aligned_cols=245 Identities=19% Similarity=0.362 Sum_probs=225.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC--------cc--------------------ceeeeeecCcCCeeEE
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--------DL--------------------CQSLEIDAHVGGVNDL 460 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~~~~h~~~V~~l 460 (1131)
...++|..||+|+..||.|..|..|++|.+...+ .+ ....++.||.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4579999999999999999999999999987421 00 1224588999999999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1131)
.|+|+.+ +|++||.|+++|+|. .+..++..++||..||+.+.|+| .|-+++|+|.|++-++|..+.......+.+
T Consensus 458 sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 458 SFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcc
Confidence 9999999 899999999999999 88889999999999999999974 568999999999999999999999999999
Q ss_pred CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 540 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
|-..|.|+.|+|+..|+++++. |.++++||..+|..++.|.||+. +|.+++|+|+|.+|++|++||.|.+||+.+
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred cccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 9999999999999999999987 99999999999999999999877 999999999999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++..+..|. ..|.++.|+.+|..||+|+.|.+|++||+...
T Consensus 609 ~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Ccchhhhhccc--CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999988774 48999999999999999999999999998654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=278.38 Aligned_cols=291 Identities=17% Similarity=0.260 Sum_probs=245.8
Q ss_pred ccceeeec-cCCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCCEE
Q 001178 337 PRAVACTM-HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 337 ~~~~~~~~-~h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
|...++++ +|+..|+++.|.| .+ .||++|+.|+.|+||++.. +++++ ++.||..+|.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred cHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 55566666 4999999999999 56 5899999999999999987 66665 5889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
.++|+++|..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 999999999999999999999999999987652 21 2446899999999955 899999999999999 89999999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+..|-+.|..+.|. +++..+++.++|+.+++|+.+..-.+.. .........++..+|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 99999999999985 5668999999999999999987665542 2333446789999999999998876 889999
Q ss_pred EeCCCC---eeeEEEecccCCce-EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC-CCE
Q 001178 572 WNESEG---ALKRTYIGFRKKSA-GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNL 646 (1131)
Q Consensus 572 wd~~~~---~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~ 646 (1131)
+.+... ...+.|.+|..... ..+.|||||.+|++|..||.+.+||.++-+.+..++.|.. .+..+.|+|. ...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 986542 23345677654433 3489999999999999999999999999999999887744 7899999994 567
Q ss_pred EEEEECCCcEEEEe
Q 001178 647 LVVTTADQGIKILA 660 (1131)
Q Consensus 647 l~~~~~dg~i~iw~ 660 (1131)
+|+++.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 89999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=293.30 Aligned_cols=291 Identities=27% Similarity=0.416 Sum_probs=246.8
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...|.++.|+++|..+++++.++.+++|+...... .+.. .+ .+|...|.+++|+||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------------~~~~-~l-~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------------NLLR-EL-SGHTRGVSDVAFSPDG 215 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------hhhc-cc-cccccceeeeEECCCC
Confidence 467889999999999999999999999998633211 0111 11 3699999999999999
Q ss_pred CEEEEEe-CCeEEEEEC-CCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG-GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
+++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|+++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL 294 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence 9999999 899999999 66699999999999999999999 67999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC-CceEEEEcCCCcEEEEEe-CCeEEEEeCCCccccee
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~ 1001 (1131)
+|++|+++|++++.|+.|++||+.++... +.......... .+..++|+|++.+++++. |+.+++||+..+..+..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99999999999999999999999998754 22233333323 789999999999999976 67999999999999999
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+.+|......+.+..++++++++++|+.|+.|++|++.++..+..+.++. . -....+.++| .++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~---------~--~~~~~~~~~~-~~~~~~s 439 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS---------K--AAVSDLSSHP-TENLIAS 439 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC---------C--CceeccccCC-CcCeeee
Confidence 98885322366677778899999999999999999999999999888763 0 1123577888 5679999
Q ss_pred Ee--cCCcEEEEecC
Q 001178 1082 GL--TDGSVKVIEPS 1094 (1131)
Q Consensus 1082 ~~--~Dg~v~iW~~~ 1094 (1131)
++ .|+.+++|...
T Consensus 440 ~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKYD 454 (456)
T ss_pred cCcCCCceEEEecCC
Confidence 98 79999999864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-27 Score=252.80 Aligned_cols=498 Identities=14% Similarity=0.160 Sum_probs=350.9
Q ss_pred cCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce-eEEecCC-ccCeEEEeecccCCccEEEEEecCCeEEEEeCCC
Q 001178 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK-LFQFEGH-EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
..+|.++||+.+.+ .||.+-.||.|-||+ ..+-. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+-+
T Consensus 25 Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEeccc
Confidence 45699999999999 689999999999999 43332 2345554 4679999997 346899999999999999999
Q ss_pred CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcC
Q 001178 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
.+.+..+...++.|.+++.+|.+..++.++. +|.++.++...++...... ....+.+.++.|+|++..+++|+.|
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999999999986 7888888887777654322 2233589999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEEecc-----C-CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccc
Q 001178 610 NQIKFWDMDNVNMLTSTEAE-----G-GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~-----~-~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1131)
|.|++||...+..+...... . ...-|.++.|-.++ .+++|...|+|.+||...+ .+.+.+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~------------ 241 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH------------ 241 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh------------
Confidence 99999999998877632211 1 22235666666554 6889999999999998777 222211
Q ss_pred cccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCC
Q 001178 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1131)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 763 (1131)
T Consensus 242 -------------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 242 -------------------------------------------------------------------------------- 241 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
..|...|.+++..++++++++++-|+.+..|...+.... |- .......|...+++++..+
T Consensus 242 ~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv-------~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 242 SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WV-------INSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------ee-------eeccccCCcccceeeeeec
Confidence 126778889999999999999999999887765542110 11 1112236889999999988
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeE-EEEeCCCCcEEEEEeCCCcEEEEEeecce---------eEEe
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGMEDSTIQIYNVRVDE---------VKTK 912 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~I~iwd~~~~~---------~~~~ 912 (1131)
+ .+++|+ |.++.+-.....+...-......+-.+ +...| .++|..--.+..+.+|.+-+.. +.+.
T Consensus 302 ~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL 377 (691)
T ss_pred c--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheee
Confidence 7 677777 777777655432111111000001111 22233 3344444456677888775541 1122
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE--eCCeEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAI 990 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~v 990 (1131)
.......|.+.+.||||++++.+.-. .+++|.++............... ..-.+..+.|+-|+..++.. ....+.+
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchh-hhccceeeEEEecCceEEEEecccceeEE
Confidence 22234569999999999999987643 57888887633222222111111 11367788899888877664 4677888
Q ss_pred EeCCCc--ccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEE
Q 001178 991 YDGSKM--ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLV 1068 (1131)
Q Consensus 991 wd~~~~--~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1068 (1131)
+++.+. +....+... .....|+.+..|+||+|||+.+.+|.|.+|++++++......... .....
T Consensus 456 ~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln------------~~vTa 522 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN------------IDVTA 522 (691)
T ss_pred EEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC------------cceee
Confidence 877653 333333222 225789999999999999999999999999999988665543222 23346
Q ss_pred EEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1069 VTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1069 v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
..|+|..-+.|+.+..|+.+.-||+
T Consensus 523 ~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred eeccccccCcEEEEecCCeEEEEec
Confidence 7888777789999999999999999
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=267.02 Aligned_cols=638 Identities=17% Similarity=0.232 Sum_probs=350.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|++.|+.+.|||-...|||+|+.|..|+||.+..|-... .......+.+..-.|-|+.|+|...-|
T Consensus 77 ~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpTaDgi 143 (1012)
T KOG1445|consen 77 AHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPTADGI 143 (1012)
T ss_pred cccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccCcCce
Confidence 4999999999999877799999999999999997432111 001122455666788999999977666
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccC-eE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAP-VY 501 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~-v~ 501 (1131)
...+..|+++|||+.+++.+ .++.+|...|.+..|+.||+ ++++++.|+.|+||| ..++.++...+|.+. -.
T Consensus 144 l~s~a~g~v~i~D~stqk~~---~el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 LASGAHGSVYITDISTQKTA---VELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred EEeccCceEEEEEcccCcee---ecccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 66667899999999998754 47899999999999999999 899999999999999 788899998999764 23
Q ss_pred EEeecccCCccEEEEEecC----CeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 502 SVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
.+.|. ++-..|++.+.+ ..|++||.+...... ++... ..|.--.|.||.++|+.++. ++.+++.+.+
T Consensus 219 Rv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~s-tGvLiPl~DpDt~llfLaGK---G~~~l~~lE~ 292 (1012)
T KOG1445|consen 219 RVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSS-TGVLIPLYDPDTRLLFLAGK---GTNKLFMLEM 292 (1012)
T ss_pred eeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecc-cceEeeeecCCCceEEEecC---CcceEEEEEe
Confidence 34443 332456665544 578999987654432 33322 24666678999999998875 4778888877
Q ss_pred CCCeeeE--EEecccCCceEEEEEeCCCCEEEEEEc-CCcEE--------------------------------------
Q 001178 575 SEGALKR--TYIGFRKKSAGVVQFDTTRNRILAAGE-DNQIK-------------------------------------- 613 (1131)
Q Consensus 575 ~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~-------------------------------------- 613 (1131)
...+... .+...-.......++-|....-+..++ +..+.
T Consensus 293 ~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~a 372 (1012)
T KOG1445|consen 293 QDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTA 372 (1012)
T ss_pred cCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCc
Confidence 6543211 111000000011111111110000000 00000
Q ss_pred -EEEcCCCeEEEEEe------ccCCC----------------CCcceEEEcCCCCEEEEEECCCcEEE---EecCCCchh
Q 001178 614 -FWDMDNVNMLTSTE------AEGGL----------------PSLPRLRFNKEGNLLVVTTADQGIKI---LANADGLRA 667 (1131)
Q Consensus 614 -iwd~~~~~~~~~~~------~~~~~----------------~~i~~v~~sp~~~~l~~~~~dg~i~i---w~~~~~~~~ 667 (1131)
-|=-.+.+.+.... .|+.. .++......|...--.....|..-.+ =.+.++ ..
T Consensus 373 geWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~-~e 451 (1012)
T KOG1445|consen 373 GEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK-EE 451 (1012)
T ss_pred cceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc-hh
Confidence 01000111111110 00000 00000000000000000000000000 000000 01
Q ss_pred hhhhhccccccccc------cccc--cccCccceeccccccccccc---------c----------cCCCCCCccccccC
Q 001178 668 LRAIETRAYETSRA------STEM--KVPGSAVVTTITPVLSKAER---------V----------DRSSPARPSTILNG 720 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~sp~~~~~~~---------~----------~~~~~~~~~~~l~~ 720 (1131)
.+.+.....+.... .... ....... .++|..-.... . .+..+.++..-+.
T Consensus 452 ~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s--~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g- 528 (1012)
T KOG1445|consen 452 VRELDYRPYEKENGVHTPNADADSTQGNSSPIS--TISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFG- 528 (1012)
T ss_pred hhhhcccccccccCccCCCcccccccCCCCCcc--ccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccC-
Confidence 11110000000000 0000 0000000 00000000000 0 0000000000000
Q ss_pred CCccccCCCCceecccc------CCCCcceeeecccCCceeEE-EEcCC-CCCCccceEEEEeecCCceEE--Eeeecce
Q 001178 721 ADSAARGIEKPRNLEDI------SDKTKPWELTEIVDPLQCRV-VAMPE-STDSASKVARLLYTNSGIGIL--ALWSNGV 790 (1131)
Q Consensus 721 ~~~~~~~~~~~~~~~~~------d~~v~~w~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~l~~s~~g~~l~--~~~~dg~ 790 (1131)
...+.......+.+. -|.+.-|.-.......+... ..+.+ ...-.+....+ ..+...++ ..+..|.
T Consensus 529 --~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGf--can~~rvAVPL~g~gG~ 604 (1012)
T KOG1445|consen 529 --KPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGF--CANNKRVAVPLAGSGGV 604 (1012)
T ss_pred --CCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCce--eeccceEEEEecCCCce
Confidence 000000000000000 01111111100000000000 00000 00011111222 22333333 3456799
Q ss_pred eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC-CCCEEEEEe-CCeEEEEECCCc----
Q 001178 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK-NDSYVMSAG-GGKVSLFNMMNF---- 864 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~---- 864 (1131)
|.||+++.....|++....- .....|+.+.|.| |...||++. ||.|++|.+..+
T Consensus 605 iai~el~~PGrLPDgv~p~l--------------------~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMPGL--------------------FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred EEEEEcCCCCCCCccccccc--------------------ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 99999988777776642211 2466788999988 667888888 799999998754
Q ss_pred ---eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcE
Q 001178 865 ---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1131)
Q Consensus 865 ---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v 941 (1131)
+....+..|...|+++.|+|-...+||+++.|.+|++||+.+++....+.+|++.|.+++|||||+.+|+.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 34456778999999999999778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-----eCCeEEEEeCCCcc--cceeeecCCCCCCCeEE
Q 001178 942 IFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-----HETQLAIYDGSKME--CIRQWVPQDVLSSPISS 1014 (1131)
Q Consensus 942 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-----~d~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~ 1014 (1131)
++|+..+++. .+....+..+.....+.|.-||+++++. +...|.+||..+.. .+......- .-.+.-
T Consensus 745 rVy~Prs~e~----pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~Lv 818 (1012)
T KOG1445|consen 745 RVYEPRSREQ----PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPLV 818 (1012)
T ss_pred EEeCCCCCCC----ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCcccc
Confidence 9999988653 2333333333566788999999998873 35679999987643 222211110 112222
Q ss_pred EEEccCCC-EEEEEecCCcEEEEECCC
Q 001178 1015 AAYSCNSQ-LIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1015 i~~s~dg~-~l~s~~~dg~i~vwd~~~ 1040 (1131)
-.+.+|.. ++++|-.|..|++|.+--
T Consensus 819 P~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 819 PHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred ccccCCCceEEEecCCCceEEEEEecC
Confidence 23455666 455666889999998754
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=268.68 Aligned_cols=284 Identities=15% Similarity=0.243 Sum_probs=247.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
...|..+.|.|+|+.|++|+..|.+.+|+..+-. -...+++|..+|+++.|+++|. +++||..+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn---FEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN---FETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee---HHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccchh
Confidence 4579999999999999999999999999985422 1123678999999999999999 8999999999999997767
Q ss_pred eeEEecCCc-cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 489 KLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 489 ~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.+..+.+|. ..|++++|+|. ...++++++||+|+|||....+....+.+|+-.|.++.|+|.-..+++++. |.
T Consensus 171 nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----Dn 244 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----DN 244 (464)
T ss_pred hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----Cc
Confidence 777776665 89999999873 368999999999999999999888889999999999999999999999986 77
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNL 646 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~ 646 (1131)
.|++||.++|.++.++.+|.+ .|..+.|++++++|++++.|..++++|+++.+.+.....|.. .++++.|+| ...+
T Consensus 245 lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESL 321 (464)
T ss_pred eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccc
Confidence 999999999999999999877 899999999999999999999999999998888888776654 799999999 6678
Q ss_pred EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
|.+|+.||.|..|.+.... .+..
T Consensus 322 ftsgg~Dgsvvh~~v~~~~-p~~~-------------------------------------------------------- 344 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEE-PLGE-------------------------------------------------------- 344 (464)
T ss_pred eeeccCCCceEEEeccccc-cccC--------------------------------------------------------
Confidence 8999999999999875220 0000
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
. ..+|...|.+++|.|-|..|++++.|.++++|.-..
T Consensus 345 ----------------------------------i-~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 345 ----------------------------------I-PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ----------------------------------C-CcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 0 034889999999999999999999999999997544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=276.57 Aligned_cols=282 Identities=26% Similarity=0.422 Sum_probs=248.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.++|++++|+|+++ ++++|+.||.|++|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 4999999999999998 58889999999999998876443 356888999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++++.|+.|++||+.+++... .+..|...|.++.|+++++ ++++++.|+.+++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999865443 5678998999999999977 788888899999999 6688888888999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.+.+||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99765 578888888999999999988888788888889999999999999999875 889999999998888888
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+.. .+.++.|++++.++++++.||.|++|++.+++....+..+. ..+.+++|+|+++++++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66555 89999999998888888889999999999988888877443 3799999999999999999999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=268.77 Aligned_cols=287 Identities=18% Similarity=0.282 Sum_probs=243.1
Q ss_pred CCCccceEEEEeec-CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec
Q 001178 764 TDSASKVARLLYTN-SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1131)
.+|...|.++.|.| .+..+++++.|+.|++|++ |+ .+.+++... +|..+|..++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrtf~--gH~k~Vrd~~~s 267 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRTFK--GHRKPVRDASFN 267 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehhhh--cchhhhhhhhcc
Confidence 45999999999999 8899999999999999974 33 344444333 799999999999
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
.+|..+.+++ |+.|++||+++|+++..+.. ...++|+.|.|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 9999999999 99999999999999999974 567899999996668999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCC---cc
Q 001178 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSK---ME 997 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~---~~ 997 (1131)
.+.|-++|+++++.+.|++++||+....-..... .........++..+|.+.++++- -|..|.+|.+.. ..
T Consensus 347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i-----~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI-----ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred eeEEccCCceEeeeccCccEEEEEcCCCccchhh-----cchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 9999999999999999999999999875432221 11122456789999999999984 599999998764 33
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
..+.+.+|.. .+.-..+.|||||++|++|+.||.+.+||..+-++++.+..+. -.++.+.|+|..+.
T Consensus 422 kkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~------------~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 422 KKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD------------QPCIGVDWHPVEPS 488 (503)
T ss_pred Hhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC------------cceEEEEecCCCcc
Confidence 4445556543 5566789999999999999999999999999999998887543 23457999999999
Q ss_pred eEEEEecCCcEEEEe
Q 001178 1078 QLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~ 1092 (1131)
.+|++|.||.|++|+
T Consensus 489 kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGWDGLIKIWD 503 (503)
T ss_pred eeEecccCceeEecC
Confidence 999999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=244.73 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=250.1
Q ss_pred ccCCCcEEEEEEec---CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 344 MHQGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 344 ~~h~~~V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
-+|+.+|..++||| +| ++|++++.||.--+-+=++|.-+. ++.||.+.|.+..+..|
T Consensus 11 ~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~~n 70 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLNKN 70 (334)
T ss_pred cCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecCch
Confidence 46999999999995 67 689999999998888888888776 58899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCcc
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~ 498 (1131)
..+.|+++.|-+.+|||.-+|..+. . ..|..-|.+++|+.|.. +|++|+.++.+||+| ....+...+.+|.+
T Consensus 71 a~~aasaaadftakvw~a~tgdelh---s-f~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELH---S-FEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhh---h-hhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 9999999999999999999998775 3 35888999999999999 799999999999999 44456788999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|..+-|.... +.|++.+.|++||+||.+++.....+... .+|+++.++++|++|.++- .+.|..||..+..
T Consensus 145 ~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEecccccc
Confidence 99999997544 68889899999999999999888877644 4699999999999988774 6689999999999
Q ss_pred eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
+++.+.... .|.+...+|+...+++|++|+.++.||..+++.+... ..++..+|.|+.|+|+|...++|+.||+|++
T Consensus 217 ~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 217 LLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred ceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999888644 5888999999999999999999999999999988875 2344558999999999999999999999999
Q ss_pred EecCCC
Q 001178 659 LANADG 664 (1131)
Q Consensus 659 w~~~~~ 664 (1131)
|....+
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 998665
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=253.14 Aligned_cols=293 Identities=19% Similarity=0.278 Sum_probs=243.8
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....+.+..|||||.++++++-||.|.+|+..++....+-+..+. ...+ -+...|.|+.||.|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~fM-------Mmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DNFM-------MMDDAVLCISFSRDS 275 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------ccee-------ecccceEEEeecccH
Confidence 345677899999999999999999999999887765544332221 1111 268899999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
..+|+|+ ||+|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.++++--+.+|+++..++||++-|+..
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999 9999999999999999998 8999999999999 77888899999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC--cEEEEEeCCeEEEEeCCCccccee
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ--VRLLVNHETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~--~~l~~~~d~~i~vwd~~~~~~~~~ 1001 (1131)
.|++||.++++++.||+|++|+.++.++...... ....-++..+..-|.+ .++++...++++|.++. |+.++.
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~----~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrs 429 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP----LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRS 429 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccC----CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEee
Confidence 9999999999999999999999999887554322 1123566666666643 35556678899998876 777777
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+....-..+...+.+.||.|.++.+.++|+.++.|.+.+|++...+..+. ..++.+..+| ..++|++
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE------------kdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE------------KDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc------------ccccccccCc-ccchhhh
Confidence 76655456777888999999999999999999999999999888877544 3345688888 5689999
Q ss_pred EecCCcEEEEec
Q 001178 1082 GLTDGSVKVIEP 1093 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~ 1093 (1131)
-++||.+++|..
T Consensus 497 YsEDgllKLWkp 508 (508)
T KOG0275|consen 497 YSEDGLLKLWKP 508 (508)
T ss_pred hcccchhhhcCC
Confidence 999999999963
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=224.26 Aligned_cols=311 Identities=18% Similarity=0.231 Sum_probs=242.4
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+.+.+++.+..|.+++|+|.|. +.|+|+...+.+|-....-..++.. -......+....+-.+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 4566788899999999999998 7999999999998865432222100 0000011122233467899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecC--CCccceeeeeecCcCCeeEEEEecCCC--ceEEEEEc-CCCcEEEEe-CCCceeEE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNK--QLCIVTCG-DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~l~~s~d~~--~~~l~s~s-~d~~i~iwd-~~~~~~~~ 492 (1131)
|+|.+||+|+.|++|++.-... ........++.-|.+.|..++|..+.. ..+|++++ .|..|++-| ..|+....
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999976544 333344456888999999999976521 12666655 588888889 99999999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------CCceEEEEEEccCCCEEEEEeecCCC
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+.+|++-|.++- +-++.++++|+.|.+|++||++-......+.. ....|.++++.|.|++|+++..
T Consensus 179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~---- 251 (350)
T KOG0641|consen 179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA---- 251 (350)
T ss_pred ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC----
Confidence 999999998875 23457999999999999999988776664432 2247999999999999999976
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|....+||++.++.++.|..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...+...+..+.|+|.
T Consensus 252 dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 88899999999999999998766 8999999999999999999999999998642 11222222234447788999999
Q ss_pred CCEEEEEECCCcEEEEecC
Q 001178 644 GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1131)
.-.+++.+.|.++.+|.+.
T Consensus 331 d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWALN 349 (350)
T ss_pred cceeeeccCcceEEEeccC
Confidence 9899999999999999763
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=302.89 Aligned_cols=291 Identities=14% Similarity=0.185 Sum_probs=234.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|...|++++|+|+|+ ++|+|+.|++|+|||+.+...... .. ......+ .+...|.+++|+| ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~~----------~~~~~~~-~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-DI----------HYPVVEL-ASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-cc----------ccceEEe-cccCceeeEEeccCCCCE
Confidence 4899999999999998 599999999999999864211100 00 0000012 2346899999988 5789
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999876443 6789999999999997 667 899999999999999 778888888754 6788
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC----
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---- 576 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---- 576 (1131)
++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCccc
Confidence 998854 457899999999999999998765 355677888899999997 7888999886 89999999874
Q ss_pred --CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-----------ccCCCCCcceEEEcCC
Q 001178 577 --GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-----------AEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 577 --~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~i~~v~~sp~ 643 (1131)
...+..+.+|.. .+.+++|++++++|++|+.|+.|++|+......+.... ...+...|.+++|+|+
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 356778888765 78899999999999999999999999987654443221 1222335899999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
+..|++|+.+|.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=254.89 Aligned_cols=281 Identities=21% Similarity=0.299 Sum_probs=237.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|++++|||...+=+|+.+ .-.+.||+..+....+ .+......|.++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 5578999999996654344443 3489999998877665 2445577899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC-ceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG-RKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~ 504 (1131)
+|...|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||.++ .....+.+|++.|.|.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977644444 57899999999999998876 899999999999999444 44458899999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~ 583 (1131)
|+|.. +.+++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ ...+++||+.+| +.+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 98754 47999999999999999998865554456888999999999999999997 678999999855 455555
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..|+. .|+|+++..++..|++++-|+.+++||+.+-+.+..+...+ +|.+++.+|++..++.|..||.+.+-+
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeeh
Confidence 55555 99999999999999999999999999999989988887665 799999999999999999999987764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=232.06 Aligned_cols=247 Identities=20% Similarity=0.275 Sum_probs=218.6
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++..|+++|.++.|+-||+|.++++.|++|++|+...|.+++ ++.+|...|.+++.+.|+. .+++|+.|+.+.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34688999999999999999999999999999999999988665 7899999999999999998 699999999999
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEccCCCEEEE
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+|| .+|+.++.+.+|.+.|+.+.|+ ++...+++|+.|..+++||-+... ++..+......|.++.++ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 9999999999999999999995 455799999999999999987643 444566666678887775 567888
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ||+++.||++.|++...+.++ +|++++|+++++..++++.|+++++.|-.+|+++....+|....--..+
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 876 999999999999887777664 8999999999999999999999999999999999999888765445667
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++.....+++|++||.+.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999776
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=245.80 Aligned_cols=288 Identities=19% Similarity=0.344 Sum_probs=240.2
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
+++....+-|.+.|.++... ++ .+.+|+.||.++|||... +... ++.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~G-k~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKG-KSIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCC-ceEE-------------------EEecCCcceeeeE
Confidence 34455667799999999998 44 489999999999999874 4333 4779999999888
Q ss_pred EcCCC---CEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC-----
Q 001178 417 WSPDG---NFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS----- 486 (1131)
Q Consensus 417 ~spdg---~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~----- 486 (1131)
|.-.. ..+++++.|.++++|..+.++.. .......||...|.++...++|. .+++|+.|.+++||+ ..
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 86433 36999999999999999877642 22223459999999999999999 899999999999999 21
Q ss_pred --------------------CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 487 --------------------GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 487 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
+.++.++.||..+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ..+.+
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~ 305 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNC 305 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeE
Confidence 234677889999999999965 358999999999999999999888776654 35899
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCe---eeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCe-
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVN- 621 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~- 621 (1131)
+.++|..++|++++. +..|++||.+++. ....|.+|.+ .|.++.|+|... .|++|+.|+++++||+++-+
T Consensus 306 i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 999999999999987 8999999998753 4567888877 999999999875 67789999999999999876
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++..+..|.. .|.++.|+. +..+++|+.|.+|+|+.-
T Consensus 381 plydI~~h~D--Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 381 PLYDIAGHND--KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cceeeccCCc--eEEEEeccC-CceEEeccCcceEEEecc
Confidence 8888876644 899999986 668999999999999864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=249.95 Aligned_cols=230 Identities=20% Similarity=0.316 Sum_probs=202.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
...|.|+.+ |...+++|..|++|+|||..+-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 457999988 55689999999999999999876665 689999999999995 44 899999999999999 999
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
+++.++.+|...|..+.|+. .++++++.|.++.+||+....... .+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999843 589999999999999998766432 567888899999886 459999875
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
|.+|++|+..+++.++++.+|.. .|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|. .
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--N 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec--C
Confidence 99999999999999999999877 7877777 578999999999999999999999999987765 79999996 5
Q ss_pred CEEEEEECCCcEEEEecCCC
Q 001178 645 NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.+++|+.||+|++||+..+
T Consensus 411 krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ceeeeccccceEEEEecccc
Confidence 67999999999999999776
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=237.39 Aligned_cols=295 Identities=18% Similarity=0.328 Sum_probs=233.4
Q ss_pred cccccccccCCCCCCCccccccCCCCCCCCcccccCCCCchHHHHHhhccccCccccccCCCCCcccccCCCcc-cceee
Q 001178 264 IQSSVVAASSLPVQPNQVSVLKHPRAPSNTLGMIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLP-RAVAC 342 (1131)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~~ 342 (1131)
+-||...|+++.|.+.. | .+.++.+.+..+.+.+.. +... --+++
T Consensus 121 s~DG~lvATGsaD~SIK--i------------------ldvermlaks~~~em~~~--------------~~qa~hPvIR 166 (430)
T KOG0640|consen 121 SPDGSLVATGSADASIK--I------------------LDVERMLAKSKPKEMISG--------------DTQARHPVIR 166 (430)
T ss_pred CCCCcEEEccCCcceEE--E------------------eehhhhhhhcchhhhccC--------------CcccCCceEe
Confidence 56799999999998883 3 345555544433221000 1111 13566
Q ss_pred ec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
++ .|.++|+++.|+|... +|++|+.|++|+++|.......+ .+|++ ....+|.++.|+|.|
T Consensus 167 TlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~---------------qd~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 167 TLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVF---------------QDTEPVRSISFHPSG 228 (430)
T ss_pred ehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHH--HHHHh---------------hccceeeeEeecCCC
Confidence 66 5999999999999987 89999999999999987544332 23321 234689999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCcc-
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEA- 498 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~- 498 (1131)
.+|+.|..-.++++||+++-+|......-.+|++.|+++.+++.++ +.++++.||.|+||| .+++++.++. .|.+
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS--LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc--EEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 9999999999999999999887655545578999999999999999 899999999999999 9999999886 5654
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-----eEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.|++..| ..+++++++.+.|..+++|.+.++..+..+.+.+. .-+...|+....+++.--. ..+.++-||
T Consensus 307 evcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE---as~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE---ASNSLCSWD 381 (430)
T ss_pred eeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc---ccCceeecc
Confidence 5777777 56789999999999999999999999887766522 2345567777888776532 367899999
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
.+++..+..+...+++.+..+..+|.+.-+++++.|..+++|--
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 99998887777667779999999999999999999999999954
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=261.19 Aligned_cols=247 Identities=24% Similarity=0.405 Sum_probs=217.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.++|.+++|+|++++|++++.||.|++|++.+++.. ..+.+|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---EEEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 46689999999999999999999999999999999987633 35678999999999999997 79999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| ..++.+..+..|...+.++.|.+. +.++++++.||.|++||+++.+....+..+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 666788888899999999999765 568888888999999999988888888878888999999999999888864
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
++.|.+||.++++.+..+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+.. .+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcC
Confidence 88999999998988888886554 799999999999999999999999999998888777754433 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++.++++++.+|.+++|+..++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc
Confidence 9888888888999999998654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=276.46 Aligned_cols=305 Identities=18% Similarity=0.271 Sum_probs=247.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
++..|.+++.+|||.. +|||+ .||.++||+.+.--.. ...++.. .+...-.+..|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 5668999999999985 99999 8999999997531100 0111111 11222357799999999999999999
Q ss_pred EEEEeCCCeEEEEEecC----C-----------CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 424 IGVAFTKHLIHLYTYQG----S-----------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~----~-----------~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
||+|++|+.|.||+... . +..+....+.+|...|.+++|+|++. +++++|.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234557899999999999999999 899999999999999 888
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------CceEEEEEEccCCCEEEEEee
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+....+....+..+ ......+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999955 5589999999999999997664444433332 235789999999999999876
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-----CC------------EEEEEEcCCcEEEEEcCCCeEEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RN------------RILAAGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 624 (1131)
-..+...+.|.+..+-+.-..+.||+. ++.++.|+|. .+ .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 556677899999888888889999888 9999999883 11 56779999999999998887776
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+..-.. ..|.+++|+|||..|++++.||+|.++.++..
T Consensus 319 vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 6543332 27999999999999999999999999998654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=252.11 Aligned_cols=291 Identities=16% Similarity=0.243 Sum_probs=247.4
Q ss_pred cccceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 336 LPRAVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 336 ~~~~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
+|......++ |.++|..+.|-++..+ |++|+.|..|.+|++..++.... .++.|..+.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~it~ 224 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNITS 224 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCcce
Confidence 3444555555 9999999999999664 99999999999999987763221 157788899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 493 (1131)
+.|.++++++++++.|+.+++|++....... ++.||++.|+++.|..... .+++|+.|.+|++|| ..+.+..++
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheeccc
Confidence 9999999999999999999999999876544 7899999999999998776 599999999999999 667777665
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.. ...+..++.. ...+++|-.|+.|++||.+..........++ .|+++..+++|..+++++. |.++.+.|
T Consensus 300 l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viD 369 (459)
T KOG0288|consen 300 LP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVID 369 (459)
T ss_pred cc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeee
Confidence 42 3344555443 2578899999999999999999888887776 7999999999999999986 88999999
Q ss_pred CCCCeeeEEEeccc---CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 574 ESEGALKRTYIGFR---KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
.++......+.... ....+.+.|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|..++++
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 99998888776432 224677999999999999999999999999999999998887765579999999999999999
Q ss_pred ECCCcEEEE
Q 001178 651 TADQGIKIL 659 (1131)
Q Consensus 651 ~~dg~i~iw 659 (1131)
+.++.+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 999999999
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-29 Score=234.96 Aligned_cols=300 Identities=16% Similarity=0.249 Sum_probs=253.6
Q ss_pred CCCccceEEEEeec---CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 764 TDSASKVARLLYTN---SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
.+|..+|..++||| +|-.|++++.|+.-.+- +-.+|..+-. ..+|.+.|++.+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr----------------------~g~tgdwigt--feghkgavw~~~ 66 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR----------------------NGDTGDWIGT--FEGHKGAVWSAT 66 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhc----------------------cCCCCCcEEe--eeccCcceeeee
Confidence 55899999999985 89999999998764332 2334444332 237999999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeeccccc
Q 001178 841 LSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQK 918 (1131)
Q Consensus 841 ~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~ 918 (1131)
+..+....|+++ |-+-+|||.-+|..+..|. |...|.+++|+. |.+.|++|+.+..++|||++.. .+...+.+|.+
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg 144 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG 144 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCC
Confidence 999998889888 8899999999999998886 778899999999 8999999999999999999865 45667899999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC 998 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~ 998 (1131)
.|..+.|....+.++|+..|++|++||..++......... .++.++-.++||++|.++..+.|.+||..+...
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCceeEEeccccccc
Confidence 9999999999999999999999999999998876665543 789999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCe
Q 001178 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 999 ~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~ 1078 (1131)
++.+..+ ..|.+..++|+...+++|++|..++.||+.+|+.+...... |.++|. +|.|+| ++..
T Consensus 218 lKs~k~P----~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg---------h~gpVh--cVrFSP-dGE~ 281 (334)
T KOG0278|consen 218 LKSYKMP----CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG---------HFGPVH--CVRFSP-DGEL 281 (334)
T ss_pred eeeccCc----cccccccccCCCceEEecCcceEEEEEeccCCceeeecccC---------CCCceE--EEEECC-CCce
Confidence 9888765 58999999999999999999999999999999988775322 233343 799999 7789
Q ss_pred EEEEecCCcEEEEecCCCc--cccccccCCCCCCCC
Q 001178 1079 LAVGLTDGSVKVIEPSETE--RKWGVAVPVDNGTDN 1112 (1131)
Q Consensus 1079 l~s~~~Dg~v~iW~~~~~~--~~w~~~~p~~~~~~~ 1112 (1131)
.++|++||+|+||.....+ +.|....|...|.-+
T Consensus 282 yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~eev 317 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEEV 317 (334)
T ss_pred eeccCCCceEEEEEecCCCchhhccccChhhhcccc
Confidence 9999999999999986443 358888887766543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=292.13 Aligned_cols=270 Identities=16% Similarity=0.230 Sum_probs=214.1
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDL 444 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~ 444 (1131)
+|.+++|+..+.+..... ...-+..|.+.|.+++|+|+|++||+|+.|++|+|||.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 667888887754432210 00124468999999999999999999999999999998542 111
Q ss_pred c-eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCe
Q 001178 445 C-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1131)
Q Consensus 445 ~-~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1131)
. ....+. +...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.||.
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 4567999999986433 799999999999999 778888999999999999999753 4579999999999
Q ss_pred EEEEeCCCCceeEEecCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCC
Q 001178 523 IKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
|++||+++......+..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|.. .|.++.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666644 568899995 57999999986 8999999998765 4566777655 89999997 67
Q ss_pred CEEEEEEcCCcEEEEEcCCC------eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 601 NRILAAGEDNQIKFWDMDNV------NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++++++.|++|++||+..+ ..+..+..|. ..+.+++|+|++.++++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 4556665544 36889999999999999999999999997544
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=224.60 Aligned_cols=274 Identities=15% Similarity=0.207 Sum_probs=234.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+|...|.+|+|+-+|.+ ||+|+.|+++.+|+++..+..... ...+|.+.|-.++|+| ....
T Consensus 18 ~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~~-----------------~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKEL-----------------VYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhhh-----------------cccCCCcchhhheeCCCCCcc
Confidence 48899999999999996 999999999999999987554321 4679999999999998 5679
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
+|+++.|++|++||+..+++.... . ..+.=.-+.|+|+|+ +++.++.|..|.+.| .+.+.+... .....+.-
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne 152 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNE 152 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehh-cccceeee
Confidence 999999999999999999876532 2 233445689999999 799999999999999 444444333 35566788
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
++|+.+ +++++.....|.|.|..+...+....+..|...+.++.|+|+|+++|+|+. |..+.+||+..--+++.
T Consensus 153 ~~w~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERC 226 (313)
T ss_pred eeecCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhee
Confidence 888743 356777777899999999999999999999999999999999999999997 99999999999888888
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+..+. -+|..+.|+.+|++|++|++|..|-|-++.+|..+..++..+ +...++|+|...+||.++.|
T Consensus 227 isRld-wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 227 ISRLD-WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecccc-CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 88754 499999999999999999999999999999999999998765 57999999999999988765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=227.16 Aligned_cols=285 Identities=13% Similarity=0.143 Sum_probs=235.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|..+++-+.|+.+|. ||.+++.|.++.||-..+|+.+. ++.||++.|.|+..+-+.+
T Consensus 6 l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s~ 65 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDSK 65 (327)
T ss_pred cccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCcc
Confidence 446999999999999998 89999999999999999999887 5889999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-----cCCCcEEEEe-C-------CCce
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-----GDDKLIRVWD-L-------SGRK 489 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-----s~d~~i~iwd-~-------~~~~ 489 (1131)
++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+ +..+.|.++| . ...+
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 999999999999999999987753 2 24668999999999993 4433 3456788998 3 3445
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
...+..+...++.+-|.+.. ++|++|..||.|..||++++.... .-..|...|+.+.+++|..++++++. |.+
T Consensus 140 ~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dtt 213 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DTT 213 (327)
T ss_pred eEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Ccc
Confidence 77788888999999997654 799999999999999999986665 44668889999999999999999987 889
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc--EEEEEcCCC------------eEEEEEeccCCCCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ--IKFWDMDNV------------NMLTSTEAEGGLPS 634 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~------------~~~~~~~~~~~~~~ 634 (1131)
-.+||..+-+.++++.. ..++++.+++|...+++.|+.-.. |.--+.+.| +.+...+ +|.++
T Consensus 214 akl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGP 289 (327)
T KOG0643|consen 214 AKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGP 289 (327)
T ss_pred ceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccC
Confidence 99999999999999984 448999999999888888664322 221222222 2233344 45569
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
|++++|+|+|+..++|+.||.|++.-...
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999986654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=224.61 Aligned_cols=273 Identities=18% Similarity=0.270 Sum_probs=221.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC-cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
..+.|.+++|||....+++.||-||+||+|++... .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999873 3332 1356899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|+.+++||+.+++.. .+..|.++|..+.|-+...+..|+|||.|++|+.|| ....++.++. -..++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998533 477899999999999877655899999999999999 7777777765 45667777
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC--ee
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--AL 579 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~ 579 (1131)
..- ..+++.+..++.|.+|++++......... -.-.+++++.-+|....+.|+. +|++.+..+..+ +.
T Consensus 163 Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVL----YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hcc----CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 542 25788999999999999987665543222 2336889999998888888887 888888887765 44
Q ss_pred eEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 580 KRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 580 ~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
-..|+.|.. ..|+.++|+|.-..|++++.||++.+||-.....+...+.+.. +|++++|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 456666652 2467799999999999999999999999988777776665544 899999999999988664
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=256.99 Aligned_cols=299 Identities=18% Similarity=0.200 Sum_probs=215.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC---CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP---DG 421 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp---dg 421 (1131)
.|.+.|+++.||+||+| ||+|+.||.|+||.+...+...... ........ .+.. .+.+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~------~~~~~~~~--~~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAE------GDSSCMYF--EYNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccc------cccchhhh--hhhh-ccccCccccccccccc
Confidence 49999999999999995 9999999999999997744422100 00000000 0000 00011111111 00
Q ss_pred C--EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 422 N--FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 422 ~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
+ ..-.+.....+.+-+..-.-.-.++..+.||.+.|.++.||.++ +|+|+|.|++||+|+ ....+++.|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11112222222111111111113445789999999999999876 699999999999999 7788888886 999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|+|++|+|.+| +++++|+-||.||+|++...+...-...+ .-|++++|.|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999766 89999999999999999766555443333 67999999999999999998 9999999998877
Q ss_pred eeEEEecc-------cCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 579 LKRTYIGF-------RKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~-------~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
.+..+.-+ ....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.||++++++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 76554321 12269999998754 46888999999999999888888888766554455678899999999999
Q ss_pred ECCCcEEEEecCC
Q 001178 651 TADQGIKILANAD 663 (1131)
Q Consensus 651 ~~dg~i~iw~~~~ 663 (1131)
++|..|++|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=216.80 Aligned_cols=236 Identities=13% Similarity=0.225 Sum_probs=203.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||+.+++.+.|+.+|.+|.+|+.|.+..||-..+|+.+. ++.||++.|+|++...+.+ ++++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 578999999999999999999999999999999998888665 7899999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEec-----CCeEEEEeCC-------CCceeEEecCCCceEEEEEEc
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYD-------NVGSRVDYDAPGLWCTTMLYS 550 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 550 (1131)
| .+|+++..+. ...+|..+.|++. |++++...+ .+.|.++|++ ..++...+..+...++.+.|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999998886 5678999998654 455555543 4678999988 344566777788899999999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
|-+++|++|.. +|.|..||+++|+....-...+...|+.++++++..++++++.|.+-++||..+.+.+++.....
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~ 232 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER 232 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence 99999999986 99999999999865554433445589999999999999999999999999999999988887654
Q ss_pred CCCCcceEEEcCCCCEEEEEECCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+|++.+++|....++.|+...
T Consensus 233 ---PvN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 233 ---PVNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred ---cccceecccccceEEecCCce
Confidence 799999999877777776543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=262.25 Aligned_cols=278 Identities=18% Similarity=0.300 Sum_probs=244.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...|.|..|+ ++ .+++|+.|++|.+||..++..+.. -+.||.+.|.+++|..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 467899999999 44 488999999999999999887752 277999999999999888899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|.+++|||+.+|+|.. .+.+|...|.++...+. ++++|+.|.+|++|+ .++..+..+.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999998776 78899999999988654 689999999999999 7799999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 582 (1131)
..+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++. |+.|++||+.++ +++..
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t 408 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT 408 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence 874 479999999999999999999999999999999999988776 88999987 899999999999 89999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+|.. .+..+.+ .++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+.+||+.
T Consensus 409 l~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 409 LQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hcCCcc-ccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 998766 5544433 5789999999999999999999999999875 33367777765 4678999999999999999
Q ss_pred CCc
Q 001178 663 DGL 665 (1131)
Q Consensus 663 ~~~ 665 (1131)
++.
T Consensus 483 ~~~ 485 (537)
T KOG0274|consen 483 SGT 485 (537)
T ss_pred cCc
Confidence 884
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-26 Score=255.32 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=222.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
+-..|....+++|+.. +++++.+..+..|+...+..+. +.-..+........+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 3456777788888764 6677778888899876654321 11111111111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 425 GVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
|+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999976532 1234468899999999999998644 799999999999999 778888899999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
|.+++|++ ++.+|++++.|+.|++||++++.....+..|... +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 99999975 5689999999999999999998888777777653 45778999998998887655568999999998754
Q ss_pred -eeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 579 -LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 579 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
.+.....+....+....|+++++++++++ .|+.|++||+.+++.+...... ...++..++|.|.-
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 33333333333566678999999999887 5999999999999877765443 23367888888853
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=263.51 Aligned_cols=304 Identities=18% Similarity=0.271 Sum_probs=243.2
Q ss_pred CccceEEEEeecCCceEEEee--ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 766 SASKVARLLYTNSGIGILALW--SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+...|.++..+|+|..+++++ .|+.+++|+.+.-.... ..++..-.+.+. ....|.+.|.|+.|++
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------~~~~~~l~k~l~--~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------EEKNENLPKHLC--TMDDHDGSVNCVRFSP 79 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------hhhhcccchhhe--eeccccCceeEEEECC
Confidence 455689999999999999999 79999999875421110 112221011111 1126899999999999
Q ss_pred CCCEEEEEe-CCeEEEEECCC------------------ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 844 NDSYVMSAG-GGKVSLFNMMN------------------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
||++||+|+ |+.|.||.... ++++..+.+|...|..++|+| ++.+||+++.|++|.||+.
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcc
Confidence 999999999 57799998762 346788899999999999999 9999999999999999999
Q ss_pred ecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-
Q 001178 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~- 983 (1131)
.+.+.+..+++|.+.|-.+.|.|-|++|||-+.|++|++|++..+...+...-..........+..+.|||||.+|++.
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999999999999999999988866555544333333334678899999999999984
Q ss_pred ----eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc-----CCC------------EEEEEecCCcEEEEECCCCc
Q 001178 984 ----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC-----NSQ------------LIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 984 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~-----dg~------------~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
.-..+.|.+-.+.+.-..+.+| .+++.+++|+| ..+ .+|+|+.|++|.||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 2456889998888888888888 78999999998 111 68999999999999987666
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.+..+.... .. ..++++|+| ||..|+.+|.||+|.+..+.+.|
T Consensus 316 Pl~vi~~lf---------~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 316 PLFVIHNLF---------NK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred chhhhhhhh---------cC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 655443211 11 235799999 78999999999999999997554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=227.78 Aligned_cols=284 Identities=19% Similarity=0.299 Sum_probs=235.5
Q ss_pred ecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccC-CccEEEEEecCCeEEEEeCC
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYD 529 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~ 529 (1131)
.-|...|.++... ++ .++||+.||.+++||..|+.+..+.||.++|.++++.... ....+++++.|.++++|.++
T Consensus 102 ~~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred ccchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 3588999999888 55 7999999999999999999999999999999988876433 23469999999999999988
Q ss_pred CCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-------------------------CCeee
Q 001178 530 NVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-------------------------EGALK 580 (1131)
Q Consensus 530 ~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~ 580 (1131)
.+.... ...+|...|.++...++|.++++++. |..|.+|+.. ++.++
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~ 253 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL 253 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence 765443 33488899999999999999999998 9999999921 12345
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+.+|.. .|.++.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..+++||
T Consensus 254 vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 254 VTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred EEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecC
Confidence 56778776 899999987 6789999999999999999999888876544 689999999999999999999999999
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
..++.
T Consensus 329 PR~~~--------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 329 PRTGD--------------------------------------------------------------------------- 333 (423)
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 76651
Q ss_pred CcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSN 820 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~ 820 (1131)
+.+....|
T Consensus 334 ---------------------------gs~v~~s~--------------------------------------------- 341 (423)
T KOG0313|consen 334 ---------------------------GSVVSQSL--------------------------------------------- 341 (423)
T ss_pred ---------------------------CceeEEee---------------------------------------------
Confidence 00000000
Q ss_pred CcccccCCCCCCCCCeeEEEecCCCCE-EEEEe-CCeEEEEECCCce-eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 821 GLLMTNDVPENAEDVVPCVALSKNDSY-VMSAG-GGKVSLFNMMNFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 821 ~~~~~~~~~~~~~~~i~~l~~s~dg~~-la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.+|...|.++.++|...+ |++++ |+++++||+.+.+ .+..+.+|...|.++.|.. +.+|++|+.|.
T Consensus 342 ---------~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGGaD~ 410 (423)
T KOG0313|consen 342 ---------IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGGADN 410 (423)
T ss_pred ---------ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEeccCcc
Confidence 058888999999997765 55666 9999999999877 8999999999999999984 67899999999
Q ss_pred cEEEEEee
Q 001178 898 TIQIYNVR 905 (1131)
Q Consensus 898 ~I~iwd~~ 905 (1131)
+|+|+...
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99998643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=223.17 Aligned_cols=304 Identities=16% Similarity=0.227 Sum_probs=236.4
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccc----ccceeceeccCCCCCEEEEEE
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNC----SMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
..-.|++++.+.+|||||. ++|+|+.|..|+|.|++.. +... +.-++... .+++. .++-.|.+.|+++.|
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildverm--laks--~~~em~~~~~qa~hPvI-RTlYDH~devn~l~F 180 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERM--LAKS--KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDF 180 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhh--hhhc--chhhhccCCcccCCceE-eehhhccCcccceee
Confidence 3445999999999999998 8999999999999998721 0000 00011111 11222 257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe---
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--- 493 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--- 493 (1131)
+|....|++|+.|++|+++|.......+..+ ......+|.++.|+|.|. +++.|.+..++++|| .+-++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K-~~qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFK-VFQDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHH-HhhccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence 9999999999999999999997644333222 233566899999999999 899999999999999 555554332
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CC-CceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-AP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
..|.+.|+++.++ +.+++.++++.||.|++||--..+++..+. .| +..|.+..|..+|+++++.+. |..+++
T Consensus 258 ~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL 331 (430)
T KOG0640|consen 258 DQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL 331 (430)
T ss_pred cccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence 3689999999885 556899999999999999987777766543 34 347999999999999999987 899999
Q ss_pred EeCCCCeeeEEEecccCC----ceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 572 WNESEGALKRTYIGFRKK----SAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
|.+.+++.+..+.|.... --+...|+....+++.-. ..+.+.-||.++...+..+.. +|...+..+.-+|.+.-
T Consensus 332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~ 410 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA 410 (430)
T ss_pred eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence 999999999999865210 122245777777877754 367899999999877666543 55668999999999999
Q ss_pred EEEEECCCcEEEEec
Q 001178 647 LVVTTADQGIKILAN 661 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~ 661 (1131)
+++++.|...++|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 999999999999963
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=217.29 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=223.6
Q ss_pred EEEEEec--CCCcEEEEEc-----CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CC
Q 001178 351 VSMDFHP--FHHTLLVVGC-----GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GN 422 (1131)
Q Consensus 351 ~~~~fsp--dg~~llasg~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~ 422 (1131)
.++.||| +++..+|++. ..|.+.|-++..++.+. .+.-+ .-.+.+..++|+++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~--e~~s~---------------d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ--ECQSY---------------DTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE--EEEee---------------ecccceeEeeecCCCcc
Confidence 5778888 3443344432 25789999987544433 11111 23567999999996 45
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
.+++++.||++++||+.-. -.++..++.|...|.++.|++-.++ .++++|.|++|++|+ ..++.+.++.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 7888999999999995433 3455578899999999999997776 678889999999999 88889999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCCC-ee
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEG-AL 579 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~-~~ 579 (1131)
...|+|.. .+.++++|.|+++++||++.......+..|...+.++.|+.- .+.+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 99999864 479999999999999999998888889999999999999974 556667665 999999999874 45
Q ss_pred eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGI 656 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i 656 (1131)
+..+.+|.- .|..+.|||.. ..|++++.|-+++|||...+. .+.+...|.. -+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccce
Confidence 667766544 89999999976 588899999999999988543 3444444433 577888887 67899999999999
Q ss_pred EEEec
Q 001178 657 KILAN 661 (1131)
Q Consensus 657 ~iw~~ 661 (1131)
.||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-25 Score=215.38 Aligned_cols=281 Identities=15% Similarity=0.222 Sum_probs=227.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-.+.|+++.|+++|.. +++++.|.+++|||..+|++++ ++..+.-.|..++|-.....+.
T Consensus 13 ~~~~i~sl~fs~~G~~-litss~dDsl~LYd~~~g~~~~-------------------ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL-LITSSEDDSLRLYDSLSGKQVK-------------------TINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCE-EEEecCCCeEEEEEcCCCceee-------------------EeecccccccEEEEecCCceEE
Confidence 4679999999999985 7778889999999999999876 3455666788899988877777
Q ss_pred EEeC--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 426 VAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 426 s~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
.++. |.+|+.-++.+.+.++ -+.||...|++++.+|-+. .++|++.|++|++|| ...++...+.....++.
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~- 146 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA- 146 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce-
Confidence 7766 8899999999988665 6899999999999999988 799999999999999 55666665554444444
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEec---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYD---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+| ++.|-++|++...+.|++||++... +-..+. ......+.+.|+|||++++.+.. .+.+++.|.-+|
T Consensus 147 -Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 147 -AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred -eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 44 5666788888887899999998752 222332 23457899999999999999875 889999999999
Q ss_pred eeeEEEecccCCc--eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 578 ALKRTYIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 578 ~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
..+.++..+.+.. -...+|+||++++++|+.||+|.+|+++++..+..+... +..++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999998776532 245789999999999999999999999999999998875 34478999999976666654 557
Q ss_pred EEEEecC
Q 001178 656 IKILANA 662 (1131)
Q Consensus 656 i~iw~~~ 662 (1131)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7888654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-24 Score=225.93 Aligned_cols=625 Identities=15% Similarity=0.188 Sum_probs=344.6
Q ss_pred ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-------ecCCccCeEEEeecccCCccEEEEE
Q 001178 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-------FEGHEAPVYSVCPHQKENIHFIFST 517 (1131)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-------~~~h~~~v~~~~~~~~~~~~~l~s~ 517 (1131)
+....+.+|...|+++.|+|=... +|++||.|..|+||.+....-.. +.+..-.|.++.|++..|| |+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s 146 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILAS 146 (1012)
T ss_pred cccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEe
Confidence 344457899999999999995544 79999999999999943222222 2234457889999998875 4455
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEE
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQF 596 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~ 596 (1131)
+..|.+++||+.+.+....+.+|...|.++.|+.||..|++.+. +.+|+|||.+. ++.++...+|.+..-..+.|
T Consensus 147 ~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rdsRv~w 222 (1012)
T KOG1445|consen 147 GAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW 222 (1012)
T ss_pred ccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhheeee
Confidence 56799999999999999999999999999999999999999976 88999999875 67778888877655555778
Q ss_pred eCCCCEEEEEEcC----CcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhh
Q 001178 597 DTTRNRILAAGED----NQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRA 670 (1131)
Q Consensus 597 s~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~ 670 (1131)
..+-.+|++.+.+ ..+++||... +..++++...... .|.---|.||.++|+.++ .+.++..+.+.+....+..
T Consensus 223 ~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~ 301 (1012)
T KOG1445|consen 223 AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSH 301 (1012)
T ss_pred ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhh
Confidence 7665678776654 5689999876 4456666554332 355556889888776655 4677888877654322111
Q ss_pred hhccccccc-c-----ccccccccC----------------------ccceecccccccccccccCCCCCCccccccCCC
Q 001178 671 IETRAYETS-R-----ASTEMKVPG----------------------SAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 671 ~~~~~~~~~-~-----~~~~~~~~~----------------------~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
...+..+.. . ....+..++ .-....|..|+--...+ .......+..++|..
T Consensus 302 v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G-~~p~~~ageWlnG~N 380 (1012)
T KOG1445|consen 302 VFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRG-AEPGCTAGEWLNGTN 380 (1012)
T ss_pred hhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccC-CccCcCccceecCcc
Confidence 110000000 0 000000000 00000011000000000 000000000110000
Q ss_pred cc--------------------------------ccCCCCceeccccCCCCc----ceeeecccCC---cee-----EEE
Q 001178 723 SA--------------------------------ARGIEKPRNLEDISDKTK----PWELTEIVDP---LQC-----RVV 758 (1131)
Q Consensus 723 ~~--------------------------------~~~~~~~~~~~~~d~~v~----~w~~~~~~~~---~~~-----~~~ 758 (1131)
.. .....-..+-+...+.-. +=+....... ... +..
T Consensus 381 q~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~ 460 (1012)
T KOG1445|consen 381 QVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPY 460 (1012)
T ss_pred ccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhccccc
Confidence 00 000000000000000000 0000000000 000 000
Q ss_pred EcCC-----------CCCCccceEEEEeecCCceEEEee----ec--ceeeEEee----cCCCCCCCC--c-cceee---
Q 001178 759 AMPE-----------STDSASKVARLLYTNSGIGILALW----SN--GVQKLWKW----NRTEQNPSG--K-ATAAV--- 811 (1131)
Q Consensus 759 ~~~~-----------~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~iw~~----~~~~~~~~~--~-~~~~~--- 811 (1131)
..+. ..+....+..+. |....++--. .+ .+..+-.. ...++.+.+ . +.+..
T Consensus 461 E~~~g~~~~~~dad~~~g~sS~~s~~~--~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~ 538 (1012)
T KOG1445|consen 461 EKENGVHTPNADADSTQGNSSPISTIS--PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVP 538 (1012)
T ss_pred ccccCccCCCcccccccCCCCCccccC--CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCcccccccc
Confidence 0000 000000000000 0000000000 00 00000000 000000000 0 00000
Q ss_pred -------------eceeecCCCCccccc-----CCCC-CCCCCeeEEEecCCCCEEEE---EeCCeEEEEECCCc-eeE-
Q 001178 812 -------------APQHWQPSNGLLMTN-----DVPE-NAEDVVPCVALSKNDSYVMS---AGGGKVSLFNMMNF-KVM- 867 (1131)
Q Consensus 812 -------------~~~~w~~~~~~~~~~-----~~~~-~~~~~i~~l~~s~dg~~la~---~~dg~i~vwd~~~~-~~~- 867 (1131)
.+.-+.-..|..... .+.+ ...-+-.|=-|..+.+++|+ |+.|.|.||++..- ++.
T Consensus 539 ~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPD 618 (1012)
T KOG1445|consen 539 LSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPD 618 (1012)
T ss_pred ccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCc
Confidence 000011111110000 0000 00111112234445566664 34789999998642 221
Q ss_pred ---EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-------eeEEeecccccCeeEEEEccC-CCEEEEEe
Q 001178 868 ---TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-------EVKTKLKGHQKHITGLAFSTN-LNILVSSG 936 (1131)
Q Consensus 868 ---~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d-g~~l~s~~ 936 (1131)
-.+. ....|+.+.|.|-|...||++++||.|++|.+..+ ..-..+.+|...|+++.|+|- ...|++++
T Consensus 619 gv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 619 GVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh
Confidence 1111 34569999999999999999999999999999754 344678899999999999995 46899999
Q ss_pred CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 937 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
.|.+|++||+.+.+.... ..+ |...|..++|||||+.+++ +.||.++||+.++++....- +.......--.|
T Consensus 698 yd~Ti~lWDl~~~~~~~~-----l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi 770 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSR-----LVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARI 770 (1012)
T ss_pred ccceeeeeehhhhhhhhe-----ecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc-CCCCccCcceeE
Confidence 999999999998654222 222 3388999999999999997 78999999999876543221 111113444567
Q ss_pred EEccCCCEEEEEecC----CcEEEEECCCCce--eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1016 AYSCNSQLIYATFTD----GSIGVFDADSLRL--RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
.|.-||+++++.+.| ..|.+||.++... +.....-. ..+ ++--.+.++.+-+|++|-.|..|.
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--------aps---~LvP~YD~Ds~~lfltGKGD~~v~ 839 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--------APS---PLVPHYDYDSNVLFLTGKGDRFVN 839 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--------cCc---cccccccCCCceEEEecCCCceEE
Confidence 888999999988866 4699999876542 21111000 000 111234455566889999999999
Q ss_pred EEecCCCccc
Q 001178 1090 VIEPSETERK 1099 (1131)
Q Consensus 1090 iW~~~~~~~~ 1099 (1131)
+|.+..+++.
T Consensus 840 ~yEv~~esPy 849 (1012)
T KOG1445|consen 840 MYEVIYESPY 849 (1012)
T ss_pred EEEecCCCce
Confidence 9999887764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=237.85 Aligned_cols=293 Identities=19% Similarity=0.263 Sum_probs=227.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|+..|+++++.|.|.+ +++|+.|.+|++||......... .|+. +.......|.++.||+.|..|
T Consensus 165 hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr~-------------l~P~E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFRQ-------------LQPCETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhhc-------------cCcccccccceeeecCCCCeE
Confidence 57889999999999996 99999999999999976443321 1332 223445689999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccc---------eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C-CCceeEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLC---------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQF 493 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~---------~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~ 493 (1131)
++.+.....+|+|-.+-..+. -...-.||...++|.+|.|+.+. .++||+.|+++|||| . ..+.+..+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhheeEE
Confidence 988888899999976643221 12234799999999999999988 799999999999999 2 22333333
Q ss_pred c-----CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCc--eEEEEEEccCCCEEEEEeecC
Q 001178 494 E-----GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 494 ~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
. +..-+++.++|+ ++++.|++|+.||.|.+|+........ .-..|.. .|+++.||+||++|++-+.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-- 384 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-- 384 (641)
T ss_pred eeccCCCcccCceeeecC--CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC--
Confidence 2 334467788884 567899999999999999986544332 2344544 8999999999999999876
Q ss_pred CCCceEEEEeCCCCe-eeEEEecccC-CceEEEEEeCCCCEEEEEE------cCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 564 EGDSHLVEWNESEGA-LKRTYIGFRK-KSAGVVQFDTTRNRILAAG------EDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~-~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
|..+++||++..+ ++....+... ..-+.++|||+.+.|++|. ..|.+++||..+.+.++.+..... .|
T Consensus 385 --D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Sv 460 (641)
T KOG0772|consen 385 --DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SV 460 (641)
T ss_pred --CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eE
Confidence 9999999998753 4444433222 1345589999999999976 357899999999999988876643 78
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
..+.|+|.-+.+++|+.||.+++|--
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEEC
Confidence 89999999999999999999999754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=246.40 Aligned_cols=273 Identities=19% Similarity=0.328 Sum_probs=231.9
Q ss_pred CccccccCCCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccc
Q 001178 316 SVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSN 395 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 395 (1131)
..+.+++.-+..+..|+........+..++ ...|+++.|+++|+ .||+|..+|.|.|||..+.+.+.
T Consensus 187 s~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~----------- 253 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTR----------- 253 (484)
T ss_pred cCCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccc-----------
Confidence 334455555556778877776655555555 89999999999998 59999999999999998887765
Q ss_pred cccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 396 CSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 396 ~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.+.+ |...|.+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..+.|++|+. ++++|
T Consensus 254 --------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASG 319 (484)
T KOG0305|consen 254 --------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASG 319 (484)
T ss_pred --------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccC
Confidence 2455 99999999998 77899999999999999998775543 3789999999999999999 89999
Q ss_pred cCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE--ecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc
Q 001178 475 GDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST--AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 475 s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
+.|+.+.||| ....++..+..|.+.|.+++|+|... .+||+| +.|+.|++||..++..+.... .+..|.++.|++
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk 397 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSK 397 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcC
Confidence 9999999999 67888899999999999999999766 578887 479999999998776665543 456799999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
..+-|+++. +..+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 398 ~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTH--GYSENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEec--CCCCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 998777764 23467999999999999999999887 7999999999999999999999999998764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=215.92 Aligned_cols=267 Identities=15% Similarity=0.256 Sum_probs=215.7
Q ss_pred cCCCCCcccccCC-CcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccce
Q 001178 322 YPVPSQQATWSLD-DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMML 400 (1131)
Q Consensus 322 ~s~~~~~~~~~~~-~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1131)
+...|++.+..++ .......+.+.-.+.+..|+||++....+++++.||+++|||+..... +
T Consensus 34 l~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~----P------------- 96 (311)
T KOG0277|consen 34 LAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK----P------------- 96 (311)
T ss_pred cccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc----c-------------
Confidence 3445566666664 333445566778899999999999877899999999999999543221 1
Q ss_pred eceeccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 401 QAAIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 401 ~~~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
...++.|...|.++.|++ +++.+++++.|++|++|+..-++.+. ++.||...|...+|+|.... +++++|.|++
T Consensus 97 -i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~ 171 (311)
T KOG0277|consen 97 -IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGT 171 (311)
T ss_pred -hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCce
Confidence 125789999999999999 56678888999999999998776554 78999999999999998776 8999999999
Q ss_pred EEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCC-CE
Q 001178 480 IRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADG-SR 555 (1131)
Q Consensus 480 i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~ 555 (1131)
+++|| ..|+.+. +..|...+.++.|+... ...++||+.|+.|+.||+++.+ .+..+.+|+-.|..+.|||.. ..
T Consensus 172 l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMS-IEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeE-EEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 99999 5666666 88999999999998644 4799999999999999998865 455788899999999999965 56
Q ss_pred EEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCC-CCEEEEEEcCCcEEEEEc
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~ 617 (1131)
|++++. |-++++||...+. .+.++. ++...+..+.|++- +.++++++-|+.++||+.
T Consensus 250 LaSasY----DmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASY----DMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccc----cceEEecccccchhhhhhhh-ccceEEeccccccccCceeeecccccceeeecc
Confidence 778877 8999999988554 444444 44447777888874 468999999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=232.81 Aligned_cols=296 Identities=17% Similarity=0.252 Sum_probs=226.1
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
.|...|.++++.|.|.++++|+-|.++++||+......... ...+.......|.++.||+.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------------------fr~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------------------FRQLQPCETHQINSLQYSVT 225 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------------------hhccCcccccccceeeecCC
Confidence 37888999999999999999999999999998753222110 00122235678899999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEEEE------------eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-eE
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVMTTF------------MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VK 910 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~~~~------------~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-~~ 910 (1131)
|..|++.+ ....+|+|....+..... ++|...++|.+|+|.+...+.+++.||+++||++...+ .+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99888887 678999998876554433 47888999999999888899999999999999998543 22
Q ss_pred Eeec-----ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-Ee
Q 001178 911 TKLK-----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NH 984 (1131)
Q Consensus 911 ~~~~-----~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~ 984 (1131)
.+++ +..-+++.++|++||+++|.|..||.|.+|+..+........+.- .+.....+++|.||+||++|++ |.
T Consensus 306 qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred eEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccC
Confidence 3332 344578999999999999999999999999986654433333221 1222258999999999999998 77
Q ss_pred CCeEEEEeCCCcc-cceeeecCCCCCCCeEEEEEccCCCEEEEEe------cCCcEEEEECCCCceeeEecCCccccCCC
Q 001178 985 ETQLAIYDGSKME-CIRQWVPQDVLSSPISSAAYSCNSQLIYATF------TDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 985 d~~i~vwd~~~~~-~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
|+.+++||+++.+ ++..+.+.. ...+-+.++||||.++|++|. ..|.+++||..+...+.++....
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~------ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST------ 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC------
Confidence 9999999999754 333333321 145678899999999999998 35789999999999988887542
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEE-EecC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IEPS 1094 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i-W~~~ 1094 (1131)
..++.+.|||.- +.++.|+.||++++ ||..
T Consensus 458 ------aSvv~~~WhpkL-NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 458 ------ASVVRCLWHPKL-NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ------ceEEEEeecchh-hheeeecCCCceEEEECcc
Confidence 335579999954 67888888998876 5554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=211.94 Aligned_cols=290 Identities=13% Similarity=0.181 Sum_probs=231.6
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.++.|+++|..+++++.|.++++||...+.+. .. + ..+...+..++|....
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~----------------------~t-i-~skkyG~~~~~Fth~~ 68 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV----------------------KT-I-NSKKYGVDLACFTHHS 68 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee----------------------eE-e-ecccccccEEEEecCC
Confidence 5688999999999999999999999999986553322 11 0 1345678888887777
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 846 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
..++.++ |.+|+..++.+++.++.|.+|...|..++.+| .+..+++++.|++|++||++..++...+..- .-..
T Consensus 69 ~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi 145 (311)
T KOG1446|consen 69 NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPI 145 (311)
T ss_pred ceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecC--CCcc
Confidence 7666665 68899999999999999999999999999999 6788999999999999999988777666533 3345
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCccccee
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~ 1001 (1131)
.||.|+|-++|++.....|++||++.-.......+.... ........+.|||||++++.++ .+.+++.|.-+|..+..
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 789999999999988889999999986544443333332 2237889999999999988865 67799999999999988
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
+..+.....---+.+|+||++++++|+.||+|.+|++++|.....+.+....+ + .++.|.| .+..-
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~---------~--~~~~fnP---~~~mf 290 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP---------V--SCVRFNP---RYAMF 290 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC---------c--cccccCC---ceeee
Confidence 88775434333678999999999999999999999999999999988753211 2 2577888 45666
Q ss_pred EecCCcEEEEecCCCc
Q 001178 1082 GLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~~~~~ 1097 (1131)
.+.+..+.+|=+...+
T Consensus 291 ~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 291 VSASSNLVFWLPDEDA 306 (311)
T ss_pred eecCceEEEEeccccc
Confidence 6677889999887555
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=199.00 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=228.3
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.+++|.|.|...+++++..++++-....-.....+...+...+ .+...-.+.|.+.|.|.+|||+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp---------~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPP---------SVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCC---------eEEeeeccccCccEEEEEecCcc
Confidence 678899999999999999999998888754322111000100000000 00111123689999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCcee-----EEEEeCCCCCeeEEEEeCC---CCcEEEEEe-CCCcEEEEEeecceeEEeecc
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~ 915 (1131)
++|++|+ |.+|++..+....+ -.++.-|.+.|..++|..+ ++.+|++++ .|..|++-|..+|+....+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 78888876553322 2356678999999999752 466777765 467788888889999999999
Q ss_pred cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC-CCCCceEEEEcCCCcEEEEEe-CCeEEEEeC
Q 001178 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLVNH-ETQLAIYDG 993 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~ 993 (1131)
|.+.|.++- +=+|-.+++|+.|.+|++||+.-..+....-.....+. ..+.|.+++..|.|++|++|. |....+||+
T Consensus 182 htghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 999998873 33588999999999999999987655444332222222 236899999999999999986 888999999
Q ss_pred CCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcC
Q 001178 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHP 1073 (1131)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p 1073 (1131)
+.++.++.+.+| +..|.++.|||...||++++.|..|++-|++. .+...+..-. .. .+.-..+.+.|+|
T Consensus 261 rg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~v-v~------ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 261 RGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMV-VA------EHKDKAIQCRWHP 329 (350)
T ss_pred eCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEE-EE------eccCceEEEEecC
Confidence 999999999888 89999999999999999999999999999863 3333222111 11 1123456799999
Q ss_pred CCCCeEEEEecCCcEEEEecC
Q 001178 1074 QEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1074 ~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
++ --+++.+.|.++-+|-++
T Consensus 330 ~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QD-FSFISSSADKTATLWALN 349 (350)
T ss_pred cc-ceeeeccCcceEEEeccC
Confidence 75 578899999999999764
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=209.07 Aligned_cols=247 Identities=16% Similarity=0.220 Sum_probs=209.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|...|.+++|+.+|..||+|+.|+++.||+++..+.. ......+|.+.|..++|.|.... .+++++.|++|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 5689999999999999999999999999999999987533 33457899999999999998776 799999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++.......+.+.. .| +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999888765555553 44 46678999999999999999987666554332 23477788887777666553
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+.|.|.|.....-+++..+..|.. ...|+.|+|+|+++++|+.|-.+.+||+...-+++.+....- +|..++|+-|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEeccC
Confidence 278999999999999999999875 677899999999999999999999999999888888776655 8999999999
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 001178 644 GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|++||++++|..|-|=++.+|
T Consensus 243 g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cceeeccCccceEEeEecccC
Confidence 999999999999998888777
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=240.20 Aligned_cols=278 Identities=16% Similarity=0.268 Sum_probs=235.2
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
.+-++||..+ +||+|. ...|++|+..+++... ...-+...|+++.|+++|.+||+|..
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s~~v~~-------------------l~~~~~~~vtSv~ws~~G~~LavG~~ 237 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTE-------------------LCSFGEELVTSVKWSPDGSHLAVGTS 237 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCCCceEE-------------------eEecCCCceEEEEECCCCCEEEEeec
Confidence 3456778555 578775 4589999999988543 12233789999999999999999999
Q ss_pred CCeEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee-EEecCCccCeEEEeec
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL-FQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~~~~h~~~v~~~~~~ 506 (1131)
+|.|.|||....+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+.. ..+.+|...|+.+.|+
T Consensus 238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 9999999998876554 5667 99999999998 34 689999999999999 444443 3488999999999995
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.++.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+ +..|++|++||..+|+.+....
T Consensus 311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG--Gs~D~~i~fwn~~~g~~i~~vd- 385 (484)
T KOG0305|consen 311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG--GSADRCIKFWNTNTGARIDSVD- 385 (484)
T ss_pred --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC--CCcccEEEEEEcCCCcEecccc-
Confidence 5668999999999999999988899999999999999999999 456677764 4569999999999999998877
Q ss_pred ccCCceEEEEEeCCCCEEEE--EEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 586 FRKKSAGVVQFDTTRNRILA--AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+..|..+.|++..+-|++ |..++.|.||++.+.+.+..+..|.. .|..++++|||..+++|+.|.++++|++-+
T Consensus 386 -tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 -TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 3447999999999876766 55678999999999999888887765 799999999999999999999999999866
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=247.22 Aligned_cols=274 Identities=18% Similarity=0.233 Sum_probs=212.9
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC-----------------------------CCCcccee-----
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-----------------------------PSGKATAA----- 810 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~~~----- 810 (1131)
.|.+.|.++.||+||++|+++|.|+.|+||.+...+.. ..+.....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 59999999999999999999999999999998762110 00000000
Q ss_pred eeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 811 VAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
....+.......+...++ ..+|...|..+.||.++- |++++ |.+|+||++...+|++.|. |...|+|++|+|.|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000111111111111111 127999999999998765 55555 9999999999999999997 889999999999999
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC--CC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK--LP 965 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~--~~ 965 (1131)
+++++|+-||.|+||++...+.+.-..-+ .-|++++|+|||++.+.|+.+|.+++|+....+......+...... ..
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988766554444 7899999999999999999999999999998776665555443322 12
Q ss_pred CCceEEEEcCCCc--EEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 966 VGETRVQFHSDQV--RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 966 ~~v~~v~~s~d~~--~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
..|+.++|.|... .|+++.|..|||||..+..++..+.+.....+. ....|+.||++|+++++|..|++|+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 3699999987655 888889999999999999999999987664444 466899999999999999999999985443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=226.82 Aligned_cols=296 Identities=15% Similarity=0.200 Sum_probs=233.4
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccc----ccccceeceeccCCCCCEEEEEEcC
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS----NCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..|.-+|+||+++||+++ .++++.+|+|.=|++.+|+.... +|.-. .-..+.+..- ++|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 358999999999999996 89999999999999999986521 11110 0111111111 48999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
||+|||+|+.|..|.||+.++.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.+|++
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999987655 6899999999999987666 689999999999999 66777888999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|.++... .-.+.+-+|+.|+++++|++. ......+.++...+.+++|-.+. .+++|+. +|.|.+|++...+
T Consensus 288 ~v~~IdaL--~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDAL--SRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSLLKKK 359 (479)
T ss_pred ceeeechh--cccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeeecccC
Confidence 99999764 333566667799999999994 45555677788889999998655 5677775 9999999999988
Q ss_pred eeEEEecccC-----------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCCCCCcceEEEcCC
Q 001178 579 LKRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 579 ~~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
++.+....|+ ..|++++..|..+++++|+.+|.|++|-+..+ .++..+...+ -|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~G---fVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVG---FVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccccc---EEEEEEEccC
Confidence 8877653322 16788999999999999999999999998877 3445555433 6899999999
Q ss_pred CCEEEEE-ECCCcEEEEec
Q 001178 644 GNLLVVT-TADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~-~~dg~i~iw~~ 661 (1131)
|+.+++| +....+--|-.
T Consensus 437 gk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 437 GKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred CCEEEEecccccccceeeE
Confidence 9966655 44444444543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=230.80 Aligned_cols=286 Identities=15% Similarity=0.245 Sum_probs=232.4
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
....+.|.+++|+|...+=++....-.+.+|+....... .. + ......+.++.|-.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~----------------------k~-~-srFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR----------------------KT-F-SRFKDVVYSVDFRS 78 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhh----------------------hh-H-HhhccceeEEEeec
Confidence 336688999999998776666666667777764331111 00 0 13577899999999
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
||+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999999 7999999988888889999999999999999999999999999999999999999887789999999999
Q ss_pred EEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc-cce
Q 001178 923 LAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME-CIR 1000 (1131)
Q Consensus 923 l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~-~~~ 1000 (1131)
.+|+|- +..++|||-||.|++||+..... ..... .++.+|..+.+-|.|..++++....++|||+.+|. .+.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~----~v~el--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTS----RVVEL--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCc----eeEEe--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehh
Confidence 999996 45899999999999999988431 11222 23378999999999999999999999999999554 444
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
....| ...|+|+++..++..|++|+-|+.|++||+.+.+.+..+.. .++|. ++.-+| ++..++
T Consensus 233 ~~~~H---~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvL--siavs~-dd~t~v 295 (487)
T KOG0310|consen 233 SMFNH---NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVL--SIAVSP-DDQTVV 295 (487)
T ss_pred hhhcc---cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------cccee--eEEecC-CCceEE
Confidence 44434 88999999999999999999999999999998888887764 23454 455566 668999
Q ss_pred EEecCCcEEEEecCCC
Q 001178 1081 VGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~~~~ 1096 (1131)
.|..||.+.+=+....
T Consensus 296 iGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREVK 311 (487)
T ss_pred Eecccceeeeehhhcc
Confidence 9999998877655433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=210.66 Aligned_cols=253 Identities=17% Similarity=0.232 Sum_probs=193.5
Q ss_pred ceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 769 KVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 769 ~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
..+.++|+||-+.+++... ...+++|.+...+. |...-. ..-|| ...+.+.|.-.+-.+-....+++
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D-------~~~f~~kh~v~~i~iGiA~~~k~ 201 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHID-------NLEFERKHQVDIINIGIAGNAKY 201 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccc-------ccccchhcccceEEEeecCCceE
Confidence 3457788888776665554 56788887654322 211100 01122 11234457777888888899999
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee---cc-----eeEEeeccccc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR---VD-----EVKTKLKGHQK 918 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~---~~-----~~~~~~~~h~~ 918 (1131)
|++++ |.+|.+|++. |+.+..+......-...+.|| +|++||+++.--.|++|..- .| +.+..++||..
T Consensus 202 imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred EEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 99999 7889999998 899999887777788899999 99999999999999999874 22 34567899999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-----IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-----~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
.|.+++||++...++|++.||++++||++-.-.....+ ...+..........+.++|.|+.|+++....+.+|..
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~s 359 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFAS 359 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEc
Confidence 99999999999999999999999999987522111111 1122222335566999999999999999999999999
Q ss_pred CCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 994 SKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
++|+....+... |...|++++|++||+++++++ |..++++.-
T Consensus 360 e~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 360 EDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 999888777644 489999999999999999998 889998863
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=237.83 Aligned_cols=292 Identities=21% Similarity=0.285 Sum_probs=235.5
Q ss_pred CCCcEE---EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 346 QGSSVV---SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~---~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
|...|. ++..+..+.++|.+|+.||.|++|+...-......+ -...+..|.++|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence 444455 455554444469999999999999987543321111 0124778999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-ecCCCceEEEEEcCCCcEEEEe-CCC--cee--------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SYPNKQLCIVTCGDDKLIRVWD-LSG--RKL-------- 490 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~-------- 490 (1131)
.|++++.|-+|++|+...+. .....++..|...|.|+++ .++.. ++||||-|+.|.+|| .+| +.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 1223367889999999999 66666 899999999999999 444 222
Q ss_pred EEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 491 FQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 491 ~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
..+. |+..+|.+++.+ +.|..|++|+..+.+++||.++...+..+.+|...|..+..++||+.+++++. |++|
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI 237 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence 2233 788899999875 45579999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEE
Q 001178 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~ 649 (1131)
++||+...+++.++..|.. .+.++..+|+-.++++|+.||.|+.-|+.+......+-.+.+ +|..+..+.+.+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCcee
Confidence 9999999999999999888 599999999999999999999999999988543333333333 6777777765555677
Q ss_pred EECCCcEEEEecC
Q 001178 650 TTADQGIKILANA 662 (1131)
Q Consensus 650 ~~~dg~i~iw~~~ 662 (1131)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 8889999999754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=209.15 Aligned_cols=241 Identities=20% Similarity=0.263 Sum_probs=204.5
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc--EEEEEeCCCcEEEEEeecc
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~I~iwd~~~~ 907 (1131)
.|...++++|. +|.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ +.. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 69999999998 679999999 89999999999999999999999999999998 543 7889999999999999999
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCe
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQ 987 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~ 987 (1131)
+++..+++|.+.|+.++.+|.|++-++.+.|+.+++||+-.|+......+. ...+.+.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998754333322 3345699999999999999999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccE
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
|-+|.+.+......+... ..+.++.|. ++.+|++|+.|+.|.+||-+++...+.+.. |...|..+
T Consensus 191 i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----------H~~RVK~i 255 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA----------HENRVKDI 255 (362)
T ss_pred EEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec----------chhheeee
Confidence 999999988777666543 457777775 677899999999999999998777776654 34445544
Q ss_pred EEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1068 VVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1068 ~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..--.| +..+|+|+|.||.|++||+....
T Consensus 256 ~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 256 ASYTNP-EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEEecC-CceEEEEeccCceEEEEEccccc
Confidence 433344 66899999999999999998663
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=240.50 Aligned_cols=255 Identities=12% Similarity=0.114 Sum_probs=192.2
Q ss_pred EcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCc-
Q 001178 366 GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSND- 443 (1131)
Q Consensus 366 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~- 443 (1131)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4556777888765433221 47799999999999996 78999999999999999986432
Q ss_pred c----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEe
Q 001178 444 L----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 444 ~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999874 568999999999999 6777776665 667899999965 568999999
Q ss_pred cCCeEEEEeCCCCceeEEecCCCceEEE-----EEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCC-ce
Q 001178 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTT-----MLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKK-SA 591 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~v 591 (1131)
.|+.|++||++++.....+..|.+.+.. ..|++++.++++++.++..++.|++||++. ++++..+...... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888764432 345689999999887444456899999985 5566555432221 22
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
......+++.++++|+.|+.|++|++..+. +..+.......++..++|.|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 223334557888999999999999998764 3334333344577889999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=239.18 Aligned_cols=236 Identities=17% Similarity=0.251 Sum_probs=204.0
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCcc---ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC--ceeEE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG--RKLFQ 492 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~--~~~~~ 492 (1131)
|++++|.+|+.||.|++|+....... .....+..|...|++++..-+++ .|+|+|.|-+|++|+ ..+ -++.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCcchhHhh
Confidence 46778999999999999998654321 11346788999999999999998 699999999999999 444 57788
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----------Eec-CCCceEEEEEEccCCCEEEEEee
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYD-APGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~-~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+..|...|.|+++. ..+...+++|+-|+.|.+||+.++.... .+. ++...|.+++.++.|..+++|+.
T Consensus 113 ir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999974 3455799999999999999999763311 122 56668999999999999999887
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
.+.|++||.++++.+..+.+|.. .|.++..++||..+++++.||+|++||+...+++.++..|.. .|.++..+
T Consensus 192 ----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~ 264 (735)
T KOG0308|consen 192 ----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSS 264 (735)
T ss_pred ----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeC
Confidence 88999999999999999999887 899999999999999999999999999999999999888766 69999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+-..+++|+.||.|..=|+.+.
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCcceEEecCCCCcEEecccCCc
Confidence 99999999999999998887764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-25 Score=224.03 Aligned_cols=252 Identities=20% Similarity=0.256 Sum_probs=213.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee-------------eee--ecCcCCeeEEEEecCCCc
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS-------------LEI--DAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-------------~~~--~~h~~~V~~l~~s~d~~~ 468 (1131)
....|.-+|.||+++||+++..+++.+++|.=|++.+++..+-. ... .+|...+.+++.++||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 46689999999999999999999999999999999888743100 011 37889999999999999
Q ss_pred eEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 469 LCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
+|++|+.|+.|.||| .+.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 899999999999999 9999999999999999999996544 579999999999999999988888899999999999
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
....-++.+-+++. |.++++|++.. .....|.++.. .+.|++|-. ..++++|+++|.|.+|++...+++.+..
T Consensus 293 daL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 293 DALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred chhcccceEEeccc----cceeEEEeccc-cceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 99888887777766 99999999943 34445666544 789999875 4689999999999999999998887654
Q ss_pred ccCC----------CCCcceEEEcCCCCEEEEEECCCcEEEEecCCCch
Q 001178 628 AEGG----------LPSLPRLRFNKEGNLLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 628 ~~~~----------~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
...+ ...|++++..|...++++|+.+|.|++|.+.++.+
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 3211 11578999999999999999999999999988744
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-23 Score=228.80 Aligned_cols=504 Identities=15% Similarity=0.209 Sum_probs=316.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCc-eEEEEEcCCCcEEEEe-CCCcee
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ-LCIVTCGDDKLIRVWD-LSGRKL 490 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~-~~l~s~s~d~~i~iwd-~~~~~~ 490 (1131)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||.|++|| ..+..+
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 34569999999987764 589999999998876 68999999999999987663 3788999999999999 788887
Q ss_pred EEecCCccCeEEEeecc------------cCCccEEEEEecC--CeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCE
Q 001178 491 FQFEGHEAPVYSVCPHQ------------KENIHFIFSTAVD--GKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
.++..+. ++..+.+.+ ..+-..+.+.+.+ +.++-+.+.+.... ..+......-.++.+++.|.+
T Consensus 96 kt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 7776432 233322211 1111111111111 11111111110000 000001111357888888888
Q ss_pred EEEEeecCCCCceEEEEeCCCCeee---EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEEEeccC
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALK---RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTSTEAEG 630 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 630 (1131)
.+.+. +..+.+|+...+... +....+|...+++.+++|++++++++..||.|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 77765 667899988775411 112233433578999999999999999999999996443 33333333445
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1131)
|...|.+++|+++|.+|++|+..|.+.+|.+.++.+. |-|.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq----------------------------fLPR----------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ----------------------------FLPR----------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc----------------------------cccc-----------
Confidence 5558999999999999999999999999998776210 1111
Q ss_pred CCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecce
Q 001178 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1131)
Q Consensus 711 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1131)
T Consensus 291 -------------------------------------------------------------------------------- 290 (792)
T KOG1963|consen 291 -------------------------------------------------------------------------------- 290 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEE
Q 001178 791 QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT 869 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~ 869 (1131)
-..+|..+.+|||+.+.+... |+.|.+....+.+...+
T Consensus 291 -----------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 291 -----------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred -----------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 233444455555555444443 55555554444333333
Q ss_pred EeC-----------CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-----------ccccCeeEEEEcc
Q 001178 870 FMS-----------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----------GHQKHITGLAFST 927 (1131)
Q Consensus 870 ~~~-----------~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-----------~h~~~V~~l~~s~ 927 (1131)
+.+ ..+-.+.++++| ..+.++..+..|.|++||+-+.+.+..+. .+.-.|++++.+-
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred ccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 221 123466788888 66777888899999999998876665543 2334588899999
Q ss_pred CCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc-EEE-EEeCCeEEEEeCCC
Q 001178 928 NLNILVSSGS--------DA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV-RLL-VNHETQLAIYDGSK 995 (1131)
Q Consensus 928 dg~~l~s~~~--------Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~-~~~d~~i~vwd~~~ 995 (1131)
.|.+++|.-. || .+++|-.............+...|....+..+.+++... .++ ++.||.++||-...
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 9999998743 33 578998877655444433333333333444444444333 444 45799999998843
Q ss_pred ccccee-------eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccE
Q 001178 996 MECIRQ-------WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 996 ~~~~~~-------~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
.+.+.. ...+..|..++++.+||.||..|+++. |++|.+||..+ ..+.+... ....+. .+
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~-~~~Itiwd~~~~~~l~~~~~-~~~~~~-----~~----- 556 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF-DDTITIWDYDTKNELLCTEG-SRNWPI-----AE----- 556 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec-CCEEEEecCCChhhhhcccc-ccccch-----Hh-----
Confidence 222111 111223588999999999998777665 89999999998 44443332 221111 11
Q ss_pred EEEEcCCC-CCeEEEEecCCcEEEEecCCCcccc
Q 001178 1068 VVTSHPQE-PNQLAVGLTDGSVKVIEPSETERKW 1100 (1131)
Q Consensus 1068 ~v~~~p~~-~~~l~s~~~Dg~v~iW~~~~~~~~w 1100 (1131)
.+|..+. ....+....-+++.+|++....-.|
T Consensus 557 -~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 557 -LLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred -HhhhcccccccceeeccCceEehHhhhhhheec
Confidence 1221111 1234445557789999999999889
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=233.74 Aligned_cols=281 Identities=16% Similarity=0.305 Sum_probs=237.3
Q ss_pred eeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE-EEE
Q 001178 340 VACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR-VAW 417 (1131)
Q Consensus 340 ~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~ 417 (1131)
+.+.++ |.+.|..+++.+.. .+++||.||++++|+-..++.+.. +.+.+|.+.|.+ ++|
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y 66 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY 66 (745)
T ss_pred eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence 344554 99999999998877 488999999999999876665532 246688888888 888
Q ss_pred cC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC
Q 001178 418 SP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH 496 (1131)
Q Consensus 418 sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h 496 (1131)
-+ |+-+|++|+.|.+|.+|...+...+. .+.+|...|.++....++. ++|||.|.++++|- .+++...+.+|
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH 139 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGH 139 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCc
Confidence 86 55579999999999999999877554 7899999999999888876 89999999999997 45566679999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
+..|++++..+.. .++|||.|++|++|.- ++....+.+|...|+.+++-+++. +++|+. ||.|+.|++ +
T Consensus 140 ~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-D 208 (745)
T ss_pred chheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-c
Confidence 9999999876543 8999999999999964 567778899999999999998876 456665 999999998 7
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
|..+..+.+|.+ -+.++....++..++++++|++++||+.. ++.+.+..++. .|.++.+-++|. +++|+.||.|
T Consensus 209 ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~V 282 (745)
T KOG0301|consen 209 GEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRV 282 (745)
T ss_pred Cceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceE
Confidence 889999999877 78899988888999999999999999976 77777777654 688898888886 6789999999
Q ss_pred EEEecCC
Q 001178 657 KILANAD 663 (1131)
Q Consensus 657 ~iw~~~~ 663 (1131)
+||....
T Consensus 283 rVfT~~k 289 (745)
T KOG0301|consen 283 RVFTVDK 289 (745)
T ss_pred EEEEecc
Confidence 9998763
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=242.57 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=199.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc----------ceeeeeecCcCCeeEEEEec-CCCceEEEEEcC
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL----------CQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGD 476 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~ 476 (1131)
|-..|.....++|+..+++++.+.....|+..++..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3455667777788777777777777777876544321 11224789999999999999 777 7999999
Q ss_pred CCcEEEEe-CCC-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEE
Q 001178 477 DKLIRVWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1131)
Q Consensus 477 d~~i~iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1131)
|++|++|| .++ ..+..+.+|...|.+++|+|.. ..+|++++.|++|++||++++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 433 3567889999999999998754 36899999999999999999888888888999999999
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCe-EE
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVN-ML 623 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 623 (1131)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999986 999999999999999898887765556678888888887755 47899999998754 33
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCC
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 664 (1131)
.....+ ....+....|+++++++++++ .|+.|++||+.++
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 222455677899999999887 5999999999876
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=217.29 Aligned_cols=284 Identities=17% Similarity=0.200 Sum_probs=243.1
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++...|... .+.+|+.|.++.++|..+++.+. +++||...|+.+.|+|+...+++
T Consensus 219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~ 278 (506)
T KOG0289|consen 219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVIT 278 (506)
T ss_pred CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheee
Confidence 34788888888743 68999999999999999988876 68899999999999999999999
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSV 503 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~ 503 (1131)
++.|..|+||......+.. ....|..+|+.+...|.|. ||++++.|++..+.| .+|..+..... ..-.+++.
T Consensus 279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~ 353 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA 353 (506)
T ss_pred cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence 9999999999998766433 4678999999999999999 899999999999999 88888776653 23457888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+||| ||.++.+|+.||.|++||+.+......|.+|.++|..+.|+.+|-+|++++. |+.|++||++..+..+++
T Consensus 354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence 8875 6689999999999999999999999999999999999999999999999986 888999999998888888
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.......+.++.|.+.|.+++.++.|=.|++++-.+.+.......+.+.+..+.+.|....+++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 876666799999999999999998877777777555443333333344446789999999999999999999888754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=207.88 Aligned_cols=202 Identities=19% Similarity=0.294 Sum_probs=157.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++++|.+.|++++||.||++||+++.|++|++|+++.-. +++...++ +.-+.++|+||-+. .++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEccCC
Confidence 689999999999999999999999999999999997622 22222221 23688999999986 677777778
Q ss_pred cEEEEeC----CCceeEE---------ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 479 LIRVWDL----SGRKLFQ---------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd~----~~~~~~~---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
++++|.. +|..... -+.|...+..+-+ .+++.+|++++.|..|.+|+++ ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 8999972 2332211 1245556665554 4677899999999999999998 667767776666677
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCC---CC-----eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNES---EG-----ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..+.||+|+++++++. ..-+.+|.+- .| ..+..+.+|.. .|...+|+++...+++.+.||++++||.
T Consensus 233 ~aavSP~GRFia~~gF----TpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGF----TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ceeeCCCCcEEEEecC----CCCceEEEEEeccCcchhhhhhhheeccchh-heeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8899999999999987 5568999852 22 23456778766 8999999999999999999999999997
Q ss_pred C
Q 001178 618 D 618 (1131)
Q Consensus 618 ~ 618 (1131)
+
T Consensus 308 d 308 (420)
T KOG2096|consen 308 D 308 (420)
T ss_pred c
Confidence 5
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=247.77 Aligned_cols=259 Identities=20% Similarity=0.327 Sum_probs=219.3
Q ss_pred cccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccC
Q 001178 328 QATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407 (1131)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1131)
+..|+............+|.+.|++++|..-+ .+|++|+.|.+++|||+.+|++.. ++.+
T Consensus 230 l~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~-------------------~l~g 289 (537)
T KOG0274|consen 230 LHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTH-------------------SLQG 289 (537)
T ss_pred eEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEE-------------------EecC
Confidence 44555544333333345799999999999844 479999999999999999999987 5789
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS 486 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~ 486 (1131)
|...|.++..- +.++++|+.|.+|++|++.++.++. .+.+|.++|.++... +. ++++|+.|++|++|| .+
T Consensus 290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~---l~~~h~~~V~~v~~~--~~--~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN---LLRGHTGPVNCVQLD--EP--LLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE---EeccccccEEEEEec--CC--EEEEEecCceEEEEEhhh
Confidence 99999998875 4578889999999999999988775 566799999999998 55 899999999999999 99
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
++++..+.+|...|.++.+... ..+++|+.|++|++||+++. ++...+..|..-+..+. ..+++|++++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~a---- 431 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSA---- 431 (537)
T ss_pred ceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccc----
Confidence 9999999999999999976432 68999999999999999999 88888888888775444 45788999887
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
|+.|++||..++++++.+.+.+...+.++++. ...+++++.||.+++||+.++.....+
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 89999999999999999998543477777765 478999999999999999999887765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-26 Score=223.21 Aligned_cols=282 Identities=13% Similarity=0.194 Sum_probs=228.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++.. .+..|.+.|..+++.. ..+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~~ 122 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TSF 122 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cce
Confidence 5999999999999874469999999999999999888776 5789999999999987 678
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++++.|++|+.|.++.. ...++.+ ...+..+.-+..+. .++|||. .|-||| ....++..+.--...|.++
T Consensus 123 ~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred EEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 89999999999998873 2223433 34567777776666 7899986 589999 7788888888778889999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~ 582 (1131)
.|+|... .+|++++.|+.|.+||++....+..... ...-+.++|+|.+-.++++.. |..++.+|++.- .++..
T Consensus 194 kfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 194 KFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred ecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccchh
Confidence 9998765 6888888999999999998877765432 234578999996666666654 999999999864 45566
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+|-. .|..+.|+|.|+-+++|+.|.+|+||..+.+........ .....|.++.|+-|.+++++|++|+.|++|...
T Consensus 268 ~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 268 HKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 666554 889999999999999999999999999987754333221 122368999999999999999999999999875
Q ss_pred CC
Q 001178 663 DG 664 (1131)
Q Consensus 663 ~~ 664 (1131)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 43
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=207.16 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=195.0
Q ss_pred ccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
-....+.|.+++||| ...++++++.|++||+|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 446788999999999 555677899999999999987432322 34677999999999999998 79999999999999
Q ss_pred eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
|+....+..+..|.++|.++.|.+......|++||.|++|++||.+.......+..... +.++..- ..+++++..
T Consensus 100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata-- 174 (347)
T KOG0647|consen 100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA-- 174 (347)
T ss_pred EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec--
Confidence 94444777888899999999998877777999999999999999998888877765543 4444333 234444443
Q ss_pred CCCceEEEEeCCCCeee-EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCC-------CC
Q 001178 564 EGDSHLVEWNESEGALK-RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGG-------LP 633 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~ 633 (1131)
+..|.+|+++++... +.....-...+.+++..++....+.|+-+|.+-|..++.+ +.-..++.|.. .-
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 788999999776433 2233333346888998899888899999999999998876 33334444432 23
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5788999999999999999999999996544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=226.45 Aligned_cols=247 Identities=19% Similarity=0.283 Sum_probs=209.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..++|+++.|.++++ .+++.+.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 366899999999999999999999999999999998876 334447888889999999999999 79999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+ -+.+...++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 7888899999999999999986544 349999999999999998865554332 33345556555 445556554
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC--CCCcceEEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRLRF 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~v~~ 640 (1131)
|++|+.||.+++.+......+. .|+++..++++..+++.+.|.++.+.|+.+.+....+...+. ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999998888643 799999999999999999999999999999988888765532 225788999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
||++.|+++|+.||.|+||++.++
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc
Confidence 999999999999999999999877
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=215.99 Aligned_cols=240 Identities=17% Similarity=0.298 Sum_probs=198.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
|...|+.+.++++...+++++.|..|++|......... ....|..+|+.+...|.|
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~------------------------~~~~h~~~V~~ls~h~tg 315 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT------------------------SSRPHEEPVTGLSLHPTG 315 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCcc------------------------ccccccccceeeeeccCC
Confidence 67778889999999999999999999999865532111 112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
+||++++ |+++.+.|+.++.++..... ..-.+++.+|+| ||.++++|+.||.|+|||+.++..+..|.+|.++|..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999 79999999999998877654 334589999999 9999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCC--Ccccc
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGS--KMECI 999 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~--~~~~~ 999 (1131)
++|+.+|-+||++..|+.|++||+...+......+. .. .++.++.|.+.|.+|+.+ .+=.|++++-. +..++
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeecc--cc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 999999999999999999999999986643333322 11 368999999999999986 23344444422 45555
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 1000 ~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
..+..+ .+..+.+.|..+.+++++++.|..++++.+
T Consensus 470 ~~~~~~---sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADH---SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhc---ccccceeeecccceEEeeccchhheEEeec
Confidence 555554 778999999999999999999999888764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=210.03 Aligned_cols=296 Identities=13% Similarity=0.187 Sum_probs=240.6
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
-++++.+ +|.+.|+.++...... ++.+++.|.+.+||.+++|+++. .+.||.+.|+|++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEE
Confidence 3445555 5999999999877655 89999999999999999999987 4789999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEe------cC--------C-----------------------CccceeeeeecCcCCeeE
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTY------QG--------S-----------------------NDLCQSLEIDAHVGGVND 459 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~------~~--------~-----------------------~~~~~~~~~~~h~~~V~~ 459 (1131)
|++.+.++++++.|++..||.. .. + ..-.+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 11 0 001123568899999999
Q ss_pred EEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEe
Q 001178 460 LAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDY 537 (1131)
Q Consensus 460 l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~ 537 (1131)
..|...|+ .+++++.|++..+|| .+|..+..+.||....+.++-+|.. +++++.+.|.+.++||++..- ....|
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999999 699999999999999 9999999999999999999887655 789999999999999998543 34478
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
.+|...|+++.|..+.+ +++++. |.+|++||+++.+ ++.++. .+.+++.++++..++.++.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999999998765 566664 8999999998754 555665 344788899998888888888999999999
Q ss_pred cCCCeEEEEE--eccCCCCCcceEEEcCCC--CEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVNMLTST--EAEGGLPSLPRLRFNKEG--NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~~~~~~--~~~~~~~~i~~v~~sp~~--~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++........ ...+|..-|+|++|..+. .-|++++.|..+.-|.+...
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9765433222 233455578999997653 34788899999999988654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=204.43 Aligned_cols=268 Identities=18% Similarity=0.277 Sum_probs=213.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|++|.|+|.+.. |++++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4679999999999886 5556799999999998875442 225789999999997 45788
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC-ceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG-RKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~h~~~v~~~~ 504 (1131)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||..+ .....+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999998755 3678999999999998776 799999999999999433 3333333 344788886
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC----e
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG----A 578 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~----~ 578 (1131)
. .++.|+.|+.|..|.+||+++......... -.-.+.++++-|++.-.++++. +|+|.+=..... .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 4 346899999999999999998776653322 2337899999998887888776 888877655544 3
Q ss_pred eeEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 579 LKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
....|+.|.. .+|++++|+|--+.|++|+.||.|.+||+.+.+.+..+... ...|.+++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 3445665543 26889999999899999999999999999999888877654 3379999999999999998
Q ss_pred EC
Q 001178 651 TA 652 (1131)
Q Consensus 651 ~~ 652 (1131)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-25 Score=218.76 Aligned_cols=241 Identities=16% Similarity=0.262 Sum_probs=197.0
Q ss_pred ccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+.||.+.|.|++=+|.. ..+|+|+.||.|++||+....+.. .+.+|.+.|..|++.. . .++++|+|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 57999999999999987 789999999999999999877665 7899999999999987 3 58999999999999
Q ss_pred eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 484 DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 484 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
-..+..+.++.+. ..+..+.-+ ..+..++|++. .|.|||.....++..+......|.++.|+|....++.++.
T Consensus 135 k~~~~p~~tilg~-s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~-- 207 (433)
T KOG0268|consen 135 KIDGPPLHTILGK-SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA-- 207 (433)
T ss_pred eccCCcceeeecc-ccccccccc--cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--
Confidence 9888777776543 334455432 22356777764 5899999988888888888888999999998776655442
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+.|.+||++++.+++.+... ..-+.++|+|.+-.+++|++|..++.||++..+ ++..... +...|.++.|+|
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsp 282 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSP 282 (433)
T ss_pred -cCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcc--cceeEEEeccCC
Confidence 2899999999999988776532 246679999977788889999999999998743 4444444 444899999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|+-+++|+.|.+|+||....+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CcchhccccccceEEEeecCCC
Confidence 9999999999999999998765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=222.75 Aligned_cols=292 Identities=15% Similarity=0.218 Sum_probs=233.3
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+.++++.|+.-|.++++|...++ +.||+ .|-|+|||+....-.. ++. +.. .-....-|.++.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~--Pvs-----------qLd-cl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS--PVS-----------QLD-CLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC--ccc-----------ccc-ccCcccceeeeEec
Confidence 45667889999999999999985 88887 5789999997542211 110 111 11235679999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.++|..||.|.||| .+...+..|.||.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987542 22223443344678899999999 899999999999999 6677789999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
+.+.|+.+ +.+|..|.+|+-|++||.||++++........ ...|.++.++|++.+++++-. ++.+.+......
T Consensus 552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~skp 624 (705)
T KOG0639|consen 552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSKP 624 (705)
T ss_pred CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecCCc
Confidence 99999998 46778999999999999999998877765443 346999999999999999976 677777765432
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
....+.. +...|.++.|.+.|+++++.+.|+.+..|...-|..+...+.. ..|.++.++.|.+++++|+.|....
T Consensus 625 -~kyqlhl-heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 625 -EKYQLHL-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred -cceeecc-cccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceE
Confidence 3333333 4448999999999999999999999999999988877666543 3799999999999999999999888
Q ss_pred EEec
Q 001178 658 ILAN 661 (1131)
Q Consensus 658 iw~~ 661 (1131)
+|.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8865
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-20 Score=206.84 Aligned_cols=277 Identities=17% Similarity=0.218 Sum_probs=222.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|...-+.++|.|+|. +|.+++.||.|++|+...-.... .++.-++..|.+++.. +.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~~--s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIACY--SNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEeec--ccce
Confidence 4888899999999998 68899999999999987653111 0222367778777764 4599
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.+++|.+|...+++.-.. +..-+-++++++|+-+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 9999999999999988764321 333456799999999999 899999999999999 8888889999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------C-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------P-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.++| ++.+|++.+.||.|++|+++++.....+.. . ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9965 558999999999999999998766554332 2 346788999999777777665 8999999999
Q ss_pred CCeeeEEEecccCC-ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 576 EGALKRTYIGFRKK-SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+......+...... .+..+.|+|.|.|||+++.||.|.|||.++.+. |.....|.+++|.|+.+-+-.-...|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 98888877654433 388899999999999999999999999998322 33344799999999988776666666
Q ss_pred cEEEE
Q 001178 655 GIKIL 659 (1131)
Q Consensus 655 ~i~iw 659 (1131)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=202.66 Aligned_cols=243 Identities=19% Similarity=0.256 Sum_probs=203.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+..|.++|+++|.+ |.++|+|+.|-+|+|||+.....+. .+..|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 467899999999985 8999999999999999999876554 57789999999999998743359999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+ ..-.++..+++|.+.|+.++++|++ ++.++.+.|+.+++||+-.++.-........ -+.+.|+|.|.+++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 7788999999999999999998865 7888999999999999988877665554333 34599999999888886
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE--
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-- 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~-- 640 (1131)
...|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||.+...+...+..|.. .|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 567999998887766655432 246666665 567899999999999999999888888877765 7888874
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 567889999999999999998765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=203.01 Aligned_cols=252 Identities=20% Similarity=0.303 Sum_probs=208.2
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~ 481 (1131)
+...|.+.|..+...--|++||+|+.|++|+|+.+++........+|.||.++|+.++|.. -|. +|++|+.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 5678999999999999999999999999999999998776667778999999999999987 677 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc---eeEEecCCCceEEEEEEccC---
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG---SRVDYDAPGLWCTTMLYSAD--- 552 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~--- 552 (1131)
||. ..|+ .......|...|++++|.|..-|-.|++++.||.|.+.+++... .......|...|++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 5443 34556789999999999999999999999999999999988762 22345667788999999986
Q ss_pred C-----------CEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCC----CEEEEEEcCCcEEEE
Q 001178 553 G-----------SRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQIKFW 615 (1131)
Q Consensus 553 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~iw 615 (1131)
| +.|++++. |..|.+|+..++. ..+++.+|.+ .|+.++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 4 56899987 9999999988764 3345777776 89999999975 489999999999999
Q ss_pred EcCCC-eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 616 DMDNV-NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 616 d~~~~-~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
..... +.-.....+.....+..+.|+..|++|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 221111122233468999999999999999999999999743
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=204.26 Aligned_cols=322 Identities=16% Similarity=0.272 Sum_probs=239.1
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.||...|+.++-..... .+.+++.|.+.+||. .+|+|+.++.||.+.|+++.|+++. .++++++.|++-+||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence 5789999999999876655 899999999999999 9999999999999999999998754 7999999999999996
Q ss_pred CCCCceeEEe---cCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE
Q 001178 528 YDNVGSRVDY---DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 528 ~~~~~~~~~~---~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
..-.-..... ..|... ..+.-+ .+.. ...++...| ..+| ..++..+.+|.. .|.+..|-..|+.+
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~-d~d~~~~sD-~~ti-------RvPl~~ltgH~~-vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNR-DTDSSEKSD-GHTI-------RVPLMRLTGHRA-VVSACDWLAGGQQM 287 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhccccccc-ccccccccC-Ccee-------eeeeeeeecccc-ceEehhhhcCccee
Confidence 3211111000 001000 000000 0110 000000000 1122 235567788666 88888899999999
Q ss_pred EEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccc
Q 001178 604 LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAST 683 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1131)
++++.|.+..+||+++++.+..+.+|.+ ..+.++-+|..+++++.+.|.+.++||+.....
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~----------------- 348 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ----------------- 348 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcc-----------------
Confidence 9999999999999999999999988776 789999999999999999999999999753210
Q ss_pred cccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCC
Q 001178 684 EMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPES 763 (1131)
Q Consensus 684 ~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~ 763 (1131)
T Consensus 349 -------------------------------------------------------------------------------- 348 (481)
T KOG0300|consen 349 -------------------------------------------------------------------------------- 348 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+ +.+ ..+|...|+++.|..
T Consensus 349 --------s------------------V~V-----------------------------------FQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 349 --------S------------------VAV-----------------------------------FQGHTDTVTSVVFNT 367 (481)
T ss_pred --------e------------------eee-----------------------------------ecccccceeEEEEec
Confidence 0 000 115778888888887
Q ss_pred CCCEEEEEe-CCeEEEEECCCce-eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE----Eeecccc
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK----TKLKGHQ 917 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~----~~~~~h~ 917 (1131)
|.+ +++|+ |.+|+|||+.+.. .+.++. ...++..++.+. ++.+||.--++..|++||+...++- ..-++|.
T Consensus 368 dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 368 DDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred CCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 765 44555 7889999988754 455555 357789999998 8889999999999999999755432 2346899
Q ss_pred cCeeEEEEccCC--CEEEEEeCCCcEEEEEcCC
Q 001178 918 KHITGLAFSTNL--NILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 918 ~~V~~l~~s~dg--~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.-|+|++|..+. .-|+++|.|..+.-|.+..
T Consensus 445 RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeeeeeeccccCcccccccccccceeeeeEecc
Confidence 999999998764 3488999999999999876
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=201.23 Aligned_cols=298 Identities=13% Similarity=0.177 Sum_probs=222.4
Q ss_pred CcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
+.|.++.+++++.. -.|+.||+.|. +||+|+.||.|.|||+.|...-+ ++.+|..+|+|
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45666777888776 89999999997 69999999999999999876443 68899999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
++||+||+.|++++.|..|++||+..|.++++. ....+|+.+.|.|..++. ++.+-.+..-.+-+.+...-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCe-EEEEEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999876533 246789999999977763 344333334444442221111111
Q ss_pred C-CccCeEEE--eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 495 G-HEAPVYSV--CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 495 ~-h~~~v~~~--~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
. ..+..... +-..+..|+++++|...|.+.++|.++.+....+.... ..|..+.++..|++++.-+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 1 11111111 11235667999999999999999999998887766555 68999999999999999876 99999
Q ss_pred EEeCCCC-------eee--EEEec-ccCCceEEEEEeCCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 571 EWNESEG-------ALK--RTYIG-FRKKSAGVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 571 iwd~~~~-------~~~--~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
.|+++.- ++. +++.. .......+++|+.+|.++++++. -..++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9997631 111 11110 01124567899999999888764 467999999999999998776543 578899
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCC
Q 001178 640 FNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988777766 7899999987543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-24 Score=199.85 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=204.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
.|.+-|..+...--|++ |||++.|++|+|+.+..+.... ....+.||.++|..++|.. -|.
T Consensus 9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence 38889999988888985 9999999999999998766422 1236889999999999987 899
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCce--eEEecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRK--LFQFEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~--~~~~~~h~~ 498 (1131)
+||+++.||.|+||.-++|. ..+..+...|...|++++|.|.+..+.|++++.||.|.|.+ .+|.- ......|.-
T Consensus 72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI 150 (299)
T ss_pred EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence 99999999999999999884 55666788999999999999998888999999999999998 33222 233558999
Q ss_pred CeEEEeecccCC------------ccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCC----CEEEEEe
Q 001178 499 PVYSVCPHQKEN------------IHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADG----SRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~------------~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g----~~l~~~~ 560 (1131)
.|++++|.|..- -+.|++|+.|+.|++|+.++..-.. .+..|...|+.++|.|.- .++++++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999999987522 1569999999999999998763322 478899999999999964 5688887
Q ss_pred ecCCCCceEEEEeCCC--CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 561 TSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
. |+++.||.... +....++.......+..+.|+..|+.|++++.|+.+.+|.-..
T Consensus 231 q----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 Q----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred C----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 6 99999997652 1222222222233788999999999999999999999997543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=215.51 Aligned_cols=264 Identities=16% Similarity=0.248 Sum_probs=211.1
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+.|.++|+.+.+-|....++|+++..+.|.|||..+-.-.... .+...+...+.||...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 44456799999999999999989999999999999998754332210 001123336889999888899999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeE
Q 001178 420 DGN-FIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLF 491 (1131)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~ 491 (1131)
... +|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 644 889999999999999976443 5556678999999999999998777 799999999999999 5 455667
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEccCCCE-EEEEeecCCCCceE
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i 569 (1131)
...+|.++|.|++|+|.. +.+|++||.|++|.+||+++... ...+..|...|..+.|+|.... |++.+. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 778999999999999865 58999999999999999998765 4488899999999999997655 555554 9999
Q ss_pred EEEeCCCC--------------eeeEEEecccCCceEEEEEeCCCCE-EEEEEcCCcEEEEEcCC
Q 001178 570 VEWNESEG--------------ALKRTYIGFRKKSAGVVQFDTTRNR-ILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 570 ~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~ 619 (1131)
.+||+..- +++..-.||.. .|..+.|+|...+ ++++++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998531 12334445544 7888999999875 55688999999999863
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=229.51 Aligned_cols=227 Identities=15% Similarity=0.222 Sum_probs=180.4
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCc--------eeEEecCC
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--------KLFQFEGH 496 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--------~~~~~~~h 496 (1131)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|+||+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5678899999986643 34468899999999999997 56 899999999999999 4332 34567899
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999987542 456799999999999999888766665 4567999999999999998876 88999999999
Q ss_pred CeeeEEEecccCCc----eEEEEEeCCCCEEEEEEcCC----cEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 577 GALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDN----QIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
++.+..+.+|.+.. +....|+++++++++++.|+ .|++||++. ++++.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887632 12234568889999988774 799999985 5666666555543333344445568899
Q ss_pred EEEECCCcEEEEecCCC
Q 001178 648 VVTTADQGIKILANADG 664 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~ 664 (1131)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999765
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=195.24 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=189.5
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
......|++|.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.+ +++|+-||.|+.+|.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3557889999999999999999999999999998864332 235899999999998765 899999999999997
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.......+-.|..+|.|+...+.. ..+++|+.|++|++||.+.......+.... .|.++..+ |+.|++++.
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~---- 153 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTS---- 153 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeec----
Confidence 666677777899999999987544 589999999999999998744444444333 67666554 667887765
Q ss_pred CceEEEEeCCCCeeeE-EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----eEEEEEeccCC-------CC
Q 001178 566 DSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----NMLTSTEAEGG-------LP 633 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 633 (1131)
+..+.+||+++..... .....-.-.+.++++-|++.-+++++-||.|.+=.++.. +....++.|.. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 8899999998754432 112222236889999998888999999999988666554 33333433321 12
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|++++|+|-...+++|+.||.|.+||..+.
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcch
Confidence 6899999999899999999999999998776
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-19 Score=200.37 Aligned_cols=247 Identities=14% Similarity=0.198 Sum_probs=209.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
..|...-+.++|.|+|.+|.+++.||.|++|+..+..... ..+.-|...|.+++.. +. +|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--~ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--ETIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--chhhccCceeEEEeec--cc--ceEEeeccceEEEeeC
Confidence 3788889999999999999999999999999987763211 1233377778877765 44 699999999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
-++..-..+...+-++.++++ +.+|.+++.||.|-.|++-+.........+.+|..+|.++.|+|++.+||+.+.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 555544445555678889988 467789999999999999999999999999999999999999999999999987
Q ss_pred CCceEEEEeCCCCeeeEEEeccc-------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 565 GDSHLVEWNESEGALKRTYIGFR-------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
+|.|++||++++.+..++.+.. ...+..++|+|++..+++.+.|+.|++|+..+.+....+........+.+
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 9999999999988776665332 22456699999999999999999999999999999988887766666999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.|+|+|.+||+++.+|.|.|||..+.
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccc
Confidence 999999999999999999999999863
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-20 Score=208.69 Aligned_cols=507 Identities=14% Similarity=0.147 Sum_probs=319.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC---EEEEEeC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN---FIGVAFT 429 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~ 429 (1131)
-.||+|+++++.+ .+..|.||...+|+++. .+.+|..++..+.+.|... ++.+++.
T Consensus 22 avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl 80 (792)
T KOG1963|consen 22 AVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCSL 80 (792)
T ss_pred cccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEec
Confidence 4789999965443 36699999999999986 5889999999999998554 6779999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEec----CCCceEEEEEcCCCcEEE---EeC--CC----------cee
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCGDDKLIRV---WDL--SG----------RKL 490 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~----d~~~~~l~s~s~d~~i~i---wd~--~~----------~~~ 490 (1131)
||+|++||...+..++ ++.. ..++.++.+.| ... .+..+..|..+.. -+. ++ ...
T Consensus 81 ~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 81 DGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred CccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 9999999999987654 2222 22344433322 111 1112222211111 010 00 111
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
..+.+|.. -.++.+++.. .+.....+..+.+|+........ .-..|...+++.+++|++++++++.. +
T Consensus 155 d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~----d 226 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS----D 226 (792)
T ss_pred hhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----C
Confidence 11122322 2344443333 33444456678888877654211 11224445899999999999999965 8
Q ss_pred ceEEEEeCCC----CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 567 SHLVEWNESE----GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 567 ~~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|+|.+|.--. ......+.-|++ .|.+++|+++|.+|++|+..|.+.+|.+.+++ .+.++.-+. +|..+.++|
T Consensus 227 GrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs--~I~~i~vS~ 302 (792)
T KOG1963|consen 227 GRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS--PILHIVVSP 302 (792)
T ss_pred CcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCC--eeEEEEEcC
Confidence 9999996432 123345555555 89999999999999999999999999999988 333333333 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCC
Q 001178 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
|+.+.++...|+.|.+....+. .....+.+-... .|+
T Consensus 303 ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~-------------------~~~----------------------- 339 (792)
T KOG1963|consen 303 DSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPP-------------------TPS----------------------- 339 (792)
T ss_pred CCCeEEEEecCceEEEEeccch-hhhhhccCccCC-------------------Ccc-----------------------
Confidence 9999999999999999987665 333333321110 000
Q ss_pred ccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC
Q 001178 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN 802 (1131)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 802 (1131)
. .....+-.+.++++|.-..++..+..|.+++||+......
T Consensus 340 ----------------~-----------------------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 340 ----------------T-----------------------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred ----------------c-----------------------cccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 0 0112233456777776667777888899999988664332
Q ss_pred CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---------CCe--EEEEECCCc----eeE
Q 001178 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---------GGK--VSLFNMMNF----KVM 867 (1131)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---------dg~--i~vwd~~~~----~~~ 867 (1131)
. ...+...+...|.. .+.-.++.++.+..|.++++.. ||. +++|-.... .+.
T Consensus 381 ~------~~~v~~~n~~~~~~-------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~ 447 (792)
T KOG1963|consen 381 Y------KLQVCDENYSDGDV-------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN 447 (792)
T ss_pred e------eEEEEeecccCCcc-------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence 1 11112222222221 2355678888888999999873 333 888965543 333
Q ss_pred EEEe-CCCCCeeEEEEeCCCCc-EEEEEeCCCcEEEEEeecc----------eeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 868 TTFM-SPPPASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVD----------EVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 868 ~~~~-~~~~~i~~l~~s~~~~~-~la~g~~dg~I~iwd~~~~----------~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
..+. .|...+...++.+.-.. .+++++.||.++||-+... .|...-.-|..++++++|+.||..|+ +
T Consensus 448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~ 526 (792)
T KOG1963|consen 448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-V 526 (792)
T ss_pred EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-E
Confidence 3332 56666666665542333 8899999999999988432 23333334889999999999996555 5
Q ss_pred eCCCcEEEEEcCCC-ceeeeeeeecCCCCCCCCceEEEEc---CCCcEEEEEeCCeEEEEeCCCcccce
Q 001178 936 GSDAQLIFWNTDTW-EKRKSIAIQLPAGKLPVGETRVQFH---SDQVRLLVNHETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 936 ~~Dg~v~lwd~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s---~d~~~l~~~~d~~i~vwd~~~~~~~~ 1000 (1131)
+.|++|.+||..+. +... ..+....++..+.|. +....+...+..++.+|++-+...+.
T Consensus 527 s~~~~Itiwd~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 SFDDTITIWDYDTKNELLC------TEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred ecCCEEEEecCCChhhhhc------cccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 66779999999883 2111 111111222233332 22223444678889999998777665
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=218.89 Aligned_cols=275 Identities=16% Similarity=0.250 Sum_probs=217.6
Q ss_pred CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeE-EEec
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s 842 (1131)
.+|...|..+++.+.. .++.++.||++++|+-.. +..+......++.+.|.. +++.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAFEGPKGFIANSICYA 67 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceecccCcceeeccceec
Confidence 4588888888866554 688899999998886322 222221122245555555 7776
Q ss_pred C-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe
Q 001178 843 K-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1131)
Q Consensus 843 ~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V 920 (1131)
+ ++-.+++|+ |++|.+|...+..++.++.+|...|.++.... ++. +++|++|.++++|.. +++...+++|...|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asV 143 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASV 143 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchhe
Confidence 4 444577777 99999999999999999999999999999877 565 889999999999975 56677799999999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccce
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~ 1000 (1131)
+++++-|++ .++|||.|++|++|.-.+ ..+...+| ...|+.+++-+++.+|.++.||.|+.|++ +|+++.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gH-tD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGH-TDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccc-hhheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999999987 899999999999998654 34445553 48999999999999999999999999999 788888
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
.+.+| ..-|+++....++..++++++|+++++|+.. ++...+..+ +..++. +.+.++ .-++
T Consensus 214 ~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP----------ttsiWs--a~~L~N--gDIv 274 (745)
T KOG0301|consen 214 EMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP----------TTSIWS--AKVLLN--GDIV 274 (745)
T ss_pred eeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC----------ccceEE--EEEeeC--CCEE
Confidence 88777 8899999999999999999999999999976 555444422 223443 333342 3588
Q ss_pred EEecCCcEEEEecC
Q 001178 1081 VGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~~ 1094 (1131)
+|+.||.||||...
T Consensus 275 vg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVD 288 (745)
T ss_pred EeccCceEEEEEec
Confidence 99999999999976
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=209.65 Aligned_cols=273 Identities=13% Similarity=0.151 Sum_probs=204.7
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|..++|-|||..+++.+ +..+.|||.+.|..+. ++++|.+.|.|++||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 899999999998766554 4589999999999876 5889999999999999999999999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeeccc
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQK 508 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~ 508 (1131)
.|+.|.+|+-+-...++ ..|...|.|+.|+|-.. .++||+-. ..-+|....+.+.+.+ ...++.+.+| .
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K~k-ss~R~~~CsW--t 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSKHK-SSSRIICCSW--T 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHhhh-hheeEEEeee--c
Confidence 99999999976543332 46999999999999988 68888753 4668885444443332 2345666666 6
Q ss_pred CCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEEEEccCCC-----EEEEEeecCCCCceEEEEeCCCCeee
Q 001178 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGS-----RLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.||++++.|-.+|+|.+-+- +++....+.. ...+|.+++|+|... .+++... ..++..+.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 78899999999999998754 3344443333 556899999999642 3444432 3445555443 4433
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..-.. -+....|+.+.++|.+++.|+.|+.+.+|.. .|-.+.++....+ .|..++..|+++.++.|+.||+|.-|+
T Consensus 216 gk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred ccccc-CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccce--eEEEEEEccCCceEEEEEccCeeehhh
Confidence 32221 1124567888999999999999999999975 4556666544333 799999999999999999999999998
Q ss_pred cCC
Q 001178 661 NAD 663 (1131)
Q Consensus 661 ~~~ 663 (1131)
+..
T Consensus 292 l~f 294 (1081)
T KOG1538|consen 292 LIF 294 (1081)
T ss_pred hHH
Confidence 743
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=210.17 Aligned_cols=281 Identities=15% Similarity=0.208 Sum_probs=226.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCC-CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
|..-|.++.+|...+.+++++. |.|++||+...... |.... | .. .....|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqL---------d----------cl-~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQL---------D----------CL-NRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccc---------c----------cc-CcccceeeeEecCC
Confidence 7778888999988888877664 68999998764211 11110 0 00 35778999999999
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEE--EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
|+.|++|+ -.++.|||+..-.... .+........+++.+| |.++.+++..||.|.|||+.+...+..|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 5789999998654433 3333345678899999 899999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccce
Q 001178 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~ 1000 (1131)
||..++||..|-|||-|.+|+-||+..+... ..+.+.+.|.++..+|.+.+|++|- ++.+.|......+..
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY- 627 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-
Confidence 9999999999999999999999999986542 3334447899999999999999985 677888776644433
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEE
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLA 1080 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~ 1080 (1131)
.+..| .+.|.++.|++.|+++++.+.|+.+..|...-|..+.+... .++|.+.+|.+ +..+++
T Consensus 628 qlhlh---eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-----------~SsVlsCDIS~---ddkyIV 690 (705)
T KOG0639|consen 628 QLHLH---ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----------SSSVLSCDISF---DDKYIV 690 (705)
T ss_pred eeccc---ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-----------cCcceeeeecc---CceEEE
Confidence 33333 78999999999999999999999999999999988877663 44566556654 668999
Q ss_pred EEecCCcEEEEec
Q 001178 1081 VGLTDGSVKVIEP 1093 (1131)
Q Consensus 1081 s~~~Dg~v~iW~~ 1093 (1131)
||+.|..--+|.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 9999998888875
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=203.45 Aligned_cols=290 Identities=16% Similarity=0.251 Sum_probs=228.2
Q ss_pred CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCCc
Q 001178 589 KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~~ 665 (1131)
+.|+++.|+|....+++++.||+++||.+... ..++.+..... +|.++.|.|+|. .+++++....++.||+.+.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f--Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF--PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccC--ccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 37999999999999999999999999988654 35555554443 899999999999 88999999999999986651
Q ss_pred hhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCccee
Q 001178 666 RALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWE 745 (1131)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~ 745 (1131)
..+ ++|-
T Consensus 292 -~~k--------------------------~~~~---------------------------------------------- 298 (514)
T KOG2055|consen 292 -VTK--------------------------LKPP---------------------------------------------- 298 (514)
T ss_pred -ccc--------------------------ccCC----------------------------------------------
Confidence 000 0000
Q ss_pred eecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc
Q 001178 746 LTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT 825 (1131)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 825 (1131)
T Consensus 299 -------------------------------------------------------------------------------- 298 (514)
T KOG2055|consen 299 -------------------------------------------------------------------------------- 298 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 826 NDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
.+.....+....+|+++++|+..+ .|.|.+....+++.+.+++. .+.|..++|+. +++.|.+.+.+|.|++||+
T Consensus 299 ---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 299 ---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNL 373 (514)
T ss_pred ---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEec
Confidence 000123445677889999999888 79999999999999988874 57799999998 7888888889999999999
Q ss_pred ecceeEEeeccccc-CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 905 RVDEVKTKLKGHQK-HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS-IAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~-~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~-~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
....++..+....+ .-++++.|++|.+||+|+..|.|-|||.++...... .++... ......|++++|++|++.||.
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV-DNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh-hhhheeeeeeeeCcchhhhhh
Confidence 99998888864322 236688889999999999999999999776221111 111111 112268999999999999997
Q ss_pred Ee---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 983 NH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 983 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
++ ...+++-.+.+......|......-+.|+|++|||.|.+||.|.++|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 54 6789999999999888888775556789999999999999999999999999863
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=205.38 Aligned_cols=223 Identities=16% Similarity=0.195 Sum_probs=191.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC---
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL--- 485 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~--- 485 (1131)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +|+|||.||.|.+|..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999998775 5689999999999999999 8999999999999972
Q ss_pred -------CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEE
Q 001178 486 -------SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 486 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+-++++.|..|.-+|+.+.+.+.+-..+++|+|.|.++++||+..+..+..+... ..+.+++.+|.++.++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999988777766544 46999999999999999
Q ss_pred EeecCCCCceEEEEeCCC----------------CeeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 559 CGTSKEGDSHLVEWNESE----------------GALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
|+. +|.|.+.++.. +..+..+.+|.+ ..|+|++++.||..|++|+.||.++|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 88888877532 223456777766 589999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCcceEEEcCC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 88887632 237888888664
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=188.69 Aligned_cols=300 Identities=17% Similarity=0.240 Sum_probs=225.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|.+.|+++.+.|...+++++|+.||.|.|||++.........+ + -...|....+ --.+|.-.|..+-|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i-~k~~c~v~~~--h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-I-AKHKCIVAKQ--HENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-e-eheeeecccc--CCccceeeeeeeEEeeecCce
Confidence 39999999999996545699999999999999986542221000 0 0011111111 2458999999999999 6668
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCC-ceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNK-QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~ 501 (1131)
+.+++.|.+++|||..+-+... .+. -.+.|.+-++||-.. ..++++|..|-.|++.| .+|..-+.+.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8899999999999998854332 332 456688888988543 33788888999999999 99999999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEE--------------ecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVD--------------YDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
++.|+|..+ -.|++|+.||.|++||++.. .+... ...|.+.+..++|+.+|.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999998665 68899999999999999864 22222 2345567999999999999999987 8
Q ss_pred ceEEEEeCCCCeeeEEEec---ccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE
Q 001178 567 SHLVEWNESEGALKRTYIG---FRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~---~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1131)
..+++|+...|+....-.+ +.. ..+. +. +.+...++.--.++.+.++++-.++.+..+..|.. .|.+.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--RINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccc--eeeEEee
Confidence 8999999988764221111 011 0111 22 23334455555679999999999999999988844 7999999
Q ss_pred cCCCCEEEEEECCCcEEEEec
Q 001178 641 NKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
-|+-+...+|..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999975
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-22 Score=202.80 Aligned_cols=287 Identities=13% Similarity=0.203 Sum_probs=231.2
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la 425 (1131)
.+.|++|.|+|.-. +|.+++.||+++||.++........ .+.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lq-----------------S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQ-----------------SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhe-----------------eeeeccCccceeeecCCCceEEE
Confidence 46999999999987 7999999999999999754332211 1222356899999999999 899
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
+++.......||+.+++.. +...+.++. ..+.....+++++ +|+..|..|.|.+.. .++..+..++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 9999999999999997743 334455655 4678889999999 899999999999999 8888887776 56789999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC------
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE------ 576 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~------ 576 (1131)
+|+ .+++.|++++.+|.|.+||++.......+...+. .-++++.+++|.+||+|+. .|.|.|||..+
T Consensus 351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 996 6678999999999999999999988877766544 4578888999999999986 89999999643
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECC
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+++..+..-.. .|+.+.|+++.+.|+.++ .+..+++-.+.+.....-++.. .....++|++|+|.+.++|+|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 445555554333 788999999999988877 4678999998877665554433 334468999999999999999999
Q ss_pred CcEEEEecC
Q 001178 654 QGIKILANA 662 (1131)
Q Consensus 654 g~i~iw~~~ 662 (1131)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=200.66 Aligned_cols=293 Identities=15% Similarity=0.226 Sum_probs=219.6
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEE-EEeccCCCCCcceEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLT-STEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~v~~sp~ 643 (1131)
...+.+||+++|.....|++.....-.++..- .+.+++++. ....|.+|.+....... .+..++ ++.+++-+|+
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg---~v~al~s~n~ 92 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG---PVHALASSNL 92 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccccc---ceeeeecCCC
Confidence 55699999999999999887522122222211 235666655 44578999987665444 222222 6899999999
Q ss_pred CCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCc
Q 001178 644 GNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADS 723 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~ 723 (1131)
|.+|+.|+..|.|++|.+.+| ..+..+.
T Consensus 93 G~~l~ag~i~g~lYlWelssG-~LL~v~~--------------------------------------------------- 120 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSG-ILLNVLS--------------------------------------------------- 120 (476)
T ss_pred ceEEEeecccCcEEEEEeccc-cHHHHHH---------------------------------------------------
Confidence 999999989999999999998 4444332
Q ss_pred cccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCC
Q 001178 724 AARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1131)
Q Consensus 724 ~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1131)
.|...|+++.|+.||..+++++.||.|.+|.+..-....
T Consensus 121 -----------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 121 -----------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred -----------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 278899999999999999999999999999876421111
Q ss_pred CCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC--CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEE
Q 001178 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND--SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFL 880 (1131)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg--~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l 880 (1131)
.. ...........|.-+|+++...+.| .+|++++ |.++++||+..+.++.++.- ...+.++
T Consensus 160 ~~---------------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av 223 (476)
T KOG0646|consen 160 ND---------------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAV 223 (476)
T ss_pred cC---------------CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeE
Confidence 10 0111111122688999999887664 4777877 99999999999999888764 5679999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeec----------------ceeEEeeccccc--CeeEEEEccCCCEEEEEeCCCcEE
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRV----------------DEVKTKLKGHQK--HITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~----------------~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
+.+| ..+.+.+|+.+|.|.+.++.. +..+..+.||.+ +|+|++.+-||..|++|+.||.|+
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 899999999999999987643 234566889999 999999999999999999999999
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
+||+.+.++...... ..++|+.+.+.|-.+
T Consensus 303 vWdi~S~Q~iRtl~~------~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQT------SKGPVTNLQINPLER 332 (476)
T ss_pred EEecchHHHHHHHhh------hccccceeEeecccc
Confidence 999999776544431 126788888765433
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=200.19 Aligned_cols=293 Identities=18% Similarity=0.253 Sum_probs=224.9
Q ss_pred CCCcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 346 QGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+..+|++++|+|... .++|+|..-|.|=+||+.+.+....+. ..+..|..+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 788999999999865 689999999999999997555443321 14789999999999999 4568
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~ 501 (1131)
+.+.+.||+|+.-|++++. ......+......+.++.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 8889999999999998854 233333443556788999999888 577777777999999 56666778888999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCcee----EEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-- 575 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-- 575 (1131)
+++++|... .+++|++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998655 79999999999999999875433 345568889999999999888998876 9999999973
Q ss_pred --CCeeeEEEecccC--C--ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcce-EEEcCCCC-EE
Q 001178 576 --EGALKRTYIGFRK--K--SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGN-LL 647 (1131)
Q Consensus 576 --~~~~~~~~~~~~~--~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~-v~~sp~~~-~l 647 (1131)
...+...+...+. . ...-..|.|+..++++|..-..|-|+|-..++.+..+...... .|.+ ..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2233333331111 1 1223679999999999999999999999999877776544322 3443 57999777 55
Q ss_pred EEEECCCcEEEEecC
Q 001178 648 VVTTADQGIKILANA 662 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~ 662 (1131)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 555667888888643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=186.30 Aligned_cols=247 Identities=16% Similarity=0.235 Sum_probs=186.2
Q ss_pred CCCccceEEEEeecCCceEEE-eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec
Q 001178 764 TDSASKVARLLYTNSGIGILA-LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS 842 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s 842 (1131)
.+|...|..+.|-|-..-+++ ++-|.++++||.++...... + ...+.|.+-++|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~-----------F--------------~me~~VYshamS 152 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD-----------F--------------KMEGKVYSHAMS 152 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE-----------e--------------ecCceeehhhcC
Confidence 458888999998886555554 45599999999766321110 1 134556666666
Q ss_pred CCCC---EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEe-----
Q 001178 843 KNDS---YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTK----- 912 (1131)
Q Consensus 843 ~dg~---~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~----- 912 (1131)
|=.. ++|+|. +-.|++.|+.+|.+-.++.+|...|.++.|+|...-.||+|+.||.|++||+... .+...
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 6433 566666 5679999999999999999999999999999977778999999999999999753 22222
Q ss_pred ---------ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 913 ---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 913 ---------~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
-.+|.+.|.+++|+.|+.++++++.|..+++|+..+|+....................+..-..+.++..-
T Consensus 233 ~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p 312 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFP 312 (397)
T ss_pred CccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEe
Confidence 23688999999999999999999999999999999887543332222211111222223322233444455
Q ss_pred eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 984 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.++.+.++.+-++..++.+..| ...|.+.++-|+=+.+.+|+.|+.|..|-.
T Consensus 313 ~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 313 NDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCccccccc
Confidence 6799999999999999999888 789999999999999999999999999976
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=201.30 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=202.3
Q ss_pred ccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCcc-------ceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 405 VKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL-------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||....... .....+.||.+.-.+++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 4478999999999995 557777888999999999654322 223368999998899999998776 7999999
Q ss_pred CCcEEEEeCC--Cc------eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC--CCceeEEecCCCceEEE
Q 001178 477 DKLIRVWDLS--GR------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD--NVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 477 d~~i~iwd~~--~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~ 546 (1131)
|++|++||++ +. ....+.+|...|..++|++... ..+.+++.|+.+.|||++ +.+.......|...|.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999932 22 2456789999999999998655 689999999999999999 45555677889999999
Q ss_pred EEEccCC-CEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEE
Q 001178 547 MLYSADG-SRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 547 ~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
++|+|-+ ..||+++. |++|.+||+++- +.+.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999955 55666665 999999999874 46778888776 89999999986 47788899999999998652211
Q ss_pred ------------EEEeccCCCCCcceEEEcCCCCE-EEEEECCCcEEEEecCCC
Q 001178 624 ------------TSTEAEGGLPSLPRLRFNKEGNL-LVVTTADQGIKILANADG 664 (1131)
Q Consensus 624 ------------~~~~~~~~~~~i~~v~~sp~~~~-l~~~~~dg~i~iw~~~~~ 664 (1131)
-.+...+|...|..+.|+|+... +++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 12444467778999999997655 567788999999998643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-20 Score=201.16 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=154.3
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-cEEEEEeecceeEEee
Q 001178 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-TIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~I~iwd~~~~~~~~~~ 913 (1131)
..++++|+++.+++++ ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 3577888888776553 68899999999888777753 23468899999 888888888775 4677898888776554
Q ss_pred cccccCeeEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeeeeeeecCCCC-CCCCceEEEEcCCCcEEEE--EeCCeEE
Q 001178 914 KGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKSIAIQLPAGK-LPVGETRVQFHSDQVRLLV--NHETQLA 989 (1131)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~l~s-~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~-~~~~v~~v~~s~d~~~l~~--~~d~~i~ 989 (1131)
.. ...+.+++|+|+|++|+. +..++.|++||+.+++............. .......++|+|+++++++ +.++.+.
T Consensus 154 ~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 LV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred Ec-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 32 234678999999998854 45699999999998765443332211111 1123456889999998655 3567899
Q ss_pred EEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 990 vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+||..+++.+..+.. ...+.+++|+|+|++|++++ .++.|.+||+.+++.+.++..
T Consensus 233 v~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 233 VVDAKTYEVLDYLLV----GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EEECCCCcEEEEEEe----CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 999998887765432 34789999999999998874 689999999999998888863
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=217.78 Aligned_cols=235 Identities=18% Similarity=0.337 Sum_probs=210.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+ ..+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i---~S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI---TSLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh---heeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 3468888999988778899999999999999998765433 35899999999999999988 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
..++.++++.+|...+.++.|+|. +.+.++|+.|..+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 889999999999999999999765 478899999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|..+++||...|+....|..|.. .+.++.|+|..-.++.|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 89999999999999999998776 8888999998888999999999999999998888776655 347999999999
Q ss_pred CCEEEEEECC
Q 001178 644 GNLLVVTTAD 653 (1131)
Q Consensus 644 ~~~l~~~~~d 653 (1131)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9998887654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-19 Score=195.92 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=211.9
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
++++++.|+.+++|| .+++.+..+..+.. +.+++|++ ++..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 688999999999999 77888888876544 56788864 45555 567789999999998877665554433 35678
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC-cEEEEEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~ 626 (1131)
+++|+++.+++++. .++.+++||+.+++.+..+... ..+..++|+|++.++++++.++ .+.+||..+++.....
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876642 2679999999998877777532 2467799999999999888765 4677899888776655
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
.... ....++|+|+++.+++++ .++.|++||+.++. ....+.
T Consensus 154 ~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~--------------------------------- 196 (300)
T TIGR03866 154 LVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKIT--------------------------------- 196 (300)
T ss_pred EcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeee---------------------------------
Confidence 4322 457899999999886554 58999999987651 100000
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEe
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1131)
+...+
T Consensus 197 ---------------------------------------------------------------------~~~~~------ 201 (300)
T TIGR03866 197 ---------------------------------------------------------------------FEIPG------ 201 (300)
T ss_pred ---------------------------------------------------------------------ecccc------
Confidence 00000
Q ss_pred eecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCC
Q 001178 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN 863 (1131)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~ 863 (1131)
.. ........++|+|++++++++. ++.+.+||+.+
T Consensus 202 ------------------------------------------~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 202 ------------------------------------------VH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred ------------------------------------------cc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00 0011123578899999865543 67899999999
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEE-eCCCcEEEEEeecceeEEeecccccCeeEEEEcc
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIG-MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g-~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 927 (1131)
++.+..+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..++.. ...+.++|+|
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88876654 345789999999 78777776 56899999999999999988765 4558888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=182.09 Aligned_cols=252 Identities=12% Similarity=0.210 Sum_probs=190.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 490 (1131)
-.|+.||+.|.+||+|..||.|.|||+.+-..- ..+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh---hhhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 789999999999999999999999999986533 36889999999999999999 899999999999999 899988
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc----eEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL----WCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
+.++ ...+|+...|+|......+++-- +..-.+-++........-..... ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 8886 67899999999987755555443 33344445544222221111111 1233468999999999976 9
Q ss_pred ceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC-------eEE--EEEeccCCCCCcce
Q 001178 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-------NML--TSTEAEGGLPSLPR 637 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~i~~ 637 (1131)
|.+.++|..+.+++..++-.....|..+-++..|.+++.-+.|+.|+.|++..- +.. +.++.--+...=.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 999999999999998887655447888999999999999999999999997631 111 11110001112357
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEecCCCchhhhhhhccc
Q 001178 638 LRFNKEGNLLVVTTA-DQGIKILANADGLRALRAIETRA 675 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~ 675 (1131)
++|+.+|.+++.++. ...++||.-..| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 899999999987764 568999998877 5666655543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=191.19 Aligned_cols=275 Identities=14% Similarity=0.220 Sum_probs=214.5
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+ .|.+++|+.+|+++++|+.|..+.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-----CCEEEEEeCCCcccccccccccc-eEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 688999999999998886 67899999999999999999888 899999999999999999999999998654333
Q ss_pred EEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccc
Q 001178 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSK 702 (1131)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~ 702 (1131)
++- .|...|.|+.|+|-...+++++-. ..-+|..... .+..
T Consensus 88 LkY----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK--~V~K-------------------------------- 128 (1081)
T KOG1538|consen 88 LKY----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK--SVSK-------------------------------- 128 (1081)
T ss_pred eee----ccCCeeeEeecCchHHHhhhcchh-hccccChhhh--hHHh--------------------------------
Confidence 322 344589999999998888887654 3456654322 0000
Q ss_pred cccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceE
Q 001178 703 AERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGI 782 (1131)
Q Consensus 703 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 782 (1131)
.....++.+.+|..||.++
T Consensus 129 -------------------------------------------------------------~kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 129 -------------------------------------------------------------HKSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred -------------------------------------------------------------hhhheeEEEeeecCCCcEE
Confidence 1134677889999999999
Q ss_pred EEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC-----CEEEEEe-CCeE
Q 001178 783 LALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-----SYVMSAG-GGKV 856 (1131)
Q Consensus 783 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-----~~la~~~-dg~i 856 (1131)
+.|-.+|+|.+-+-. ........-+++...+|.+++|+|.. ..+++.+ +.++
T Consensus 148 alG~~nGTIsiRNk~----------------------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN----------------------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred EEeccCceEEeecCC----------------------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 999999999875321 11122223456788999999999864 3666666 6677
Q ss_pred EEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEe
Q 001178 857 SLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 857 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.+|.+. |+.+..-+.-.-...|+.+.+ +|.++..|+.|+.+.+|. ..|-.+.++-.....|+.++..|++++++.|+
T Consensus 206 SFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 206 SFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred EEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 777774 445543333345578899999 999999999999999997 45767777777788999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||+|--|++-.
T Consensus 283 qDGTiACyNl~f 294 (1081)
T KOG1538|consen 283 QDGTIACYNLIF 294 (1081)
T ss_pred ccCeeehhhhHH
Confidence 999999998754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=210.31 Aligned_cols=244 Identities=14% Similarity=0.271 Sum_probs=194.6
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCC---CcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGL---RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
.+..|+|+..-..+|||++..|.|.+||+.. .+.+. .+..|+..|+++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 5566788865556899999999999999976 22222 5789999999999999 46689
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
++|+.||+|++||++..+... ++.+....|.+++|+|...+ .++++.+.|.+++|| ...++...+..|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876443 56677889999999997655 899999999999999 556777889999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCE-EEEEeecCCCCceEEEEeCCCCee-
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGAL- 579 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~- 579 (1131)
+.|+| ++.+|+||+.|++|+|||+........... ...++..+.|-|+..+ |++++. -.+..|+|||++..-+
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccc
Confidence 99987 668999999999999999986655443333 3458999999998766 455543 3478999999987654
Q ss_pred eEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCC
Q 001178 580 KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
..++..|.+ .++.++|.. |...+.+++.||+|..-..++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 456666655 888899965 3457888999998876655543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=195.18 Aligned_cols=293 Identities=14% Similarity=0.193 Sum_probs=218.8
Q ss_pred Ccccceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE
Q 001178 335 DLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 335 ~~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
.+|..+...+ +|++.|.|+...|.|. .||+|+.||+|+||.+.+|.++..-. ..+.|.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~--------------------~d~~I~ 445 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQ--------------------FDSEIR 445 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEe--------------------ecceeE
Confidence 3466666655 5999999999999998 59999999999999999999986321 234799
Q ss_pred EEEEcCCCC--EEEEEeCCCeEEEEEecCC---------------------------------Cccc-eeeeeecCcCCe
Q 001178 414 RVAWSPDGN--FIGVAFTKHLIHLYTYQGS---------------------------------NDLC-QSLEIDAHVGGV 457 (1131)
Q Consensus 414 ~~~~spdg~--~las~~~d~~i~vwd~~~~---------------------------------~~~~-~~~~~~~h~~~V 457 (1131)
|++|+|.++ .||++..+. +.|-+..-| .... .......|...|
T Consensus 446 ~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i 524 (733)
T KOG0650|consen 446 SVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI 524 (733)
T ss_pred EEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc
Confidence 999999776 455543333 333332111 1111 011234588899
Q ss_pred eEEEEecCCCceEEEEEcC---CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce
Q 001178 458 NDLAFSYPNKQLCIVTCGD---DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~---d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 533 (1131)
..+.|+..|. +|++... ...|.|++ ...+...-|+...+.|.++.|+|.. .+++.++ ...|++||+.....
T Consensus 525 ~~vtWHrkGD--YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 525 RQVTWHRKGD--YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK--PYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred ceeeeecCCc--eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC--ceEEEEe-ccceEEEehhHHHH
Confidence 9999999999 6776544 35688888 4444445566677889999999876 4566555 47899999988766
Q ss_pred eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
...+.....+|.+++++|.|..|+.++. ++.+..+|+.-+ ++.+++..|.. .++.++|++.-+++++|+.||++
T Consensus 600 vKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 600 VKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred HHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcE
Confidence 6677777779999999999999999987 899999998754 45566665554 89999999999999999999999
Q ss_pred EEEEcC------CC---eEEEEEeccCCC--CCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 613 KFWDMD------NV---NMLTSTEAEGGL--PSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 613 ~iwd~~------~~---~~~~~~~~~~~~--~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.||.-. .. -++..+..|... ..|..+.|+|...+|++++.||+|++|
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 998532 11 233445444321 237788899999999999999999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=198.14 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=209.1
Q ss_pred EEEe--cCCCcEEEEEcCCCeEEEEECCCCccc-ccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 353 MDFH--PFHHTLLVVGCGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 353 ~~fs--pdg~~llasg~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
+.|+ |+.+.+||.+..||.|.++|....... ....|+ ....|...|..+.|-|....|++++.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasG 120 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASG 120 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccC
Confidence 4454 345568999999999999998754332 111111 35589999999999996678999999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCc-------------------
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR------------------- 488 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~------------------- 488 (1131)
|.++++||++++...... .+.||.+.|.++||.|++.. .|++|+.||.|.||| .++.
T Consensus 121 DsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred Cceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 999999999998766543 47899999999999999887 899999999999999 2220
Q ss_pred -------eeEEecCCccCeE----EEeecccCCccEEEEEec-CCeEEEEeCCCCceeEE--------ecCC---CceEE
Q 001178 489 -------KLFQFEGHEAPVY----SVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVD--------YDAP---GLWCT 545 (1131)
Q Consensus 489 -------~~~~~~~h~~~v~----~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~--------~~~~---~~~v~ 545 (1131)
.+.....+...|. .+.| .|...|++++. |+.|+|||++....... +..+ ...+.
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0111123333343 3443 44578888887 99999999987554332 1222 23578
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCC--eeeEEEecccCCceE-EEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG--ALKRTYIGFRKKSAG-VVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
++.....|.+|++.+. |+.|+.|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.
T Consensus 276 nL~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred EEEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 8888888899887776 999999998753 244555555443333 245789999999999999999999987653
Q ss_pred E-EEEeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecCCC
Q 001178 623 L-TSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~-~~~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
- ..+. ++...|++++|.|. -.-++++++|..+++|++.++
T Consensus 352 ~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred Chhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3 2233 34447899999873 234666799999999999766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-20 Score=194.50 Aligned_cols=324 Identities=10% Similarity=0.157 Sum_probs=231.6
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..++.||++.|.|+...|.|.+||+|+.||+|+||.+.+|.|++.. .+ .+.|.|++|+|.+...+|+.+-.+. +.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~---d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QF---DSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-ee---cceeEEEEecCCCCceeEEEEecCc-eE
Confidence 3478999999999999999999999999999999999999988743 23 4469999999998864555554444 76
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE----ecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccC
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----AVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~ 552 (1131)
|-+ .-|..+..-. +. ..|+++ ..++.+..|.-.... .+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~--t~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP--TK-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc--hh-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 776 4442221110 00 111111 235567778644211 12244456778999999999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|.||++... .++...|.|.++.......-|....+ .+.++.|+|...+|++++. ..|+|||+..++.+..+... .
T Consensus 533 GDYlatV~~-~~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 533 GDYLATVMP-DSGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred CceEEEecc-CCCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 999999874 23467889999887766655654333 7889999999999988876 57999999987776665533 3
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1131)
..|..++.+|.|..|+.|+.|+.+..+|+.-.....+.+..
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--------------------------------------- 648 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--------------------------------------- 648 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh---------------------------------------
Confidence 37899999999999999999999999998766555555433
Q ss_pred CccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee
Q 001178 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1131)
Q Consensus 713 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1131)
|...+++++|.+.-..+++++.||++.
T Consensus 649 -----------------------------------------------------H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 649 -----------------------------------------------------HEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred -----------------------------------------------------hhhhhhhhhhccccceeeeecCCCcEE
Confidence 556667777877778888888888887
Q ss_pred EEeecCCCCCCCCccceeeeceeec-CC-CCcccccCCCCCCCC----CeeEEEecCCCCEEEEEe-CCeEEEE
Q 001178 793 LWKWNRTEQNPSGKATAAVAPQHWQ-PS-NGLLMTNDVPENAED----VVPCVALSKNDSYVMSAG-GGKVSLF 859 (1131)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~-~~-~~~~~~~~~~~~~~~----~i~~l~~s~dg~~la~~~-dg~i~vw 859 (1131)
+|--. +++ +. +-.++-.....+|.. .|....|+|..-+|.+++ ||+|++|
T Consensus 676 Vfhg~-----------------VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGM-----------------VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeee-----------------eehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 76421 111 11 111111111223443 488899999999999988 8999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=196.54 Aligned_cols=288 Identities=14% Similarity=0.148 Sum_probs=205.3
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
...|+.+.++|.|.++|.....+.++.. ++ . ....|...|..+.|-|....|++++ |.+++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~---------------~l-k--~~~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEER---------------QL-K--KPLAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhh---------------hh-c--ccccccceeEeeccCCCceeEEEccCCceee
Confidence 3456667779999999876543331111 00 0 1115899999999999666777777 88999
Q ss_pred EEECCCceeEEE--EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001178 858 LFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE--------------------------- 908 (1131)
Q Consensus 858 vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~--------------------------- 908 (1131)
+||+++.++... +.+|.+.|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999999887 889999999999999899999999999999999986321
Q ss_pred eEEeecccccCeeE---EEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeee-e---ecCCC-CCCCCceEEEEcCCCcE
Q 001178 909 VKTKLKGHQKHITG---LAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIA-I---QLPAG-KLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~---l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~-~---~~~~~-~~~~~v~~v~~s~d~~~ 979 (1131)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+.+........ . ..+.. .....+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223356666666 667778899999998 9999999999855322211 1 11111 11245677777888888
Q ss_pred EEE-EeCCeEEEEeCCCcc--cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCC
Q 001178 980 LLV-NHETQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056 (1131)
Q Consensus 980 l~~-~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1056 (1131)
|++ +.|+.|++|++.+.. .+..+.++......| .-..|||+.+|++|+.|...++|.+.+.+.--.+..
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~------- 357 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL------- 357 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhh-------
Confidence 876 679999999998633 333333332212223 335799999999999999999999987654322211
Q ss_pred CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1057 SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1057 ~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
++.+.+.+|+|.|..-.-++++++|-++++|++..+
T Consensus 358 ----Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 358 ----GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 222444577888876677899999999999999644
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=182.27 Aligned_cols=302 Identities=18% Similarity=0.226 Sum_probs=215.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
...+|.++.|.+++...+|||+.|..|+||.++.++.-... ....-...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 45699999999988756999999999999999876543210 01112346889999999999999999999
Q ss_pred EEeCCCeEEEEEec--------C-----CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE
Q 001178 426 VAFTKHLIHLYTYQ--------G-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1131)
Q Consensus 426 s~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 491 (1131)
+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|+.+++|| ..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111233456789999999999999999 899999999999999 8999999
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-------------------CCC----ceEEEEE
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------------------APG----LWCTTML 548 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 548 (1131)
.+.+|...|..++|.|.. +++++-+.|...+.+.+...+...... .|. .-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999997644 788888888866666554332221110 011 1245678
Q ss_pred EccCCCEEEEEeecCCC-----CceEEEEeCCCC-eeeEEEecccCCceEEEEEeC------------------CCCEEE
Q 001178 549 YSADGSRLFSCGTSKEG-----DSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDT------------------TRNRIL 604 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~-----~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~------------------~~~~l~ 604 (1131)
|+|||.++++.+.--.- -+..++++...- ++...+.+... ....+.|+| .+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999876421010 223455553321 22222322222 233333332 223344
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++ .+.+++||.++-.++.....- |...|+.++|++||..++..+.||...+..++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 454 467999999988877665432 3348999999999999999999999888877655
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=185.05 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=192.3
Q ss_pred EEEEEEcC-------CCCEEEEEeCCCeEEEEEecCCCccceeee------------------eecCcCCeeEEEEecCC
Q 001178 412 VSRVAWSP-------DGNFIGVAFTKHLIHLYTYQGSNDLCQSLE------------------IDAHVGGVNDLAFSYPN 466 (1131)
Q Consensus 412 V~~~~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~V~~l~~s~d~ 466 (1131)
-.|++|.. -|+++|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 367999999999999999854322222222 23799999999999988
Q ss_pred CceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 467 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
+. .|+|||.|.+|++|| .+|++...+..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|.
T Consensus 256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE 333 (463)
T KOG0270|consen 256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE 333 (463)
T ss_pred ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence 77 899999999999999 8999999999999999999999854 47999999999999999985332221112234588
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
.++|.|.....+.++. .+|+++-+|++.. +++.++..|.+ .|.++++++.- .++++++.|+.+++|++......
T Consensus 334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 9999998777666654 3899999999874 89999998776 89999998765 47888999999999998764432
Q ss_pred EEEeccCCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCchhhhhh
Q 001178 624 TSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAI 671 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1131)
.............|.++.|+- ..++.|+..+.+++||+.+.....+.+
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence 222111122235666777754 466778888889999998875444433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=172.90 Aligned_cols=264 Identities=13% Similarity=0.232 Sum_probs=194.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+-|.|+.|.+-|++ +|+|+.|++|.|||.....-. |. .....+.|.+.|..+.|.+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~-------W~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGT-------WS--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCc-------eE--------EeeeEEecCCcEEEEEecCccccc
Confidence 48899999999999997 899999999999997543321 11 1123668999999999976 599
Q ss_pred EEEEEeCCCeEEEEEecC------CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce------
Q 001178 423 FIGVAFTKHLIHLYTYQG------SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK------ 489 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~------~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~------ 489 (1131)
.+|+++.|+++.||.-.. +..-....++......|+++.|.|....+.+++++.||.+|||+ ..--.
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999998632 11222334566677899999999988777999999999999999 33211
Q ss_pred eEEec-------CCccCeEEEeecccCCc-cEEEEEecC-----CeEEEEeCCCCce----eEEecCCCceEEEEEEccC
Q 001178 490 LFQFE-------GHEAPVYSVCPHQKENI-HFIFSTAVD-----GKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 490 ~~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~s~d-----g~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~ 552 (1131)
...+. .+..+..|+.|+++.-. .+|+.|+.+ +.++||....... ..++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 12222 46677889998865432 466666655 4889998766542 2356788899999999996
Q ss_pred C----CEEEEEeecCCCCceEEEEeCCCC--------------------eeeEEEecccCCceEEEEEeCCCCEEEEEEc
Q 001178 553 G----SRLFSCGTSKEGDSHLVEWNESEG--------------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGE 608 (1131)
Q Consensus 553 g----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 608 (1131)
- ..||+++. || |+||.+... +.+..+..|.. .|..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 45777765 77 999988631 12334555544 8999999999999999999
Q ss_pred CCcEEEEEcCC---CeEEEEEeccC
Q 001178 609 DNQIKFWDMDN---VNMLTSTEAEG 630 (1131)
Q Consensus 609 dg~i~iwd~~~---~~~~~~~~~~~ 630 (1131)
||.|++|...- .++...+...+
T Consensus 309 DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 309 DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CceeeehhhhhhhhheeeeEEeccC
Confidence 99999997653 23444444443
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=173.17 Aligned_cols=256 Identities=11% Similarity=0.166 Sum_probs=191.7
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
+-.+|.+-|.++.|.+.|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+..-...+++|+.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 345899999999999999999999999999999964433 3445556889999999999987532228999999999999
Q ss_pred EeC-C------C---ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE------Eec-------C
Q 001178 483 WDL-S------G---RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV------DYD-------A 539 (1131)
Q Consensus 483 wd~-~------~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~------~~~-------~ 539 (1131)
|.. . | ....++......|+.++|.|..-|-.+++++.||.+|||+.-...... ++. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 982 1 1 123556677889999999999999999999999999999865433222 111 2
Q ss_pred CCceEEEEEEccC---CCEEEEEeec-CCCCceEEEEeCCCC--e--eeEEEecccCCceEEEEEeCCC----CEEEEEE
Q 001178 540 PGLWCTTMLYSAD---GSRLFSCGTS-KEGDSHLVEWNESEG--A--LKRTYIGFRKKSAGVVQFDTTR----NRILAAG 607 (1131)
Q Consensus 540 ~~~~v~~~~~s~~---g~~l~~~~~~-~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~ 607 (1131)
+..+..|+.|+|. ..+|++++.+ ....+.++||....+ + .+..+.++.. +|+.++|.|+- ..|++++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEee
Confidence 3446788999874 4567777632 112346777765433 2 3445666555 99999999974 4788999
Q ss_pred cCCcEEEEEcCCCe-----------------EEEEE-eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 608 EDNQIKFWDMDNVN-----------------MLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.|| |+||++.... .+..+ ....|...|..+.|+-.|..|++.+.||.|++|..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999 9999987311 12222 23455668999999999999999999999999975
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=207.32 Aligned_cols=233 Identities=11% Similarity=0.198 Sum_probs=207.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
|...|.|+..-..++ ++++|+.|..+-+|.+..-..+. .+.+|..+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 888899998855665 79999999999999886543332 3679999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+|+.+|+|++||++.++.++ ++.||...+.+++|+|-+. ++++|+.|+.+++|| ....+.+.+.+|...|.++.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999987666 7899999999999999999 789999999999999 66889999999999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
|. ++|.++++++.|..+++||+..++....|..|...+.++.|+|..-+++.|+. +..+++||+++.+.+....
T Consensus 162 ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 95 56799999999999999999999999999999999999999999999999987 9999999999988887776
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
.... .|.+..|+|++..+++|....
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccC-CceeeeecCCceeeecCchhh
Confidence 6544 799999999999888876543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=199.10 Aligned_cols=297 Identities=13% Similarity=0.168 Sum_probs=222.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l 424 (1131)
-.....++...++-..++..| ...+.||.+....... ++.+.+-. -..-.-.+..++|+. +.++|
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlI 103 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLI 103 (839)
T ss_pred cccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhh
Confidence 345677777888876644444 3477788776543221 11111100 001112345678876 67899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
|+++..|.|.+||+.....-+....+..|+..|++++|++-..+ +|+|||.||+|++|| ...+...++.+....|..+
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred eeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 99999999999999773222333467899999999999998877 899999999999999 7777788888888999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
.|+|.. +.+++++.+.|.+++||++... ....+..|.++|.++.|+|++.+||+||. |+.|+|||..+++....
T Consensus 183 ~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 183 KFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPK 257 (839)
T ss_pred eeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccce
Confidence 999865 5899999999999999998754 44578899999999999999999999997 99999999987766555
Q ss_pred EecccCCceEEEEEeCCCC-EEEEEE--cCCcEEEEEcCCCe-EEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001178 583 YIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVN-MLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i~ 657 (1131)
..-+...++..+.|-|... +|++++ .|-.|+|||++..- +..++..|.. .++.++|.. |...+.+++.||++.
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecCccHHH
Confidence 5555666899999999876 455544 58899999997643 3444554443 788899966 456778888888876
Q ss_pred EEecCCC
Q 001178 658 ILANADG 664 (1131)
Q Consensus 658 iw~~~~~ 664 (1131)
.-.+.+.
T Consensus 336 qh~~kna 342 (839)
T KOG0269|consen 336 QHLFKNA 342 (839)
T ss_pred Hhhhhcc
Confidence 5554444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=176.12 Aligned_cols=250 Identities=18% Similarity=0.243 Sum_probs=188.2
Q ss_pred CCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCC----------------ceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMN----------------FKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
.|.+.+..+..++-|+-.++++ .|.|.||++.. .+.+.++.+|...=.+++|||-..-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4677777788777765555444 59999999852 3567788899988899999994344577
Q ss_pred EEeCCCcEEEEEeecceeE---EeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEVK---TKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+|.--+.|++|...++.-. ..+.+|...|-.|+|||. ...++|||-||+|+|||+..+........ ..+.+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~----kAh~sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST----KAHNSD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe----eccCCc
Confidence 8888899999999887432 346789999999999997 45799999999999999999754333333 223368
Q ss_pred ceEEEEcCCCcEEEEEe-CCeEEEEeCCC---cccceeeecCCCCCCCeEEEEEccC-CCEEEEEecCCcEEEEECCCCc
Q 001178 968 ETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCN-SQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~d-g~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
|..|.|+..-.+||+|. ||.++|||+++ ++.+..+.-| ..+|+++.|+|. ...|++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 99999999988888874 89999999986 5566666666 899999999984 5688888899999999986432
Q ss_pred e-----------eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1043 L-----------RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1043 ~-----------~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
- +..+.+.. +. .|.++...-.+.|+++-+.+|++.+.|| +.||..
T Consensus 382 D~ee~~~~a~~~L~dlPpQL-LF----VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfkt 437 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQL-LF----VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKT 437 (440)
T ss_pred ChhhhccccccchhcCCcee-EE----EecchhHhhhheeccCCCCeEEEecccc-eeEEEe
Confidence 2 11111111 11 1233444446899999999999999999 777753
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=207.62 Aligned_cols=251 Identities=16% Similarity=0.254 Sum_probs=202.7
Q ss_pred CCCEEEEEEcCCCCE----EEEEeCCCeEEEEEecC---CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 409 SISVSRVAWSPDGNF----IGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
....+.++|.+.|.. ||.|..||.|.+||... +.......+...|++.|..+.|++.... +|++|+.||.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence 457889999998775 89999999999999866 3334444567889999999999998876 899999999999
Q ss_pred EEeC-CCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEEEEEEccCCCEE
Q 001178 482 VWDL-SGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRL 556 (1131)
Q Consensus 482 iwd~-~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l 556 (1131)
|||. .-+.-..+. .....|.+++|+. ...++|++++.+|++.|||++..+.+..+..+.. .+..+.|+|++..-
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 9993 322222331 2456899999975 3447899999999999999999988887766554 57899999987554
Q ss_pred EEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+....+.+..-.|.+||++.. ..++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W 298 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--W 298 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--c
Confidence 444445677889999998764 45677777655 78899999877 7889999999999999999999999887554 7
Q ss_pred cceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 635 LPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..+.|.|... .+++++-||.|.|+.+...
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 89999999665 8888999999999998765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-16 Score=181.41 Aligned_cols=371 Identities=23% Similarity=0.402 Sum_probs=278.7
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEE-ecCCCceEEEE-EcCCCcEE
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAF-SYPNKQLCIVT-CGDDKLIR 481 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~-s~d~~~~~l~s-~s~d~~i~ 481 (1131)
...|...|.++.|.+++..++.++.|+.+.+|+...+. .....+.++. ..+..+.+ ++++.. .++. +..|+.++
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNS-ILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcce-EEeccCCCCccEE
Confidence 55789999999999999999999999999999998875 1222455533 37777777 777763 3444 44599999
Q ss_pred EEeCC--CceeEEecCCccCeEEEeecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEE
Q 001178 482 VWDLS--GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLF 557 (1131)
Q Consensus 482 iwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~ 557 (1131)
+||.. ......+..|...|..++|++.. ..+++++. |+.+++|+.........+..|...+.++.|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG--KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCC--CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99944 58888899999999999997654 57888875 99999999998777778888889999999999998 444
Q ss_pred EEeecCCCCceEEEEeCCCCeeeE-EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE-EEEEeccCCCCCc
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKR-TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSL 635 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i 635 (1131)
+++. ++.|.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... +... ..+...+
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 4344 8899999988888877 5777665 33 338999998899999999999999987664 4444 3334589
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
.++.|+|++..+++++.|+.+.+|+......... .
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------------~---------------- 322 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS-----------------------------L---------------- 322 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE-----------------------------e----------------
Confidence 9999999888888888898899997654410000 0
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
. .
T Consensus 323 ----------------------------------------------------------~------------~-------- 324 (466)
T COG2319 323 ----------------------------------------------------------T------------L-------- 324 (466)
T ss_pred ----------------------------------------------------------e------------e--------
Confidence 0 0
Q ss_pred ecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE-e-CCeEEEEECCCceeEEEEeCC
Q 001178 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA-G-GGKVSLFNMMNFKVMTTFMSP 873 (1131)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~ 873 (1131)
..|...+..+.+.+++..++.+ . ++.+.+|++............
T Consensus 325 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 325 ----------------------------------KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred ----------------------------------cccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 0123345555553232444444 3 677888888777633333222
Q ss_pred CCCeeEEEEeCCCCcEEEE-EeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 874 PPASTFLAFHPQDNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~-g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 371 -~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 371 -SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred -ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2288899998 6 55554 88999999999998887776665547899999999999999999999999999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=173.08 Aligned_cols=266 Identities=16% Similarity=0.241 Sum_probs=187.4
Q ss_pred ccceeeeccCCCcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccc-cccceeecccccccceeceeccCCCCCEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLV-SKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
|......+.|.+.|+-+.-++-|+ .+.|+-+..|.|.|||+...-... .-.+.+-+ +...+..++.+|...=..
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~ 216 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG 216 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence 444455567888888888888753 356667888999999985421110 00000000 111223367899999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---ce
Q 001178 415 VAWSPDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RK 489 (1131)
Q Consensus 415 ~~~spdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~ 489 (1131)
++|||-. -.|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|+|||.|++|+||| ..+ .+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence 9999932 25778888889999999987644334467889999999999998877 899999999999999 555 23
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceEEEEEEccCCCE-EEEEeecCCC
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADGSR-LFSCGTSKEG 565 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~ 565 (1131)
+. .+.|.+.|+.+.|+... .+|++|+.||+++|||++.. +....+..|..+|+++.|+|.... +++++.
T Consensus 296 ~~-~kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~---- 368 (440)
T KOG0302|consen 296 VS-TKAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE---- 368 (440)
T ss_pred eE-eeccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence 33 37899999999996544 48999999999999999864 455688899999999999996544 444443
Q ss_pred CceEEEEeCCCCee----------------eEEEecc-cCCceEEEEEeCCC-CEEEEEEcCCcEEEE
Q 001178 566 DSHLVEWNESEGAL----------------KRTYIGF-RKKSAGVVQFDTTR-NRILAAGEDNQIKFW 615 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~----------------~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 615 (1131)
|.+|.+||+....- .+.+..| -+..+.-+.|++.- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 89999999853111 0111112 11245567888765 4677777777 4444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-15 Score=178.92 Aligned_cols=289 Identities=27% Similarity=0.420 Sum_probs=219.2
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc-ccccccceeecccccccceeceeccCCC-CCEEEEEE-cC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE-RLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAW-SP 419 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~-sp 419 (1131)
...|...|.++.|.+.+. .++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ ++
T Consensus 61 ~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 120 (466)
T COG2319 61 LRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSSP 120 (466)
T ss_pred eeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEECC
Confidence 345899999999999998 57888889999999998876 222 122322 46777777 88
Q ss_pred CCC-EEEEEeC-CCeEEEEEecC-CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC-CCcEEEEe-CCCceeEEec
Q 001178 420 DGN-FIGVAFT-KHLIHLYTYQG-SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 420 dg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd-~~~~~~~~~~ 494 (1131)
++. .++..+. |+.+.+|+... .. ....+..|...|.+++|+|++. .+++++. |+.+++|+ ..+..+..+.
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeec
Confidence 888 5555444 99999999987 33 2335788999999999999999 6788875 99999999 6678888999
Q ss_pred CCccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 495 GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+|...|.+++|. +++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++. ++.+++|
T Consensus 196 ~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~ 268 (466)
T COG2319 196 GHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLW 268 (466)
T ss_pred cCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEe
Confidence 999999999997 4444 55556999999999888666655 566666654 3389999988887765 8999999
Q ss_pred eCCCCee-eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE-
Q 001178 573 NESEGAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT- 650 (1131)
Q Consensus 573 d~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~- 650 (1131)
+...... ...+.+| ...+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 269 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 269 DLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred eecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEee
Confidence 9987664 4444444 458999999998888888888999999999888766666522222257888883332455555
Q ss_pred ECCCcEEEEecCCC
Q 001178 651 TADQGIKILANADG 664 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~ 664 (1131)
..|+.+.+|+....
T Consensus 348 ~~d~~~~~~~~~~~ 361 (466)
T COG2319 348 SDDGTIRLWDLRTG 361 (466)
T ss_pred cCCCcEEeeecCCC
Confidence 56777777776543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-18 Score=166.22 Aligned_cols=408 Identities=13% Similarity=0.141 Sum_probs=248.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
-++|||+|+++|+++.- .+.|-|..+-+..+ +...-..|..+.|..|.-. .+.....|+.|.+|+ ..-+--.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999765 78888887754332 1122456888999998875 677778899999999 66666677
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+.....++.+++|+|++. .+|.+...|-+|.+|.+.+...... ......+..++|+|||++.+.++. .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 888888999999976432 5777888899999999987665442 334445789999999999998874 2222223333
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
..+.-.+++.+..... ..+.+.|+|||+.+++-.. +-.|+.|... -.+..++|+|.++++++|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~~--------------lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYERG--------------LGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeeec--------------cceeEEEeccccceEEee
Confidence 2233334445544333 4667899999988776432 2223322221 147889999999999999
Q ss_pred ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCC
Q 001178 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 730 (1131)
+.|+.+|+.+--+-. .+..+. |...+...... .+-...+++- .+
T Consensus 229 syD~~lrvlnh~tWk-~f~efl-hl~s~~dp~~~-----~~~ke~~~~~-----------------ql------------ 272 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWK-PFGEFL-HLCSYHDPTLH-----LLEKETFSIV-----------------QL------------ 272 (447)
T ss_pred ccchhhhhhceeeee-ehhhhc-cchhccCchhh-----hhhhhhcchh-----------------hh------------
Confidence 999999986643321 111110 00000000000 0000000000 00
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
. . | ++.|.|..-..-. +.. .-.+|.....
T Consensus 273 --------------~-------~------------~-----cLsf~p~~~~a~~-~~~-se~~YE~~~~----------- 301 (447)
T KOG4497|consen 273 --------------L-------H------------H-----CLSFTPTDLEAHI-WEE-SETIYEQQMT----------- 301 (447)
T ss_pred --------------c-------c------------c-----ccccCCCccccCc-ccc-chhhhhhhhc-----------
Confidence 0 0 0 0111111000000 000 0000000000
Q ss_pred eeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC---CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG---GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
.+.+ ..-+.. .+.+ .....+.-++||+|..++++-.| +.+-+||++..+....+. ...+|.+..|.| +.
T Consensus 302 -pv~~---~~lkp~-tD~p-nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 302 -PVKV---HKLKPP-TDFP-NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred -ceee---ecccCC-CCCC-CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 0000 000000 0111 23556778999999999999886 569999999877665554 356799999999 67
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcE
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQL 941 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v 941 (1131)
..|+.......+++|......++..-. ..-.|..+.|..+|..++-.+.|...
T Consensus 374 prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCceE
Confidence 777777777789999977655554432 33679999999999999999999743
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=177.07 Aligned_cols=215 Identities=16% Similarity=0.290 Sum_probs=170.8
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
++......++++++..+.++|||+.. +++.. ...+|...|+++.+.-...|||+++
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr-~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHR-FLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhh-hccCCcceeEEEEecCCcceeEEec
Confidence 33333447889999999999888643 12221 3346899999999999999999999
Q ss_pred -CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe-ecccccCeeEEEEccCC
Q 001178 853 -GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNL 929 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg 929 (1131)
.|.|.|-.+.++..-.+|.... ..|.-+.|+|....+|.+++.+|.|.+||+....++.. .+.|..+...++|+|..
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsn 220 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSN 220 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCc
Confidence 6889999999998888887553 45669999996677888999999999999987766654 47899999999999964
Q ss_pred -CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcc-cceeeecCC
Q 001178 930 -NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKME-CIRQWVPQD 1006 (1131)
Q Consensus 930 -~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~-~~~~~~~~~ 1006 (1131)
.+|++.|.|+.|.+||+...+....... ..+...++|+++|.+|++|. .|.|..||++..+ .+..+..|
T Consensus 221 e~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah- 292 (673)
T KOG4378|consen 221 EALLVSVGYDKKINIYDIRSQASTDRLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH- 292 (673)
T ss_pred cceEEEecccceEEEeecccccccceeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-
Confidence 5789999999999999987544333222 26789999999999999985 8999999999644 44555455
Q ss_pred CCCCCeEEEEEccCC
Q 001178 1007 VLSSPISSAAYSCNS 1021 (1131)
Q Consensus 1007 ~~~~~v~~i~~s~dg 1021 (1131)
...|++++|-+..
T Consensus 293 --~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 293 --DASVTRVAFQPSP 305 (673)
T ss_pred --ccceeEEEeeecc
Confidence 7789999998764
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.7e-18 Score=167.07 Aligned_cols=299 Identities=14% Similarity=0.202 Sum_probs=201.1
Q ss_pred CCccceEEEEeec----CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 765 DSASKVARLLYTN----SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 765 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
.|..+|..++|.+ +...+++......+.+|....+.. + +++.......+......++
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------i--------r~lq~y~D~d~~Esfytcs 96 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------I--------RLLQSYADEDHDESFYTCS 96 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------e--------eeeeeccCCCCCcceEEEE
Confidence 4677888888874 334455555556777776544210 0 0111111123566666777
Q ss_pred ecCCC----CEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee--
Q 001178 841 LSKND----SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-- 913 (1131)
Q Consensus 841 ~s~dg----~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-- 913 (1131)
|+-|- -++|+++ -|.|+|.|+.++++...+.+|...|..+.+.|++.+++++++.|.+|++|++++..++..+
T Consensus 97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred EEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 76543 3666666 7999999999999999999999999999999988899999999999999999999998886
Q ss_pred -cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-------------eecCCCC---------CCCCceE
Q 001178 914 -KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-------------IQLPAGK---------LPVGETR 970 (1131)
Q Consensus 914 -~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-------------~~~~~~~---------~~~~v~~ 970 (1131)
.||.+.|.++.|+.+|.+++|+|.|.++++|++...+-..... +..+..+ |...|.+
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 6799999999999999999999999999999998532111100 0000000 1112222
Q ss_pred EEEcCCCcEEEE-EeCCeEEEEeCC-CcccceeeecC----------CCCCCCeEEEEEc--cCCCEEEEEecCCcEEEE
Q 001178 971 VQFHSDQVRLLV-NHETQLAIYDGS-KMECIRQWVPQ----------DVLSSPISSAAYS--CNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 971 v~~s~d~~~l~~-~~d~~i~vwd~~-~~~~~~~~~~~----------~~~~~~v~~i~~s--~dg~~l~s~~~dg~i~vw 1036 (1131)
+.|- |.++++ +-++.|..|... -.+.+....+. ......|+-+.|+ +-+++||.|...|.|++|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 2222 345555 457899999872 22222221111 1114456666555 557899999999999999
Q ss_pred ECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1037 DADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1037 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
|++..+....-...+ +.+....-..+|+- |+.+|+..++|++|.=||.
T Consensus 335 dL~~~ep~~~ttl~~--------s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTH--------SKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ECCCCCCccCceEEe--------ccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 998776532111111 01112223566766 7889999999999999885
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=167.59 Aligned_cols=289 Identities=17% Similarity=0.254 Sum_probs=208.3
Q ss_pred cCCCcEEEEEEec----CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 345 HQGSSVVSMDFHP----FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 345 ~h~~~V~~~~fsp----dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
.|..+|..++|.+ +...++|+.+ ...+.||......-+. .+|...-..|......++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3889999999985 2223566665 3488899876533211 0122122357888889999875
Q ss_pred C----CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe--
Q 001178 421 G----NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1131)
Q Consensus 421 g----~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 493 (1131)
. -+||.|+.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ +++++|.|.+||+|| .+..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 388999999999999999987655 57899999999999999887 899999999999999 888888776
Q ss_pred -cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE----------------------------ecCCCceE
Q 001178 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD----------------------------YDAPGLWC 544 (1131)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----------------------------~~~~~~~v 544 (1131)
.+|.+.|.++.|+. ++.+|++++.|..+++|++...+-... ...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 47999999999965 557999999999999999884321110 01122222
Q ss_pred EEEEEccCCCEEEEEeecCCCCceEEEEeC-CCCee-------------eEEEecccCCceEE--EEEeCCCCEEEEEEc
Q 001178 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGAL-------------KRTYIGFRKKSAGV--VQFDTTRNRILAAGE 608 (1131)
Q Consensus 545 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~ 608 (1131)
.++.|- |+++++-+. ++.|..|.. +-++. +..+.- ....+.- .+|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccC
Confidence 233332 567777655 779999986 21211 122221 1113333 345566789999999
Q ss_pred CCcEEEEEcCCCeEE--EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 609 DNQIKFWDMDNVNML--TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 609 dg~i~iwd~~~~~~~--~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.|.+++||++..++. .++........|...+|+.||.+|+...+|++|.-||.
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999887653 33333444457899999999999999999999999985
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=175.51 Aligned_cols=294 Identities=17% Similarity=0.239 Sum_probs=209.8
Q ss_pred CccceEEEEeecCCc--eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC
Q 001178 766 SASKVARLLYTNSGI--GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK 843 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~ 843 (1131)
+..+|.+++|.|... .+++|...|.|-+||+.+.+...++.. +...|..+|.++.|+|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~--------------------~f~~hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY--------------------LFTPHSGPVSGLKFSP 244 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE--------------------EeccCCccccceEecC
Confidence 789999999999765 566666689999999964433333321 1125899999999999
Q ss_pred CCC-EEEEE-eCCeEEEEECCCceeE--EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee-EEeeccccc
Q 001178 844 NDS-YVMSA-GGGKVSLFNMMNFKVM--TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-KTKLKGHQK 918 (1131)
Q Consensus 844 dg~-~la~~-~dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~h~~ 918 (1131)
... .+.+. .||+|++-|++++..- ..+.........+.|+. +...++.|..=|...+||+.++.. ...+.-|..
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 553 44444 4999999999876443 33333455677888988 555566677777999999997654 667788999
Q ss_pred CeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCC--
Q 001178 919 HITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGS-- 994 (1131)
Q Consensus 919 ~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~-- 994 (1131)
.|++|+++|.. .+|||+|.|++++|||+..-.......+.... +...|.++.|||++..|++ +.|..|+|||..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence 99999999975 56999999999999999874443321222222 3368999999999887776 579999999984
Q ss_pred --CcccceeeecCCC-CCC--CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 995 --KMECIRQWVPQDV-LSS--PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 995 --~~~~~~~~~~~~~-~~~--~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
.......+ .|.. +.. ......|.||..++++|-.-..|-|+|-..+++++.+....... | +-..
T Consensus 402 sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t---------I-~~vn 470 (498)
T KOG4328|consen 402 SAKDEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST---------I-PSVN 470 (498)
T ss_pred cccCCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc---------c-ccce
Confidence 22222222 2221 112 23456899999999999999999999999999888865443211 1 2246
Q ss_pred EEcCCCCCeEEEEecCCcEEEEec
Q 001178 1070 TSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
.|||-+..+++-++.-|.|.||--
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred eecccccceeccCCccceEEEEec
Confidence 899976546666666778888854
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=177.99 Aligned_cols=209 Identities=14% Similarity=0.257 Sum_probs=169.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
+|++.|.+++|..+-+.+||+||.|.+|++||+.+|++.. ++..|++.|.+++|+| ...+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-------------------s~~~~~k~Vq~l~wh~~~p~~ 301 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-------------------SITHHGKKVQTLEWHPYEPSV 301 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-------------------ehhhcCCceeEEEecCCCceE
Confidence 5999999999999988899999999999999999999875 5778999999999999 5779
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~ 501 (1131)
|++|+.|++|.+.|++...+.... + .-.+.|..++|.|.... .++++..||+|+-+| ..++++.++..|.++|.
T Consensus 302 LLsGs~D~~V~l~D~R~~~~s~~~--w-k~~g~VEkv~w~~~se~-~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 302 LLSGSYDGTVALKDCRDPSNSGKE--W-KFDGEVEKVAWDPHSEN-SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred EEeccccceEEeeeccCccccCce--E-EeccceEEEEecCCCce-eEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 999999999999999853333322 2 23567999999998886 788889999999999 56799999999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCCCEEEE-EeecCCCCceEEEEeCCCCe
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFS-CGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~-~~~~~~~~~~i~iwd~~~~~ 578 (1131)
+++++.... .++++++.|+.|++|++......... ...-+...|.++.|+-.++++ ++. .+.+++||+.+..
T Consensus 378 gl~~n~~~p-~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~----k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 378 GLSVNIQTP-GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE----KAVLRVWDIFTNS 452 (463)
T ss_pred eEEecCCCC-cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCc----cceEEEeecccCh
Confidence 999986544 58999999999999998765553321 112234677788887665544 443 6689999988766
Q ss_pred eeE
Q 001178 579 LKR 581 (1131)
Q Consensus 579 ~~~ 581 (1131)
.++
T Consensus 453 ~V~ 455 (463)
T KOG0270|consen 453 PVR 455 (463)
T ss_pred hHH
Confidence 543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-17 Score=168.52 Aligned_cols=491 Identities=13% Similarity=0.131 Sum_probs=296.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-ec------CCCceEEEEEcCCCc
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-SY------PNKQLCIVTCGDDKL 479 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-s~------d~~~~~l~s~s~d~~ 479 (1131)
.|...|.|+.|+.+...+.+++++..+.-||+.+.+ .... .+. ...|....+ -+ .+.. .++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d-~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KLP--DDFVPTDMHLGGRSSGGGKGSD-TLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hCC--cccCCccccccccccCCCCCcc-eEEEEcCCce
Confidence 566778899999988877777655555555554432 2111 111 111111111 11 1112 6888999999
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+.|-+..++.-.....|.+.+.+-.|++ +|.-|++++.||.|++|.- ++-....+.....+|.|++|.|+.+.++.|
T Consensus 87 f~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 87 FVILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9999999998889999999999999965 5678999999999999974 333333455566789999999999988887
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
. .+.+.+=.+.....+-..+.|.+ .|.++.|++..+.+++|++|-..++||.. |..+..-..|.+ +|++++
T Consensus 164 ~-----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva 234 (737)
T KOG1524|consen 164 Q-----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVA 234 (737)
T ss_pred c-----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeee
Confidence 5 56777777766666666777655 89999999999999999999999999975 445554445554 899999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|+ ..+++++.+ ++++ +
T Consensus 235 ~npd-~~~~v~S~n-t~R~---~--------------------------------------------------------- 252 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARF---S--------------------------------------------------------- 252 (737)
T ss_pred eccc-cceeeeeee-eeee---c---------------------------------------------------------
Confidence 9999 666666543 3331 0
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeE-EeecC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKL-WKWNR 798 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~i-w~~~~ 798 (1131)
....+.|..++||+||..++.+...|.+.+ +-++.
T Consensus 253 --------------------------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq 288 (737)
T KOG1524|consen 253 --------------------------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ 288 (737)
T ss_pred --------------------------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh
Confidence 013467889999999999999999888755 33332
Q ss_pred CCCCCCCcc--ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC
Q 001178 799 TEQNPSGKA--TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 799 ~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
.-....++. .....+.+-+..++..-..+ ....+.. ++-.-.+|+++....|++|.-........+.+....
T Consensus 289 ~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE----~p~rv~k--~sL~Y~hLvvaTs~qvyiys~knwntpiiidgre~t 362 (737)
T KOG1524|consen 289 QLVSGNLKATSKSRKSITVRDVATGVQDILE----FPQRVVK--FSLGYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT 362 (737)
T ss_pred hhhhccceeEeeccceEEeehhhhhHHHHhh----Cccceee--eeeceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence 211111111 11113445555555443221 2334433 344556788888888999988776655555544433
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec--ccccC-e--eEEEEccCCCEEEEE--eCCCcEEEEEc-CC
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK--GHQKH-I--TGLAFSTNLNILVSS--GSDAQLIFWNT-DT 948 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~h~~~-V--~~l~~s~dg~~l~s~--~~Dg~v~lwd~-~~ 948 (1131)
+.-+.-+. ..++ ..+..+|.+|..+.. .....+ +..-+ . ..+....| .|+.- .....+.++|. .+
T Consensus 363 r~lieq~e--k~fl--i~dgsSi~lytyegR-~~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~ist 435 (737)
T KOG1524|consen 363 RNLIEQGE--KYFL--ILDGSSIWLYTYEGR-LHLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLIST 435 (737)
T ss_pred hhHhhhhh--hheE--EecCcEEEEEEecCc-eecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCC
Confidence 32222221 1222 234456777765432 222211 11100 0 12222222 33332 22345678887 55
Q ss_pred CceeeeeeeecCCCCCCCCceEEEE----cCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE
Q 001178 949 WEKRKSIAIQLPAGKLPVGETRVQF----HSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL 1023 (1131)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~v~~v~~----s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~ 1023 (1131)
++...--. .. .+...+..++. .++.+.++. -..+.+.|-.+++...-..+... ...|..++|+... -
T Consensus 436 gk~qgDgk--~L--~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawndtt-N 507 (737)
T KOG1524|consen 436 GKRQGDGK--SL--RHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWNDTT-N 507 (737)
T ss_pred CcccCCcc--cc--chhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhcccc-c
Confidence 44211110 00 01122333333 233444444 33566666666553333333222 4678889998544 4
Q ss_pred EEEEecCCcEEEEECCCC
Q 001178 1024 IYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~ 1041 (1131)
+++|-.|+.+.||-+...
T Consensus 508 iLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 508 ILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred eeeeeccceEEEEEcCCc
Confidence 677888999999988754
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=164.47 Aligned_cols=228 Identities=13% Similarity=0.153 Sum_probs=170.8
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeE
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1131)
|+..++++.+.+.-|.+||.-+++...... .+|.. ..-....+++|+|||.+|.+|...+|
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~--------~ydh~-----------de~taAhsL~Fs~DGeqlfaGykrci 181 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR--------AYDHQ-----------DEYTAAHSLQFSPDGEQLFAGYKRCI 181 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchh--------hhhhH-----------HhhhhheeEEecCCCCeEeecccceE
Confidence 566777788888888888765544332211 11110 01223468999999999999999999
Q ss_pred EEEEC-CCceeEE---EE----eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 857 SLFNM-MNFKVMT---TF----MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 857 ~vwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
++||+ ..|..-. ++ .+..+.|.+++|+|.+...+|+|+....+-||.-....++..+-+|.+.|+.+.|.+|
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence 99998 4443211 11 1235679999999988889999999999999999999999999999999999999999
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEE--EEcCCCcEEEEE-eCCeEEEEeCCC-cccceeee
Q 001178 929 LNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV--QFHSDQVRLLVN-HETQLAIYDGSK-MECIRQWV 1003 (1131)
Q Consensus 929 g~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s~d~~~l~~~-~d~~i~vwd~~~-~~~~~~~~ 1003 (1131)
|+.|.+|.. |-.|..||+..... ++-....+....-..| ...|++++|++| .+|.|++||+++ +..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 999999987 67899999987432 2222223322233344 446899999998 699999999998 66666666
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.+ +..++.+++.|--.++++++..
T Consensus 338 ~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 338 NY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc---cccccceecCcccceeeeccCc
Confidence 65 7899999999998888887743
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=166.78 Aligned_cols=298 Identities=17% Similarity=0.226 Sum_probs=219.9
Q ss_pred ccceEEEEeecCCc-eEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 767 ASKVARLLYTNSGI-GILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
..++..+.|.++.. .+++++.|..|++|.++.+.....+ ..+........|...|+++.|+|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeecccCCcceeEEEEEcCCc
Confidence 46778888888777 9999999999999998775443221 1122222334799999999999999
Q ss_pred CEEEEEe-CCeEEEEECC--------C--------ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 846 SYVMSAG-GGKVSLFNMM--------N--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
..||+|+ +|+|.+|-.. + +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|.
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce
Confidence 9999999 5889999765 2 344566778999999999999 99999999999999999999999
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee-----eecC------------CCCCCCCceEE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA-----IQLP------------AGKLPVGETRV 971 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~-----~~~~------------~~~~~~~v~~v 971 (1131)
....+.+|..-|..++|.|-++++++-+.|...+.+.+.......... .... +.........+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999999999999999877777766533222111 0000 01111345678
Q ss_pred EEcCCCcEEEEEe-----CCe-----EEEEeCCCc-ccceeeecCCCCCCCeEEEEEcc---------C--------CCE
Q 001178 972 QFHSDQVRLLVNH-----ETQ-----LAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSC---------N--------SQL 1023 (1131)
Q Consensus 972 ~~s~d~~~l~~~~-----d~~-----i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~---------d--------g~~ 1023 (1131)
+|+|||.+|++.. ++. .++|+-... +.+..+... ..+...+.|+| . -++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccce
Confidence 9999999999731 232 456655432 233333333 56777777776 1 123
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+++....+.|+|||.++...++.....+|.... +++|++ |+..|+..+.||-..+-.+..
T Consensus 314 vfaiAt~~svyvydtq~~~P~~~v~nihy~~iT-----------Diaws~-dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 314 VFAIATKNSVYVYDTQTLEPLAVVDNIHYSAIT-----------DIAWSD-DGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EEEEeecceEEEeccccccceEEEeeeeeeeec-----------ceeecC-CCcEEEEeccCCceEEEEEcc
Confidence 344445789999999999999998887766533 699999 788999999999766655543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=163.95 Aligned_cols=287 Identities=15% Similarity=0.206 Sum_probs=206.9
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc-------CCCC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS-------PDGN 422 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-------pdg~ 422 (1131)
...+.|||||.. +.+-+.|..+.+|++-..-......... ....+..+--.....|...+|- |+..
T Consensus 52 ~kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCce-EEeecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 346799999985 6777889999999985321111000000 0000111111234567777775 6778
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCC---eeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeE--Ee--
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGG---VNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLF--QF-- 493 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~---V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~--~~-- 493 (1131)
++|+.+.+.-|++||.-+|+... ......|... ..+++|+|||. .|+ ++..+.|+++| ..|+... ..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lra-Sy~~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRA-SYRAYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeecccccccc-chhhhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999988433 2233345543 46899999999 454 45578999999 4454321 11
Q ss_pred ---cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 494 ---EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
.+..+-+.+++|+|.. ...++.++.-.++-++.-........+.+|.+.|+.+.|.++|+.|++++. .+..|-
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 2346778899998854 468999999999999999999999999999999999999999999999875 477899
Q ss_pred EEeCCC-CeeeEEEecccCCceEEE--EEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 571 EWNESE-GALKRTYIGFRKKSAGVV--QFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 571 iwd~~~-~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999986 445556665544333333 4467889999999999999999998 666666655444 7899999999888
Q ss_pred EEEEECC
Q 001178 647 LVVTTAD 653 (1131)
Q Consensus 647 l~~~~~d 653 (1131)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8887654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-18 Score=173.64 Aligned_cols=275 Identities=11% Similarity=0.140 Sum_probs=202.0
Q ss_pred EEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCC
Q 001178 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGS 441 (1131)
Q Consensus 363 lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~ 441 (1131)
+|+++ .+++|||....+..... ......-.+.++.|+.... .+|+.+.|..|++|.-...
T Consensus 7 ~aS~g--d~~kl~D~s~~~~~~~~-----------------~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~ 67 (673)
T KOG4378|consen 7 VASTG--DKTKLSDFSDLETKSEY-----------------VHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK 67 (673)
T ss_pred eeccC--CceEEeecccccCcccc-----------------ccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC
Confidence 44443 48999998765543210 0111223499999998764 3334466788999975443
Q ss_pred Cc-cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEec
Q 001178 442 ND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV 519 (1131)
Q Consensus 442 ~~-~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 519 (1131)
.. +.......+. .-.|++...... ++++||..+.|+||| ....+.+.+++|...|+++.++..+ .+|++++.
T Consensus 68 ~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D--eyiAsvs~ 141 (673)
T KOG4378|consen 68 TPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD--EYIASVSD 141 (673)
T ss_pred CCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc--ceeEEecc
Confidence 11 1111122222 233444433334 899999999999999 5455567788999999999986543 79999999
Q ss_pred CCeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 520 DGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 520 dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.|.|.+..+.++.....+... +..|.-+.|++..++++.... .+|.|.+||.....++..+...|..+...+||+|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 999999999888777777655 456779999999888766543 2899999999988888777766777888899999
Q ss_pred CCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhh
Q 001178 599 TRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 599 ~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
... .|++.+.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||+......+
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 764 77789999999999999877766665433 68999999999999999999999999987654333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=168.21 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=187.5
Q ss_pred CEEEEEEcC-----CCCEEEEE---eCCCeEEEEEe-cCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 411 SVSRVAWSP-----DGNFIGVA---FTKHLIHLYTY-QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 411 ~V~~~~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
.|+..+|.. +.++||.. +..|...|--+ +.|+.-.....+.||+++|..++|+|-+.+ .++|||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555543 45666653 22233333332 234333333456899999999999997766 899999999999
Q ss_pred EEe-CCC-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC
Q 001178 482 VWD-LSG-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 482 iwd-~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
||. ..+ +.+..+.+|...|-.+.|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 322 34678899999999999999765 789999999999999999999999887 88899999999999
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE---cCCcEEEEEcCCCeEEEEEeccC
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
.++++++. |..|++||.++++.+..-.+|.+..-..+-|-.++..+-+|- .+..+-+||..+.+.-..+..-.
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD 261 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD 261 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec
Confidence 99999997 899999999999999888888776666677888888444432 47889999987654322222222
Q ss_pred CCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCc
Q 001178 631 GLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGL 665 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~ 665 (1131)
....|.---|.+|.++++.++ .|+.|+.|.+.+..
T Consensus 262 tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 262 TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 222466666788888876555 59999999997763
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-16 Score=169.63 Aligned_cols=633 Identities=12% Similarity=0.123 Sum_probs=363.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-----
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----- 420 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----- 420 (1131)
|...-.++.|+|.| ++|-|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457789999999 6888874 588999988877765 46678999999999873
Q ss_pred -C------CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec---CCCceEEEEEcCCCcEEEEe-CCCce
Q 001178 421 -G------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIRVWD-LSGRK 489 (1131)
Q Consensus 421 -g------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~iwd-~~~~~ 489 (1131)
+ -+||++...|.|.+||...+.... .+..|..+|..++|-+ +.+. +|+.-....++.+|+ .+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 267888888999999998876443 5778899999999976 3434 566666778999999 99999
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC------ceeEEecCC-Cc--------------------
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV------GSRVDYDAP-GL-------------------- 542 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~-~~-------------------- 542 (1131)
..+.........|+.+.|-...++.+ -+..|.+.+-+.-.. ...+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 88887767777888887765544444 444555555543211 111111111 00
Q ss_pred -----eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEE
Q 001178 543 -----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFW 615 (1131)
Q Consensus 543 -----~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw 615 (1131)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+.-+.+-|++ ..++++..||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123566776555554444 66799999988887777665444 55567777766 589999999999999
Q ss_pred EcCC----------------CeEEEEEeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecCCCchhhhhhhcccccc
Q 001178 616 DMDN----------------VNMLTSTEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANADGLRALRAIETRAYET 678 (1131)
Q Consensus 616 d~~~----------------~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 678 (1131)
-.+. ++....+..-....+ ......|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp-~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRP-VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhccc-ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 7654 222222222111111 22223343 44555666788888998876521111000000000
Q ss_pred ccccc--cccccCccceeccccccc--ccccccCCCCCCcccccc--CCCccccCCCCceeccccCCCCcceeeecccCC
Q 001178 679 SRAST--EMKVPGSAVVTTITPVLS--KAERVDRSSPARPSTILN--GADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1131)
Q Consensus 679 ~~~~~--~~~~~~~~~~~~~sp~~~--~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~ 752 (1131)
..... .....+.....++|-+.+ ....+.+..+...-.... .+.......-..++.|...|+|.++++....-.
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~ 460 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVA 460 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhh
Confidence 00000 000011111112222210 000011111111000000 011111112234678999999999998764321
Q ss_pred ceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc-CCCCC
Q 001178 753 LQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN-DVPEN 831 (1131)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~ 831 (1131)
.. ...|...|.++.|......+-.+.+. .. +........+.+-++.+|.-... .+++.
T Consensus 461 ~~--------fsvht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~ 519 (1062)
T KOG1912|consen 461 AS--------FSVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKP 519 (1062)
T ss_pred hh--------hcccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCC
Confidence 11 13488889999988766644443331 00 00111122345566677764432 23445
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEe-CC---------------CCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQ---------------DNNIIAIGM 894 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------~~~~la~g~ 894 (1131)
.+.+|+.+..|.-|+|++..- +.-+.+||+++..+++.....-.-++.+.|+ |. ..+..+..+
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds 599 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS 599 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc
Confidence 688999999999999999998 7779999999888777665544558899998 31 112233333
Q ss_pred CCCcEEEEEeec-------cee-EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC
Q 001178 895 EDSTIQIYNVRV-------DEV-KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1131)
Q Consensus 895 ~dg~I~iwd~~~-------~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 966 (1131)
+..+++.+.. +.. ....+...-.+..++|- +..|+.|..+|.+.+||+.....+.. ...+.. -.
T Consensus 600 --~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~--~d~p~~--ra 671 (1062)
T KOG1912|consen 600 --VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGV--RDSPDP--RA 671 (1062)
T ss_pred --ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCc--cCCCCc--hh
Confidence 2233333221 111 11111112234446664 66999999999999999876432221 111111 02
Q ss_pred CceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce
Q 001178 967 GETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
......+-|....+++-....+-+||.+....+..+.+... +..+..+.+......++. .|+.+++-.+.....
T Consensus 672 ~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-sfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 672 HSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-SFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSP 745 (1062)
T ss_pred hheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-ceEEEEEEecccCceecC--CCCceeEEeccccCC
Confidence 22233344544455566667789999998888888755421 344455555443333333 455777776665443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=197.46 Aligned_cols=276 Identities=13% Similarity=0.199 Sum_probs=210.8
Q ss_pred ccCCCCCcccccCCCccc----ceeeeccCCCcEEEEEEecCCCc---EEEEEcCCCeEEEEECCCC---ccccccccee
Q 001178 321 TYPVPSQQATWSLDDLPR----AVACTMHQGSSVVSMDFHPFHHT---LLVVGCGDGEITLWDVGLR---ERLVSKPFKI 390 (1131)
Q Consensus 321 ~~s~~~~~~~~~~~~~~~----~~~~~~~h~~~V~~~~fspdg~~---llasg~~dg~v~iwd~~~~---~~~~~~~~~~ 390 (1131)
.||.....-+|..+.... ..+..+.-..+-+.++|.+.|.. ++|.|..||.|.+||...- ....
T Consensus 34 sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~------ 107 (1049)
T KOG0307|consen 34 SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE------ 107 (1049)
T ss_pred ccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH------
Confidence 344444444444444322 34445566778999999998876 6999999999999998752 1110
Q ss_pred ecccccccceeceeccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeee--ecCcCCeeEEEEecCCC
Q 001178 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEI--DAHVGGVNDLAFSYPNK 467 (1131)
Q Consensus 391 ~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~--~~h~~~V~~l~~s~d~~ 467 (1131)
.......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+.-. .. ..-...|.+++|+..-.
T Consensus 108 ----------~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 108 ----------VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred ----------HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhh
Confidence 1114668999999999999765 99999999999999998744221 22 22456799999998877
Q ss_pred ceEEEEEcCCCcEEEEe-CCCceeEEecCCcc--CeEEEeecccCCccEEEEEecCC--eEEEEeCCCCcee-EEecCCC
Q 001178 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSR-VDYDAPG 541 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~-~~~~~~~ 541 (1131)
+ .|++++.+|.+.||| ...+.+..+..|.+ .+..+.|+|+...+++++..+|+ .|.+||++..... ..+..|.
T Consensus 175 h-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 175 H-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred H-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 6 799999999999999 55667777766654 47789999977644444444443 6999999876544 4567899
Q ss_pred ceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC
Q 001178 542 LWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 542 ~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 619 (1131)
..|.++.|++.+ ++|++++. |++|.+|+.++++.+..+.. .+..+..+.|+|... .+++++.||.|.|+.+..
T Consensus 254 ~GilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cceeeeccCCCCchhhhcccC----CCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 999999999976 88888887 99999999999999999887 444788899999876 778899999999999876
Q ss_pred Ce
Q 001178 620 VN 621 (1131)
Q Consensus 620 ~~ 621 (1131)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 54
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-18 Score=190.06 Aligned_cols=279 Identities=18% Similarity=0.274 Sum_probs=213.6
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+.++|-..|+|+.|...|++ +++|+.|..|+||..+++.++. ...||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhccchhh
Confidence 35679999999999999985 9999999999999999999886 477999999999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe----cC-C
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EG-H 496 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~-h 496 (1131)
.++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+... .. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999988665 68899999999999984 4788999999999442221111 11 1
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC-EEEEEeecCCCCceEEEEeCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
..-+.++.| ..++..++|++.|+.-..|...... .+...+.-+.++.|-. +.+++-. +..+++|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~----~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARN----DHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeee----eeEeeeeecc
Confidence 233444444 3455678899999988888654211 1111122222222322 2333322 7789999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
+|.+.+...+|.. .+..+.++|-...+ .+++.||...|||+..|.+++..... + ..+....|+++|..++....-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCC
Confidence 9999999888776 88899999977654 46899999999999999888776533 2 2678889999999999888889
Q ss_pred cEEEEecCCC
Q 001178 655 GIKILANADG 664 (1131)
Q Consensus 655 ~i~iw~~~~~ 664 (1131)
.+.|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9988876443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-17 Score=162.90 Aligned_cols=233 Identities=14% Similarity=0.246 Sum_probs=182.8
Q ss_pred eccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
...||+++|..++|+| +...||+||.|.+|.||.+..+.. ......+.||...|--++|+|.-.+ .|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5789999999999999 677999999999999999865432 2345678999999999999998877 799999999
Q ss_pred cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEEEEEEccCCCEE
Q 001178 479 LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCTTMLYSADGSRL 556 (1131)
Q Consensus 479 ~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l 556 (1131)
+|.+|| .+|+.+.++. |...|.+++|+ .+|.++++++.|+.||+||.++++....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 8999888887 99999999995 5678999999999999999999988887666654 456677888998 7
Q ss_pred EEEeecCCCCceEEEEeCCCCe---eeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeE-EEEEeccCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGA---LKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM-LTSTEAEGG 631 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 631 (1131)
++.+.++-.+.++-+||..+-. ....+. ....|.--.|.++.+.++.++ .|+.|+.|.+....+ ++.+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 7777777789999999976533 233333 233566667888888777654 699999999987653 233322222
Q ss_pred CCCcceEEEcCC
Q 001178 632 LPSLPRLRFNKE 643 (1131)
Q Consensus 632 ~~~i~~v~~sp~ 643 (1131)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223455666664
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-16 Score=164.79 Aligned_cols=273 Identities=15% Similarity=0.197 Sum_probs=190.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|...|.||.|+.+.. ++.++ .|..+.+|.-.+....... .+. ...++. ..|-++-. ..=-.....|
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~-----~~p--~df~pt---~~h~~~rs-~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVA-----KLP--DDFVPT---DMHLGGRS-SGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhh-----hCC--cccCCc---cccccccc-cCCCCCcceE
Confidence 4777889999999886 45544 5666666654333222100 000 000000 01100000 0000123478
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~ 504 (1131)
+.++.||.+.+-+-... ......+|.+.|.+-.|+|||. -|+|+|.||.|++|..+|-...++.....+|.|++
T Consensus 79 ~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred EEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEeccchHHHHHhhcCceeEEEE
Confidence 88899999888875442 1224789999999999999999 79999999999999988877777777788999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
|.|+.+ +.+++.+ +.+.+=-+...........|.+-|.++.|++..+.+++++. |-..++||.. |+.+..-.
T Consensus 153 W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S~ 224 (737)
T KOG1524|consen 153 WAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTSA 224 (737)
T ss_pred ECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccCC
Confidence 987654 4555544 45566566667778888999999999999999999999987 9999999965 55555544
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
. +..+|++++|.|+ ..++.++. +++++=. ...+.|..++||+||..+++|+..|.+.+=.
T Consensus 225 ~-~ey~ITSva~npd-~~~~v~S~-nt~R~~~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 225 A-EEYAITSVAFNPE-KDYLLWSY-NTARFSS-------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred h-hccceeeeeeccc-cceeeeee-eeeeecC-------------CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 4 3448999999999 55555543 3444211 1233789999999999999999999876643
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-16 Score=167.27 Aligned_cols=539 Identities=13% Similarity=0.152 Sum_probs=310.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC----------CCceEEEEEcCCCc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP----------NKQLCIVTCGDDKL 479 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d----------~~~~~l~s~s~d~~ 479 (1131)
..-.++.|+|.| +||.|+. ..|.|-|..+-+.+. .+.-|...|+.+.|.|- ..+++++++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346788999887 6777765 468888987765444 67789999999999873 23467888989999
Q ss_pred EEEEe-CCCceeEEecCCccCeEEEeecccCCc--cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCE
Q 001178 480 IRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI--HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSR 555 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 555 (1131)
|.+|| ..+..+..+..|..++..++|.+..+. ..|++-....++.+|+.++++.............++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99999 888888899999999999999876543 4677778889999999999999988877777777888888 4444
Q ss_pred EEEEeecCCCCceEEEEeCC-------CCeeeEEEecccC-----------C-----c--------eEEEEEeCCCCEEE
Q 001178 556 LFSCGTSKEGDSHLVEWNES-------EGALKRTYIGFRK-----------K-----S--------AGVVQFDTTRNRIL 604 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~-----~--------v~~~~~s~~~~~l~ 604 (1131)
+..-+. .|.+.+-+.- .|+..+.-..|.+ . + ....+|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444432 4444443321 1222222111111 0 0 01156788777677
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC--CCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccc
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK--EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1131)
.......+.++|++-..++.....+.+. +.-+.+-| ....|++.-.||.+.+|--......+..-.
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~---------- 314 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN---------- 314 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccc----------
Confidence 7777888999999999999888877663 44455555 456789999999999997543211111100
Q ss_pred ccccccCccceecccccccccccccCC-CCCCccccccCCCccccCC-CCceeccccCCCCcceeeecccCCceeEEEEc
Q 001178 683 TEMKVPGSAVVTTITPVLSKAERVDRS-SPARPSTILNGADSAARGI-EKPRNLEDISDKTKPWELTEIVDPLQCRVVAM 760 (1131)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~ 760 (1131)
+.++-+.+....+.+. ....+.. ....+. ...+..--.+|...+|++.+..-
T Consensus 315 -----------~~l~~dl~~Q~~~vr~m~~~rp~~------~~~cPs~~sa~avl~s~g~~~~w~l~~~ri--------- 368 (1062)
T KOG1912|consen 315 -----------ASLSMDLGEQVHVVRPMEEFRPVI------GASCPSTPSALAVLYSSGDSTFWQLSNGRI--------- 368 (1062)
T ss_pred -----------hhhccccccceEEEeechhcccce------eecCCCChhhhhhhhhcchhHHHhhhcCCc---------
Confidence 0111111111000000 0000000 000000 11122222334555555542100
Q ss_pred CCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 761 PESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 761 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
|... ...+++.-.-+ -..+....+... .+......++|.....+..
T Consensus 369 -----~~~~--~s~~iel~~pf--~f~~~~~~v~k~-------------------------~l~~LS~dg~h~sGs~~~~ 414 (1062)
T KOG1912|consen 369 -----HLDY--RSSSIELVLPF--DFNLSTKLVGKT-------------------------SLISLSDDGSHSSGSTCVR 414 (1062)
T ss_pred -----Cccc--ccccccccccc--cccCceeehhhc-------------------------cccchhhcCCCCCCceeee
Confidence 0000 00000000000 000000000000 0000011112333333322
Q ss_pred ec-----------CCCC-------EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE--------
Q 001178 841 LS-----------KNDS-------YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG-------- 893 (1131)
Q Consensus 841 ~s-----------~dg~-------~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g-------- 893 (1131)
.. |.|+ ++|.|. .|+|.++|+.++...+.+..|.+.|.++.|.. ...++-.+
T Consensus 415 ~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 415 MRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSAS 493 (1062)
T ss_pred cccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccc
Confidence 22 2222 566776 79999999999999999999999999999986 44444322
Q ss_pred -eCCCcEEEEEeecceeEE--ee-cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 894 -MEDSTIQIYNVRVDEVKT--KL-KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 894 -~~dg~I~iwd~~~~~~~~--~~-~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
..-+.+.+-|+.+|..+. .+ +....+|+.+..|.-|+||+..-.|.-+.+||+++......+.... .-++
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~------P~it 567 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLAL------PLIT 567 (1062)
T ss_pred cceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcC------CcEE
Confidence 222457778888875332 12 2356789999999999999999999999999998754333222211 2366
Q ss_pred EEEEc-CCCcEEE---------------EEeCCeEEEEeCCC-------cccceeeecCCCCCCCeEEEEEccCCCEEEE
Q 001178 970 RVQFH-SDQVRLL---------------VNHETQLAIYDGSK-------MECIRQWVPQDVLSSPISSAAYSCNSQLIYA 1026 (1131)
Q Consensus 970 ~v~~s-~d~~~l~---------------~~~d~~i~vwd~~~-------~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s 1026 (1131)
.+.|+ |.-.-+. +......+++.+.. +.....-..+ ....+..|+| .+..|+.
T Consensus 568 ~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~es--fafal~~mAw--k~d~lv~ 643 (1062)
T KOG1912|consen 568 VLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWES--FAFALCAMAW--KDDILVV 643 (1062)
T ss_pred EEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHH--HHHHHHhhhc--cCCeeEe
Confidence 77776 3222111 11112333333321 1111110000 0223334555 4668999
Q ss_pred EecCCcEEEEECCC
Q 001178 1027 TFTDGSIGVFDADS 1040 (1131)
Q Consensus 1027 ~~~dg~i~vwd~~~ 1040 (1131)
|+.+|.+.+||+..
T Consensus 644 GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 644 GDVEGNLVVWDLGR 657 (1062)
T ss_pred ecccCceeEEeccc
Confidence 99999999999753
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=173.12 Aligned_cols=293 Identities=17% Similarity=0.251 Sum_probs=226.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
.|.+.|+.|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 3999999999999998 699999999999999998887653 4569999999999988 456
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE---ecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ---FEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~---~~~h~~ 498 (1131)
.+++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.|++.|+.+.-.| ..+..... -..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887665555545567789999999999999887 799999999999999 44433222 222333
Q ss_pred ---CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee------EEec------CCCceEEEEEEccCCCEEEEEeecC
Q 001178 499 ---PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR------VDYD------APGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 499 ---~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
....++.+|... ..+++++.|..+++||.+..... ..+. .....|++++|+.++.-|++.-.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-- 356 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN-- 356 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec--
Confidence 456777776543 58999999999999997653322 1111 22336999999966655554443
Q ss_pred CCCceEEEEeCCC--C----------eeeE-EEecccCC-ceEEEE-EeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 564 EGDSHLVEWNESE--G----------ALKR-TYIGFRKK-SAGVVQ-FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 564 ~~~~~i~iwd~~~--~----------~~~~-~~~~~~~~-~v~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
+-.|+++.... | ..++ .|++|.+. .|..+- |.|...++++|++-|.|.||+-.+++.+..+..
T Consensus 357 --De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 --DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred --ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 77888885432 2 2233 37888664 344443 678889999999999999999999999998887
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..+ -|+|+.-+|.-.+||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 7999999999999999999999999987443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=176.00 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=188.0
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC-----CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-----SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~-----~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++..|.+.|..++|.|-...|++|+.||++++|+++. ...+.++.+|.+|.++|.|++..+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 5778999999999999999999999999999999932 334677889999999999999999999 799999999
Q ss_pred cEEEEeC-------CC----ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEE
Q 001178 479 LIRVWDL-------SG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCT 545 (1131)
Q Consensus 479 ~i~iwd~-------~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~ 545 (1131)
+|+.|+. +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+... ...-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999951 11 2335678999999999998766 4699999999999998866555 222222 12233
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
++.+....-.+..++. ..+.-.+.+...+..+..+.... ...+..+..+|...+.+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4444332211111111 02222333444444343333211 12355677889999999999999999999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++.....+.. .++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~~--svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHKD--SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeeccc--eecceeecCCCceEEeecCCceeehhhccch
Confidence 999988776654 7999999999999999999999999998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=174.27 Aligned_cols=263 Identities=13% Similarity=0.222 Sum_probs=188.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|.|-.. .|++++.||++.+|++.....-.. ....+..++.+|.++|.|+++++++..+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~-----------~~~epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAE-----------KDVEPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccc-----------cceeeeEEEecccCceEEEEecCCceEE
Confidence 4999999999999887 699999999999999943211111 1112334688999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCC-------ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC--
Q 001178 425 GVAFTKHLIHLYTYQGSN-------DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-- 495 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~-------~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-- 495 (1131)
.+|+.||+|+.|++.... .......+.||++.|+.+++++... .|++|+.||++++|+..+....++..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccCCcc
Confidence 999999999999664211 1122235789999999999999888 69999999999999944333344432
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------CceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
..+...++.+..+.- ...++...-+.-.+.+.+.......+... ...+..+...|.+...+++.. ++.
T Consensus 438 e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----DRS 512 (577)
T ss_pred ccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----CCc
Confidence 223334555432221 12222222222223333333333322211 124677888899988888876 899
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
|+++|..++.++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++....
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 99999999999999888776 89999999999999999999999999997766655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=157.28 Aligned_cols=295 Identities=12% Similarity=0.156 Sum_probs=207.7
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc-ccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
.++|.+.|+++.||.+|+ +||+|+.|..++||+++..-..+. +++.+ .-..|...|.|++|....
T Consensus 52 ~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccCC
Confidence 457999999999999998 699999999999999875333221 11111 234567899999999999
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc-ee--EEecCCc
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR-KL--FQFEGHE 497 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~-~~--~~~~~h~ 497 (1131)
++|.+|..+++|+..|+++.+.+... .-....+.|..+..+|-.+ .+++.+.++.|.+|| .... .+ ..+....
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 99999999999999999997655311 1122334899999999977 799999999999999 3222 22 2222334
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
.....+-|+|... .+|++.+..+-+-+||.+....... +......-.++.|+|+|+.+++.-. ...-.
T Consensus 195 ~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~ 269 (609)
T KOG4227|consen 195 KNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPL 269 (609)
T ss_pred ccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCE
Confidence 4566777887544 6888999999999999886543321 1111222367889999999988653 33445
Q ss_pred EEeCCCCee-eEEEecccC-----CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC----------e-------------
Q 001178 571 EWNESEGAL-KRTYIGFRK-----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV----------N------------- 621 (1131)
Q Consensus 571 iwd~~~~~~-~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------~------------- 621 (1131)
+||+-+.++ +..+....+ ..+.+++|..+- .+++|+.+-.|++|.+... .
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 677665333 223321111 135567777554 4999999999999987531 1
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
.+..+.+| ..-++.+.|+|...+|++.+-.+.++||...
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12334443 4467899999999999999999999999753
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-15 Score=150.39 Aligned_cols=377 Identities=12% Similarity=0.157 Sum_probs=240.7
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE-EEcCCcEEEEEcCCCeEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 624 (1131)
-..|||+|+++|+++ +.++.+-|..+-+..+.|.... .|.-+.|..+.-++++ ...++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 367999999999997 5689999988877766555422 4666788888877776 5678899999998877766
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEE-EECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVV-TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
.+... ...+.+++|||||+.+.. ..-+-.|.+|.+.+...
T Consensus 86 kIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~------------------------------------- 126 (447)
T KOG4497|consen 86 KIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG------------------------------------- 126 (447)
T ss_pred EeccC--CCcceeeeECCCcceEeeeecceeEEEEEEecccee-------------------------------------
Confidence 66543 347899999999966554 45588999999876510
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
..+.. ....+..++|.|||++.+
T Consensus 127 ----------------------------------------------------~~~~~-----pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 127 ----------------------------------------------------YLLPH-----PKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred ----------------------------------------------------EEecc-----cccCceeEEECCCCceee
Confidence 00000 123446789999999887
Q ss_pred EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEE
Q 001178 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFN 860 (1131)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd 860 (1131)
..+.-.....+++. ..+-|.+-.. +. -..-..+.+.|+|||..||+-. +-+|..|.
T Consensus 150 i~sRrDCkdyv~i~--------------~c~~W~ll~~------f~-~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 150 ILSRRDCKDYVQIS--------------SCKAWILLKE------FK-LDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred eeecccHHHHHHHH--------------hhHHHHHHHh------cC-CCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 76652111111100 0111221110 00 1244567799999999988754 23333333
Q ss_pred CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC--------------------e
Q 001178 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH--------------------I 920 (1131)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~--------------------V 920 (1131)
. .-.+..++|+| .+++||+|+.|+.+++.+--+.+....+- |-.. .
T Consensus 209 ~------------~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 209 R------------GLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred e------------ccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcc
Confidence 2 23578899999 99999999999999998876665544332 2111 1
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeee--ee--cC---CCCCCCCceEEEEcCCCcEEEEEeC---CeEE
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDTWE-KRKSIA--IQ--LP---AGKLPVGETRVQFHSDQVRLLVNHE---TQLA 989 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~-~~~~~~--~~--~~---~~~~~~~v~~v~~s~d~~~l~~~~d---~~i~ 989 (1131)
.++.|.|. |-...+|..+... .....+ ++ .+ .....-.+..++|++|..++++-.| +.+.
T Consensus 275 ~cLsf~p~---------~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 275 HCLSFTPT---------DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred cccccCCC---------ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 23444432 2222333322100 000000 00 00 0011246778999999999999654 5799
Q ss_pred EEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 990 vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
+||+...+.-..+.. ..+|.+..|.|....|+.......+++|....-..++. .... -....+
T Consensus 346 ~Wdlq~l~l~avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~G------------F~i~~l 408 (447)
T KOG4497|consen 346 LWDLQNLKLHAVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKG------------FNIQKL 408 (447)
T ss_pred EEechhhhhhhhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCC------------ceeeeE
Confidence 999998887766654 46999999999988888887788899998765333322 2111 123358
Q ss_pred EEcCCCCCeEEEEecCCc
Q 001178 1070 TSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~ 1087 (1131)
+|+- ++..++..+.|.-
T Consensus 409 ~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 409 QWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred EecC-CCcEEEEEcCCce
Confidence 8887 5678888888873
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=155.16 Aligned_cols=272 Identities=13% Similarity=0.159 Sum_probs=192.7
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEec
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQ 439 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las~~~d~~i~vwd~~ 439 (1131)
.+|++...|.|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58889999999999999988776 3678888999999988 46689999999999999999
Q ss_pred CCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEc----CCCcEEEEe-CCCce-eEE-ecCCccCeEEEeecccCCc
Q 001178 440 GSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG----DDKLIRVWD-LSGRK-LFQ-FEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 440 ~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s----~d~~i~iwd-~~~~~-~~~-~~~h~~~v~~~~~~~~~~~ 511 (1131)
+.....+. .+.+|. .+..+++..-.++ .+++|. .|-.|.+|| ...+. +.. ...|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87654433 355565 4667777765666 566664 467899999 44333 444 457999999999999654
Q ss_pred cEEEEEecCCeEEEEeCCCCcee---EEecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
++|++||.||.|.++|+...... .....+...|..+.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765322 2333456679999999887 34555554 7789999999887654443221
Q ss_pred C------------CceEEEEEeC-CCCEEEEEEc-CCcEEEEEcC---CCe---EEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 588 K------------KSAGVVQFDT-TRNRILAAGE-DNQIKFWDMD---NVN---MLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 588 ~------------~~v~~~~~s~-~~~~l~~~~~-dg~i~iwd~~---~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
- ..|. +.+| ++...+.++. -|...++-+. ++. .+..+.. ++..-|.++.|...+.++
T Consensus 255 ~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVL 331 (376)
T ss_pred chhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhccccee
Confidence 0 0111 1223 3344554443 5666665443 232 2233332 244467889998889999
Q ss_pred EEEECCCcEEEEecCC
Q 001178 648 VVTTADQGIKILANAD 663 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~ 663 (1131)
.+|+.||.+.+|...+
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-15 Score=139.63 Aligned_cols=284 Identities=12% Similarity=0.142 Sum_probs=197.9
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCC---CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRT---EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
..|.+-+++|.+++++++..+|.|.++.+..- +..+.++ ..... ..+|..++..++|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk----------------~~iv~-eqahdgpiy~~~f~-- 71 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK----------------LKIVP-EQAHDGPIYYLAFH-- 71 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC----------------cceee-ccccCCCeeeeeee--
Confidence 34556688999999999999999999987642 2222222 11111 13799999999998
Q ss_pred CCEEEEEeCCeEEEEECCCcee----E--EEEe-------CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKV----M--TTFM-------SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~----~--~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+|++++||.|+=|....... . .+.. ..-..|+++-..|..+.++. ++.|+.++-||+++|+...
T Consensus 72 d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEE
Confidence 5678889999999987643211 1 1111 12356899999995555555 4589999999999999999
Q ss_pred eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC----CCCCCCceEEEEcCCCcEEEEEeCCe
Q 001178 912 KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA----GKLPVGETRVQFHSDQVRLLVNHETQ 987 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~----~~~~~~v~~v~~s~d~~~l~~~~d~~ 987 (1131)
.++||++-|.++.--.....+.||++||++++||.++++........... .+....| .+..-+..+|++|....
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK 228 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence 99999999999998556668999999999999999998865543322111 1111223 34445666899999999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccE
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPL 1067 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1067 (1131)
+.+|.++..++...+... .++..+.|- .+.++++++.+.|.-|.+. |.+...+...+. ..+..
T Consensus 229 lslwhLrsse~t~vfpip----a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~----------~c~s~ 291 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIP----ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST----------ACYSA 291 (325)
T ss_pred eeEEeccCCCceEEEecc----cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc----------ceeee
Confidence 999999999988887654 688888886 4468888888899999875 444444433221 11222
Q ss_pred EEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1068 VVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1068 ~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.+.-+| -.++..+|..+.+.|+.
T Consensus 292 s~~~~p--~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSP--IKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCc--eEEEEecccceeeeeee
Confidence 233233 24666777777777654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=156.66 Aligned_cols=292 Identities=14% Similarity=0.171 Sum_probs=198.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCC-ceEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APG-LWCT 545 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~-~~v~ 545 (1131)
.++++-..|.|++|| .+|+.+..++++...++.+.|........+++++.||+|++||++.......+. .+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 678888899999999 889999999999999999999875566789999999999999999876655433 333 3566
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCee-eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCe--
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVN-- 621 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-- 621 (1131)
+++.+-.++.++++..-...+..+.+||++..+. ++.+...|...|++++|+|.. +.|++|+.||-+.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777667888888765555688999999998765 666665556699999999976 689999999999999997643
Q ss_pred --EEEEEeccCCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 622 --MLTSTEAEGGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 622 --~~~~~~~~~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
++.++. +...|..+.|..++ +.+.+-+...+..+|+++.+..... +.......... .-.......+-..+|
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~-~~~~~~~~~d~--r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW-LENPDVSADDL--RKEDNCDYVINEHSP 275 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc-ccCccchhhhH--HhhhhhhheeecccC
Confidence 222222 22368899998876 4588888999999999988842222 11110000000 000000000001111
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceec-cccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeec
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNL-EDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1131)
. +....+. ++..+...++.+................ .+|..-|+++.|..
T Consensus 276 ~----------------------------~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 276 G----------------------------DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDV 326 (376)
T ss_pred C----------------------------CcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhc
Confidence 1 1222222 3324555665555322222222222222 44777788899999
Q ss_pred CCceEEEeeecceeeEEee
Q 001178 778 SGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~ 796 (1131)
.+..+.+++.||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=150.61 Aligned_cols=212 Identities=21% Similarity=0.364 Sum_probs=160.7
Q ss_pred ceeeecc--CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 339 AVACTMH--QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 339 ~~~~~~~--h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
+++..+. +-+.|.|+.|.|++.. +|+- .|..|.+|++..+..+.. .+ ....-.+|....++-+
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~k-lasm-~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~ 177 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDK-LASM-DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGA 177 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCe-eEEe-ccCceEEEEcccCcchhe-ee------------cccccccccceecccc
Confidence 4444443 5569999999999987 4433 389999999998776421 11 0111224677889999
Q ss_pred EcC--CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEE
Q 001178 417 WSP--DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ 492 (1131)
Q Consensus 417 ~sp--dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~ 492 (1131)
||| ||..+++. .|+++..||+++.++...+ -.+|...|.++.|+|+-+. +|+||++||.|+||| .+..++.+
T Consensus 178 WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 178 WSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred cCCCCccceEEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccc
Confidence 999 88888876 5789999999987654432 3578889999999999887 899999999999999 66778999
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-----------------------------ceeEEecCCCce
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-----------------------------GSRVDYDAPGLW 543 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------------------------~~~~~~~~~~~~ 543 (1131)
+.+|...|+++.|++..+ ++|++++.|..|.+|....- +.+..+..|...
T Consensus 254 l~~HsHWvW~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS 332 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS 332 (370)
T ss_pred cCCCceEEEEEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc
Confidence 999999999999998766 79999999999999954321 112245567778
Q ss_pred EEEEEEccCCCEE-EEEeecCCCCceEEEEeC
Q 001178 544 CTTMLYSADGSRL-FSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 544 v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~ 574 (1131)
|.+++|+.-..++ |+-+. ||++.|=.+
T Consensus 333 VY~~aWSsadPWiFASLSY----DGRviIs~V 360 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSY----DGRVIISSV 360 (370)
T ss_pred eEEEeeccCCCeeEEEecc----CceEEeecC
Confidence 9999998766554 45554 777776554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=164.31 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=161.6
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEEEeecccCCccEEEEEecCCeEEE
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 525 (1131)
.++.||++-|++++|+.||. +|+|||+|-.+.||| ..-+.+..+ .||.+.|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36899999999999999999 899999999999999 777777665 48999999999999998899999999999999
Q ss_pred EeCCCC----------ceeEEecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeE----------EEe
Q 001178 526 WLYDNV----------GSRVDYDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKR----------TYI 584 (1131)
Q Consensus 526 wd~~~~----------~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~ 584 (1131)
+|+... .....+..|...|..++..|++ ..+.+++. ||+|+-+|++...... .+.
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE----DGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE----DGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC----CcceeeecccCCccCCccccccHHHHHhc
Confidence 999852 2233455677788999999998 66777776 9999999998642211 111
Q ss_pred cccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC--------Ce----------EEEEEe-ccC-C--------CCCc
Q 001178 585 GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN--------VN----------MLTSTE-AEG-G--------LPSL 635 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~-~--------~~~i 635 (1131)
..- -...++.++|... +|++|+.|-..++||.+. +. ++..+. .+- . ...+
T Consensus 198 ~~l-ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 198 PQL-IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhh-heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 111 1456788999764 788899999999999421 11 111111 110 0 0124
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCCCchhhh
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANADGLRALR 669 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~ 669 (1131)
+.++|+|+|.-|.+.-..-.|+++++..++....
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 5688999998888877777999999988754443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=151.52 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=196.1
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~ 423 (1131)
.|.+.|+|+.|-.+++ |.+|..-|.|++|++.+.+... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh--hhcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 5999999999999986 7889999999999999876554 233 56778999988887 56
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-----CCce--EEEEEcCCCc-EEEEe-CCCceeEEe-
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-----NKQL--CIVTCGDDKL-IRVWD-LSGRKLFQF- 493 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-----~~~~--~l~s~s~d~~-i~iwd-~~~~~~~~~- 493 (1131)
|.+-+.|..+.+|++..+..+ ..|.-.++++-|.+- ++.. .++.-+.... +.+-| -....+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 778889999999999875432 234445566666542 1110 1111111000 11222 111111111
Q ss_pred ---cCCccCeEEEeecccCCc-cEEEEEecCCeEEEEeCCCCceeE----------EecCCCceEEEEEEccCCCEEEEE
Q 001178 494 ---EGHEAPVYSVCPHQKENI-HFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 494 ---~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
.+..+.+.+..+...... -++++|-.+|.+.+||+.++.... ....|..+|.++.|.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 133455666654332222 356678899999999999874443 334566789999998765555555
Q ss_pred eecCCCCceEEEEeCCC--Cee-eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 560 GTSKEGDSHLVEWNESE--GAL-KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
+. +-.+..|++.. +.+ ++......+..+..+.+-||++.+++++.|++||||+.++..++..+..|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 55677777653 322 2222222344688899999999999999999999999999999999998874 899
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEec
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+++|+|+..++|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999985
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=161.47 Aligned_cols=201 Identities=11% Similarity=0.144 Sum_probs=130.7
Q ss_pred eeEEEecCCCCEEEEEe--CCeEEEEECCC-ce---eEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeecce
Q 001178 836 VPCVALSKNDSYVMSAG--GGKVSLFNMMN-FK---VMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~ 908 (1131)
...++|+|+|+++++++ ++.|.+|++.+ +. .+..+. +.....+++++| +++++ ++...++.|.+||+.+..
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCC
Confidence 34678888888887776 67888888863 21 222222 224467789999 66655 555667999999997633
Q ss_pred eEE-------eecccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCC--Cceeeeeeeec-CCC-CCCCCceEEEEcCC
Q 001178 909 VKT-------KLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDT--WEKRKSIAIQL-PAG-KLPVGETRVQFHSD 976 (1131)
Q Consensus 909 ~~~-------~~~~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~--~~~~~~~~~~~-~~~-~~~~~v~~v~~s~d 976 (1131)
.+. .... ......++|+|||++++++.. +++|.+|+++. ++......+.. +.. ........+.++|+
T Consensus 160 ~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 1111 234578999999999988876 89999999974 22211111111 111 11123346899999
Q ss_pred CcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECC
Q 001178 977 QVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDAD 1039 (1131)
Q Consensus 977 ~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~ 1039 (1131)
+++++++. ++.|.+|++........+..+..-......++|+|||++|+++.. +++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999873 678999998653321222221110234567899999999998885 8999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=147.54 Aligned_cols=183 Identities=14% Similarity=0.233 Sum_probs=128.6
Q ss_pred eeEEEecC--CCCEEEEEeCCeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeEE
Q 001178 836 VPCVALSK--NDSYVMSAGGGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVKT 911 (1131)
Q Consensus 836 i~~l~~s~--dg~~la~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~~ 911 (1131)
.++-+||| ||..+++.+|+++..||+.+..+...+. .|...|..+.|.|+...+||+++.||.|+|||.+. ..++.
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 33446665 8999999999999999999887776665 68889999999996667899999999999999974 56788
Q ss_pred eecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 912 KLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
.+.+|...|+++.|+|. .+++.++|.|..|.+|...+-.............. .++ .+..=++
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese----------~e~-------~dseer~ 315 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE----------SED-------EDSEERV 315 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc----------Ccc-------hhhHHhc
Confidence 99999999999999996 56788999999999998766222111111000000 000 0000000
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEecCCcEEEEECC
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~~dg~i~vwd~~ 1039 (1131)
=-+.. ..+..+..| ...|++++||.-.. .+|+-+.||.+.|=.+.
T Consensus 316 kpL~d-g~l~tydeh---EDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQD-GQLETYDEH---EDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccc-ccccccccc---ccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 01111 122333333 88999999998666 55666789999886654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-16 Score=148.52 Aligned_cols=307 Identities=14% Similarity=0.175 Sum_probs=198.5
Q ss_pred eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 534 RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.+.+..+...++++.|..+++ |+++.. .|.+.+|++++.+....+..+....++.+..-|+ ..+.+-+.|+.+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEE
Confidence 344556777899999998887 556554 8999999999998888888777768888888886 6788899999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC-cEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ-GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+|++..+..+..-.. .++++-|.+-. +...+... .+..++.+.. ...+...+...
T Consensus 81 lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgs-de~h~~D~g~~---------------- 136 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGS-DETHKQDGGDT---------------- 136 (323)
T ss_pred EEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCccc-chhhhhccCcc----------------
Confidence 999987665543321 34444444321 11111111 1111111111 00000000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
-.+++-+-. .....+.+.+
T Consensus 137 ----------------------------------------------tqv~i~dd~---------------~~~Klgsvmc 155 (323)
T KOG0322|consen 137 ----------------------------------------------TQVQIADDS---------------ERSKLGSVMC 155 (323)
T ss_pred ----------------------------------------------ceeEccCch---------------hccccCceee
Confidence 000000000 0112233333
Q ss_pred EEeec-CC--ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 773 LLYTN-SG--IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 773 l~~s~-~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
..+.. ++ -.+++|..+|.+.+||++.+....+-. ..|... . .. ..|..++.++.+.+.-..=+
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv~-----~-~~-ash~qpvlsldyas~~~rGi 221 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKVE-----S-PN-ASHKQPVLSLDYASSCDRGI 221 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------cccccc-----c-ch-hhccCcceeeeechhhcCCc
Confidence 33221 12 245667779999999998752211111 111111 1 11 15899999999987655555
Q ss_pred EEe-CCeEEEEECCC--ce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 850 SAG-GGKVSLFNMMN--FK--VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 850 ~~~-dg~i~vwd~~~--~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+|+ +..+..|+++. +. ...+.......|..+.+-| |++++|++++|+.|+||+.++..++..++.|.+.|.+++
T Consensus 222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 666 67788888763 22 2233334456788999999 999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEc
Q 001178 925 FSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
|+||...+|.++.|++|-+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-17 Score=178.18 Aligned_cols=237 Identities=17% Similarity=0.251 Sum_probs=185.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|...|.|++|...|.++++|++|..++||..+++.++. ...||.+.|+.++.+.+.. +++++|.|..|++|.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVWR 260 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEEe
Confidence 66999999999999999999999999999999999988776 7899999999999998877 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE---e-cCCCceEEEEEEccCCCEEEEE
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD---Y-DAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~---~-~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-...... . .....-+.++.|...+..++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 8999999999999999999998744 788999999999882111111 0 1122357778888888888888
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
+. ++.-..|....- ..+.. .+.-+.++.+- .+.+++-.+-.+.+|++.+|...+.+..+.+ .+..+
T Consensus 335 s~----d~ea~n~e~~~l------~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvL 401 (1113)
T KOG0644|consen 335 SR----DGEARNHEFEQL------AWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVL 401 (1113)
T ss_pred cC----CcccccchhhHh------hhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeee
Confidence 76 555555543321 11111 11112222222 4667777888999999999999988887766 78899
Q ss_pred EEcC-CCCEEEEEECCCcEEEEecCCCc
Q 001178 639 RFNK-EGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 639 ~~sp-~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.++| +.+...+++.||...|||+..+.
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCC
Confidence 9999 55566788999999999997773
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-14 Score=136.27 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=190.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|.+-++||.++ +|+.|..+|.|.+..+++--.-... .......-...+|.++|..++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~---------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAE---------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccC---------CCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 355567899998 5889999999999998652211100 00000111347999999999998 45677665
Q ss_pred CCCeEEEEEecCCCc---ccee--eeeecCc-----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 429 TKHLIHLYTYQGSND---LCQS--LEIDAHV-----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~---~~~~--~~~~~h~-----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
||.|+-|....... .+.. .....|. -.|+++-..|... -++.++.|+.++-|| .+|+...+++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998754322 0100 0112233 3588999998877 466677899999999 9999999999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC----------CceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP----------GLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
+.|.++.--. ....+++|+.||++|+||.++.+....+... +.+|.+++. +..++++++ ..
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-----CC
Confidence 9999997532 2247899999999999999998877655432 234555554 566888876 66
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC-CE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NL 646 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~ 646 (1131)
.+.+|.++..++...|.-. ..+..+.|. .+.+++++..+.+.-|.+. |......+...+ ..++..++... ++
T Consensus 228 ~lslwhLrsse~t~vfpip--a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIP--ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEecc--cceeEeeee--cceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 8999999998888877632 257777785 4578888888899999874 444444443332 33444443322 34
Q ss_pred EEEEECCCcEEEE
Q 001178 647 LVVTTADQGIKIL 659 (1131)
Q Consensus 647 l~~~~~dg~i~iw 659 (1131)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444555566555
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-14 Score=157.87 Aligned_cols=254 Identities=9% Similarity=0.057 Sum_probs=164.5
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECC-Ccee--EEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeec-
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMM-NFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRV- 906 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~- 906 (1131)
.....++++||+++|++++ ++.|.+|++. ++.. +.... .......++|+| ++++|++++ .++.|.+|++++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4566789999999998775 6889999986 3432 22222 234567899999 777666665 488999999974
Q ss_pred c---eeEEeecccccCeeEEEEccCCCEEEE-EeCCCcEEEEEcCCCceeee---eeeecCCCCCCCCceEEEEcCCCcE
Q 001178 907 D---EVKTKLKGHQKHITGLAFSTNLNILVS-SGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 907 ~---~~~~~~~~h~~~V~~l~~s~dg~~l~s-~~~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
+ +.+..+.+ .....+++++|+|+++++ ...++.|.+||+++...... .......+ .....++|+|+|++
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g---~~p~~~~~~pdg~~ 188 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG---AGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC---CCCceEEECCCCCE
Confidence 2 22333332 234677899999998855 44579999999987332211 11112222 45678999999999
Q ss_pred EEEEe--CCeEEEEeCCC--c--ccceeeecCC---CCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCceeeEecC
Q 001178 980 LLVNH--ETQLAIYDGSK--M--ECIRQWVPQD---VLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 980 l~~~~--d~~i~vwd~~~--~--~~~~~~~~~~---~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+++.. ++.|.+|+++. + +.+..+.... .+......+.|+|||++|+++.. ++.|.+|+++.......+..
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 98764 78999999973 2 2233332211 11223346899999999999864 68999999965432112211
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEec-CCcEEEEecCCCccccccc
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~-Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+... . ..+-.+.++| ++.+|++++. +++|.+|++....+.+...
T Consensus 269 ~~~~--~-------~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 269 HQPT--E-------TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEec--c-------ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 1100 0 1233478899 4566665554 9999999997665555443
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-15 Score=165.70 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=203.6
Q ss_pred CCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceece
Q 001178 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403 (1131)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1131)
+++...+|+..+. ...-..+.-...|+|++|+|....++|.|+.+|.|.+||+..+....... ...
T Consensus 220 ~~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~ 285 (555)
T KOG1587|consen 220 PDGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSA 285 (555)
T ss_pred CCceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------ccc
Confidence 3346788988886 66777788899999999999988899999999999999998876531100 111
Q ss_pred eccCCCCCEEEEEEcCCCCE--EEEEeCCCeEEEEEecCCCccceeeee--e-------cCcCCeeEEEEecCCCceEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNF--IGVAFTKHLIHLYTYQGSNDLCQSLEI--D-------AHVGGVNDLAFSYPNKQLCIV 472 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~--las~~~d~~i~vwd~~~~~~~~~~~~~--~-------~h~~~V~~l~~s~d~~~~~l~ 472 (1131)
....|..+|+.+.|-.+-.- +++++.||.|..|+++.-........+ . .-...+++++|.+.... .++
T Consensus 286 ~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~Fi 364 (555)
T KOG1587|consen 286 LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFI 364 (555)
T ss_pred ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEE
Confidence 35589999999999876544 999999999999988653321111001 1 12246899999997776 799
Q ss_pred EEcCCCcEEEEe---CCCce------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCCc
Q 001178 473 TCGDDKLIRVWD---LSGRK------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGL 542 (1131)
Q Consensus 473 s~s~d~~i~iwd---~~~~~------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~ 542 (1131)
.|+.+|.|.-=+ .+-.. +..+..|.++|.++.++|-.. ..+++++ |.++++|.-. ....+..+..+..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD 442 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence 999999988733 22222 345667899999999877654 3444555 9999999887 6666667777777
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
.+++++|||-.-.++.+. +.+|.|.+||+.... ++.+.... ....+.+.|++.|+.+++|...|++.+|++..
T Consensus 443 ~v~~vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 899999999876666654 359999999986533 33333332 33566788999999999999999999999864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-15 Score=146.55 Aligned_cols=300 Identities=16% Similarity=0.189 Sum_probs=214.8
Q ss_pred EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC------CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC
Q 001178 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES------EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 536 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
.+..|.+.|+++.|+.++++|++++. +..+.+|++. +.+++.....++...|.+++|.....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 34567888999999999999999986 8899999974 3466666666676789999999888899999999
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccC
Q 001178 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPG 689 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1131)
++|...|+.+.+.+.........+.|+.+..+|..+.+++.+.++.|.+||.........
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~-------------------- 186 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS-------------------- 186 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc--------------------
Confidence 999999999999999888777667899999999999999999999999999866521100
Q ss_pred ccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccc
Q 001178 690 SAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769 (1131)
Q Consensus 690 ~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1131)
.+.|. .....
T Consensus 187 -----~~~~A-----------------------------------------------------------------N~~~~ 196 (609)
T KOG4227|consen 187 -----LVLPA-----------------------------------------------------------------NSGKN 196 (609)
T ss_pred -----eeeec-----------------------------------------------------------------CCCcc
Confidence 00000 01223
Q ss_pred eEEEEeecCCceEE-EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 770 VARLLYTNSGIGIL-ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 770 i~~l~~s~~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
...+.|.|....|+ +....+-+-+||....... ++.....+ .++ .....-.++.|+|.|..+
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~------------~~~~~~~~----~L~-~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARP------------VYQRSMFK----GLP-QENTEWMGSLWSPSGNQF 259 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccch------------HHhhhccc----cCc-ccchhhhheeeCCCCCee
Confidence 34556666654444 4455677777876542211 00000000 011 012223567899999988
Q ss_pred EEEeCC-eEEEEECCCceeEEEEeCCC-------CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-------------
Q 001178 849 MSAGGG-KVSLFNMMNFKVMTTFMSPP-------PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD------------- 907 (1131)
Q Consensus 849 a~~~dg-~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~------------- 907 (1131)
.+--.+ .-.+||+-+..+...-..|. ..+.+++|.- ..-+++|+.+-.|++|.+...
T Consensus 260 msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~ 337 (609)
T KOG4227|consen 260 MSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE 337 (609)
T ss_pred hhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcch
Confidence 877643 45677887755433222222 2467788875 455999999999999987521
Q ss_pred ----------eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 908 ----------EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 908 ----------~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
+.+..++||..-+..+.|+|...+|++.|..+.+++|.--.
T Consensus 338 ~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 338 EEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred hhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 23567899999999999999999999999999999997543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-15 Score=166.18 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=150.3
Q ss_pred EEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeC-CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc---eeEEee
Q 001178 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD---EVKTKL 913 (1131)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~---~~~~~~ 913 (1131)
+.|-....+|.+++ -..|+|||...-.+...+.. ...-|+++.-+...|.++|+|..||.|++||.+.. ..+...
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 34444434444444 57799999998877777653 34557777766557899999999999999998743 457788
Q ss_pred cccccC--eeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 914 KGHQKH--ITGLAFSTNLNI-LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 914 ~~h~~~--V~~l~~s~dg~~-l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
+.|+.. |..+.+-+.|-. |++|+.||.|++||+..........+... -..++..+++..+++...+|+|+.+.|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~-~~yGs~lTal~VH~hapiiAsGs~q~ikI 1329 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH-WEYGSALTALTVHEHAPIIASGSAQLIKI 1329 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec-cccCccceeeeeccCCCeeeecCcceEEE
Confidence 899988 999999987755 99999999999999998532222222111 11124589999999999999998899999
Q ss_pred EeCCCcccceeeecCCC----CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 991 YDGSKMECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~----~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
|++.. +.+..+..... ....+.|++|.|---+||+|+.|.+|.||..+...
T Consensus 1330 y~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1330 YSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred EecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99873 33333322211 15678999999999999999999999999877654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=137.86 Aligned_cols=241 Identities=10% Similarity=0.125 Sum_probs=182.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG 487 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~ 487 (1131)
...+..+.|+.|...|..|+.|| -++|+...-... .........|.-+-|+.. -+.+++..+-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh---hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 44677888999999999999998 678887653321 111222234555566644 21333443334589999 666
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEEEEccCCCEEEEEeecCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
..++.+. ...+|.++.++. +.|+.+-.+. |+|||+++.+.+..+.. +...+.++.+++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 456788888743 4566555444 99999999888775544 3345777777778889988653 3
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
..|.|++||..+-+.+..+..|.+ .+.+++|+++|.+||++++.|+ ||||.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 478999999999999999998766 9999999999999999999987 69999999999998876655567899999999
Q ss_pred CCEEEEEECCCcEEEEecCCC
Q 001178 644 GNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.+|++.+..++|++|.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=161.58 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=181.5
Q ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCcc--ce-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 408 SSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDL--CQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 408 h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
-...|.|++|+| +..++|.|..+|.|.+||+..+... .. ......|..+|+.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 6778888999999999999887652 11 1123468899999999876543359999999999999
Q ss_pred eCCCc-------eeEEec------CCccCeEEEeecccCCccEEEEEecCCeEEEEeCC---CCc-----eeEEecCCCc
Q 001178 484 DLSGR-------KLFQFE------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD---NVG-----SRVDYDAPGL 542 (1131)
Q Consensus 484 d~~~~-------~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~---~~~-----~~~~~~~~~~ 542 (1131)
+...- +..... .-...++++.|.+... ..++.|+.+|.|.--... ... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 83211 111111 1224578888876544 678899999999873322 222 1224556778
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1131)
+|+++.++|-+..++..+. |.++++|... ...++..+..+.. .++.++|||... .|+++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998776665543 8999999977 5566666665444 599999999875 5666778999999999764
Q ss_pred e--EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 621 N--MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 621 ~--~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
. ++...... ....+.+.|+++|+.+++|...|.+.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 3 33333333 336788889999999999999999999998654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-14 Score=138.01 Aligned_cols=247 Identities=15% Similarity=0.210 Sum_probs=178.8
Q ss_pred CCCCCeeEEEecCCCC----EEEEEeCCeEEEEECCC--ceeE--EEE-----eCCCCCeeEEEEeCCCCcEEEEEeCCC
Q 001178 831 NAEDVVPCVALSKNDS----YVMSAGGGKVSLFNMMN--FKVM--TTF-----MSPPPASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~----~la~~~dg~i~vwd~~~--~~~~--~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.|..+++.+.|.|+.+ -++..++..+|+|.+.. .+.. ..+ ..+..++++..|..-+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 5889999999999874 23344466899999873 2211 111 135578999999988889999999999
Q ss_pred cEEEEEeecce---eEEeecccccCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 898 TIQIYNVRVDE---VKTKLKGHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 898 ~I~iwd~~~~~---~~~~~~~h~~~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+..|||++++. ....+.+|..+|..++|+.++ +.+|++|.||.|+++|+...+- ...+- .......+...++|
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH--STIIY-E~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH--STIIY-EDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc--ceEEe-cCCCCCCcceeecc
Confidence 99999999863 467889999999999999865 4799999999999999987442 11111 11221367788888
Q ss_pred cCCCc-EEEE--EeCCeEEEEeCCC-cccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCceeeEec
Q 001178 974 HSDQV-RLLV--NHETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 974 s~d~~-~l~~--~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
++..- ++|+ .....|.|.|++. ...+..+..| .+.|++++|.|.. ..|.+++.|..+.+||+...-......
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H---~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH---QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC---cccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 87654 5555 3467899999986 5566777776 8999999999964 599999999999999998654311111
Q ss_pred CCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1049 PSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1049 ~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
+..... .++.|+ .+.|+|..++.++.+... ++.+-
T Consensus 328 Pilay~-----a~~EVN--qi~Ws~~~~Dwiai~~~k-kleiL 362 (364)
T KOG0290|consen 328 PILAYT-----AGGEVN--QIQWSSSQPDWIAICFGK-KLEIL 362 (364)
T ss_pred chhhhh-----ccceee--eeeecccCCCEEEEEecC-eeeEE
Confidence 111111 244455 688888888888887743 34443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-14 Score=161.87 Aligned_cols=290 Identities=15% Similarity=0.198 Sum_probs=202.1
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIGV 426 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las 426 (1131)
.-..+.|+|-.. .++++...-.|+|||++.++.+.. |+. -......|+.+.+-. |..++.+
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~-----F~n-----------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNG-----FDN-----------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceecc-----ccC-----------CCCCCCccceeeeecccchhheee
Confidence 567788999887 477776667899999999987652 111 112346789998876 5568999
Q ss_pred EeCCCeEEEEEecCC--Cccc---eeeeeecCc----CCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-C
Q 001178 427 AFTKHLIHLYTYQGS--NDLC---QSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-G 495 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~--~~~~---~~~~~~~h~----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~ 495 (1131)
|+.||.|+||+--.. +..+ ....+.++. +.=.-++|-.... +|+++|+-+.|+||| ....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 999999999974322 1111 111222221 1113346666555 577777789999999 4444444443 4
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce---eEEecCCCce--EEEEEEccCCCE-EEEEeecCCCCceE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLW--CTTMLYSADGSR-LFSCGTSKEGDSHL 569 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~--v~~~~~s~~g~~-l~~~~~~~~~~~~i 569 (1131)
...-|+++.-.. ..|+.+++|..||.|++||.+.... ......|... |..+.+.+.|-. |++++. +|.|
T Consensus 1207 s~t~vTaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----~G~I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADL-VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----DGDI 1281 (1387)
T ss_pred CCccceeecccc-cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----CCeE
Confidence 455677776543 3478999999999999999886544 2345556655 999999987755 888876 9999
Q ss_pred EEEeCCCCeeeE--EEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----CCCCCcceEEE
Q 001178 570 VEWNESEGALKR--TYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRF 640 (1131)
Q Consensus 570 ~iwd~~~~~~~~--~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~v~~ 640 (1131)
++||++...... ....|. ++..+++..++....+++|+. +.|.||++.. +.+..+... .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999998742222 222222 334889999999999999988 9999999864 333333221 22346799999
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|..-++|+|+.|..|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-13 Score=150.16 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
+-++++.- .+++|+.-+.|.+|+....+.- ..+.||.+.|.++.|+-||+++++.|+|.+
T Consensus 139 ~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEEL-YIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEE-EEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcc
Confidence 34556654 4889999999999998722211 137899999999999999999999999999
Q ss_pred EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCcc-CeEEEeecccCCc
Q 001178 433 IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-PVYSVCPHQKENI 511 (1131)
Q Consensus 433 i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~-~v~~~~~~~~~~~ 511 (1131)
+++|++++++... ...-+|+++|+.++|.|. .++|++.|.+.++|+..+..+..+.+|.+ .++.++..+ +.
T Consensus 199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~--~~ 270 (967)
T KOG0974|consen 199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPI--GV 270 (967)
T ss_pred eeeeecccccccC--cccccccceeEEEEeccc----eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcC--Cc
Confidence 9999999988665 246789999999999998 49999999999999988888889988865 578887744 44
Q ss_pred cEEEEEecCCeEEEEeCCCC
Q 001178 512 HFIFSTAVDGKIKAWLYDNV 531 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~ 531 (1131)
..++|++.|+.+++|++...
T Consensus 271 ~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eEEEeeccCcchhhhhhhcc
Confidence 78999999999999997653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=142.62 Aligned_cols=237 Identities=16% Similarity=0.170 Sum_probs=180.4
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-..+|+|.||++|++ .+|++.....|.||.......-. ..++++.|...|+++.|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 356899999999998 59999999999999987665221 2347889999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeE-----EecCCccCe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLF-----QFEGHEAPV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~h~~~v 500 (1131)
+|+.|..-.||....+..-++...+..|+..++++.|+|.++ .+++||.-+.|.||-.+++.-. .-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966555666667888999999999999999 7999999999999984443322 223567889
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeC-----CCC-------------ceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLY-----DNV-------------GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~-----~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.++.|++.+ -++++|+.|+..+++.. +.. ....++....+++..+.|+|+|..|+..+.
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H- 226 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH- 226 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence 999998754 68999999999999853 221 112233356678999999999999999986
Q ss_pred CCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcC
Q 001178 563 KEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
+..+.+-|..... .+....... -+..++.|-.+ +.++.++.|
T Consensus 227 ---ds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 ---DSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred ---CCceEEeecCCCchhccchhhcc-CCceeeEeecC-CceeecCCC
Confidence 8889888876554 233333222 35566666543 334444444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=165.76 Aligned_cols=235 Identities=14% Similarity=0.130 Sum_probs=164.0
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLC 445 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 445 (1131)
+..|.|||....... .+..|...+.+.+|||||+.||.++.+ ..|.+||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK- 241 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-
Confidence 468999998765432 355778889999999999999988654 37999999887532
Q ss_pred eeeeeecCcCCeeEEEEecCCCceEEEE-EcCCCcEEEE--eCCCceeEEecCCccCeEEEeecccCCccEEEEE-ecCC
Q 001178 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDKLIRVW--DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDG 521 (1131)
Q Consensus 446 ~~~~~~~h~~~V~~l~~s~d~~~~~l~s-~s~d~~i~iw--d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg 521 (1131)
....+.+| ...++|+|||+. |+. .+.++.+.|| |..+..+..+..+...+....|+| +|+.|+.+ ..+|
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred EEecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 22233344 447899999994 554 4568876666 555566677777777788888865 55665544 4678
Q ss_pred eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
...+|+++..........+.. ....|+|||+++++.+. ..+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 888888765333222222322 45789999999988763 34777999888765333222 234578999999
Q ss_pred EEEEEEcCCcEEEEEc--CCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 602 RILAAGEDNQIKFWDM--DNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 602 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+|+.++.++.+.+|.+ .++.....+..+.. .+..++|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999999998888875 35667777764433 5788899884
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=138.49 Aligned_cols=265 Identities=15% Similarity=0.246 Sum_probs=186.3
Q ss_pred ccccCCCcccceee--eccCCCcEEEEEEecCCC----cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceec
Q 001178 329 ATWSLDDLPRAVAC--TMHQGSSVVSMDFHPFHH----TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 329 ~~~~~~~~~~~~~~--~~~h~~~V~~~~fspdg~----~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
-+...++...+.+. .+.|.-+++.+-|.|+.+ .+||+.+ ..+|||.+...+...... ..+..
T Consensus 76 qiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----------~~L~~ 143 (364)
T KOG0290|consen 76 QIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----------SVLNN 143 (364)
T ss_pred EEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----------hhhcc
Confidence 33444444444433 468999999999999863 3677754 489999997432211100 00111
Q ss_pred eeccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 403 AIVKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..-..+..++++..|+. |-++|.+++-|-+..|||++++........+.+|...|.+++|...+.+ +++|.|.||.+|
T Consensus 144 ~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvR 222 (364)
T KOG0290|consen 144 NKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVR 222 (364)
T ss_pred CcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEE
Confidence 12345678999999998 7889999999999999999998543334568899999999999998877 899999999999
Q ss_pred EEeCCC-c---eeEEecCCccCeEEEeecccCCccEEEEEecC-CeEEEEeCCCCce-eEEecCCCceEEEEEEccC-CC
Q 001178 482 VWDLSG-R---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSAD-GS 554 (1131)
Q Consensus 482 iwd~~~-~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~-g~ 554 (1131)
++|+.. . .+.+-.....+...++|+.. |-+++++-..| ..|.+.|++.... ...+..|...|+.++|.|. ..
T Consensus 223 mFDLR~leHSTIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~ 301 (364)
T KOG0290|consen 223 MFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSS 301 (364)
T ss_pred EEEecccccceEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCc
Confidence 999322 2 22222223567888888764 44677776655 4688899987654 4588899999999999996 46
Q ss_pred EEEEEeecCCCCceEEEEeCCCCe------eeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEE
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGA------LKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKF 614 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i 614 (1131)
.+.+++. |.++-+||+.+.- ++..+. .++.|+.+.|++.. ..++.+.. +.+.+
T Consensus 302 hictaGD----D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 302 HICTAGD----DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred eeeecCC----cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 6778875 8999999987532 222333 33478899999654 56666554 34443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-13 Score=145.04 Aligned_cols=334 Identities=14% Similarity=0.161 Sum_probs=206.4
Q ss_pred ceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEE
Q 001178 468 QLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTT 546 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 546 (1131)
.+++++-..++.|.|.| .+.+.+.++.........+.+ ++|++++++++.||.|.++|+.+.+...++.... ....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34567778899999999 888888888765444344555 5677899999999999999999998777776544 4688
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------CCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCC
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
+++++||++++++.. ..+.+.++|.++.+.++.+.... ...+.++..+|....++.. -+.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998865 27899999999999998876432 2246677778888855554 4558888889877
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
.+.+........ .......|+|++++++++ .....|.++|..++.. ...+
T Consensus 160 ~~~~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i--------------------------- 210 (369)
T PF02239_consen 160 PKNLKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALI--------------------------- 210 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEE---------------------------
T ss_pred ccccceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceE-EEEe---------------------------
Confidence 654432222211 146789999999988765 4466888888766511 1000
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
+... ..|......+- .|.
T Consensus 211 ----------------------------------------------~~g~---------------~p~~~~~~~~p-hp~ 228 (369)
T PF02239_consen 211 ----------------------------------------------DTGK---------------KPHPGPGANFP-HPG 228 (369)
T ss_dssp ----------------------------------------------E-SS---------------SBEETTEEEEE-ETT
T ss_pred ----------------------------------------------eccc---------------ccccccccccc-CCC
Confidence 0000 00111111110 010
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE-EEEeCCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV-MSAGGGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l-a~~~dg~i~ 857 (1131)
.++++ +.+..+... ...+.+.+.
T Consensus 229 ------------------------------------------------------~g~vw--~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 229 ------------------------------------------------------FGPVW--ATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp ------------------------------------------------------TEEEE--EEEBSSSSEEEEEE--TTT
T ss_pred ------------------------------------------------------cceEE--eeccccceecccccCCccc
Confidence 01111 111222332 222345666
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE----eCCCcEEEEEeecceeEEeecccc-cCeeEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG----MEDSTIQIYNVRVDEVKTKLKGHQ-KHITGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g----~~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l 932 (1131)
+|+..+++.++++....+. .-+..+| +++++.+. ...++|.++|.++.+.+..+.... ..+..+.|++||+.+
T Consensus 253 v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred cchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 8999999999999976666 7888899 88888877 556899999999998877775433 359999999999975
Q ss_pred EEEeC--CCcEEEEEcCCCceeeeee
Q 001178 933 VSSGS--DAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 933 ~s~~~--Dg~v~lwd~~~~~~~~~~~ 956 (1131)
..+.. ++.|.+||..+.+......
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 55444 3379999999988766554
|
... |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=159.21 Aligned_cols=256 Identities=13% Similarity=0.086 Sum_probs=180.7
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCC----CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
.+..|...|..++.+++. .++++|+.||+|++||...- ...+...++.--..++.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 366788889899888755 99999999999999998642 11222333443467899999999999 688889999
Q ss_pred cEEEEeCCC---ce-----eEEecCC-ccCeEEE-eecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEE
Q 001178 479 LIRVWDLSG---RK-----LFQFEGH-EAPVYSV-CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTT 546 (1131)
Q Consensus 479 ~i~iwd~~~---~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~ 546 (1131)
.|++.++.- +. ......+ .+.+.++ ++........++.+..-+.|..||.+.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998322 11 1111112 2334433 3433333347888899999999999887766543 344567999
Q ss_pred EEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC---CEEEEEE--cCCcEEEEEcCCCe
Q 001178 547 MLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR---NRILAAG--EDNQIKFWDMDNVN 621 (1131)
Q Consensus 547 ~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~--~dg~i~iwd~~~~~ 621 (1131)
++.+|.+.+++.|.. .|.+.+||++-+.++..........+.-++.+|-. ...++++ ..+.|.+|++.+|.
T Consensus 1201 i~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EEecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999999999999986 89999999998888877765555567766666543 3444443 57889999999987
Q ss_pred EEEEEeccCCC-----------------CCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 622 MLTSTEAEGGL-----------------PSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 622 ~~~~~~~~~~~-----------------~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
....+...... .....+.+...+..+.+|+.|..|+.||.....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 76665433111 011223344446788999999999999987663
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=136.91 Aligned_cols=241 Identities=11% Similarity=0.194 Sum_probs=184.7
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc--EEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST--IQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~--I~iwd~~~~~~~ 910 (1131)
...+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+.. +++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4556777899999999999966678888877655433334445577777765 46666665544 899998888777
Q ss_pred EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE---eCCe
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN---HETQ 987 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~---~d~~ 987 (1131)
..+. ...+|.+|.++. ++|+++=.+. |+|||++.-+......... .+...+.++.+++.+.+|+.- +.|.
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeeccCCCCceEEecCCCCCce
Confidence 6665 346799999974 4666665554 9999999865444332221 122456677777777799973 4789
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCc-EEEEECCCCceeeEecCCccccCCCCCCCCcccc
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS-IGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFP 1066 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1066 (1131)
|.+||+.+.+.+..+..| .+++-+++|++||.+|||+++.|+ |||+.+.+|+.+..++...+ .+..
T Consensus 155 V~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----------~~~I 221 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----------PVSI 221 (391)
T ss_pred EEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----------eeEE
Confidence 999999999999998877 899999999999999999998887 89999999999999886442 3455
Q ss_pred EEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1067 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1067 ~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..++|+| ++.+|++.|..++|.+|++....
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 6899999 66799999999999999998766
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=149.46 Aligned_cols=201 Identities=21% Similarity=0.205 Sum_probs=151.9
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~ 957 (1131)
.+++|+. ++..|++|+.||++|+|+..+...+.....|.+.|.++.|||||++|++.+.| ..+||+..++......
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~-- 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK-- 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc--
Confidence 7899999 89999999999999999998888888888999999999999999999999999 8999999997432221
Q ss_pred ecCCCCCCCCceEEEEcCCC---cE-EEEE--eCCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 001178 958 QLPAGKLPVGETRVQFHSDQ---VR-LLVN--HETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 958 ~~~~~~~~~~v~~v~~s~d~---~~-l~~~--~d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
.+ .........+.|+.|+ .+ +++. ..+.++.|++....- +..+.........|++++.|+||+++|.|+.
T Consensus 224 -t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 -TP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred -CC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 11 1222456778888777 33 3332 245666666543221 1111111111458999999999999999999
Q ss_pred CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
||.|.|++..+.+...-++.. |.. ....+.|+| +.+++++.+.|.+..+..++-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~a---------H~~--~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEA---------HLG--FVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhh---------hee--eeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 999999999888876555422 333 455899999 6689999999999999998763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-12 Score=143.30 Aligned_cols=321 Identities=11% Similarity=0.105 Sum_probs=202.2
Q ss_pred cEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc
Q 001178 512 HFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1131)
Q Consensus 512 ~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1131)
+++ ++-..++.|.+.|.++.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+.++... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G--~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVG--GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-S--SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecC--CC
Confidence 344 45667899999999998888888766555556789999999999875 789999999999999998753 35
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCC-----CCCcceEEEcCCCCEEEEEECC-CcEEEEecCC
Q 001178 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGG-----LPSLPRLRFNKEGNLLVVTTAD-QGIKILANAD 663 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~~ 663 (1131)
...+++++||++++++. .++.+.++|..+.+.++.+...+. ...+..+..+|....+++.-.| +.|.+.|..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 67799999999998765 689999999999999988765422 2245566667777655554443 5555555433
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
...
T Consensus 160 ~~~----------------------------------------------------------------------------- 162 (369)
T PF02239_consen 160 PKN----------------------------------------------------------------------------- 162 (369)
T ss_dssp SSC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 200
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
+.. +..
T Consensus 163 --------------------------------------~~~-------~~i----------------------------- 168 (369)
T PF02239_consen 163 --------------------------------------LKV-------TTI----------------------------- 168 (369)
T ss_dssp --------------------------------------EEE-------EEE-----------------------------
T ss_pred --------------------------------------cce-------eee-----------------------------
Confidence 000 000
Q ss_pred cccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeeEEEEeCC---------CCc
Q 001178 824 MTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHPQ---------DNN 888 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~ 888 (1131)
..........|+|++++++++. ++.|-++|..+++.+..+.. |..+...+ .+|. .+.
T Consensus 169 -------~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 169 -------KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp -------E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred -------cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 0123344678888998887765 57899999988887776542 22233222 1221 122
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCCC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS----GSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~----~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 964 (1131)
..++.-....+.+|+..+.+.+..+....++ .-+..+|+++++.+. ...++|.++|.++.+....... ..+
T Consensus 241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--~~~-- 315 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--GPG-- 315 (369)
T ss_dssp SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--HHT--
T ss_pred eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--cCC--
Confidence 2222222335667888888999999887666 888889999999987 4458999999999653322211 111
Q ss_pred CCCceEEEEcCCCcEEEEE---eCCeEEEEeCCCcccceeee
Q 001178 965 PVGETRVQFHSDQVRLLVN---HETQLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 965 ~~~v~~v~~s~d~~~l~~~---~d~~i~vwd~~~~~~~~~~~ 1003 (1131)
..+..+.|++||+.+.++ .++.|.+||..+.+.+..+.
T Consensus 316 -~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 316 -KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ---EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred -CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 238899999999988775 24589999999999988775
|
... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=150.71 Aligned_cols=199 Identities=13% Similarity=0.201 Sum_probs=159.4
Q ss_pred eEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-
Q 001178 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK- 914 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~- 914 (1131)
.+++|+++|..+++++ ||++|||+..+...+.....|...|.++.||| |+++|++-+.| ..+||+..++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888888999999999999 99999999999 99999999997666554
Q ss_pred -ccccCeeEEEEccCC-----CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCe
Q 001178 915 -GHQKHITGLAFSTNL-----NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQ 987 (1131)
Q Consensus 915 -~h~~~V~~l~~s~dg-----~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~ 987 (1131)
........+.|+.|+ ...+....-+.|+.|++..+..-.......... ....+++++.++||++++.|+ ||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCc
Confidence 233346678888887 334444555678888887655421111111111 115899999999999999986 999
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
|.|++..+.+++.-... .|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999998888776543 4588999999999999999999999999987754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=137.01 Aligned_cols=259 Identities=13% Similarity=0.129 Sum_probs=193.4
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-c
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-V 906 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~ 906 (1131)
...+|+|.+|++|+..+|++. ...|.||..... +...++..|...|+.++|+| ....|++++.|..-++|... .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 367899999999999999998 568999987654 46788899999999999999 78889999999999999983 3
Q ss_pred c--eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-eeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 907 D--EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 907 ~--~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
+ +....+..|....+++.|+|.++.+|+||.-+.|.||-++..+.=-.. .+..+ ..+.|.++.|+|.+-+|++|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP---irStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP---IRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc---cccceeeeeccCCcceeccc
Confidence 3 455667779999999999999999999999999999988763321000 01111 22789999999999999997
Q ss_pred e-CCeEEEEeCC-----C-------------cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee
Q 001178 984 H-ETQLAIYDGS-----K-------------MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 984 ~-d~~i~vwd~~-----~-------------~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1044 (1131)
+ |+..||+..- + |+++.++... .+.|..+.|+|+|..|+-.+.|..+.+=|.......
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~---ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS---GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC---CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 5 9998888632 1 2333333322 678999999999999999999999999998776532
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccCCCCCCC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVDNGTD 1111 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~~~~~ 1111 (1131)
.........| -+++.|.. ++.++.++.|+.=.++...++. .|..+...+-++-
T Consensus 242 v~~~~~~~lP-----------~ls~~~is--e~~vv~ag~~c~P~lf~~~~~~-~l~~~~~ld~p~~ 294 (361)
T KOG1523|consen 242 VQSVATAQLP-----------LLSVSWIS--ENSVVAAGYDCGPVLFVTDEEG-GLSFARRLDAPKA 294 (361)
T ss_pred ccchhhccCC-----------ceeeEeec--CCceeecCCCCCceEEEecccc-ceeeehhcCCccc
Confidence 2211111122 13466665 3568888888766666665554 5877765554444
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=159.36 Aligned_cols=177 Identities=14% Similarity=0.172 Sum_probs=134.7
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-------eEEecCCCceEEEEEEccCCCE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDYDAPGLWCTTMLYSADGSR 555 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~ 555 (1131)
|+..|..+..+..|...|..++.+. +++.++++||.||+|++|+.+.... ..++...+..+..+.+.+.++.
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 8899999999999999999888764 5558999999999999999865322 2344445678999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCC-------eeeEEEecccCCc-eEEEEEeCC-C-CEEEEEEcCCcEEEEEcCCCeEEEE
Q 001178 556 LFSCGTSKEGDSHLVEWNESEG-------ALKRTYIGFRKKS-AGVVQFDTT-R-NRILAAGEDNQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~-v~~~~~s~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1131)
+|+++. ||.|.+.++.-. ...+....+..+. +..-+|... + ..++.+..-+.|..||.........
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999976 999999887641 1122222222222 233333322 2 3677788889999999998877777
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++..-..+.|++++.+|.+.+++.|+..|.+.+||+.-+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 666655568999999999999999999999999998654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-12 Score=124.37 Aligned_cols=240 Identities=13% Similarity=0.187 Sum_probs=167.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCcEEEEe-
Q 001178 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIRVWD- 484 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~i~iwd- 484 (1131)
...+++|+.|...+++|..+| .+||+++--+... ...-+.+.+.-+...--.+.+.|+-|+. -+.|.|||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 345699999999999998777 8999987522211 1111222221111111233323333332 25799999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCC--ceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~ 561 (1131)
...+++.++. ...+|.++++.. ..|++. .++.|.+|... +.+....+.... ....+++-..+...||.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r----~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR----DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC----CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 8888988886 678899998843 234333 46899999887 444444333322 23444444444455555443
Q ss_pred cCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 562 SKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
..|.|++-|+...+. ...+..|.. .|.|++.+-+|..+|+++..|+ |||||..+|+.+..+........|.++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 468999999876554 355566554 9999999999999999999998 699999999999998877666789999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|||+..+|+++++.|+++|+.+...
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999998764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-14 Score=146.28 Aligned_cols=294 Identities=13% Similarity=0.122 Sum_probs=217.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|..+-|+..|..|++|+.|..|.+||...++..... ..||...|....|.|.....-+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 47799999999999999999999999999999999988754322 3689999988889886544479999999999998
Q ss_pred e--CCCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCc---eEEEEEEccCC
Q 001178 484 D--LSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGL---WCTTMLYSADG 553 (1131)
Q Consensus 484 d--~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~~g 553 (1131)
. .++.+. ..+..|.++|.-++..|... ..|++++.|+.+.-.|++.......+. .+.. ....++..|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7 444443 45668999999998876443 678999999999999998765544322 1222 56788899876
Q ss_pred C-EEEEEeecCCCCceEEEEeCCCCee------eEEEecc-----cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--
Q 001178 554 S-RLFSCGTSKEGDSHLVEWNESEGAL------KRTYIGF-----RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-- 619 (1131)
Q Consensus 554 ~-~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-- 619 (1131)
. .+++++. +..+++||.+.-.. +..+..+ ..-.|++++|+.++.-++++..|-.|++++-..
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6677765 77889998764221 2333222 223588999998888888888899999996433
Q ss_pred C----------eEEEE-EeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 620 V----------NMLTS-TEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 620 ~----------~~~~~-~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
| ..+.. .++|.+...|..+-| .|...++++|+.=|.|.||+-.++ +.++.+++....+.
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVN-------- 440 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVN-------- 440 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhcccceEe--------
Confidence 2 12222 566766667888865 678899999999999999998887 77777776554322
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
++-|. +.--.+++.+.|..|++|...
T Consensus 441 -------CLEpH---------------------------P~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 441 -------CLEPH---------------------------PHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred -------ccCCC---------------------------CCCchhhccCCccceeeecCC
Confidence 33333 223457888999999999863
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-12 Score=130.62 Aligned_cols=286 Identities=15% Similarity=0.180 Sum_probs=185.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC-CEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-NFIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg-~~la 425 (1131)
...+..++|++--- -+|++..|-.|+|||-.....-. +-......|+|++|-|.+ +.|+
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence 34678899998443 37888999999999976622211 122345689999999964 5777
Q ss_pred EEeCCCeEEEEEecCCCcc-----------ceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEEEe-CCCceeEE
Q 001178 426 VAFTKHLIHLYTYQGSNDL-----------CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~ 492 (1131)
.|+..| |.+|........ .+...-.|| .+|++++|.+||. .+++++ .|..|.||| .+|..+.-
T Consensus 158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence 777655 999987432111 111223455 6899999999999 677776 577899999 66655544
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
.....+.+.-+.|+| |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+.+... ...++-.
T Consensus 234 ~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl 308 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSL 308 (445)
T ss_pred cccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEE
Confidence 444567788899965 66799999999999999654443333333444589999999999998877631 2222221
Q ss_pred eC--CCCe-----------eeEEE------ec--ccCCceEEEEEeCCCCEEEEEEcCC--------cEEEEEcCCCeEE
Q 001178 573 NE--SEGA-----------LKRTY------IG--FRKKSAGVVQFDTTRNRILAAGEDN--------QIKFWDMDNVNML 623 (1131)
Q Consensus 573 d~--~~~~-----------~~~~~------~~--~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~ 623 (1131)
.. +.+. ++..+ .+ .-.+...+++|.|.|.++++.-..+ .|.+||....-.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 11 1110 00011 01 0134678899999999999865433 3667777654443
Q ss_pred EEEec-cCCCCCcceEEEcC---CCCEEEEEECCCcEEEEec
Q 001178 624 TSTEA-EGGLPSLPRLRFNK---EGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 624 ~~~~~-~~~~~~i~~v~~sp---~~~~l~~~~~dg~i~iw~~ 661 (1131)
..... ......-..++|+| ++.+|.++=..|.+.-|++
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 33211 11111245677776 6778888888888887775
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-13 Score=154.26 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=162.1
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
+..|++||..... .+.+..+.. .+....|+|+|+.|+.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 4689999986544 445554433 78889999999999887643 469999998876543332222 245789999
Q ss_pred CCCEEEEEE-CCCcEEEEecC--CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 643 EGNLLVVTT-ADQGIKILANA--DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 643 ~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
||+.|+.+. .+|.+.||.+. ++. ...+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~--~~~l------------------------------------------------ 287 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGT--PSQL------------------------------------------------ 287 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCC--eEee------------------------------------------------
Confidence 999888765 57876666442 220 0000
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-cceeeEEeecC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNR 798 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~ 798 (1131)
..+...+....|+|||+.++..+. +|...+|+++.
T Consensus 288 --------------------------------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 288 --------------------------------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred --------------------------------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 002234557889999998887664 67888887654
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCee
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 878 (1131)
... .... + .+.. ....|+|||++|+..+...+.+||+.+++........ ...
T Consensus 324 ~~~--------------------~~~~--l--~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~ 375 (429)
T PRK01742 324 SGG--------------------GASL--V--GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE 375 (429)
T ss_pred CCC--------------------CeEE--e--cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence 211 1000 0 1111 3468999999999887556777999988765433222 345
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccC
Q 001178 879 FLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 879 ~l~~s~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
.+.|+| ++++|+.++.++.+.+|.+. +++.+..+.+|.+.+..++|||-
T Consensus 376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 678999 89999999999999888864 57888889999999999999984
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-10 Score=115.87 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCeeEEEecCCCCEEEEEeC-CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEEeec
Q 001178 832 AEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRV 906 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd~~~ 906 (1131)
.-+.|.++..++||++++++.+ ..|.+.|+.++.....-+...+-|+.++|+| +++++|.+--+| .|++||+.+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 3456788999999999999984 7899999999988766666678899999999 999999987776 589999998
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeC
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
++...... ..+.=.+-+|.||+++|..-+.
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence 88654433 3333466789999998776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-11 Score=133.46 Aligned_cols=572 Identities=11% Similarity=0.119 Sum_probs=334.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
......|++|+-... ++|+|+.||.++|-.+.+...-.... -+...+...-..++.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445788999998887 59999999999999987654322100 0111111112236899999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEee
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
+...+|.|.||-+-.|.-.... .-....+.|.+++|..||+ .++....||.|.|=...|..+.--.-...-...+.|
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999999887643211 1123456789999999999 678888888886655555554321111112234555
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCcee-------E----EecCCCceEEEEEE--------ccCCCEEEEEeecCCCC
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSR-------V----DYDAPGLWCTTMLY--------SADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-------~----~~~~~~~~v~~~~~--------s~~g~~l~~~~~~~~~~ 566 (1131)
+ +|...++.+-..|.++++|....-.. . .+......|..+.| -||...++++-. +
T Consensus 165 s--~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----n 238 (1189)
T KOG2041|consen 165 S--EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----N 238 (1189)
T ss_pred c--ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----C
Confidence 3 45567777778899999986542111 1 11111223444444 246777888765 6
Q ss_pred ceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---------CcEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---------NQIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
|.+.+..-.+......+.. +-.+....|+++|..+++++.+ +.|.+|.. -|+.+.+++..+. .|+.
T Consensus 239 Gr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~ 313 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITG 313 (1189)
T ss_pred ceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeee
Confidence 6776655443332223321 2256778999999999998754 34555553 4677777777765 7999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccc
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1131)
++|-..|-.++.+ .|+.|.+=++.... .+-.+ ...+. ..++.. .
T Consensus 314 lsWEg~gLriA~A-vdsfiyfanIRP~y-kWgy~---e~TvV--------------y~y~~~---------e-------- 357 (1189)
T KOG2041|consen 314 LSWEGTGLRIAIA-VDSFIYFANIRPEY-KWGYI---EETVV--------------YVYQKE---------E-------- 357 (1189)
T ss_pred eEEcCCceEEEEE-ecceEEEEeecccc-eEEEe---eeEEE--------------EEEccC---------C--------
Confidence 9998877666655 46777776654331 00000 00000 000000 0
Q ss_pred ccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeec
Q 001178 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1131)
Q Consensus 718 l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1131)
.-...|.+|+..+.....+ .-....++++..+.-.|+.-..++.+.-++.-
T Consensus 358 ------------------~p~y~i~Fwdtk~nek~vK-----------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~l 408 (1189)
T KOG2041|consen 358 ------------------LPQYGIMFWDTKTNEKTVK-----------TVTHFENMAFYREHCVLINRQDDGVIPEYSTL 408 (1189)
T ss_pred ------------------CcceEEEEEecccChhhhh-----------hhcceeehheecccEEEEeccccCCCcchhhh
Confidence 0002355666554221111 11223456666665556655666665443110
Q ss_pred CCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC---CC
Q 001178 798 RTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS---PP 874 (1131)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~ 874 (1131)
. ..+ ......+-+.- |..+. ..-..|.-.-..-++.+++.++...+.+|.....+....+.+ +.
T Consensus 409 e----~~~---~~~~l~LCNSI-GT~lD-----~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 409 E----NRS---RVYFLQLCNSI-GTSLD-----YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred h----ccc---ceEEEeeeccc-CCcCC-----CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcc
Confidence 0 000 00000010000 11000 011122222223467788888888899998765444333322 11
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
..- |+-| ..-+|..|+++. .. ..++.|..++|.+++.| .++|..+-..|.|.-+.+........
T Consensus 476 egr----~h~D---dtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~ 539 (1189)
T KOG2041|consen 476 EGR----FHGD---DTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS 539 (1189)
T ss_pred ccc----ccCC---CCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence 111 3321 123455666552 11 34677889999999997 56899999999999999987443222
Q ss_pred eeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCC---CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGS---KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~---~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.. ....+.+++..-....++.-+ -|.+.+.|+. +|..+..+... ....|+.+.|..|+..|++--+.
T Consensus 540 y~-------~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~--errDVWd~~Wa~dNp~llAlmeK 610 (1189)
T KOG2041|consen 540 YP-------VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTS--ERRDVWDYEWAQDNPNLLALMEK 610 (1189)
T ss_pred cc-------cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehh--hhhhhhhhhhccCCchHHhhhhh
Confidence 21 225778888888888887743 6777777776 34444433222 26789999999998877776666
Q ss_pred CcEEEEECC
Q 001178 1031 GSIGVFDAD 1039 (1131)
Q Consensus 1031 g~i~vwd~~ 1039 (1131)
-.++|++-.
T Consensus 611 trmyifrgn 619 (1189)
T KOG2041|consen 611 TRMYIFRGN 619 (1189)
T ss_pred ceEEEecCc
Confidence 677777643
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-15 Score=161.66 Aligned_cols=216 Identities=16% Similarity=0.234 Sum_probs=156.3
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC-cEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-LIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~-~i~i 482 (1131)
++..|....+|++||-+.++|+.|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. .|.+++... ...+
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHH
Confidence 366788899999999999999999999999999999998655 56889999999999999984 233333333 5789
Q ss_pred Ee--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cC---CCceEEEEEEccCCCEE
Q 001178 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DA---PGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~---~~~~v~~~~~s~~g~~l 556 (1131)
|+ ..+...++|.+ -.++.|+.+. ..-+.|+.-....+||+++.....++ .. ....-+...|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99 55666666653 3455665432 23334444467789999988776642 21 12233678899999887
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
+- +| .+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++..+.-. -.
T Consensus 1246 ln-------dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1246 LN-------DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred ee-------Cc--eeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence 65 33 5799998888888775542 223469999999998776 99999998887765433 26
Q ss_pred eEEEcCCCCEEEE
Q 001178 637 RLRFNKEGNLLVV 649 (1131)
Q Consensus 637 ~v~~sp~~~~l~~ 649 (1131)
.+.|+..|..++.
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 6788887876653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.9e-11 Score=134.70 Aligned_cols=196 Identities=18% Similarity=0.207 Sum_probs=149.2
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~l 424 (1131)
+.|....+.-+.+ .++.++.++.+.|||...+...... ..+... ...-+-++++.-++
T Consensus 88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i------------------~~~er~~l~~~~~~g~s~~~~~i 148 (967)
T KOG0974|consen 88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI------------------QSDERCTLYSSLIIGDSAEELYI 148 (967)
T ss_pred ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc------------------CCCceEEEEeEEEEeccCcEEEE
Confidence 3444455565665 4788888999999999877655421 011111 12223457777899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE-EecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF-QFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~-~~~~h~~~v~~ 502 (1131)
++|+.-+.|.+|+....+ . ...+.||.+.|.++.|+.||+ +++++|+|+++|+|+ .+++.+. ..-+|+.+|+.
T Consensus 149 ~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 999999999999998332 1 125789999999999999999 899999999999999 6665554 66789999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++|.+. .+++++.|-+.++|+....... .+..| ...+..++..++...+++++. |+.+++|+...
T Consensus 224 ~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 224 CCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 999763 8999999999999976544333 44444 347899999999999999987 99999999754
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=147.26 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=156.1
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~ 237 (429)
T PRK03629 179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 237 (429)
T ss_pred eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence 378888887654321 3356678999999999999987643 457999999887532 2
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CCeE
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKI 523 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i 523 (1131)
+....+.+..++|+|||+. ++++.+.++ .|++||..+..+..+..+...+....|+| +|+.|+..+. ++..
T Consensus 238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 2223334567899999995 333444444 58889955445555655555677778854 5677766654 4444
Q ss_pred EEE--eCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 524 KAW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 524 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
.+| |+.++.. ..+...........|+|||++++..+. .++...|++||+.+++... +.... ......|+|||+
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~-~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~ 386 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT 386 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc-cCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC
Confidence 555 6655433 233334445667899999999988764 2335679999998886543 33211 234578999999
Q ss_pred EEEEEEcCCc---EEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGEDNQ---IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+.++.++. ++++++. +.....+..+.. .+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 9999887764 6777774 444444544332 577888887
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-14 Score=147.88 Aligned_cols=278 Identities=16% Similarity=0.192 Sum_probs=213.8
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
-.-..+.++.+|++ ++.|+.-|.|-.+|+.+++...... -...|..+.|-.+.+++|++
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA 188 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA 188 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh
Confidence 35678899999996 6678889999999999998775321 23568899999999999988
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
- .+.+.|||-.+- .+.+ +..| ..|..+.|.|.-- +|++++..|.++.-| ..|+.+..+..-.+.+..++-+
T Consensus 189 Q-K~y~yvYD~~Gt-ElHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN 260 (545)
T KOG1272|consen 189 Q-KKYVYVYDNNGT-ELHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN 260 (545)
T ss_pred h-hceEEEecCCCc-EEee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence 4 567999997653 3432 3333 4689999999876 899999999999999 8899999998888888888876
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|-. ..+-+|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.+. |..+.|||++....+.++..
T Consensus 261 P~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 261 PYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred Ccc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-
Confidence 544 57889999999999999999999999999999999999999999999997 99999999998887776664
Q ss_pred cCCceEEEEEeCCCCEEEEEEcCCcEEEEE-cCCC--eEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 587 RKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 587 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
..+...+++|..| +++++....+.||. .-.+ ........|.....|..+.|.|-...|-+|...|.-.+.-...
T Consensus 334 -p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGs 410 (545)
T KOG1272|consen 334 -PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGS 410 (545)
T ss_pred -CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCC
Confidence 2256678888654 45555566799994 2221 2222222233334789999999877777776666555544333
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
|
T Consensus 411 G 411 (545)
T KOG1272|consen 411 G 411 (545)
T ss_pred C
Confidence 3
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.7e-13 Score=139.47 Aligned_cols=286 Identities=13% Similarity=0.127 Sum_probs=206.7
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
+++.+++...-+.+..||||+|++|+|..--.|++||+..-.....+. -....|.-.-+|.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLsD 104 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILSD 104 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEecc
Confidence 455678999999999999999999999999999999998755432110 1123455566666
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
|-..++.-..|.+|.+..--+ ... .+. -...-.+++++.-.-. |+.++....|+-.+ ..|+.+..|....+
T Consensus 105 D~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred chhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence 766666667788777654322 111 111 0112345566554443 34444445677778 88999988888889
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------C-----ceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------G-----LWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~-----~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.++++.+++.. .+|++|+.+|.|.+||.+.......+... . ..|+++.|+.+|-.+++|.. .|
T Consensus 177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G 250 (703)
T KOG2321|consen 177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TG 250 (703)
T ss_pred cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CC
Confidence 99999887644 58889999999999999876655433221 1 24999999999999999987 99
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCC--CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR--NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
.+.+||+++.+++..-......+|..+.|.+.+ +.+++ .+...++|||-.+|+....+.... .++.+++-|++.
T Consensus 251 ~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sG 326 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSG 326 (703)
T ss_pred cEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCc
Confidence 999999999888766554344467778886653 44444 455789999999999988876543 589999999999
Q ss_pred EEEEEECCCcEEEEecC
Q 001178 646 LLVVTTADQGIKILANA 662 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~ 662 (1131)
+++++-.++.+..|-+.
T Consensus 327 m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIP 343 (703)
T ss_pred eEEEecCCCcceeEEcc
Confidence 99999998887777654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-12 Score=128.97 Aligned_cols=261 Identities=11% Similarity=0.098 Sum_probs=167.4
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.+++|-|.+...++.+-.+-|.+|..+....... .++. ..++.... +......+|++|.|.+||
T Consensus 139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~--~s~~~~qv--l~~pgh~pVtsmqwn~dg 207 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRM--MSTHHLQV--LQDPGHNPVTSMQWNEDG 207 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------cccc--ccccchhh--eeCCCCceeeEEEEcCCC
Confidence 456789999999877777777777899998754221100 0000 00111111 111223789999999999
Q ss_pred CEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEE
Q 001178 846 SYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 846 ~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
..+++++ +..|.|||..++.++.......+.++-+.||| |+.+|..++-|+..++|+...........--.+.|...
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta 286 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA 286 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence 9999998 67899999999988776655567799999999 88999999999999999655433333333345689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCce-----------eeeee-------eecCCCCCCCCceEEEEcCCCcEEEEEeC
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEK-----------RKSIA-------IQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~-----------~~~~~-------~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 985 (1131)
.|+|+|++|..+... .=++|.+...+. ..... ..........++.+++|.|.|.+|++...
T Consensus 287 cWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 287 CWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred eecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 999999976544332 223443322110 00000 01111111267889999999999998532
Q ss_pred ---------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc---CCCEEEEEecCCcEEEEECC
Q 001178 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC---NSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 986 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~---dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
..|.+||......+............-..++|.| +|.+|..+=..|.+.-|++.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3467788776554443322211123355677776 56677777677888888753
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-08 Score=121.65 Aligned_cols=539 Identities=12% Similarity=0.097 Sum_probs=296.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEE----EecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLY----TYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
...+.|.++.|-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 445789999999999999999999999999 444432 21 1223456899999999999 5666666777776
Q ss_pred EeCCCc------------------------eeEEecC------------------------CccCeEEEeecccCCccEE
Q 001178 483 WDLSGR------------------------KLFQFEG------------------------HEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 483 wd~~~~------------------------~~~~~~~------------------------h~~~v~~~~~~~~~~~~~l 514 (1131)
...+-. .-..|.| +...-..++| .+||.++
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW--RGDG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW--RGDGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE--CCCCcEE
Confidence 542111 1111111 1112233444 7888999
Q ss_pred EEEec---C---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec---
Q 001178 515 FSTAV---D---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG--- 585 (1131)
Q Consensus 515 ~s~s~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--- 585 (1131)
++.+. . ..+++|+-+ +.....-....+--.+++|.|.|+++|+... ......|..|. ++|-....|.-
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCC
Confidence 98864 2 578999865 3322222222333457899999999999875 33356677776 45554444443
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE--EeccCCCCCcceEEEcCC-CCEEEEEECCCcEEEEecC
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS--TEAEGGLPSLPRLRFNKE-GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~ 662 (1131)
.....+..+.|++++..|+....|. |.+|...+-...-. +..... ..+..+.|+|. ...|.+.+.+|.+..+++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 2344788899999999999977665 99999888664332 332222 24556999994 4567777777887776653
Q ss_pred CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccC-CCC
Q 001178 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDIS-DKT 741 (1131)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d-~~v 741 (1131)
-....-. ..+|+ ..-.++-.| .++
T Consensus 380 ~~v~~s~-------------------------~~~~~------------------------------D~g~vaVIDG~~l 404 (928)
T PF04762_consen 380 WDVSRSP-------------------------GSSPN------------------------------DNGTVAVIDGNKL 404 (928)
T ss_pred EEEEecC-------------------------CCCcc------------------------------CceEEEEEeCCeE
Confidence 2100000 00010 000011111 223
Q ss_pred cceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCC
Q 001178 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1131)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1131)
.+-.+....-|.......+. ....|..++|++++..+++...||.+.+|.+............. .......
T Consensus 405 llTpf~~a~VPPPMs~~~l~----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~ 475 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLD 475 (928)
T ss_pred EEecccccCCCchHhceEEc----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhcccc
Confidence 33222222222222112211 34689999999999999999999999999876543221000000 0000000
Q ss_pred cccccCCCCCCCCCeeEEEecCCCCEEEEEeC----CeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGG----GKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
.............+..++|..+...++.... ..+.++++...+ ...........+..+...+ +...++.-.
T Consensus 476 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~ 553 (928)
T PF04762_consen 476 -SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQT 553 (928)
T ss_pred -cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEE
Confidence 0000001123556788899888877776653 458888874332 2333333345555555555 444466677
Q ss_pred CCCcEEEEEeeccee-EEeecccccCeeEEEEccCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEE
Q 001178 895 EDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTNL--NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~dg--~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v 971 (1131)
.+|.+..++...... +..+..-...+..+.+.... ..++.-+..|.+++ +. . .+. ..+++.
T Consensus 554 ~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la-------~~~tSF 617 (928)
T PF04762_consen 554 NDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA-------SNCTSF 617 (928)
T ss_pred CCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe-------cCCceE
Confidence 899888666544321 12232222222222222221 13444444444432 11 1 011 455666
Q ss_pred EEcCCCcEEEEEeCCeEEEEeCC-CcccceeeecCCC--CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCcee
Q 001178 972 QFHSDQVRLLVNHETQLAIYDGS-KMECIRQWVPQDV--LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 972 ~~s~d~~~l~~~~d~~i~vwd~~-~~~~~~~~~~~~~--~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1044 (1131)
.+. +..+|++.....+++.++. ............. ....+.. --.|..|+++-....=-|..+..|.+.
T Consensus 618 ~v~-~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~---VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 618 AVT-DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRR---VERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred EEE-cCEEEEEecCceEEEEECcCchhhcccccCcccccccccccc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence 664 2333445567778988888 1111111111000 0112222 236778888875556666788777643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=144.97 Aligned_cols=216 Identities=15% Similarity=0.235 Sum_probs=157.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.||++-|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+ -.||.+.|.++.|-|......++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 57899999999999999999999999999999999876654432 3689999999999997666589999999999999
Q ss_pred eCCC-----------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE----------EecCCCc
Q 001178 484 DLSG-----------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV----------DYDAPGL 542 (1131)
Q Consensus 484 d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------~~~~~~~ 542 (1131)
|++. .....+..|...|..++..+.. .+.+.+++.||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345566789999888876533 2789999999999999998732211 1111122
Q ss_pred eEEEEEEccCC-CEEEEEeecCCCCceEEEEeCCC--------Ce----------eeEEEe-ccc-------CC---ceE
Q 001178 543 WCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNESE--------GA----------LKRTYI-GFR-------KK---SAG 592 (1131)
Q Consensus 543 ~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~--------~~----------~~~~~~-~~~-------~~---~v~ 592 (1131)
...++.++|.. .+|++|+. +...++||.+. +. +++.|. +|- .. ..+
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred eeeeeeecCCCCceEEecCC----CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 56789999965 45666665 77888888421 11 122222 111 01 144
Q ss_pred EEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 593 VVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 593 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
-+.|+|+|.-|++.-..-.|+++|+..++.....
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 5889999987777666668999999887765543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-13 Score=138.68 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=105.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
...|...+|||||++||+.+ ||.++|||..+.+++..++..-+...|++||| |+++|++|++|.-|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 34788899999999999999 99999999999999888887778899999999 99999999999999999999999999
Q ss_pred eecccccCeeEEEEcc-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001178 912 KLKGHQKHITGLAFST-----------------------------------NL-------------NILVSSGSDAQLIF 943 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~-----------------------------------dg-------------~~l~s~~~Dg~v~l 943 (1131)
.-++|...|+.|+|.| ++ -++.++|.|-.+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999982 01 24778899999999
Q ss_pred EEcCCCc
Q 001178 944 WNTDTWE 950 (1131)
Q Consensus 944 wd~~~~~ 950 (1131)
||+....
T Consensus 449 WDlteD~ 455 (636)
T KOG2394|consen 449 WDLTEDV 455 (636)
T ss_pred Eecchhh
Confidence 9998644
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-12 Score=144.25 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=161.0
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||..+.... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 47888888654432 24577889999999999999998764 468999999887632
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG-- 521 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg-- 521 (1131)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||..+..+..+..+........|+| ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 34556677889999999995 4456666655 6777865666677777766666777754 5677766653 33
Q ss_pred eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 522 KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
.|++||+..+.... +......+....|+|||+.|+..... .+...|.+||..++.. +.+.. ...+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCC
Confidence 67788876654433 33334456678899999999987642 2346899999865543 33332 12456688999999
Q ss_pred EEEEEEcC------CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGED------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.|+..+.+ ..|+++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 88775542 3588888876554 3333222 356667776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-12 Score=144.10 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=156.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccce
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~ 446 (1131)
..|.+||...+... .+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-- 241 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-- 241 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence 46899998654332 244567789999999999999988743 46999999887632
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCe-
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGK- 522 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~- 522 (1131)
.+..+.+...+++|+|||+. ++++.+.++ .|++||..+..+..+..+.......+|+ ++++.|+..+ .+|.
T Consensus 242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~~ 316 (433)
T PRK04922 242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGRP 316 (433)
T ss_pred --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEEC--CCCCEEEEEECCCCCc
Confidence 23334455668899999995 344555555 5999995555556666666555667775 4567776665 4454
Q ss_pred -EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC
Q 001178 523 -IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN 601 (1131)
Q Consensus 523 -i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 601 (1131)
|.++++.+++... +..........+|+|||++++..+. .++...|.+||+.+++......+ . ......|+|+|+
T Consensus 317 ~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~--~-~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPG--S-LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCC--C-CCCCceECCCCC
Confidence 6666665554332 2233344557899999999988753 23345799999988776532222 1 334568999999
Q ss_pred EEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 602 RILAAGED---NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 602 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
+++..+.+ +.|++++...+ ....+..+.. .+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g--~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSADG--EVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCCC--CCCCCccCC
Confidence 88876653 45888888544 3444433222 466677776
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-12 Score=144.17 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=147.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCceE
Confidence 3567789999999999999987643 469999999876432 3334455678999999995 3456778887777
Q ss_pred Ee--CCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC--CCceeEEecCCCceEEEEEEccCCCEEE
Q 001178 483 WD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD--NVGSRVDYDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 483 wd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
|. ..+..+..+..+........|+ +||+.|+..+ .+|...+|.++ .+.. ..+...........|+|||++++
T Consensus 267 y~~d~~~~~~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 267 YTVNADGSGLRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred EEEECCCCCcEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEE
Confidence 76 5566667776666656667775 4567766555 35666777654 3322 22222333345678999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC---cEEEEEcCCCeEEEEEeccCCCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
..+.. .+...|++||+.+++....... .......|+|+++.|+.++.++ .+++.+. ++.....+..+.+ .
T Consensus 344 ~~s~~-~g~~~I~v~d~~~g~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~ 416 (427)
T PRK02889 344 YISRV-GGAFKLYVQDLATGQVTALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--D 416 (427)
T ss_pred EEEcc-CCcEEEEEEECCCCCeEEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--C
Confidence 87642 2245799999988875443322 1335678999999888876543 3555566 3544444443322 4
Q ss_pred cceEEEcC
Q 001178 635 LPRLRFNK 642 (1131)
Q Consensus 635 i~~v~~sp 642 (1131)
+...+|+|
T Consensus 417 ~~~p~wsp 424 (427)
T PRK02889 417 VREPSWGP 424 (427)
T ss_pred CCCCccCC
Confidence 67777876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-12 Score=137.24 Aligned_cols=262 Identities=12% Similarity=0.193 Sum_probs=195.7
Q ss_pred CccceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceee---ece----------------eecCCCCcccc
Q 001178 766 SASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAV---APQ----------------HWQPSNGLLMT 825 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~---~~~----------------~w~~~~~~~~~ 825 (1131)
+....+.+..+|||.++++.|. .-.|++||+..-....+....+.. .+. -+....|....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 5667788999999999998887 678999998765433222111111 000 01111121111
Q ss_pred cCCCCCCCCCeeEEEec-CCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 826 NDVPENAEDVVPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 826 ~~~~~~~~~~i~~l~~s-~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
..+ ...-..|+++ |...++++|+...|+-++++.|..+..+....+.+.++..++ -..+||+|+.+|.|..||.
T Consensus 130 ~RI----P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 130 TRI----PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eec----CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecc
Confidence 111 2223345553 455667777788899999999999999998889999999999 8889999999999999999
Q ss_pred ecceeEEeec------cccc-----CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 905 RVDEVKTKLK------GHQK-----HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 905 ~~~~~~~~~~------~h~~-----~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
.+...+..+. .|.+ .|+++.|+.||-.+++|..+|.|.|||+.+.+ ++....+....++..+.|
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVKDHGYELPIKKLDW 279 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeecccCCccceeeecc
Confidence 8765554443 3434 39999999999999999999999999999854 344455556688999999
Q ss_pred cCC--CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 974 HSD--QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 974 s~d--~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.+. +..+++.+...++|||-.+|+....+.+. ..+..+|+-|++.++++|-+++.+-.|-+...
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt----~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT----SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cccCCCceEEecchHHhhhcccccCCceeecccc----CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 766 55677777888999999999998887764 56999999999999999999988888876643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-11 Score=117.03 Aligned_cols=238 Identities=17% Similarity=0.250 Sum_probs=152.7
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE-EEc------CCcEEEEE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA-AGE------DNQIKFWD 616 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~------dg~i~iwd 616 (1131)
..+++|+.|...++++. +.-.++|+..--+....-..+.. .+..+.+--..++++. ||. .+.+.|||
T Consensus 8 ~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEEe
Confidence 45689999999888886 55578888764222111111111 1221212122345554 332 35799999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecc
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1131)
-...+++..+.... +|.++.+.++ .+++. ..+.|.+|...+..+..+.++....
T Consensus 82 D~k~~~i~el~f~~---~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N-------------------- 135 (346)
T KOG2111|consen 82 DLKERCIIELSFNS---EIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN-------------------- 135 (346)
T ss_pred cccCcEEEEEEecc---ceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC--------------------
Confidence 77777777776654 6899999875 34433 4679999998866555444332111
Q ss_pred cccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee
Q 001178 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1131)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1131)
|. ...+++-.
T Consensus 136 -Pk---------------------------------------------------------------------GlC~~~~~ 145 (346)
T KOG2111|consen 136 -PK---------------------------------------------------------------------GLCSLCPT 145 (346)
T ss_pred -CC---------------------------------------------------------------------ceEeecCC
Confidence 11 11111111
Q ss_pred cCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CC
Q 001178 777 NSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GG 854 (1131)
Q Consensus 777 ~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg 854 (1131)
.+...|+.-+. -|.+++-++...... ...+-..|...|.|++++.+|..+|+++ .|
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~----------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPN----------------------APSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcC----------------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 12222332222 366666655432221 0011126999999999999999999999 67
Q ss_pred e-EEEEECCCceeEEEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 855 K-VSLFNMMNFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 855 ~-i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
+ |||||..+|+.+.++.. ....|.+++||| +..+||++++.|++.|+.+..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 7 99999999999999873 345799999999 999999999999999999875
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.2e-10 Score=122.99 Aligned_cols=209 Identities=16% Similarity=0.218 Sum_probs=136.2
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCC-ceeEEE---Ee----------CCCCCeeEEEEeCCCCcEEEEEe-CC
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGM-ED 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~la~g~-~d 896 (1131)
.....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ..
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~ 165 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGA 165 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCC
Confidence 3445788999999999887 78899999876 433222 21 1234578999999 777666554 44
Q ss_pred CcEEEEEeecce--eE--Eeec-ccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecC-CCCC-CC
Q 001178 897 STIQIYNVRVDE--VK--TKLK-GHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTD--TWEKRKSIAIQLP-AGKL-PV 966 (1131)
Q Consensus 897 g~I~iwd~~~~~--~~--~~~~-~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~--~~~~~~~~~~~~~-~~~~-~~ 966 (1131)
..|++|+++... +. ..+. .....-..++|+||++++.... .+++|.++++. .+........... .... ..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 579999997654 21 2222 2334468899999999876655 47889999998 4432222222222 1111 13
Q ss_pred CceEEEEcCCCcEEEEEe--CCeEEEEeCCC--cc--cceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEEC-
Q 001178 967 GETRVQFHSDQVRLLVNH--ETQLAIYDGSK--ME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDA- 1038 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~--~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~- 1038 (1131)
....++++|||++|.++. .+.|.+|+++. +. .+..+... ......++|+|+|++|+++. .++.|.+|++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 678999999999999874 67899999942 32 23333322 45589999999999999988 5578999976
Q ss_pred -CCCceeeE
Q 001178 1039 -DSLRLRCR 1046 (1131)
Q Consensus 1039 -~~~~~~~~ 1046 (1131)
++|.+...
T Consensus 323 ~~tG~l~~~ 331 (345)
T PF10282_consen 323 PDTGKLTPV 331 (345)
T ss_dssp TTTTEEEEE
T ss_pred CCCCcEEEe
Confidence 46665433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-12 Score=142.84 Aligned_cols=222 Identities=11% Similarity=0.079 Sum_probs=144.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
..+...+.+.+|||||++++.+.. .+..|.+||+.+|+... +....+.+...+|||||
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSPDG 254 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECCCC
Confidence 346678999999999997554432 24579999998876432 11222334568999999
Q ss_pred CEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEEE--eCCCceeEEecC
Q 001178 422 NFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVW--DLSGRKLFQFEG 495 (1131)
Q Consensus 422 ~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iw--d~~~~~~~~~~~ 495 (1131)
+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+. |+..+ .++...|| |..+.....+..
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 988865 3344 5889999887532 24444556889999999994 54444 34444555 555544555554
Q ss_pred CccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+........|+ ++|+.|+..+.+ ..|.+||++++.... +.. ........|+|||++|+..+..+ +...+.++
T Consensus 329 ~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~-~~~~l~~~ 403 (429)
T PRK03629 329 EGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQG-MGSVLNLV 403 (429)
T ss_pred CCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCC-CceEEEEE
Confidence 44445566665 566777665543 358889988765443 222 12244678999999999987532 24468888
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeC
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
++ +|...+.+.++.. .+...+|+|
T Consensus 404 ~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 404 ST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EC-CCCCeEECccCCC-CcCCcccCC
Confidence 87 4555666665443 667777876
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=126.31 Aligned_cols=272 Identities=12% Similarity=0.172 Sum_probs=193.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEc-CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGC-GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
....|++++|--|++.=+..+. .+..+............. .|++. .......+|..++.. || .|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EE
Confidence 5568888888877764444454 566677777666555432 23332 234556677777665 33 56
Q ss_pred EEEeCCCeEEEEEecCCCccc-eeeeeecCcCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-CCCceeEEec------
Q 001178 425 GVAFTKHLIHLYTYQGSNDLC-QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRKLFQFE------ 494 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~~~~~~------ 494 (1131)
++|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++...+ .+++||.. ..+.||| ...+.+..-+
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 677889999999998543111 11123323 45777777776665 67779998 8899999 5554444332
Q ss_pred -CCccC--eEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 495 -GHEAP--VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 495 -~h~~~--v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
+-.-+ ++++.|.+..+...|++++.-+.+++||.+.+... ..+.....+++++...|+|++++++.. .+.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence 12223 34556665544689999999999999999876544 467777889999999999999999976 88999
Q ss_pred EEeCCCCeeeEE-EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 571 EWNESEGALKRT-YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 571 iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.+|.+.++.... +.+.. +.+.++..+|..+++++++-|+.+||+|+.+.+++....... .++++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence 999999998887 55544 489999999999999999999999999999977766554433 345555544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=141.46 Aligned_cols=225 Identities=17% Similarity=0.140 Sum_probs=144.0
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+...+.+.+|||||++++++...+ ..|.+||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3446778899999999999744443322 469999999886542 222334567899999
Q ss_pred CCCEEEE-EeCCCeEEEEEec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEec
Q 001178 420 DGNFIGV-AFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE 494 (1131)
Q Consensus 420 dg~~las-~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~ 494 (1131)
||+.|+. .+.++...||.+. ++. .. .+..|.+.+....|+|||+. +++++..++...||. ..+.....+.
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998874 5677776776654 433 22 34556666778899999995 233444456667776 4444443333
Q ss_pred CCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+........|+ ++|++|+..+.++ .|.+||+.++....... ........|+|||+.|+..+.. .+...+++
T Consensus 325 ~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~-~g~~~l~~ 399 (427)
T PRK02889 325 FTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ-GGRSVLAA 399 (427)
T ss_pred cCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec-CCCEEEEE
Confidence 222333345664 5667887766554 69999998766543222 2234678999999999988753 23456777
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.+. ++...+.+..+. +.+...+|+|
T Consensus 400 ~~~-~g~~~~~l~~~~-g~~~~p~wsp 424 (427)
T PRK02889 400 VSS-DGRIKQRLSVQG-GDVREPSWGP 424 (427)
T ss_pred EEC-CCCceEEeecCC-CCCCCCccCC
Confidence 776 455555554322 2556667776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-13 Score=139.53 Aligned_cols=232 Identities=14% Similarity=0.200 Sum_probs=190.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
...-..+.++.+|++|+.|+..|.|-.+|..++.... ++. -...|.++.|..+.+ + +.....+.++|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~-~AVAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--F-FAVAQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--H-HHhhhhceEEEecCCCc
Confidence 3456679999999999999999999999999976433 332 345699999998887 3 44456789999999999
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..++.| .+|..+.|-|.. -+|++++..|.++.-|+.+++....+....+.+..+.-+|-+..+-+|.. .|+
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99998865 468888886544 57888899999999999999988888888888999999998888888775 999
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEE
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV 648 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~ 648 (1131)
|.+|.....+++..+..|.+ +|.++++.++|.++++.+.|..++|||++....+.+..... ....+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-cee
Confidence 99999999998888888776 99999999999999999999999999999887766665422 56788888765 344
Q ss_pred EEECCCcEEEEe
Q 001178 649 VTTADQGIKILA 660 (1131)
Q Consensus 649 ~~~~dg~i~iw~ 660 (1131)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 4 4445788996
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=142.35 Aligned_cols=226 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcC--CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCG--DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+...+.+.+|||||++++.+... +..|.+||+.+++... +..+.+...+.+|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~ 255 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSF 255 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceE
Confidence 33444577889999999999964444322 3469999998876532 2233344567899
Q ss_pred cCCCCEEEE-EeCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCc--EEEEeCCCceeE
Q 001178 418 SPDGNFIGV-AFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKL--IRVWDLSGRKLF 491 (1131)
Q Consensus 418 spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~--i~iwd~~~~~~~ 491 (1131)
||||+.|+. .+.++ .|.+||+.+++.. .+..|.......+|+|||+. ++.++ .++. |.++|..+....
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeE
Confidence 999998764 44554 5999999887632 34556556678999999994 44443 4554 666664444344
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+.......+|+ ++|+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec-CCceE
Confidence 443333344456775 4667777655433 6899999776554 232 22234567999999999887753 34567
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
|++++.. +...+.+..+. +.+...+|+|
T Consensus 405 L~~~~~~-g~~~~~l~~~~-g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTD-GRVRQRLVSAD-GEVREPAWSP 432 (433)
T ss_pred EEEEECC-CCceEEcccCC-CCCCCCccCC
Confidence 9999885 44444444322 2455566665
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-11 Score=130.77 Aligned_cols=252 Identities=12% Similarity=0.120 Sum_probs=165.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-----cCCCC
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-----SPDGN 422 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-----spdg~ 422 (1131)
..+....++-.|+++..-- ...+++|+...+..+.. + +....+++. .-.|=+| .|+|-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-p------------i~k~~y~gt--~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-P------------IDKREYKGT--SPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-c------------hhhhcccCC--CCceecccccccCCCCc
Confidence 3566666777777754433 34789999886544321 1 111122222 2233333 35677
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
-|..|-.-|.|.+.|....+ +.+.+.... ....|+|+.|-|.+.. .++.+-.+|.++++|. .+....
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~---------~~~~~~ 255 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDK---------EIVCGA 255 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeec---------cccccC
Confidence 78888888999999876632 222111112 2468999999997776 6777778999999984 111122
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCC-CCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
+..++..-.++..+.... |... +...+..+......|...+|+|||++||+++. ||.++|+|..+.++
T Consensus 256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence 222222222223332221 1111 11333334444557999999999999999987 99999999998887
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
+..++..-+ ...|++|+|||++|++|++|.-|.||.+..++.+..- ++|...|..++|.
T Consensus 325 lg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG--qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 325 LGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG--QGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec--cccccceeeEeec
Confidence 776666555 7899999999999999999999999999988877654 4555588888887
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-10 Score=121.05 Aligned_cols=252 Identities=13% Similarity=0.181 Sum_probs=164.5
Q ss_pred ceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCC-CCcEEE
Q 001178 813 PQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ-DNNIIA 891 (1131)
Q Consensus 813 ~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-~~~~la 891 (1131)
+.+|+.+++......... .... ++..|+.|..+.|--..+.+.+|++.+.+.+.. +.|...|+.+.+||. ....+|
T Consensus 107 ~~v~~vet~~~~s~~q~k-~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKK-MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeeeccceehhheehh-hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 456777775443322221 2222 689999998877766789999999987443322 235678999999993 234454
Q ss_pred E-----EeCCCcEEEEEeecceeEEee---cccccCeeEEEEccCCCE---EEEEeCC---------CcEEEEEcCCCce
Q 001178 892 I-----GMEDSTIQIYNVRVDEVKTKL---KGHQKHITGLAFSTNLNI---LVSSGSD---------AQLIFWNTDTWEK 951 (1131)
Q Consensus 892 ~-----g~~dg~I~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~---l~s~~~D---------g~v~lwd~~~~~~ 951 (1131)
+ ++.-+.|+||.......-..+ .-....=..+.|++-|.- |++..-| .++++.++++...
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 3 344567999987632211110 001122345677776653 2333334 3688888873221
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.+.... .++|.++.|+|+++-+++.. --.+.|||++ +..+..+. .++-+++-|+|.|++|+.++
T Consensus 264 ----~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~-----egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 264 ----SVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP-----EGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred ----EEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC-----CCCccceEECCCCCEEEEee
Confidence 122221 27999999999998877743 5679999987 44444433 45788999999999999888
Q ss_pred ---cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCC
Q 001178 1029 ---TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSE 1095 (1131)
Q Consensus 1029 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~ 1095 (1131)
.-|.|-|||+.+.+++..+.... +..+.|+| ||.+|+|++. |+.++||+...
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a~~--------------tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKAAN--------------TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cCCCCCceEEEeccchhhccccccCC--------------ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecC
Confidence 44899999999988887776322 33589999 5667776665 78899999853
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-07 Score=113.42 Aligned_cols=449 Identities=14% Similarity=0.185 Sum_probs=256.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC--CC--eEEEEEecCCCccceeeeee-----cCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 410 ISVSRVAWSPDGNFIGVAFT--KH--LIHLYTYQGSNDLCQSLEID-----AHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~--d~--~i~vwd~~~~~~~~~~~~~~-----~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+...+|.+....+.++.. .. .|.+..............+. ...+.|.++.|.+|.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 46777888886654433332 22 23444333322122222332 2346799999999998 57777778888
Q ss_pred EEE----eCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----------------------Cce
Q 001178 481 RVW----DLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----------------------VGS 533 (1131)
Q Consensus 481 ~iw----d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----------------------~~~ 533 (1131)
.+. |.....+.....-...|.+++|+| |...|+..+.++++.+-+-+- ++.
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkK 177 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKK 177 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcc
Confidence 888 544444444444567899999966 447888888888887653110 000
Q ss_pred eEEecC------------------------CCceEEEEEEccCCCEEEEEeecCC-C-CceEEEEeCCCCeeeEEEeccc
Q 001178 534 RVDYDA------------------------PGLWCTTMLYSADGSRLFSCGTSKE-G-DSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 534 ~~~~~~------------------------~~~~v~~~~~s~~g~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
...|.+ ....-..++|..||.++|+.+.... + ...+++|+.+ |.+..+-.. .
T Consensus 178 eTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v 255 (928)
T PF04762_consen 178 ETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-V 255 (928)
T ss_pred cCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-C
Confidence 000100 1223467889999999998875332 2 4789999965 766554442 2
Q ss_pred CCceEEEEEeCCCCEEEEEEc---CCcEEEEEcCCCeEEEEEecc--CCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 588 KKSAGVVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
.+--.+++|-|.|+++++... ...|.+|.-+. -....+... .....|..+.|++|+..||+...|. |.+|-..
T Consensus 256 ~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 256 DGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred CCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 334556899999999988654 45677777543 332223222 2334789999999999999987665 9999865
Q ss_pred CCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCc
Q 001178 663 DGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTK 742 (1131)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~ 742 (1131)
+-.
T Consensus 334 NYH----------------------------------------------------------------------------- 336 (928)
T PF04762_consen 334 NYH----------------------------------------------------------------------------- 336 (928)
T ss_pred CCE-----------------------------------------------------------------------------
Confidence 541
Q ss_pred ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC-ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCC
Q 001178 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG-IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1131)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1131)
|-+. +.+.++ ....+..+.|+|.. ..|.....+|.+..+++. |+...+
T Consensus 337 -WYLK--------qei~~~----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s 385 (928)
T PF04762_consen 337 -WYLK--------QEIRFS----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS 385 (928)
T ss_pred -EEEE--------EEEEcc----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence 0000 000000 11122235566543 335555555666655432 111100
Q ss_pred cccccCCCCCCCCCeeEEEecC-CCCEEEEEeCCeEEEEECCCcee-----EEEEeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001178 822 LLMTNDVPENAEDVVPCVALSK-NDSYVMSAGGGKVSLFNMMNFKV-----MTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1131)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 895 (1131)
. ..+| |...+++.++.++.+-.+..... ...+. -...|.+++|++ ++..+|+-..
T Consensus 386 ~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~ 446 (928)
T PF04762_consen 386 P-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTS 446 (928)
T ss_pred C-----------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEEC
Confidence 0 0112 22234444455677766654322 22333 246799999999 6666889999
Q ss_pred CCcEEEEEeecceeE--------Eeec----------ccccCeeEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeee
Q 001178 896 DSTIQIYNVRVDEVK--------TKLK----------GHQKHITGLAFSTNLNILVSSGSD---AQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~--------~~~~----------~h~~~V~~l~~s~dg~~l~s~~~D---g~v~lwd~~~~~~~~~ 954 (1131)
||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++++...+....
T Consensus 447 d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 526 (928)
T PF04762_consen 447 DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSAS 526 (928)
T ss_pred CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCcee
Confidence 999999986543211 1111 123457888998887776666554 5788888744322111
Q ss_pred eeeecCCCCCCCCceEEEEcCCCc-EEEEEeCCeEEEEeCCCc
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQV-RLLVNHETQLAIYDGSKM 996 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~d~~i~vwd~~~~ 996 (1131)
..... .....+..+...++.. .++-..+|.+..++....
T Consensus 527 ~~~~~---~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 527 VESST---EVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEEe---ccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 11111 1113444555555555 344456888887666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-09 Score=117.86 Aligned_cols=235 Identities=14% Similarity=0.178 Sum_probs=159.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCc------------cceeeeeecCcCCeeEEEEecCCCceEEEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND------------LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
.......|++|+....++|+|+.||.++|-.+.+... +....++.||.+.|.-+.|+.+.+ .|-|.
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtS 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTS 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--ccccc
Confidence 4456789999999999999999999999998865321 112236789999999999998888 68899
Q ss_pred cCCCcEEEEe-CCCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc
Q 001178 475 GDDKLIRVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 475 s~d~~i~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
..+|.|.||- ..|.-...+. ...+.|.+++|+ .+|..+...-.||.|.+=.++.. .+.--...+.....+.|++
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn--~dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN--LDGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc--CCCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeecc
Confidence 9999999998 6665544332 234567888884 56677888888888766555432 2221122233456788999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCe-------eeEEEecc---cCCceEEEEE--------eCCCCEEEEEEcCCcEE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGA-------LKRTYIGF---RKKSAGVVQF--------DTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~-------~~~~~~~~---~~~~v~~~~~--------s~~~~~l~~~~~dg~i~ 613 (1131)
|.+.++.+-. .|.+.++|.+..- +.....+. ....+..+.| -|+.+.++++...|.+.
T Consensus 167 D~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 167 DLEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred cHHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 9988877655 7889999865321 10111100 0112333433 35778999999999988
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+-.-.+......+... -.+..+.|+++|..|++++.+
T Consensus 243 iMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCc
Confidence 8765543332233222 157888999999999988765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=137.87 Aligned_cols=225 Identities=14% Similarity=0.085 Sum_probs=147.7
Q ss_pred eeeccCCCcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 341 ACTMHQGSSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 341 ~~~~~h~~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.....|...|.+.+|||||++++.+.. .+..|.+||+.+++... +..+.+.+.+.+||
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S 254 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFS 254 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEEC
Confidence 334467889999999999997554432 24689999998876532 33455677889999
Q ss_pred CCCCEEEE-EeCCCe--EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CC--CcEEEEeCCCceeEE
Q 001178 419 PDGNFIGV-AFTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD--KLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 419 pdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d--~~i~iwd~~~~~~~~ 492 (1131)
|||+.|+. .+.++. |.+||+.++... .+..+.+.....+|+|||+. ++..+ .+ ..|++||..+.....
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCeEE
Confidence 99998764 455554 777788876532 35556666788999999995 44433 33 368888866666666
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCC--c
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD--S 567 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~--~ 567 (1131)
+..+...+....|+ ++|+.|+..+.+ ..|.+||+....... +. ....+....|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceEe-cc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 65555556667775 456777766543 367888876544322 22 223467889999999998876432221 4
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.++++|+..+.. ..+.. ...+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT--PGDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC--CCCccCcccCC
Confidence 788888866544 33332 22345556665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-11 Score=121.05 Aligned_cols=244 Identities=10% Similarity=0.149 Sum_probs=180.4
Q ss_pred CCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEecCCCcccee---eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 408 SSISVSRVAWSPDGN--FIGVAFTKHLIHLYTYQGSNDLCQS---LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 408 h~~~V~~~~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~---~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
....|+.++|.-|++ .|...+.|..+.........+.... .....-.++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888887665 4555556777777777665543321 1233456677777765 44 4899999999999
Q ss_pred EeCC-----CceeEEecCCccCeEEEeecccCCccEEEEEecC--CeEEEEeCCCCceeEEecCC---------CceEEE
Q 001178 483 WDLS-----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAP---------GLWCTT 546 (1131)
Q Consensus 483 wd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~---------~~~v~~ 546 (1131)
|... ...+..+..+ ..+..+.-++ ....++++|+.. ..+.+||++...+++.-... .-++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~-~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTD-TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCC-CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9933 3344444433 3444454433 233577779998 88999999988665533221 126789
Q ss_pred EEEccC--CCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 547 MLYSAD--GSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 547 ~~~s~~--g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
+.|.+. ...+++++. -+++++||.+.++ ++..|.-.. .++.++...|+++++++|..-|.+..||++.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E-~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE-NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc-CcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 999988 888999986 8899999998754 566666544 48999999999999999999999999999999887
Q ss_pred EE-EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 624 TS-TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 624 ~~-~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. +.... +.|.++..+|.++++++++-|..+||+|+.+.
T Consensus 283 g~~~kg~t--Gsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGIT--GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCcc--CCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 66 44333 37999999999999999999999999999885
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-09 Score=109.18 Aligned_cols=143 Identities=11% Similarity=0.116 Sum_probs=114.0
Q ss_pred CCCCCeeEEEecCCCCEEEEEe-CC-eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 831 NAEDVVPCVALSKNDSYVMSAG-GG-KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
++...|+-..+..+++-++.|. || .+-|||..+++..+. ...-+.|.++..++ +|++++++.....+.++|++++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCC
Confidence 4566677778888888888887 66 799999998876544 44567899999999 89999999999999999999998
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
....-+...+-|+..+|+|+++++|-+--+| .|+++|+.+++.-.. ..+. ..-.+-+|.||+++|..
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v---TT~t----a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV---TTPT----AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe---cCCc----ccccCcccCCCCcEEEE
Confidence 7766666778899999999999999987776 689999998664221 1222 23456789999998875
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-11 Score=119.83 Aligned_cols=343 Identities=13% Similarity=0.221 Sum_probs=217.4
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE-cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD-MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
.+++.+.|+.+ .++....-|..+-+++.++|.++++|- .+.++.-..+... ...+++++.+.++...|++|-.+|++
T Consensus 15 ~ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~-mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 15 ELLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY-MPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh-CCCCceEeeeeccceEEEEEEecceE
Confidence 34556677665 666666677778899999999999995 4445544444332 23368999999999999999999999
Q ss_pred EEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccc
Q 001178 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1131)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 736 (1131)
.-+.+..........
T Consensus 93 tefs~sedfnkm~~~----------------------------------------------------------------- 107 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFL----------------------------------------------------------------- 107 (404)
T ss_pred EEEEhhhhhhhcchh-----------------------------------------------------------------
Confidence 888765432111100
Q ss_pred cCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceee
Q 001178 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1131)
Q Consensus 737 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1131)
+.| ..|...+..+.|+-.-.++++.+.|..+. |.-..
T Consensus 108 -----r~~-------------------~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e------------------ 144 (404)
T KOG1409|consen 108 -----KDY-------------------LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE------------------ 144 (404)
T ss_pred -----hhh-------------------hhhhcceeeEEecCCceeEEEeccccceE-EEeec------------------
Confidence 000 22778888888888888888888886553 22111
Q ss_pred cCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE--CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE
Q 001178 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN--MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1131)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 893 (1131)
.|..+-... ......++.+.-. +...|. .|.|.+-. ......+.++.+|.+.+.+++|.+ ...+|.+|
T Consensus 145 ---~~~~lg~Y~---~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg 215 (404)
T KOG1409|consen 145 ---SGNRLGGYN---FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSG 215 (404)
T ss_pred ---cCCcccceE---eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEec
Confidence 011000000 0011111111111 333444 45555443 345677888999999999999999 88999999
Q ss_pred eCCCcEEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-------------
Q 001178 894 MEDSTIQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL------------- 959 (1131)
Q Consensus 894 ~~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~------------- 959 (1131)
..|..|.+||+--.+ ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+....+.......
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn 295 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWN 295 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHH
Confidence 999999999997553 345788999999999999888999999999999999988644322111100
Q ss_pred ------------CCCC---CCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccce----eeecCCCCCCCeEEEEEccC
Q 001178 960 ------------PAGK---LPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR----QWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 960 ------------~~~~---~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~v~~i~~s~d 1020 (1131)
..++ ....+...+-+....+...+..-.+|+-|.-...... .+...+.....|+++.+-.+
T Consensus 296 ~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqet 375 (404)
T KOG1409|consen 296 FRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQET 375 (404)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhh
Confidence 0000 0012222222333333333444445555432111110 01111122468999999999
Q ss_pred CCEEEEEecCCcEEEEECC
Q 001178 1021 SQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~ 1039 (1131)
-.+|+|++.|+.|+|||+.
T Consensus 376 lglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 376 LGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred ccceeecCCceEEEEEech
Confidence 8999999999999999976
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=120.75 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=167.5
Q ss_pred CCCeeEEEecCCCCEEEEEeC-----CeEEEEECCCc--e--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEE
Q 001178 833 EDVVPCVALSKNDSYVMSAGG-----GKVSLFNMMNF--K--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIY 902 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~d-----g~i~vwd~~~~--~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iw 902 (1131)
......++++|++++|.+... +.|..|++... + .+.+..........++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 445567899999999998863 57888887753 3 3444443455677899999 777777765 58999999
Q ss_pred Eeec-ceeEEe---ec----------ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCc--eeeeeeeecCCCCCC
Q 001178 903 NVRV-DEVKTK---LK----------GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWE--KRKSIAIQLPAGKLP 965 (1131)
Q Consensus 903 d~~~-~~~~~~---~~----------~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~--~~~~~~~~~~~~~~~ 965 (1131)
++.. +.+... +. .......++.|+|||+++++... ...|.+|+++... ......+..+.+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 433222 11 12244678999999998887643 3469999998755 222223333333
Q ss_pred CCceEEEEcCCCcEEEEEe--CCeEEEEeCC--Ccc--cceeeecC---CCCCCCeEEEEEccCCCEEEEEe-cCCcEEE
Q 001178 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGS--KME--CIRQWVPQ---DVLSSPISSAAYSCNSQLIYATF-TDGSIGV 1035 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~--~~~~~~~~---~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~v 1035 (1131)
.....++|+|+++++.+.. ++.|.+|++. ++. .+..+... .........|+++|||++|+++. .++.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998864 7889999888 332 22222211 11123688999999999999888 4578999
Q ss_pred EECC--CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCcccccccc
Q 001178 1036 FDAD--SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1036 wd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~w~~~~ 1104 (1131)
|+++ +|++ ..+.... .....|..+.++|+ +++|+++. .++.|.+|++....+++....
T Consensus 272 f~~d~~~g~l-~~~~~~~---------~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 272 FDLDPATGTL-TLVQTVP---------TGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEECTTTTTE-EEEEEEE---------ESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEecCCCce-EEEEEEe---------CCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 9993 3443 2222111 12244667999994 56666555 677999999987777665543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-09 Score=109.65 Aligned_cols=281 Identities=11% Similarity=0.090 Sum_probs=183.4
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeec---ceeeEEeecCCCCCCCCccceeeece
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN---GVQKLWKWNRTEQNPSGKATAAVAPQ 814 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 814 (1131)
++.|..|++...... +..+.........+-++++|+++.|.++..+ |.+..|.+
T Consensus 15 s~gI~v~~ld~~~g~-----l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------ 71 (346)
T COG2706 15 SQGIYVFNLDTKTGE-----LSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------ 71 (346)
T ss_pred CCceEEEEEeCcccc-----cchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE------------------
Confidence 467888888742221 1112223366778889999999999988765 55555543
Q ss_pred eecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCC-ceeEEE--EeCCCCC----------eeE
Q 001178 815 HWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN-FKVMTT--FMSPPPA----------STF 879 (1131)
Q Consensus 815 ~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 879 (1131)
|..+|++...........+...++++++|++++++. .|.|.++-+.. |.+... +..|.+. +..
T Consensus 72 --D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 72 --DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 444454433222222344458899999999999998 68999999865 433221 2223333 888
Q ss_pred EEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeec---ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCC--cee
Q 001178 880 LAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTW--EKR 952 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~--~~~ 952 (1131)
..|.| ++++|++.+- --.|.+|++..|++...-. .....-..|.|+|++++.....+ +++|.+|..+.. +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 7877776643 3469999999876533211 22344688999999999777665 899999999884 221
Q ss_pred eeeeeecCC--CCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCc-ccceeeecCCCCCCCeEEEEEccCCCEEEEE
Q 001178 953 KSIAIQLPA--GKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 953 ~~~~~~~~~--~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
....+.... -........|..++||++|.++. ...|.+|.+... ..+........+...-..+.|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 111111111 11225778899999999999975 347888887643 2222222222234557899999999999999
Q ss_pred ecC-CcEEEEECC--CCcee
Q 001178 1028 FTD-GSIGVFDAD--SLRLR 1044 (1131)
Q Consensus 1028 ~~d-g~i~vwd~~--~~~~~ 1044 (1131)
.++ ..|.+|..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 965 568888664 55543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-09 Score=115.65 Aligned_cols=369 Identities=12% Similarity=0.129 Sum_probs=221.8
Q ss_pred EEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE
Q 001178 524 KAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
.+|...+......+....-++..+++||.|++|++.. ...|.+|....+..+..+. +. .|.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~--~~-~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFR--HP-DVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeee--cC-CceecccCccccee
Confidence 4455544444444444556789999999999999875 4569999987776555554 22 68889999999999
Q ss_pred EEEEcC---------------CcEEEEEcCCCeEEEEEeccCCCCCcc-eEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 604 LAAGED---------------NQIKFWDMDNVNMLTSTEAEGGLPSLP-RLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 604 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~i~-~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
.+-+.. +.+.+||..++..+..+.......... -+.|+-+..++|-. ....+.|+++.....
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~- 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE- 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc-
Confidence 986543 359999999999998887654422233 67888888877655 345788998632211
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee-----ccccCCCCc
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN-----LEDISDKTK 742 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~d~~v~ 742 (1131)
.. .... ++ ..++.-.++||. + +...++ ..+..+.++
T Consensus 165 ~~-----p~~~------lr-~~gi~dFsisP~--------------------~-------n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 165 EH-----PFKN------LR-PVGILDFSISPE--------------------G-------NHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred cC-----chhh------cc-ccceeeEEecCC--------------------C-------CCceEEEEccccCCCCcEEE
Confidence 00 0000 00 111222244444 0 000001 223345566
Q ss_pred ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCc
Q 001178 743 PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1131)
Q Consensus 743 ~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1131)
+|.+...........+. ..-..+-|.+.|+++++.....+ +. .........+.+.+.. ++
T Consensus 206 i~sIp~~s~l~tk~lfk--------~~~~qLkW~~~g~~ll~l~~t~~-ks----------nKsyfgesnLyl~~~~-e~ 265 (561)
T COG5354 206 ILSIPKNSVLVTKNLFK--------VSGVQLKWQVLGKYLLVLVMTHT-KS----------NKSYFGESNLYLLRIT-ER 265 (561)
T ss_pred EEEccCCCeeeeeeeEe--------ecccEEEEecCCceEEEEEEEee-ec----------ccceeccceEEEEeec-cc
Confidence 66655322111111111 12245777788887765433211 00 0000000111222222 11
Q ss_pred ccccCCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---
Q 001178 823 LMTNDVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--- 896 (1131)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--- 896 (1131)
-+.... ...++|...+|.|+++.+++.+ .-.+.++|+.+. .. +..+...-..+.|+| .++++++++-|
T Consensus 266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~ 339 (561)
T COG5354 266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQ 339 (561)
T ss_pred ccceec--cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccc
Confidence 111111 3478999999999999888766 577999999876 32 233455667788999 78888776655
Q ss_pred CcEEEEEeecceeE-EeecccccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCCCCCce
Q 001178 897 STIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 g~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
|.|.+||....... ..+.+-. .+-+.|+||++++.+... |..++|||+....- ...+
T Consensus 340 gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--------------fel~ 403 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--------------FELT 403 (561)
T ss_pred cceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--------------hhhh
Confidence 68999998765433 3555433 345689999999887643 78899999987331 2456
Q ss_pred EEEEcCCCcEEEEE
Q 001178 970 RVQFHSDQVRLLVN 983 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~ 983 (1131)
.+.|.|.|++..+.
T Consensus 404 ~~~W~p~~~~~tts 417 (561)
T COG5354 404 NITWDPSGQYVTTS 417 (561)
T ss_pred hccccCCcccceee
Confidence 78888888876663
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-10 Score=118.37 Aligned_cols=353 Identities=13% Similarity=0.156 Sum_probs=209.8
Q ss_pred eEEEEeCCCCceeE-EecC--CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 522 KIKAWLYDNVGSRV-DYDA--PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 522 ~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.+.+|......... .+.. ....++..+++++|++++.+. +..+.|++..++..+.+... . .+..+.|+|
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP 83 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL--K-KTYDLLFSP 83 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc--c-eeeeeeecc
Confidence 45666554322222 2222 234578899999999999886 67899999888865444443 2 577899999
Q ss_pred CCCEEEEE-----Ec-----CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhh
Q 001178 599 TRNRILAA-----GE-----DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 599 ~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
.+.+|.+- .. .-.+.+|++.++.....+...... -.+..|++|..+.+ --..+.+.+|+..+.....
T Consensus 84 ~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~ 160 (566)
T KOG2315|consen 84 KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ 160 (566)
T ss_pred cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCcccee
Confidence 99888762 12 234779999996665555544332 25788988875443 3345689999986632222
Q ss_pred hhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeec
Q 001178 669 RAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTE 748 (1131)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~ 748 (1131)
..+.. .++....+||. +......+ -..-..+.-..+++|....
T Consensus 161 ~kl~~---------------~~i~~f~lSpg-----------p~~~~vAv-----------yvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 161 HKLSV---------------SGITMLSLSPG-----------PEPPFVAV-----------YVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred eeeec---------------cceeeEEecCC-----------CCCceEEE-----------EccCCCCCCcEEEEecccc
Confidence 21111 11112233332 00000000 0001223335566776652
Q ss_pred cc--CCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc
Q 001178 749 IV--DPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1131)
Q Consensus 749 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1131)
.. .....+.+ ....=..+.|++-|..|++.... |++....+.-|. .++.+.+.+ |.-...
T Consensus 204 ~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLast------dVDktn~SYYGE----q~Lyll~t~-g~s~~V 265 (566)
T KOG2315|consen 204 EGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLAST------DVDKTNASYYGE----QTLYLLATQ-GESVSV 265 (566)
T ss_pred ccccchhhhccc-------cccceeEEEeccCCceEEEEEEE------eecCCCcccccc----ceEEEEEec-CceEEE
Confidence 11 11111111 12223456777777655544321 111111111111 122233333 222222
Q ss_pred CCCCCCCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---CcEE
Q 001178 827 DVPENAEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---STIQ 900 (1131)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g~I~ 900 (1131)
.+ ...++|.++.|+++|+-++++. -.++.|||+.. ..+..+ ..++-.++-|+| .|++|+.++-+ |.|.
T Consensus 266 ~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 266 PL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred ec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 23 3588999999999999888776 37899999863 444444 467778999999 78887776654 7899
Q ss_pred EEEeecceeEEeecccccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCC
Q 001178 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDT 948 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~ 948 (1131)
|||+.+.+++..+..-. -+-..|+|||++++|+.. |..++||++..
T Consensus 340 vwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 340 VWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999988888877544 355789999999999875 78899999876
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-09 Score=111.17 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=131.5
Q ss_pred eEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeE--
Q 001178 837 PCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK-- 910 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~-- 910 (1131)
..++++|||+++.+.. +..|.+.|+.+++.+.++....+ ..-...++ ++.+ +-+.||......+.+ ++..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence 3578899999988776 57899999999999998876432 22222222 2222 223444444433321 2211
Q ss_pred --EeecccccCee-EEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcEE
Q 001178 911 --TKLKGHQKHIT-GLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 911 --~~~~~h~~~V~-~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l 980 (1131)
..+.+-..++. .-.|++ ||+++..... |+|.+-|+...+........... +-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 01111001110 014566 7888777666 99999997664433332222211 1122444559999999998
Q ss_pred EEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEe
Q 001178 981 LVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 981 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1047 (1131)
.+.. .+.|.++|..+++.+..+... ..+..++|+|||+ +|++.. .++.|.++|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8732 257999999999999988764 5899999999999 888777 5788999999999999887
Q ss_pred c
Q 001178 1048 A 1048 (1131)
Q Consensus 1048 ~ 1048 (1131)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-11 Score=116.97 Aligned_cols=155 Identities=14% Similarity=0.225 Sum_probs=108.1
Q ss_pred eEEEEeCCCCcEEEEEeC----------CCcEEEEEeec-ceeEEeecc-cccCeeEEEEccCCCEEEEE--eCCCcEEE
Q 001178 878 TFLAFHPQDNNIIAIGME----------DSTIQIYNVRV-DEVKTKLKG-HQKHITGLAFSTNLNILVSS--GSDAQLIF 943 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~----------dg~I~iwd~~~-~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~--~~Dg~v~l 943 (1131)
..+.|+| .|..|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4567888 5554443322 13455665532 233333432 34679999999999987654 45789999
Q ss_pred EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc
Q 001178 944 WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 944 wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
||++. +.. .... ......+.|+|+|++|++++ .|.+.+||..+.+.+..... ..++.++|||
T Consensus 88 yd~~~-~~i----~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-KKI----FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH-----SDATDVEWSP 153 (194)
T ss_pred EcCcc-cEe----Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc-----CcEEEEEEcC
Confidence 99973 221 1111 14567899999999999864 47799999998888877543 3579999999
Q ss_pred CCCEEEEEec------CCcEEEEECCCCceeeEec
Q 001178 1020 NSQLIYATFT------DGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1020 dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 1048 (1131)
||++++++.. |+.++||++. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999984 7899999985 66665544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=116.35 Aligned_cols=262 Identities=12% Similarity=0.203 Sum_probs=174.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc--CCCCCEEEEEEcCCCC-
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK--DSSISVSRVAWSPDGN- 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~~~~spdg~- 422 (1131)
..+-|.++.|...|. +||+|..+|.|.++.-..... ..++++... .++......++ .-...|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~---~ey~~~t~f-qshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK---GEYNFQTEF-QSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc---cceeeeeee-eccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 456899999999998 599999999999997543222 112211000 00000000111 1235789999999765
Q ss_pred -EEEEEeCCCeEEEEEecCCCccc--------------------------------eeee-eecCcCCeeEEEEecCCCc
Q 001178 423 -FIGVAFTKHLIHLYTYQGSNDLC--------------------------------QSLE-IDAHVGGVNDLAFSYPNKQ 468 (1131)
Q Consensus 423 -~las~~~d~~i~vwd~~~~~~~~--------------------------------~~~~-~~~h~~~V~~l~~s~d~~~ 468 (1131)
.+...+.|++|++|.+....... +... -.+|+.-|+++.++.|+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 56667789999999886432111 0011 246888899999999998
Q ss_pred eEEEEEcCCCcEEEEe--CCCce--eEEecCC-----ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce------
Q 001178 469 LCIVTCGDDKLIRVWD--LSGRK--LFQFEGH-----EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS------ 533 (1131)
Q Consensus 469 ~~l~s~s~d~~i~iwd--~~~~~--~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 533 (1131)
.++|+ +|=.|-+|+ +..+. +..++.+ +.-|++..|+|..- +.++-.+..|+|++.|++....
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 55555 577899999 44333 2333333 34578888988654 6777788899999999984211
Q ss_pred eEE----------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC-CCCeeeEEEecccC-----------Cce
Q 001178 534 RVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE-SEGALKRTYIGFRK-----------KSA 591 (1131)
Q Consensus 534 ~~~----------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~-----------~~v 591 (1131)
... +...-..|..+.|+.+|+++++-. --+|.+||+ ...+++.++..|.. ..|
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 111 111122588999999999999874 468999999 55677777766532 112
Q ss_pred ---EEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 592 ---GVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 592 ---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.-++|+.++.++++|+..+.+++++...|.
T Consensus 330 fdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 330 FDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 237899888999999999999999966543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.6e-10 Score=127.86 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=141.5
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--c
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 479 (1131)
+..+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 33566789999999999999887644 369999998876322 3333344667899999995 334555555 5
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+.....+..+........|++ +++.|+..+ .+| .|+++++.+++... +...........|+|||+.+
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 8888955555566666665566667754 556665544 333 57777776655332 22222334467899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEEeccCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+.... .++...|.+||+.+++....... . ......|+|+|+.++..+.+ ..|+++++..+ ....+....+
T Consensus 346 ~~~~~-~~~~~~l~~~dl~tg~~~~lt~~--~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g-- 418 (430)
T PRK00178 346 VMVHR-QDGNFHVAAQDLQRGSVRILTDT--S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQG-- 418 (430)
T ss_pred EEEEc-cCCceEEEEEECCCCCEEEccCC--C-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCC--
Confidence 88764 22345799999988765332222 1 22245799999988876643 34777777543 3333332222
Q ss_pred CcceEEEcC
Q 001178 634 SLPRLRFNK 642 (1131)
Q Consensus 634 ~i~~v~~sp 642 (1131)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456667776
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-09 Score=113.21 Aligned_cols=327 Identities=12% Similarity=0.202 Sum_probs=195.1
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-----------cCCcE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-----------EDNQI 612 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i 612 (1131)
-+-+.|||-|.||++-. ..-|.+|--.+...++.|. |. .+.-+.|||..++|++-+ +...+
T Consensus 213 etyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~--Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFY--HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhcc--CC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 46789999999999987 4568999877766666665 22 588899999999999854 23679
Q ss_pred EEEEcCCCeEEEEEeccCCC-CCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcc
Q 001178 613 KFWDMDNVNMLTSTEAEGGL-PSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~-~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1131)
.|||+.+|.....+...... ..-.-..||.|++++|.-.. ..|.||+...- ..+...
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~K----------------- 342 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKK----------------- 342 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeeccc-----------------
Confidence 99999999988877653221 12345689999999988776 46778875321 000000
Q ss_pred ceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceE
Q 001178 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1131)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1131)
.-.-..|.
T Consensus 343 ------------------------------------------------------------------------slki~gIr 350 (698)
T KOG2314|consen 343 ------------------------------------------------------------------------SLKISGIR 350 (698)
T ss_pred ------------------------------------------------------------------------ccCCcccc
Confidence 00223455
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
.+.|+|.+..|+. |. +.+.. ...
T Consensus 351 ~FswsP~~~llAY---------wt----------------------pe~~~---------~pa----------------- 373 (698)
T KOG2314|consen 351 DFSWSPTSNLLAY---------WT----------------------PETNN---------IPA----------------- 373 (698)
T ss_pred CcccCCCcceEEE---------Ec----------------------ccccC---------Ccc-----------------
Confidence 5666666543332 21 11000 011
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEE----------EeCCCcEEEEEeecceeEEeecccccCee
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI----------GMEDSTIQIYNVRVDEVKTKLKGHQKHIT 921 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~----------g~~dg~I~iwd~~~~~~~~~~~~h~~~V~ 921 (1131)
.+.+..+.+++.+++-..+.-.-..+-|-. +|.+|+. ++.=..+.|+.+.........-.-...|.
T Consensus 374 ---rvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 374 ---RVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred ---eEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 122222222222222221111111122222 3333332 22223466666665432222222456799
Q ss_pred EEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE----eCCeEEEEeCC
Q 001178 922 GLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN----HETQLAIYDGS 994 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~----~d~~i~vwd~~ 994 (1131)
..+|-|.|+.+++.+. ..++.+|.+++..... ..+..... .....+.|+|.|++++++ ..|.+..||..
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~-~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP-SLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCch-hhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 9999999988776554 3578999888522111 11111111 456789999999999874 47889999998
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEec------CCcEEEEECCC
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT------DGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~------dg~i~vwd~~~ 1040 (1131)
...+...-.+. -...+.+.|.|.|+|+++++. |...++|+.+.
T Consensus 526 ~a~~k~~~~~e---h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 526 YADLKDTASPE---HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred hhhhhhccCcc---ccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 54433332222 246788999999999999983 56677777653
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-10 Score=110.80 Aligned_cols=359 Identities=15% Similarity=0.222 Sum_probs=212.4
Q ss_pred cCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCc----eeEEecCCc------------cCeEEEeecccCCccEEE
Q 001178 454 VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGR----KLFQFEGHE------------APVYSVCPHQKENIHFIF 515 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 515 (1131)
..-|.++.|..+|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34589999999999 899999999999998 2222 223333333 357778888888888899
Q ss_pred EEecCCeEEEEeCCCCceeEE-----ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc
Q 001178 516 STAVDGKIKAWLYDNVGSRVD-----YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1131)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1131)
..+.|++|++|.+........ .......++++..- +.+.. +-.+ ...+.+.+...|..-
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~----~~~v------ea~prRv~aNaHtyh 166 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRH----DLEV------EASPRRVYANAHTYH 166 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccc----ccee------eeeeeeeccccceeE
Confidence 999999999998876544331 01111122222110 00000 0000 122344555445557
Q ss_pred eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe-EEEE--EeccC---CCCCcceEEEcCC-CCEEEEEECCCcEEEEecCC
Q 001178 591 AGVVQFDTTRNRILAAGEDNQIKFWDMDNVN-MLTS--TEAEG---GLPSLPRLRFNKE-GNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~--~~~~~---~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~~~ 663 (1131)
++++.++.|+..++++ +|=.|.+|++.--. .... ++.+. -..-|++..|+|. -++++..+..|+|++-|+..
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 8899999999888876 56789999986422 1111 11111 1124788899994 46777888899999999864
Q ss_pred CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcc
Q 001178 664 GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKP 743 (1131)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~ 743 (1131)
..-+.. .-++
T Consensus 246 ~aLCd~----------------------------------------------------------------------hsKl 255 (433)
T KOG1354|consen 246 SALCDA----------------------------------------------------------------------HSKL 255 (433)
T ss_pred hhhhcc----------------------------------------------------------------------hhhh
Confidence 310000 0000
Q ss_pred eeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcc
Q 001178 744 WELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLL 823 (1131)
Q Consensus 744 w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 823 (1131)
+.... . |...
T Consensus 256 fEepe-------------------d--------p~~r------------------------------------------- 265 (433)
T KOG1354|consen 256 FEEPE-------------------D--------PSSR------------------------------------------- 265 (433)
T ss_pred hcccc-------------------C--------Ccch-------------------------------------------
Confidence 00000 0 0000
Q ss_pred cccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEEC-CCceeEEEEeCCCC------------C---eeEEEEeCCCC
Q 001178 824 MTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNM-MNFKVMTTFMSPPP------------A---STFLAFHPQDN 887 (1131)
Q Consensus 824 ~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~-~~~~~~~~~~~~~~------------~---i~~l~~s~~~~ 887 (1131)
.+..+-...|..+.|+++|+|+++-+--+|++||+ -..+.+.++..|.. . -..++|+- ++
T Consensus 266 ---sffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~ 341 (433)
T KOG1354|consen 266 ---SFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-ND 341 (433)
T ss_pred ---hhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-Cc
Confidence 00012345677889999999999888789999998 34556666654421 1 23568888 78
Q ss_pred cEEEEEeCCCcEEEEEeecceeE-EeecccccC--eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVK-TKLKGHQKH--ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKL 964 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~-~~~~~h~~~--V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 964 (1131)
.++++|+....+++|+...|... .++...... ...+ ..-+.+.+++......+|-- ....
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd--------------~ldf 404 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVD--------------ALDF 404 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccc--------------hhhh
Confidence 89999999999999997766432 222222211 1111 01123444444433222210 0011
Q ss_pred CCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 965 PVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 965 ~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
...+...+|+|....+|++..+.++||.
T Consensus 405 ~kkilh~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 405 RKKILHTAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred hhHHHhhccCCccceeeeeecCceEEec
Confidence 1345667999999999998888888764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-10 Score=126.92 Aligned_cols=223 Identities=15% Similarity=0.112 Sum_probs=140.2
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 479 (1131)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++.. . +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~---lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-K---VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-E---ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 33556788999999999999887543 26888999887632 1 2222333457899999995 3445566665
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+..+..+..+.......+|++ |++.|+..+ .++ .|.++|+++++... +...........|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777855555666666666666777765 556665544 344 45556766554332 22233334457899999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc-CC--cEEEEEcCCCeEEEEEeccCCCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE-DN--QIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+..+.. .+...|.++|+.+++....... . ......|+|+|+.|+..+. ++ .+++++.. +.....+.....
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTST-R--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCC--
Confidence 887642 2345788889888765432221 1 1223479999998877554 33 37777864 555555543322
Q ss_pred CcceEEEcC
Q 001178 634 SLPRLRFNK 642 (1131)
Q Consensus 634 ~i~~v~~sp 642 (1131)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466777876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=125.94 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=141.2
Q ss_pred CCCcEEEEEEecCCCc--EEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHT--LLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~--llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
....+.+-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 4556677899999976 333554443 58888888876543 22233445568999999
Q ss_pred CEEEEEeC-----CCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--C--CCceeE
Q 001178 422 NFIGVAFT-----KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--L--SGRKLF 491 (1131)
Q Consensus 422 ~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~--~~~~~~ 491 (1131)
+.||..+. +..+.+|++.++..-.. ..+. ++.+.....+|+|||+. ++++...++...||. . .+....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccceE
Confidence 99987653 22345577765321111 1222 23344567899999995 233444566555664 3 234455
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+. ..+...
T Consensus 321 ~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~-~~g~~~ 396 (428)
T PRK01029 321 LLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAG-NSNESE 396 (428)
T ss_pred EeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEEC-CCCCce
Confidence 5555555666777754 56777765443 46899999877654433 22345678899999999887653 234678
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
|+++|+.+++....... .+.+...+|+|..
T Consensus 397 L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRKIVIG--SGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEEeecC--CCcccCceecCCC
Confidence 99999988776554432 2245567777643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-10 Score=112.56 Aligned_cols=163 Identities=20% Similarity=0.375 Sum_probs=115.6
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 413 SRVAWSPDGNFIGVAFT----------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
..+.|+|+|++|+.-.. -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35889999998776433 1346666664433222222222 345799999999999655566667889999
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEec---CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
||.+++.+..+. ...+..+.|+| +|+++++++. .|.|.+||.++.+.+..... ..++.+.|+|||++++++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEE
Confidence 998788888774 46778899865 5688888864 46799999997666655443 347899999999999998
Q ss_pred eec--CCCCceEEEEeCCCCeeeEEE
Q 001178 560 GTS--KEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 560 ~~~--~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
... ...+..++||+.. |+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEec
Confidence 753 2346788999975 6655443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-10 Score=128.00 Aligned_cols=209 Identities=17% Similarity=0.121 Sum_probs=137.9
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--c
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTK---HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--L 479 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~ 479 (1131)
+..+...+.+.+|||||++||.+..+ ..|.+||+.+++.. .+..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566678999999999999987654 47999999887532 23445566778999999985 344555444 5
Q ss_pred EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 480 IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 480 i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|++||..+.....+..+........|++ +++.|+..+. ++ .|.++++.++.. ..+......+....|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEE
Confidence 8888855555566665655555666754 6677765544 33 577778776543 3334445567788999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC---cEEEEEcCCCeEEEEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---QIKFWDMDNVNMLTST 626 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 626 (1131)
+.+.... +...|.+||+.++.... +... . ......|+|++++|+..+.++ .+++.+.. +.....+
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~-~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERV-LTDT-G-LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEE-ccCC-C-CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 9887521 24589999998765432 2221 1 234467999999888876654 35555543 3333433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-10 Score=128.99 Aligned_cols=213 Identities=17% Similarity=0.131 Sum_probs=137.3
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+...+.+.+|||||++++.+...+ ..|++||+.+++... +..+.+.+.+++|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~ 241 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAF 241 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEE
Confidence 333445777899999999999754443322 479999998875432 2234456778999
Q ss_pred cCCCCEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEE-EcCCC--cEEEEeCCCceeE
Q 001178 418 SPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT-CGDDK--LIRVWDLSGRKLF 491 (1131)
Q Consensus 418 spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s-~s~d~--~i~iwd~~~~~~~ 491 (1131)
+|||+.|+.. +.++ .|.+||+.++... .+..+.......+|+|||+. |+. ...++ .|.++|..+....
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCEE
Confidence 9999987754 4343 5888898876532 24445555667899999994 443 33333 5777785554455
Q ss_pred EecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+..+...+....|+ +++++++.++.++ .|.+||+.++.... +.. ........|+|||++|+..... ++...
T Consensus 316 ~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~-~~~~~ 390 (417)
T TIGR02800 316 RLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTR-GGRGV 390 (417)
T ss_pred EeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeC-CCcEE
Confidence 555555566677775 4567888777765 78888987754332 222 2224556899999999888752 23445
Q ss_pred EEEEeCCCCeeeEEEe
Q 001178 569 LVEWNESEGALKRTYI 584 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~ 584 (1131)
+++.+.. +.....+.
T Consensus 391 l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 391 LGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEECC-CceeeECC
Confidence 6666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-09 Score=110.80 Aligned_cols=233 Identities=13% Similarity=0.139 Sum_probs=152.6
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC-CCCCeeEEEEeCC-CCcEEEE-----EeCCCcEEEEEeecceeE
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQ-DNNIIAI-----GMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~-~~~~la~-----g~~dg~I~iwd~~~~~~~ 910 (1131)
-+.|+-|.+++|-.....+.|+++...-....+.. ....|+...|+|. ++..||. +..++++++|.+..++.+
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 57888899888877778899999732222212221 1356888899993 3344553 456788999999876655
Q ss_pred EeecccccCeeEEEEccCCCEEEEEe-----------CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSG-----------SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~-----------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.+-.-..-.=..+.|.+.|++|+.-- ....++++++...... ... ...++|...+|.|.+..
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~----V~~---~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP----VEK---DLKDPVHDFTWEPLSSR 288 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc----eec---cccccceeeeecccCCc
Confidence 44322223335688888888766421 1346788887742211 111 22378999999999998
Q ss_pred EEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceee-EecCCcc
Q 001178 980 LLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC-RIAPSAY 1052 (1131)
Q Consensus 980 l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~-~~~~~~~ 1052 (1131)
+++.+ +-.+.++|++.. ... ..+ ...-..+.|||.+++++.++-| |.|-+||........ ++.+..
T Consensus 289 F~vi~g~~pa~~s~~~lr~N-l~~-~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n- 361 (561)
T COG5354 289 FAVISGYMPASVSVFDLRGN-LRF-YFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN- 361 (561)
T ss_pred eeEEecccccceeecccccc-eEE-ecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC-
Confidence 88743 677889999866 222 222 3455677899999999998844 789999987655444 554322
Q ss_pred ccCCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCCCcc
Q 001178 1053 MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSETER 1098 (1131)
Q Consensus 1053 ~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~~~~ 1098 (1131)
...+.|+| |+.++.+... |..+.||++...+.
T Consensus 362 -------------~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 362 -------------TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred -------------ceEeeccC-CceEEEecCCCcccccCcceEEEEecCchh
Confidence 22377999 5555555543 78899999976543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.2e-10 Score=127.59 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=139.9
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
.......+...+...+|||||++++++...+ ..|.+||+.+++... +....+.+...+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeE
Confidence 3344456778899999999999755555333 369999998876532 112233455789
Q ss_pred EcCCCCEEEEE-eCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeE
Q 001178 417 WSPDGNFIGVA-FTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLF 491 (1131)
Q Consensus 417 ~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~ 491 (1131)
|||||+.|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|+++|..+....
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCEE
Confidence 99999988754 4444 6888899887532 24455666778899999995 333443443 5777774333333
Q ss_pred EecCCccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 492 QFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 492 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
.+...........|+ ++++.|+..+. ++ .|.+||+.++....... ........|+|||+.++..+. ..+...
T Consensus 325 ~lt~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~-~~g~~~ 399 (430)
T PRK00178 325 RVTFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATR-QQGRGV 399 (430)
T ss_pred EeecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEe-cCCceE
Confidence 333222223344564 45567766654 33 57888988765433222 122235689999999988764 233567
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
|++++.. +...+.+.. ..+.+...+|+|
T Consensus 400 l~~~~~~-g~~~~~l~~-~~g~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSIN-GRVRLPLPT-AQGEVREPSWSP 427 (430)
T ss_pred EEEEECC-CCceEECcC-CCCCcCCCccCC
Confidence 8888875 433334433 222455566665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-08 Score=101.84 Aligned_cols=257 Identities=12% Similarity=0.207 Sum_probs=175.1
Q ss_pred CCCCeeEEEecCCCCEEEEEe----CCeEEEEECCC--ceeE--EEEeCCCCCeeEEEEeCCCCcEEEEEeC-CCcEEEE
Q 001178 832 AEDVVPCVALSKNDSYVMSAG----GGKVSLFNMMN--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQIY 902 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~I~iw 902 (1131)
....++-|+|+|+++.|.++. .|.|.-|.++. |++. ........+...+++++ ++++++++.. .|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999999998875 36688877764 4432 22333344558899999 8888887764 4789999
Q ss_pred Eeec-ceeE--EeecccccC----------eeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 903 NVRV-DEVK--TKLKGHQKH----------ITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 903 d~~~-~~~~--~~~~~h~~~----------V~~l~~s~dg~~l~s~~--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
-+.. |.+. .....|.+. +-...|.|++++|++.+ .| .|.+|+++.+............+ ..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC---CC
Confidence 8865 4322 123345555 88899999999999875 45 59999999776555444444333 67
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEeCCCc-ccceeeecC------CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEE
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYDGSKM-ECIRQWVPQ------DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFD 1037 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~-~~~~~~~~~------~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd 1037 (1131)
.+.|+|+|++++..+.. +++|.+|..... ..+..+... ........+|.+++||++|.++.. ...|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988754 899999998863 222222221 112556788999999999999873 35788887
Q ss_pred CCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-CcEEEEecCCCccccccc
Q 001178 1038 ADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-GSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1038 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-g~v~iW~~~~~~~~w~~~ 1103 (1131)
+... ..+..+... ......|-...+.| ++++|++++.| .+|.+|.+....|+....
T Consensus 273 V~~~~g~L~~~~~~---------~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 273 VDPDGGKLELVGIT---------PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EcCCCCEEEEEEEe---------ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 7532 222222211 12234455678888 55677777764 479999999888765444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-09 Score=112.61 Aligned_cols=237 Identities=12% Similarity=0.157 Sum_probs=154.9
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecceeEEe
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDEVKTK 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~~~~~ 912 (1131)
-..||.|++++|.-..++|.||+..+..++..-......|....|+| .+.+||.-+.. ..+.+..+.+++.+.+
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeee
Confidence 36799999999998889999999988665544333456799999999 88888865533 3577777787777766
Q ss_pred ecccccCeeEEEEccCCCEEEEEeC-------C---CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGS-------D---AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~-------D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
-.-|.-.=..|-|-.+|.+|+.--. - ..+.|+.+..... ....+ .....+...+|-|.|..+++
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~v-----elke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVV-----ELKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceee-----ecchheeeeeeccCCCeEEE
Confidence 6555544455777788888875321 1 1244444443221 11111 11257888899999998887
Q ss_pred Ee----CCeEEEEeCCC-cccceeeecCCCCCCCeEEEEEccCCCEEEEEe---cCCcEEEEECCCCceeeEecCCcccc
Q 001178 983 NH----ETQLAIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATF---TDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 983 ~~----d~~i~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
-+ ...+.+|.+.+ ........... ....+.+.|||.|++++++. ..|.+..+|..-...... .
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~-~------ 533 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT-A------ 533 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc-c------
Confidence 32 45688998873 32222222211 34678899999999998877 468899999874221111 1
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEEEec------CCcEEEEecCCC
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAVGLT------DGSVKVIEPSET 1096 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~------Dg~v~iW~~~~~ 1096 (1131)
++.|.. ...+.|.| .|.|+++++. |.-.++|++...
T Consensus 534 --~~eh~~---at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 534 --SPEHFA---ATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred --Cccccc---cccceECC-CCCEEEEeeehhhhccccceEEEEeecH
Confidence 111111 12488999 5789998886 556788887644
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.8e-10 Score=127.83 Aligned_cols=224 Identities=14% Similarity=0.081 Sum_probs=135.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
...+...+.+..|||||++++.+...++ .|.+||+.+++... +....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECCC
Confidence 3456778899999999997555544333 58899998876432 1111223346899999
Q ss_pred CCEEEEE-eCCCe--EEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecC
Q 001178 421 GNFIGVA-FTKHL--IHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEG 495 (1131)
Q Consensus 421 g~~las~-~~d~~--i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~ 495 (1131)
|+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|..+.....+..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEEEec
Confidence 9988754 55564 777788776532 34455556788999999995 334444444 45666744333444432
Q ss_pred CccCeEEEeecccCCccEEEEEec-CC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAV-DG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
........+|+ ++|+.|+..+. ++ .|.++|++++.... +... .......|+|||+.|+.... .++...++++
T Consensus 348 ~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~ 422 (448)
T PRK04792 348 EGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTT-YQGKQVLAAV 422 (448)
T ss_pred CCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEe-cCCceEEEEE
Confidence 22223345664 45566665544 44 45556776655432 2211 12234579999999988764 3345568888
Q ss_pred eCCCCeeeEEEecccCCceEEEEEeC
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
+. +|...+.+.... +.+...+|+|
T Consensus 423 ~~-~G~~~~~l~~~~-g~~~~p~Wsp 446 (448)
T PRK04792 423 SI-DGRFKARLPAGQ-GEVKSPAWSP 446 (448)
T ss_pred EC-CCCceEECcCCC-CCcCCCccCC
Confidence 86 466655555432 2456667776
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-09 Score=120.12 Aligned_cols=241 Identities=12% Similarity=0.062 Sum_probs=146.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE---EEeCC--CeEEEEEecCCCcc
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG---VAFTK--HLIHLYTYQGSNDL 444 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~ 444 (1131)
..|.+.|.+.+.... +......+.+-+|||||+.++ +...+ ..|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367777776654432 233445567789999998533 33333 35888888887643
Q ss_pred ceeeeeecCcCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-CCC--ceeEEec-CCccCeEEEeecccCCccEEEE
Q 001178 445 CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LSG--RKLFQFE-GHEAPVYSVCPHQKENIHFIFS 516 (1131)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~----d~~i~iwd-~~~--~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s 516 (1131)
+ +....+.....+|||||+. ++++... |..+.+|+ ..+ .....+. ++.......+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKL-LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCE-EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 3334445567899999995 3333322 33445577 332 2223333 222334556774 56676665
Q ss_pred Ee-cCCeEEEEe--CCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceE
Q 001178 517 TA-VDGKIKAWL--YDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAG 592 (1131)
Q Consensus 517 ~s-~dg~i~~wd--~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 592 (1131)
.+ .+|...+|. ++. +.....+......+....|+|||+.|+..+. .++...|++||+.+++....... ...+.
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~-~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~ 374 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV-IKGVRQICVYDLATGRDYQLTTS--PENKE 374 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc-CCCCcEEEEEECCCCCeEEccCC--CCCcc
Confidence 54 567555554 432 2223334444456678899999999998764 23456899999998876544332 22456
Q ss_pred EEEEeCCCCEEEEEEc---CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 593 VVQFDTTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 593 ~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
...|+|||+.|+.... ...|+++|+.+++........+ .+...+|+|-
T Consensus 375 ~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 375 SPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 7889999998876443 3568899998877654443222 4567788774
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-08 Score=108.12 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=161.6
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEec
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT----------KHLIHLYTYQ 439 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~----------d~~i~vwd~~ 439 (1131)
++|.+.|..+++.+... -.|.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i------------------~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMT------------------DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEE------------------EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 89999999998876521 1122111 24 9999998877755 6899999999
Q ss_pred CCCccceeeeeec--C---cCCeeEEEEecCCCceEEEEE--cCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCc
Q 001178 440 GSNDLCQSLEIDA--H---VGGVNDLAFSYPNKQLCIVTC--GDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 440 ~~~~~~~~~~~~~--h---~~~V~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~ 511 (1131)
+.+.+..+. +.. + ...-..++++|||+. ++.. +.+..|-+.| .+++.+.++.--. ...-+. ..+.
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~---t~e~ 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP---TAND 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE---ecCC
Confidence 987654321 111 1 223457899999995 4443 4489999999 7888877776322 111111 1111
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEE-----ecCCCceE-EEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCC-----ee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVD-----YDAPGLWC-TTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEG-----AL 579 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v-~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~-----~~ 579 (1131)
. ..+-+.||......++....... +.....++ ..-.|.+ +|+++.... .|.|++.|+... +.
T Consensus 159 ~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 T-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred c-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecce
Confidence 1 22334566655544443332211 11100000 0013455 787776664 589999995432 22
Q ss_pred eEEEe------cccCCceEEEEEeCCCCEEEEEE----------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 580 KRTYI------GFRKKSAGVVQFDTTRNRILAAG----------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 580 ~~~~~------~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
...+. +-....+..+++++++++++++. ..+.|.++|..+++.+..+.... .+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCC
Confidence 22221 11122344599999999888843 22579999999999999887643 5789999999
Q ss_pred CC-EEEEEE-CCCcEEEEecCCC
Q 001178 644 GN-LLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 644 ~~-~l~~~~-~dg~i~iw~~~~~ 664 (1131)
++ +|++.. .++.|.++|..++
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC
Confidence 99 887766 5788999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=109.26 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=122.9
Q ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc---------HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhH
Q 001178 3 SLSRELVFLILQFLDEEKFKESVHRLEQESGFFFN---------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIF 73 (1131)
Q Consensus 3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1131)
...+|+.|||+.||-..||.++|..+.+|+|+... -...|.+|..|+-++|+..++++..---+. ...+.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~-n~~l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDT-NRELF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHcc-chhHH
Confidence 45789999999999999999999999999999761 567899999999999999999983221112 22389
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccCCC--ChhHHHHHHHHHHhhc
Q 001178 74 FEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TRSARTIMLVELKKLI 151 (1131)
Q Consensus 74 ~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~~ 151 (1131)
|.+.+|+++||+..+...+|+.|+|.+|.|+...+++.++.|...|..--++. ........ ....|.++...+...|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~-~~~sp~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFEL-SQESPSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCC-cccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777777777665432221 01000000 2355777777777655
Q ss_pred ccCcCccccccCCCCChHHHHHHHHHHHHHH
Q 001178 152 EANPLFRDKLVFPSLKTSRLRTLINQSLNWQ 182 (1131)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1131)
-...- . -...+|..|+..-...|
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHH
Confidence 43211 0 12457777774444444
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-09 Score=115.75 Aligned_cols=192 Identities=12% Similarity=0.167 Sum_probs=150.1
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEe------c------------CCCceEEEEEcCCCcE
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS------Y------------PNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s------~------------d~~~~~l~s~s~d~~i 480 (1131)
|-+.++|....||.+++||...++....+.....-.+..++..|. | .+...+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456799999999999999999876433222222233445555552 1 1222378888899999
Q ss_pred EEEe-CCCceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEE
Q 001178 481 RVWD-LSGRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
.+++ ..|+.-.++. .|.++|.++.++ .+-..|++++.|+.+..|+.........+......+.+++++|||..++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999 7777777776 699999999874 4447899999999999999999888888888888899999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-----CCEEEEE-EcCCcEEEEEcCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-----RNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
+++ ++|.+||+++++.+..|.+|.. +|+++.|..+ |.+++++ ..+..+.+|-...
T Consensus 161 ~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 984 5899999999999999999766 9999999877 6666663 4456677776544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-09 Score=112.05 Aligned_cols=189 Identities=14% Similarity=0.274 Sum_probs=149.0
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC---CCCeeEEEE------eC-------------CCCcEEEEEeCCCc
Q 001178 842 SKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP---PPASTFLAF------HP-------------QDNNIIAIGMEDST 898 (1131)
Q Consensus 842 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~~~~~la~g~~dg~ 898 (1131)
.|.+.++|... ||.+++|+..+++....+... .+..++..| +| .|...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567788877 899999999999888877532 233344433 22 14567888999999
Q ss_pred EEEEEeecceeEEeec--ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 899 IQIYNVRVDEVKTKLK--GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
|.+|+...++....+. .|.+.|+++.++.+-.+|.|++.|+.+..|+.......... .. ....+.+++.+||
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-----~~-~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-----KE-QKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-----cc-CCCccceEEEcCC
Confidence 9999999999887775 69999999999999999999999999999999885432221 11 1257889999999
Q ss_pred CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccC-----CCEEEEEe-cCCcEEEEECCC
Q 001178 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCN-----SQLIYATF-TDGSIGVFDADS 1040 (1131)
Q Consensus 977 ~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~d-----g~~l~s~~-~dg~i~vwd~~~ 1040 (1131)
|..|+++ .+.|.+||+.+++.+..|.+| .++|.+++|..+ |.+++++. .+..+.+|-++.
T Consensus 156 ~~~l~~a-s~~ik~~~~~~kevv~~ftgh---~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTA-SRQIKVLDIETKEVVITFTGH---GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEec-cceEEEEEccCceEEEEecCC---CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9888765 468999999999999999888 899999999887 67666554 567788887764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=108.33 Aligned_cols=201 Identities=16% Similarity=0.253 Sum_probs=132.7
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCc--cCeEEEeecccCCccEEEEEecCCeEE
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHE--APVYSVCPHQKENIHFIFSTAVDGKIK 524 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1131)
.+.||...|++...-|... -+++.+.|.++|||- ..++.-..+. |. .+++++.+ ..+...|+.|-..|++.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y--~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEY--VSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhh-hhCCCCceEeee--eccceEEEEEEecceEE
Confidence 4789999999988888777 589999999999998 3343333322 33 45666665 44557899999999998
Q ss_pred EEeCCC----CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC
Q 001178 525 AWLYDN----VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600 (1131)
Q Consensus 525 ~wd~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 600 (1131)
-+.+.. .........|...+..+.|+-...++++++. |..+.---.+.+..+..+.-.. ...+..+.-
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeec--cCCCCceee--
Confidence 886543 3334455667888999999999999999875 4444322233343332222111 011111111
Q ss_pred CEEEEEEcCCcEEEEEcCC--CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 601 NRILAAGEDNQIKFWDMDN--VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+.+.|...|.|..-.+.. -.++..+. ++...+.+++|.|..+.+++|..|..+.+||+...
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 1445555666666655443 33444444 44558999999999999999999999999998554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-08 Score=111.28 Aligned_cols=305 Identities=11% Similarity=0.041 Sum_probs=182.1
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1131)
..++.++.+|.+..+|..+++................. ++..+++++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 57888888999999999988888766555432222222 4666766654 7899999999999887655321 22
Q ss_pred EE-EEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC---cceEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 592 GV-VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 592 ~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
.+ ... .+..++.++.+|.|+.||..+|+.+........... ....... +..++.+..++.+..+|..++...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 245788888899999999999998877654332100 0111222 346778888899999998877322
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
.. .... .|. + .. ...++.+.
T Consensus 214 W~-~~~~----------------------~~~-----------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WE-QRVA----------------------LPK-----------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred ee-eccc----------------------cCC-----------------------------C------CC-chhhhhcc-
Confidence 11 0000 000 0 00 00000000
Q ss_pred cccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccC
Q 001178 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTND 827 (1131)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 827 (1131)
.. ...+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 ------------------~~----~p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------ 270 (377)
T TIGR03300 234 ------------------DG----DPVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------ 270 (377)
T ss_pred ------------------CC----ccEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC------
Confidence 00 0011 14456777778888777764321 23433210
Q ss_pred CCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 828 VPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 828 ~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
. ....+ .++..+.+++ +|.|..+|..+++.+...... ......... .+..|++++.+|.|+++|..
T Consensus 271 ---~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 ---S----YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ---C----ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 0 11122 2345555555 899999999999887665321 222233333 23477789999999999999
Q ss_pred cceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEE
Q 001178 906 VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944 (1131)
Q Consensus 906 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lw 944 (1131)
+++.+..++.+...+..--...+ +.|+.++.||.|+.+
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 99999888876654433222223 458889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=9e-10 Score=131.94 Aligned_cols=200 Identities=18% Similarity=0.294 Sum_probs=157.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
++-..|.++.=+|-.. +.+||+.||.|++|.+..+..+. .|+. .|. ..|+.+.|+.+|..+
T Consensus 2206 ~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~-----~~rt------------~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVV-----CFRT------------AGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEE-----Eeec------------cCc-chhhhhhhcccCCce
Confidence 4667899999999887 48899999999999999887764 2322 133 789999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc---CCCcEEEEe--CCCceeEEecCCccC
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD--LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iwd--~~~~~~~~~~~h~~~ 499 (1131)
..+..||.+.+|.+.. +.....+.|.....++.|-. . .+++++ .++.+.+|| ..+..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999873 34446788999999999986 3 466654 578999999 444433333789999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
++++++.|.. +.|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.+.||++.....
T Consensus 2339 aT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccch
Confidence 9999997655 7999999999999999987776655443 33 4567777776 89999999998877
Q ss_pred eEEEeccc
Q 001178 580 KRTYIGFR 587 (1131)
Q Consensus 580 ~~~~~~~~ 587 (1131)
+..+...+
T Consensus 2403 l~~~p~e~ 2410 (2439)
T KOG1064|consen 2403 LHTFPSEH 2410 (2439)
T ss_pred hhcCchhh
Confidence 77766443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-08 Score=97.48 Aligned_cols=211 Identities=18% Similarity=0.124 Sum_probs=144.4
Q ss_pred CCcccccCCCcccceeeecc--CCCcEEEEEEec---CCCcEEEEEcCCCeEEEEECCCCccccc-ccceeecccccccc
Q 001178 326 SQQATWSLDDLPRAVACTMH--QGSSVVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVS-KPFKIWDMSNCSMM 399 (1131)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 399 (1131)
|++..++..+..-....++. .++.+..+.|+- +|...++-+-.+|.|.++.....+.... .++..
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------- 116 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------- 116 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch---------
Confidence 34555555554322222332 456677777763 4443566666788999987654332210 00000
Q ss_pred eeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 400 ~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.+-....-.++.|++-|..++++..+|.+.+-+..... +.....+++|..+.+-..|+..... ++.+||+|+.
T Consensus 117 -----~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~ 189 (339)
T KOG0280|consen 117 -----KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGS 189 (339)
T ss_pred -----hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCce
Confidence 00001134578899999999999999998855544322 3444468899999999999987766 8999999999
Q ss_pred EEEEe--CCCceeEE-ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC
Q 001178 480 IRVWD--LSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 480 i~iwd--~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
+..|| ..++.+.. .+.|...|.++.-++ +.+.+|++|+.|..|++||.++......-....+.|..+..+|.-
T Consensus 190 l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred EEEEEecCCcceeeecceeeecceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 99999 35666655 567999999998665 456899999999999999999766665444555779999999854
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=0.00016 Score=83.88 Aligned_cols=629 Identities=13% Similarity=0.106 Sum_probs=312.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECC-CCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVG-LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.-+..-..+++|.+ ...|..+|.+...-+. +++......+++ -+-|...-..|+.+-++| .|
T Consensus 256 ~~t~~~~~~v~~~~~~-yLl~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~l 320 (1096)
T KOG1897|consen 256 QSTIVCYGRVDLQGSR-YLLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VL 320 (1096)
T ss_pred CceEEEcccccCCccE-EEEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eE
Confidence 3334444466778875 6668888987766665 555443211111 123555666777777777 55
Q ss_pred EEEeCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCC---CceEEEEEc---CCCcEEEEe--C--CCcee
Q 001178 425 GVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPN---KQLCIVTCG---DDKLIRVWD--L--SGRKL 490 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~---~~~~l~s~s---~d~~i~iwd--~--~~~~~ 490 (1131)
.+|+.-|.=.+-.+.+.... ....++ ..-++|.+++.-... +. -++||+ .||++||.. + +.-..
T Consensus 321 FvGS~~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~ 398 (1096)
T KOG1897|consen 321 FVGSRFGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELAS 398 (1096)
T ss_pred EEeccCCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeE
Confidence 56766655455555432211 000111 234588888776543 22 466654 689999987 2 22223
Q ss_pred EEecCCccCeEEEe--ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEc-cCCCEEEEEeecCCCCc
Q 001178 491 FQFEGHEAPVYSVC--PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYS-ADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~--~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~ 567 (1131)
..+.| -..++.+. +.+..+. +++.+-.+.+ ++..+...-......+-......+..+ -.|+.|+-.. ..
T Consensus 399 i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~eT-rvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~ 470 (1096)
T KOG1897|consen 399 IDLPG-IKGMWSLKSMVDENYDN-YLVLSFISET-RVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SN 470 (1096)
T ss_pred eecCC-ccceeEeeccccccCCc-EEEEEeccce-EEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cc
Confidence 34455 34566666 5554554 4443332222 223332211111111111112222222 1333333332 34
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC--C-
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE--G- 644 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~--~- 644 (1131)
.|++++.. + ......... .++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- +
T Consensus 471 ~iRl~ss~-~-~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 471 SIRLVSSA-G-LRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cEEEEcch-h-hhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCC
Confidence 57777644 1 222233212 34444444455577777777888777777665 333333333347899999874 2
Q ss_pred ---CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 645 ---NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 645 ---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
+++++|..+..+.+.-......... ...-..+.-+..++..
T Consensus 546 ~~s~~~aVG~Ws~~~~~l~~~pd~~~~~-----------------------------------~~~l~~~~iPRSIl~~- 589 (1096)
T KOG1897|consen 546 NKSRLLAVGLWSDISMILTFLPDLILIT-----------------------------------HEQLSGEIIPRSILLT- 589 (1096)
T ss_pred CcceEEEEEeecceEEEEEECCCcceee-----------------------------------eeccCCCccchheeeE-
Confidence 3788887766555543322211111 0000011111111100
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
....+..++.++..||.+..+.+.......... ....-...++.=-.|+..+..-+.+.+|.-..+|.
T Consensus 590 --~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~----Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~------ 657 (1096)
T KOG1897|consen 590 --TFEGDIHYLLVALGDGALLYFVLDINTGQLSDR----KKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYS------ 657 (1096)
T ss_pred --EeeccceEEEEEcCCceEEEEEEEcccceEccc----cccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEe------
Confidence 111225678888888888777665422110000 00011223333444554444444444443333332
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeE-EEecC--CCCEEEEEeCCeEEEEECCCcee--EEEEeCCCCC
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPC-VALSK--NDSYVMSAGGGKVSLFNMMNFKV--MTTFMSPPPA 876 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~-l~~s~--dg~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~ 876 (1131)
.+++++...+. -..+.. ..|+. -+..++.+..+.+++.-++.-+. ++++.. ...
T Consensus 658 -----------------~n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~ 716 (1096)
T KOG1897|consen 658 -----------------SNGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GES 716 (1096)
T ss_pred -----------------cCCcEEEeccc---hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCC
Confidence 12222221110 011111 11222 23467777777777776654322 333322 334
Q ss_pred eeEEEEeCCCCcEEEEEeCC--------------CcEEEEEeecceeEEeec--c--cccCeeEEEEccC-CCEEEEEeC
Q 001178 877 STFLAFHPQDNNIIAIGMED--------------STIQIYNVRVDEVKTKLK--G--HQKHITGLAFSTN-LNILVSSGS 937 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~d--------------g~I~iwd~~~~~~~~~~~--~--h~~~V~~l~~s~d-g~~l~s~~~ 937 (1131)
...+++.+ ...++++.+.. ..++++|-.+-+.+...+ . -.-.|.++.|..| +.++++|..
T Consensus 717 prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 717 PRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred hhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEE
Confidence 56667765 44444443321 125666655554433221 1 1124556668888 677777753
Q ss_pred ----------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 938 ----------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 938 ----------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
.|.|.++............-.. ......+..--...++++-...|++|++.+.+..+.-..
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~------v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~--- 866 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEELNSLELVAETV------VKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIECN--- 866 (1096)
T ss_pred eeccCCCCcccceEEEEEEecCCceeeeeeee------eccceeehhhhCCeEEEecCcEEEEEEccccceehhhhc---
Confidence 4778888877632222111111 112223333344556677788999999998855444333
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECC--CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDAD--SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD 1085 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D 1085 (1131)
+..++..+...-.|..+++|+.=+++.+-.+. .|.....-+... . .+-.++.+. ++..++-+..+
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~---------p--~Wmtaveil--~~d~ylgae~~ 933 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN---------P--NWMTAVEIL--DDDTYLGAENS 933 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC---------c--cceeeEEEe--cCceEEeeccc
Confidence 37789999999999999999987877765544 333433322211 1 122233332 34567778889
Q ss_pred CcEEEEecCCC
Q 001178 1086 GSVKVIEPSET 1096 (1131)
Q Consensus 1086 g~v~iW~~~~~ 1096 (1131)
|.+++-+..+.
T Consensus 934 gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 934 GNLFTVRKDSD 944 (1096)
T ss_pred ccEEEEEecCC
Confidence 99888877533
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=114.02 Aligned_cols=241 Identities=14% Similarity=0.236 Sum_probs=169.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-cc---ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DL---CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL 479 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~---~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~ 479 (1131)
.+.||+..|..++--.+.+.+++++.|++|++|.++... .. ....++..|+.+|.++-|..|-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 477999999999888888899999999999999997522 22 24457889999999999999988 56666 889
Q ss_pred EEEEe-CCCceeEEec-----CCccCeEEEeecccCCccEEEEE-ecCCeEEEEeCCCCceeEEec-----CCCceEEEE
Q 001178 480 IRVWD-LSGRKLFQFE-----GHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVGSRVDYD-----APGLWCTTM 547 (1131)
Q Consensus 480 i~iwd-~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~~ 547 (1131)
|.+|| .-|+.+.... +..+.|.++ ++-+..++++| +...+|+++|.+..+-...+. +...-+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 7787765332 222334444 33344566655 788999999998876555433 334468899
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE-EEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF-WDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 626 (1131)
++.+.|+.++.+-. +|.|.+.|.++|+.+.......- ....++ .|..+.++....|.++.+ |..-.+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998876 89999999999998776553222 111121 344566777777888888 988777655544
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.... +... ...-|..+++......+.+|.-
T Consensus 957 kpppe--pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chhh--hhccCceeEEeccCcEEEEEec
Confidence 43221 1110 1123666777777777888753
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=115.66 Aligned_cols=282 Identities=13% Similarity=0.265 Sum_probs=187.0
Q ss_pred ccCccccccCCCCC-cccccCCC-------cccceeeeccCCC--cEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcc
Q 001178 314 SQSVDEATYPVPSQ-QATWSLDD-------LPRAVACTMHQGS--SVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRER 382 (1131)
Q Consensus 314 ~~~~~~~~~s~~~~-~~~~~~~~-------~~~~~~~~~~h~~--~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~ 382 (1131)
.+.+.++.++|.|+ ++..+... .|....+.+.|-. .|-.+.|||... .+-++......-.||++....-
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 44677788888886 33333322 2556666676654 677889988543 1234444556677888764332
Q ss_pred cccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEE
Q 001178 383 LVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461 (1131)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~ 461 (1131)
.. ..-++.||+..|+.+-|.|. ...||+++.|-.+..||+.+... .+..+..-......++
T Consensus 104 ~a----------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 104 NA----------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVK 165 (1081)
T ss_pred cc----------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceee
Confidence 11 12257899999999999995 45899999999999999988542 3334444445677899
Q ss_pred EecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-c
Q 001178 462 FSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-D 538 (1131)
Q Consensus 462 ~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~ 538 (1131)
|+.... .+...+..+.|++|| ..+.++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .
T Consensus 166 wnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceec
Confidence 988666 466677778999999 55677889999999999998864333 46889999999999999876554432 2
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEE---------EeCCC-CeeeEEEecccCCceEEEEE--------eCCC
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE---------WNESE-GALKRTYIGFRKKSAGVVQF--------DTTR 600 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~v~~~~~--------s~~~ 600 (1131)
....+|..-.+.|-|.-..+.-. .++..+.+ |+..+ .+.+..|.||.+ .|.-.-| .-+.
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~ 319 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDS 319 (1081)
T ss_pred cccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCc
Confidence 23345666667775543332211 11223333 33332 357888999876 3322222 1122
Q ss_pred --CEEEEEEcCCcEEEEEcCC
Q 001178 601 --NRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 601 --~~l~~~~~dg~i~iwd~~~ 619 (1131)
-.|++-+.|.++++|-+.+
T Consensus 320 rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 320 RDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cceeEEEeecCCceEeeeccH
Confidence 2689999999999998754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-07 Score=114.02 Aligned_cols=258 Identities=11% Similarity=0.096 Sum_probs=160.3
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC--C------------CCCeeEEEEeCCCCcEEEE-EeCCCcE
Q 001178 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAI-GMEDSTI 899 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~-g~~dg~I 899 (1131)
..+++++++..+.++. .+.|++||..+. .+..+.. . -.....+++.+ ++..|++ -..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 4688988655444444 688999998654 3433322 1 12367899998 5554444 4456789
Q ss_pred EEEEeecceeEEeecc--c---------------ccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeee---e
Q 001178 900 QIYNVRVDEVKTKLKG--H---------------QKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAI---Q 958 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~--h---------------~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~---~ 958 (1131)
+++|..++.. .++.+ . -..-..++|+| ++..+++.+.++.|++||..++......-. .
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 22211 0 11235799999 566777778889999999987643211000 0
Q ss_pred cCCCC-----CCCCceEEEEcCCCcEEEEE--eCCeEEEEeCCCcccceeeec-------------CC-----CCCCCeE
Q 001178 959 LPAGK-----LPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECIRQWVP-------------QD-----VLSSPIS 1013 (1131)
Q Consensus 959 ~~~~~-----~~~~v~~v~~s~d~~~l~~~--~d~~i~vwd~~~~~~~~~~~~-------------~~-----~~~~~v~ 1013 (1131)
...+. .-.....++++|++..|+++ .++.|++||+.++.......+ .. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000 01345679999999866654 468999999987653211100 00 0011346
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCcc-ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY-MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1014 ~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
+++|+++|.++++-..++.|++||..++........... ...........-.+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 899999999888888899999999988776543321100 000001112223466788888 568999999999999999
Q ss_pred cCCCcc
Q 001178 1093 PSETER 1098 (1131)
Q Consensus 1093 ~~~~~~ 1098 (1131)
+.+.+.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 987653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-07 Score=93.20 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=168.2
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC---CCC-EEEEEeCCCeEEEEEecCCCcc
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP---DGN-FIGVAFTKHLIHLYTYQGSNDL 444 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 444 (1131)
.|.+.+|++...+...... +.......+..|.|.- +|. .|+-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4577888877665543111 1122345567777764 555 5677778899999987654332
Q ss_pred ceeeeeecCcC---CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce--eEEecCCccCeEEEeecccCCccEEEEEe
Q 001178 445 CQSLEIDAHVG---GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK--LFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 445 ~~~~~~~~h~~---~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
.....+..-.- ...++.|++-+. -++++-.+|.+.+-+ ..... +++++.|+.+.+...|+.... +.+++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC-ceEEecC
Confidence 21112222111 235778998888 588888889988666 33333 347889999999999875443 7999999
Q ss_pred cCCeEEEEeCCCCce-eEE-ecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEE
Q 001178 519 VDGKIKAWLYDNVGS-RVD-YDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVV 594 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~-~~~-~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 594 (1131)
+|+.+..||++..+. +.. ...|...|.++.-+| .+.++++|+. |-.|++||.+ .++++..-. -.+.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~--v~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAK--VGGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCc--cccceEEE
Confidence 999999999994442 222 344666788888775 5789999988 8899999998 466654333 34578888
Q ss_pred EEeCCCC-EEEEEEcCCcEEEEEcCCCeEE--EEEecc-CCCCCcceEEEcCCCCEEEEEE-CCCcEE-EEecCCC
Q 001178 595 QFDTTRN-RILAAGEDNQIKFWDMDNVNML--TSTEAE-GGLPSLPRLRFNKEGNLLVVTT-ADQGIK-ILANADG 664 (1131)
Q Consensus 595 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~i~~v~~sp~~~~l~~~~-~dg~i~-iw~~~~~ 664 (1131)
..+|.-. .++.++.-+-.+|-+...+... ..+..+ .+..-...-.|......+++++ .|+.++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888643 3344444444666666543222 111111 1211223333433335677754 466644 7765444
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=125.43 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=163.7
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
++.|-..|.++.=+|...+.++|+.||.|++|....+..+....+ .|. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT-AGN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-cCc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 445667888999999999999999999999999988877654433 233 8899999999999 688888999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEE---ecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEe
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.+.+.....+.|......+.|.. ..++++ +.++.+.+||.-..... .....|.+.++++++-|..+.|++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888889998888888754 345555 35789999996543322 23477888999999999999999999
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
. +|.|++||++..++++.++. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 7 99999999998888776653 33 567899999999999999998777666544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-07 Score=103.71 Aligned_cols=275 Identities=12% Similarity=0.063 Sum_probs=166.8
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
+..+++++.+|.+..+|..+++ .+|....+.. .. ...+. ++..+++++ ++.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~-------------~~W~~~~~~~--------~~---~~p~v--~~~~v~v~~~~g~l~ 118 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGK-------------RLWRVDLDER--------LS---GGVGA--DGGLVFVGTEKGEVI 118 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCc-------------EeeeecCCCC--------cc---cceEE--cCCEEEEEcCCCEEE
Confidence 6678888888888777654322 2343322111 01 11222 355566665 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe-----eEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~s~dg~~l 932 (1131)
.+|..+|+.+..............+ . ++ .++.++.+|.|+.||.++|+.+-........+ .+.... +..+
T Consensus 119 ald~~tG~~~W~~~~~~~~~~~p~v-~-~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v 193 (377)
T TIGR03300 119 ALDAEDGKELWRAKLSSEVLSPPLV-A-NG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGV 193 (377)
T ss_pred EEECCCCcEeeeeccCceeecCCEE-E-CC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEE
Confidence 9999999988776543221111222 1 33 56667889999999999998876655332211 111221 3467
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-C---Cc-eEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-V---GE-TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~---~v-~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
+.+..++.+..+|..+++...........+... . .+ ....+ .++..++.+.++.++.||..+|+.+......
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-- 270 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-- 270 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--
Confidence 788888999999999887544332221111100 0 00 11111 2444455567899999999999876554321
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCc
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~ 1087 (1131)
...... .++..+++++.||.++.+|..+|+.+.+........ ... ..+ .+..+++++.||.
T Consensus 271 ---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-----~ss----p~i-----~g~~l~~~~~~G~ 331 (377)
T TIGR03300 271 ---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-----LTA----PAV-----VGGYLVVGDFEGY 331 (377)
T ss_pred ---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc-----ccc----CEE-----ECCEEEEEeCCCE
Confidence 111222 356778888889999999999998776553211000 011 112 2458889999999
Q ss_pred EEEEecCCCccccccccCC
Q 001178 1088 VKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1088 v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|++||..+++..|....+.
T Consensus 332 l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 332 LHWLSREDGSFVARLKTDG 350 (377)
T ss_pred EEEEECCCCCEEEEEEcCC
Confidence 9999999999999877544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=104.61 Aligned_cols=106 Identities=13% Similarity=0.296 Sum_probs=80.6
Q ss_pred EEEEecCCCcEEEEEcC----CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 352 SMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
-..|+|... ++|+++- .|.|.||- ++|++-..-. ..- .+++++|+|..-.||.|
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~---hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPV---HATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cce---ehhhhccChHHHHHhhc
Confidence 347888776 6777643 47888884 5566443211 111 35679999999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
-.-|.+.+|...+.+. ......|..+|..+.||++|. .++|+..-|.+.+|.
T Consensus 78 we~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred cccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999877542 223456999999999999999 899999999999998
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4e-09 Score=111.40 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=164.2
Q ss_pred EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 867 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
+..+.+|...|..++--. +.+-+++++.|++|++|.++. ..+..++..|..+|.++.|-.|-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 455778888888887665 666788999999999999863 24667888999999999999998888875 78
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC--CcEEEEE--eCCeEEEEeCCCcccceeeecC--CCCCCCeE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVN--HETQLAIYDGSKMECIRQWVPQ--DVLSSPIS 1013 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~--~d~~i~vwd~~~~~~~~~~~~~--~~~~~~v~ 1013 (1131)
.|.+||.--++...... .....+.+..+..-+. ...+.++ ...+++++|.+.++....+..- ...+.-+.
T Consensus 805 giHlWDPFigr~Laq~~----dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQME----DAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhh----cCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 89999987765433222 1111233444444343 3344443 4789999999998877777543 22357789
Q ss_pred EEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEE-Ee
Q 001178 1014 SAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV-IE 1092 (1131)
Q Consensus 1014 ~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i-W~ 1092 (1131)
+++..+.|++|+++-..|+|.+.|.++|+.+...++-.... +.++ .| ..+.|+....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdl------------lqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDL------------LQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchh------------hhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999887665422111 1122 23 2357888888999999 99
Q ss_pred cCCCccccccccCCCCC
Q 001178 1093 PSETERKWGVAVPVDNG 1109 (1131)
Q Consensus 1093 ~~~~~~~w~~~~p~~~~ 1109 (1131)
...+-+.....+|.|+.
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 99998888888888764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-06 Score=87.14 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=141.1
Q ss_pred EEEecCCCCEEEEEeCCeEEEEECCCc--eeEEEEe---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 838 CVALSKNDSYVMSAGGGKVSLFNMMNF--KVMTTFM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
.++.+.||+.||+..|..|.|=..++. .++.+.. .....=+.++||| |+.+||.+...|+|++||+....+ ..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence 367889999999999999888766542 2222222 3344567899999 999999999999999999875443 33
Q ss_pred ecc-c------ccCeeEEEEccC------CCEEEEEeCCCcEEEEEcCCC--ceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 913 LKG-H------QKHITGLAFSTN------LNILVSSGSDAQLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 913 ~~~-h------~~~V~~l~~s~d------g~~l~s~~~Dg~v~lwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
+.. + ...|.+|.|.+- ...|++..-+|.++-|-+..+ +.-..........+.+..|..+.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 322 1 346777777543 124666777888877776432 2212222222334455789999999999
Q ss_pred cEEEEEe-----C-------CeEEEEeCCCccccee--------------------------eecCCCCCCCeEEEEEcc
Q 001178 978 VRLLVNH-----E-------TQLAIYDGSKMECIRQ--------------------------WVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 978 ~~l~~~~-----d-------~~i~vwd~~~~~~~~~--------------------------~~~~~~~~~~v~~i~~s~ 1019 (1131)
++|++|+ + ..+..|.+-++..... +.........|..|..||
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP 239 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP 239 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence 9888752 1 1356665433221111 000111256799999999
Q ss_pred CCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 1020 NSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1020 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
||+.||+...+|.|.+|++.+.++......
T Consensus 240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 999999999999999999999887776653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-06 Score=109.52 Aligned_cols=258 Identities=10% Similarity=0.110 Sum_probs=158.1
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-C
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-T 429 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~ 429 (1131)
..+++++++..++++-+.++.|++||............ ..... ..-..-..+-.....+++++++..|.++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-----g~~G~-~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-----GEEGL-RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-----CCcCC-CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986545777778889999999864322110000 00000 00000011223467899999988766654 4
Q ss_pred CCeEEEEEecCCCccceeee-------eecC-------cCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC
Q 001178 430 KHLIHLYTYQGSNDLCQSLE-------IDAH-------VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~-------~~~h-------~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 495 (1131)
.+.|+++|..++. +..... ..+. -..-..++|+|++.. ++++.+.++.|++||.....+..+.+
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEEEEec
Confidence 5689999987754 211100 0000 112368999995443 67888889999999944444433322
Q ss_pred C---------------ccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCceeEEecC-------------C------
Q 001178 496 H---------------EAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGSRVDYDA-------------P------ 540 (1131)
Q Consensus 496 h---------------~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~-------------~------ 540 (1131)
. -.....+++++ ++. ++++.+.++.|++||++++.......+ .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 1 12344577754 445 555667789999999987553221100 0
Q ss_pred --CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc------------cCCceEEEEEeCCCCEEEEE
Q 001178 541 --GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF------------RKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 541 --~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~ 606 (1131)
......++++++|+.+++-.. ++.|++||..++......... .-.....++++++|+.+++-
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 012468899999987666554 889999999877655332110 00135678999999988888
Q ss_pred EcCCcEEEEEcCCCeE
Q 001178 607 GEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 607 ~~dg~i~iwd~~~~~~ 622 (1131)
+.++.|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999998764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.9e-07 Score=99.94 Aligned_cols=197 Identities=12% Similarity=-0.012 Sum_probs=121.4
Q ss_pred CcEEEEEEecCCCcEEEEEcC---CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
..+..-.|||||+++++..+. +..|.++|+.+|+... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 378899999999864443322 3579999998887543 22244556678899999977
Q ss_pred EEEe-C--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEeCCCceeEEecCCccC
Q 001178 425 GVAF-T--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWDLSGRKLFQFEGHEAP 499 (1131)
Q Consensus 425 as~~-~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~h~~~ 499 (1131)
+... . +..|.++|+.+++. . .+..+........|+|||+.+++ +....+ .|.+.|..+.....+......
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F-~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVF-VSDRLGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEE-EECCCCCceEEEEECCCCCeEeCccCCCc
Confidence 7543 2 34688888877652 2 23334433455689999997433 333333 577777544444333322111
Q ss_pred eEEEeecccCCccEEEEEecC---------CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 500 VYSVCPHQKENIHFIFSTAVD---------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
...| +++|+.|+..+.. ..|.+.|++++.... +... .......|+|||+.++..... .+...+.
T Consensus 323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~-~~~~~L~ 395 (419)
T PRK04043 323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYL-GNQSALG 395 (419)
T ss_pred --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEcc-CCcEEEE
Confidence 2355 4566766655543 367777887765433 3222 223468899999999887643 3355677
Q ss_pred EEeCCC
Q 001178 571 EWNESE 576 (1131)
Q Consensus 571 iwd~~~ 576 (1131)
+.++..
T Consensus 396 ~~~l~g 401 (419)
T PRK04043 396 IIRLNY 401 (419)
T ss_pred EEecCC
Confidence 777754
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.2e-06 Score=85.33 Aligned_cols=227 Identities=13% Similarity=0.017 Sum_probs=145.1
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~ 440 (1131)
.||.|+..|...+|.+.+.+.... ....|...|+-+.=.-| .-.+..++.|.++++.+++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 589999999999999987665431 12223333322221112 22466788899999999987
Q ss_pred CCccceeeeeecCcC--CeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEE--ecCCccCeEEEeecccCCccEE
Q 001178 441 SNDLCQSLEIDAHVG--GVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ--FEGHEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~--~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l 514 (1131)
+.... .-|.. .+.++++++|++ ++++.++...|..|. .+++.+.. ....++.-.+..| +.....+
T Consensus 148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~--s~~~~~F 218 (344)
T KOG4532|consen 148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF--SENDLQF 218 (344)
T ss_pred Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee--ccCcceE
Confidence 65322 22433 388999999999 789999999999987 44444433 2223333445555 4455789
Q ss_pred EEEecCCeEEEEeCCCCceeE-----EecCCCceEEEEEEccCCCE-EEEEeecCCCCceEEEEeCCCCeeeEEEecccC
Q 001178 515 FSTAVDGKIKAWLYDNVGSRV-----DYDAPGLWCTTMLYSADGSR-LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK 588 (1131)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 588 (1131)
++++.||++.|||++...... ....|.+.+..+.|++.|.. |+.-+. +-+.+.+.|+++++..+.+....+
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCcc
Confidence 999999999999998765443 23447778999999986643 222221 367899999998876555433222
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 589 -------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 589 -------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..+...+|+.++..+.+..++ .+.-|++..
T Consensus 296 ~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 296 VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 125556666666655555443 234455544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-06 Score=96.99 Aligned_cols=208 Identities=9% Similarity=0.035 Sum_probs=126.9
Q ss_pred eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc-EEEEEeCC---CcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 855 KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGMED---STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 855 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
.|.+-|........ +... +.+....|+| |++ +++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg~~~~~-~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTYQKV-IVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCceeE-EccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 46666665444332 3322 3778899999 665 46654443 468999998886544433 455667789999998
Q ss_pred EEEEE-eC--CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCC----eEEEEeCCCcccceeee
Q 001178 931 ILVSS-GS--DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET----QLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 931 ~l~s~-~~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----~i~vwd~~~~~~~~~~~ 1003 (1131)
.|+.. +. +..|.++++.+++... +. ... .......|+|||+.|+..++. .|+++|+.+++..+...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT--~~~--~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---IT--NYP--GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cc--cCC--CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 76643 33 3568888887765321 11 111 123345799999988876543 78999998877644332
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecC---------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATFTD---------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
.. . ....|||||++|+..... ..|.+.|++++... .+.... . .....|+|
T Consensus 319 ~g---~---~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~----------~---~~~p~~SP- 377 (419)
T PRK04043 319 HG---K---NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG----------V---NQFPRFSS- 377 (419)
T ss_pred CC---C---cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC----------C---cCCeEECC-
Confidence 21 1 124899999988887743 26888898888643 332211 0 01268999
Q ss_pred CCCeEEEEec-CCcEEEEecC
Q 001178 1075 EPNQLAVGLT-DGSVKVIEPS 1094 (1131)
Q Consensus 1075 ~~~~l~s~~~-Dg~v~iW~~~ 1094 (1131)
|+..++..+. .+.-.+|-+.
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEe
Confidence 4555554443 3443444444
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=100.43 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=110.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.+..+..+|.++ ++|++..+....++++..... . .+.++.. ....-...++.+..+......-.++
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~---~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-G---AKLLDVS---------CVPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC-c---ceeeeEe---------ecccCcceeeeeeccceEEEEeecC
Confidence 445566677776 688887777766666654432 1 1111111 1111223344444333333333344
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~~~~~ 506 (1131)
....+.+|....+.+. .+-||-..+++++|+||++ +++++..|..|||-. ..-..+..| -||...|..++..
T Consensus 130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~ 203 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT 203 (390)
T ss_pred CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence 5556666766654433 3679999999999999998 899999999999987 333344443 4899999999974
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
+ +..|+++|.|+++++||+.+++.+..+.
T Consensus 204 ~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 204 D---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c---CceeeecCCCCcEEEEecccCCcccccc
Confidence 3 3568999999999999999988775443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-06 Score=83.51 Aligned_cols=219 Identities=20% Similarity=0.177 Sum_probs=137.0
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecc--eeEEee---cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKL---KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~~~--~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
++.+. +|++||+- .|..|.|=..++. .++.+. +...-.-..++||||+..||.+...|+|+++|+...+...-
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45566 88888754 6667777655432 222332 22333467899999999999999999999999987554322
Q ss_pred eeeecCCCCCCCCceEEEEcCCC-------cEEEEEeCCeEEEEeCCC-----cccceeeecCCCCCCCeEEEEEccCCC
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQ-------VRLLVNHETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~-------~~l~~~~d~~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
.+.....+.....|..+.|.+-. .+|+....|.++=|-+.. .+.-..+.....+...|+++.+.|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22222233334567777776543 466777888888776532 223333333333467899999999999
Q ss_pred EEEEEec----C-------CcEEEEECCCCceeeEecCCccccC-------------------CCCCCCCccccEEEEEc
Q 001178 1023 LIYATFT----D-------GSIGVFDADSLRLRCRIAPSAYMSQ-------------------ASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1023 ~l~s~~~----d-------g~i~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~v~~~ 1072 (1131)
+|++|+. | ..+..|.+-++..-........... ........|+ .+.-+
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSlS 238 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSLS 238 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEEC
Confidence 9888882 1 2467787766544333211100000 0001122344 44556
Q ss_pred CCCCCeEEEEecCCcEEEEecCC--Cccccccc
Q 001178 1073 PQEPNQLAVGLTDGSVKVIEPSE--TERKWGVA 1103 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~v~iW~~~~--~~~~w~~~ 1103 (1131)
| |+.+||+...+|+|.+|+++. .+++|...
T Consensus 239 P-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 239 P-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred C-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 7 789999999999999999974 45668765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-06 Score=89.74 Aligned_cols=226 Identities=16% Similarity=0.162 Sum_probs=141.3
Q ss_pred CCeEEEEECCCceeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+|+|..||..+++.+....... ....+..+ + ++..+++++.++.++.||..+|+.+-.... .+++.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5889999999999998876421 22222233 2 344566678999999999999998876664 22222212 22355
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCC-
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVL- 1008 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~- 1008 (1131)
.++.++.|+.++.+|..+++............. ..........++..++++. ++.+..+|+.+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 667777888999999999887665322211111 1111222222366666655 899999999999998877664211
Q ss_pred CCC------eEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEE
Q 001178 1009 SSP------ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVG 1082 (1131)
Q Consensus 1009 ~~~------v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~ 1082 (1131)
... +.+-....++ .++.++.++.+.-+|+.+++.+.... ... .. -.... .+..|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-----------~~---~~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-----------IY---SLPSV-DGGTLYVT 218 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS------------EC---ECEEC-CCTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-----------cc---CCcee-eCCEEEEE
Confidence 111 2233333345 67777777764444999999664332 111 11 11223 45677777
Q ss_pred ecCCcEEEEecCCCccccc
Q 001178 1083 LTDGSVKVIEPSETERKWG 1101 (1131)
Q Consensus 1083 ~~Dg~v~iW~~~~~~~~w~ 1101 (1131)
+.|+.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999999996
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-07 Score=91.44 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=155.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC--ccceeeeeecCc------------CCeeEEEEecCCCceEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHV------------GGVNDLAFSYPNKQLCIV 472 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~V~~l~~s~d~~~~~l~ 472 (1131)
.....|+++.|...|.|||+|...|.|.+|.-.... ..+-..++++|. ..|..+.|..++..-.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345679999999999999999988999999865432 122223456664 347889998877655777
Q ss_pred EEcCCCcEEEEeCCCceeEEec----------CCccCeEEEeecccCCccEEE-EEe-cCCeEEEEeCCCCceeEEecCC
Q 001178 473 TCGDDKLIRVWDLSGRKLFQFE----------GHEAPVYSVCPHQKENIHFIF-STA-VDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 473 s~s~d~~i~iwd~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~-s~s-~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
..+.|++|++|.+-.+.+.... ...+++++..- ++. -.+ .|..|... .+...-..|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~-------l~lprls~hd~iiaa~-----p~rvyaNaH 171 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE-------LLLPRLSEHDEIIAAK-----PCRVYANAH 171 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH-------hhcccccccceEEEec-----cceeccccc
Confidence 7888999999994333222111 11222222110 000 000 11111111 112222457
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccC----CceEEEEEeCCC-CEEEEEEcCCcE
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRK----KSAGVVQFDTTR-NRILAAGEDNQI 612 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~----~~v~~~~~s~~~-~~l~~~~~dg~i 612 (1131)
...+.++.|+.|...++++- +-+|.+|++.-... +..+..|.- ..|++..|+|.. +.+.-.+..|.|
T Consensus 172 ~yhiNSiS~NsD~et~lSaD-----dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 172 PYHINSISFNSDKETLLSAD-----DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred eeEeeeeeecCchheeeecc-----ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 77899999999999999875 77899999764321 222222221 247778899875 455667788999
Q ss_pred EEEEcCCCeE------EEEEec--------cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcc
Q 001178 613 KFWDMDNVNM------LTSTEA--------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETR 674 (1131)
Q Consensus 613 ~iwd~~~~~~------~~~~~~--------~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 674 (1131)
++-|++...+ +..... .+-...|..+.|+++|+++++-.. -+++|||......+++++.-|
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 9999874221 111110 111236788999999998886543 589999998776666655443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=91.34 Aligned_cols=210 Identities=16% Similarity=0.243 Sum_probs=129.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
.|+.+.|+-+- .|++|..++.+......++.+.. .|+-.. ..-+..++..|+++-.+-+.+--+..+++++
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~--~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDD--GIDPFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhccc--CcCceeeeeccCCCCCcccccccCCceEecC
Confidence 37777777664 58899888888887776655543 121111 1112223445555555555555678899999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-----CCCcEEEEeCC-CceeEEecCCccCeEE
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-----DDKLIRVWDLS-GRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-----~d~~i~iwd~~-~~~~~~~~~h~~~v~~ 502 (1131)
.||.+.+.+.+.- ++....+..-...--+.+....+. .+.+++ .-+..+.|+.. .+.+..-......|.+
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CCceEEEEechHH--Hhhhhhcccccccccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999998762 221111221111122333444454 333332 11234455511 1111111112234899
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++-+|... +.+++|+.||.+-+||.++..... .+..|..++..+.|+| ++..|++++. +|.++.||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 99888665 788999999999999999875443 4567888999999998 6788999986 99999999765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-06 Score=85.33 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=146.7
Q ss_pred CeeEEEecC-CCCEEEEEe-CC-eEEEEECCCceeEEEEeCCCCCe--eEEEEeCCCCcEEEEEeC-----CCcEEEEEe
Q 001178 835 VVPCVALSK-NDSYVMSAG-GG-KVSLFNMMNFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGME-----DSTIQIYNV 904 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~-----dg~I~iwd~ 904 (1131)
....++.+| ++..++.+- -| ...+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 445688889 555666665 34 48999999999998887655442 3578999 8888887644 478999999
Q ss_pred e-cceeEEeecccccCeeEEEEccCCCEEEEEe------------------CCCcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 905 R-VDEVKTKLKGHQKHITGLAFSTNLNILVSSG------------------SDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 905 ~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~------------------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
. +.+.+..+..|.-.--.+.+.|||+.|+.+- ++-.+..-|..+++......+ +...+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Cccccc
Confidence 9 6677888887766667788999998877763 233566667777765444322 223333
Q ss_pred CCceEEEEcCCCcEEEEEe-CC-------eEEEEeCCCcccceeeecC----CCCCCCeEEEEEccCCCEEEEEe-cCCc
Q 001178 966 VGETRVQFHSDQVRLLVNH-ET-------QLAIYDGSKMECIRQWVPQ----DVLSSPISSAAYSCNSQLIYATF-TDGS 1032 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~-d~-------~i~vwd~~~~~~~~~~~~~----~~~~~~v~~i~~s~dg~~l~s~~-~dg~ 1032 (1131)
..+..+++.++|..++... .+ -+.+++... .+..+... ......+-+|+++++|.++++++ .-+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 6899999999999877642 11 144444332 22222211 12257899999999999887776 6789
Q ss_pred EEEEECCCCceeeEecC
Q 001178 1033 IGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1033 i~vwd~~~~~~~~~~~~ 1049 (1131)
+.+||..+++++.....
T Consensus 241 ~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL 257 (305)
T ss_pred EEEEECCCCCEeecccc
Confidence 99999999998877654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-06 Score=92.63 Aligned_cols=309 Identities=9% Similarity=0.066 Sum_probs=171.3
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEE-----EEE--EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCT-----TML--YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~-----~~~--~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
..++.++.+|.+.-+|.++++.+........ ... .+. ..-++..++.++. ++.++.+|.++|+.+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCccc
Confidence 4677777788888888888877776544321 000 000 0113445555543 78999999999998877
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC---cceEEEcCCCCEEEEEECCCcEEEE
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS---LPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
...... ......+ .+..++++..++.|+.+|..+|+.+........... ...... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 654221 1111122 245677888899999999999998877754321100 011111 13457778888999999
Q ss_pred ecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCC
Q 001178 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISD 739 (1131)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~ 739 (1131)
+..++..... .... .|. + .. .
T Consensus 221 d~~~G~~~W~-~~~~----------------------~~~-----------------------------~------~~-~ 241 (394)
T PRK11138 221 LMEQGQLIWQ-QRIS----------------------QPT-----------------------------G------AT-E 241 (394)
T ss_pred EccCChhhhe-eccc----------------------cCC-----------------------------C------cc-c
Confidence 9888743221 1000 000 0 00 0
Q ss_pred CCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 740 KTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 740 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
.-++++. ...+ .+ .+..+++++.+|.+..+|...++ .+|...
T Consensus 242 ~~~~~~~-------------------~~sP----~v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~ 283 (394)
T PRK11138 242 IDRLVDV-------------------DTTP----VV--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKRE 283 (394)
T ss_pred hhccccc-------------------CCCc----EE--ECCEEEEEEcCCeEEEEECCCCC-------------EEEeec
Confidence 0000000 0000 01 13445566667777666544321 234322
Q ss_pred CCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCC
Q 001178 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDS 897 (1131)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg 897 (1131)
.+ . ...+.. ++..+..++ +|.+..+|..+++.+-...... ....+..+. + ..|++++.+|
T Consensus 284 ~~---------~----~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G 345 (394)
T PRK11138 284 YG---------S----VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEG 345 (394)
T ss_pred CC---------C----ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 11 0 011222 334444444 8999999999998765443211 122233332 3 3567789999
Q ss_pred cEEEEEeecceeEEeecccccCeeE-EEEccCCCEEEEEeCCCcEEEEEc
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITG-LAFSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
.|+++|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999999988776544333332 222 2457888899999887764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.4e-06 Score=84.60 Aligned_cols=187 Identities=11% Similarity=0.134 Sum_probs=130.3
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEECC-CceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe----------------
Q 001178 838 CVALSKNDSYVMSAG------GGKVSLFNMM-NFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM---------------- 894 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 894 (1131)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3679999999 7888889988877788889999 776666552
Q ss_pred --CCCcEEEEEeecceeEEe--e--cccccCeeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceeeeeeeec-C
Q 001178 895 --EDSTIQIYNVRVDEVKTK--L--KGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRKSIAIQL-P 960 (1131)
Q Consensus 895 --~dg~I~iwd~~~~~~~~~--~--~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~v~lwd~~~~~~~~~~~~~~-~ 960 (1131)
.+-++...|..+|+++.+ + .-|.-.|..|++.++|..++..-..| -|-+++... ......... .
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123466677788888876 4 34888999999999987666543332 233443332 111111000 0
Q ss_pred CCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 961 AGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
......-+-+|++++++.++++++ .+.+.+||..+++.+...... .+..++-.+++ ++++.+ .|.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCC-CccEE
Confidence 011225688999999999998865 788999999999998876554 57777777777 666655 44433
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-07 Score=100.74 Aligned_cols=294 Identities=13% Similarity=0.206 Sum_probs=186.6
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.++-...+.++.++|.|+. +|.++.-| +.+-|+...-... + | +..--.-.|..+.|||...
T Consensus 20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp----r-~------------l~h~tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP----R-W------------LHHITPWQVADVQWSPHPA 80 (1081)
T ss_pred EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc----e-e------------eeccCcchhcceecccCCC
Confidence 3456678999999999986 67776554 4556665422111 0 0 0001112366677887543
Q ss_pred --EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCcc
Q 001178 423 --FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEA 498 (1131)
Q Consensus 423 --~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~ 498 (1131)
+-++......-.+|++.....-...+.+.||...|+++-|.|.... .+++++.|-.+..|| .-...+..+..-..
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence 4444445556789998765544455668899999999999998887 899999999999999 33445555555555
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.-..++|+... ..+++.+..+.|++||.+.+... ..+.++...|+.+.|..- ...+.+++. +++|..||...
T Consensus 160 ~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw~y~k 233 (1081)
T KOG0309|consen 160 AASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFWDYSK 233 (1081)
T ss_pred cCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeeecccc
Confidence 56778886543 24555666788999999877654 466777778888888753 334555544 99999999875
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEE--EEcCCcEEE---------EEcCC-CeEEEEEeccCCCCCcceEEEcC--
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILA--AGEDNQIKF---------WDMDN-VNMLTSTEAEGGLPSLPRLRFNK-- 642 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~i~~v~~sp-- 642 (1131)
...........+.++.--++.|-|.-.+. --.+..+.+ |+..+ ...++.+.+|.. .|....|-.
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRK 311 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcc
Confidence 44333333334446666666666542222 111113333 33333 245666665543 444333322
Q ss_pred --------CCCEEEEEECCCcEEEEecCCC
Q 001178 643 --------EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 --------~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..-.|++-+.|.++++|-+.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHH
Confidence 2346899999999999998654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-05 Score=90.18 Aligned_cols=212 Identities=10% Similarity=0.048 Sum_probs=124.0
Q ss_pred eCCeEEEEECCCceeEEEEeCCCCCe-----eEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccccc-------C
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK-------H 919 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~-------~ 919 (1131)
.++.|..+|..+|+.+-.+....... .+.... ++ .++.++.+|.+..+|..+|+.+-....... .
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 36778888888887776665321110 111222 23 456677889999999888876544321100 0
Q ss_pred eeEEEEcc--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 920 ITGLAFST--NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 920 V~~l~~s~--dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
...+..+| .+..++.++.+|.+..+|..+++........ ....+.. .++..++.+.++.+..+|..+|+
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--------SVNDFAV-DGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--------CccCcEE-ECCEEEEEcCCCeEEEEECCCCc
Confidence 11111122 2456777788999999999998765433211 1111222 23444455678999999999987
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
.+-...... .....+..+ .+.+|+.++.||.+++.|..+|+.+.+........ ... ++ + .+.
T Consensus 316 ~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~-----~s~---P~-~-----~~~ 377 (394)
T PRK11138 316 ELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGF-----LSE---PV-V-----ADD 377 (394)
T ss_pred EEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc-----eeC---CE-E-----ECC
Confidence 654332110 111222222 25577888999999999999999888775321000 011 11 1 235
Q ss_pred eEEEEecCCcEEEEec
Q 001178 1078 QLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~~ 1093 (1131)
.|+.++.||.|..+++
T Consensus 378 ~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 378 KLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEeCCceEEEEeC
Confidence 7889999999998875
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.8e-05 Score=80.43 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=138.0
Q ss_pred eEEEecC-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEe-CCCCcEEEEEeCCCcEEEEEeecceeEEee
Q 001178 837 PCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH-PQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 837 ~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~~~~~la~g~~dg~I~iwd~~~~~~~~~~ 913 (1131)
.+++|.+ ++.++++-. .+.|..|+..+++... +..+. ...+++. + ++.+++ +.. +.+.++|..+++.....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EET-TCEEEEETTTTEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEc-CceEEEecCCCcEEEEe
Confidence 3678887 555555544 7889999998876644 32222 7778888 5 666655 444 45566698888654333
Q ss_pred cc-----cccCeeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 914 KG-----HQKHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 914 ~~-----h~~~V~~l~~s~dg~~l~s~~~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
.. .....+.+++.++|++.++.... |.|..++.. ++.. ...... .....++|+||++.|
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~------~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGL------GFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEE------SSEEEEEEETTSSEE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCc------ccccceEECCcchhe
Confidence 32 34567899999999988876654 456777766 3321 111111 445789999999988
Q ss_pred EEEe--CCeEEEEeCCCccc----ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCcccc
Q 001178 981 LVNH--ETQLAIYDGSKMEC----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 981 ~~~~--d~~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
++.. .+.|..|++..... ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+....
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--- 224 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--- 224 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS---
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC---
Confidence 7654 67788888863222 12222221112348899999999988887788999999987 88888877432
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
-.+.+++|.-.+.+.|..
T Consensus 225 ---------~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 225 ---------PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp ---------SSEEEEEEESTTSSEEEE
T ss_pred ---------CCEEEEEEECCCCCEEEE
Confidence 135578885334344433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00014 Score=71.06 Aligned_cols=138 Identities=9% Similarity=-0.013 Sum_probs=91.2
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA 591 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 591 (1131)
.+++.|+..+.+.--|..+++...+..... .+.+-+.- -|++++.+.. .+.+++.+..+|.....+.....-.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhhhcc
Confidence 466677777777777777766665433222 22222222 4777888887 88999999999988777764332122
Q ss_pred EEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 592 GVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 592 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
.....+++..+++|+.|++.+..|..+...+...+..+. ...+-+..|-...|+.+...|.+.-
T Consensus 98 -~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 98 -RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred -ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCCceEEEEeccceEEE
Confidence 245677899999999999999999999999888776654 2334455553334444555554433
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=84.17 Aligned_cols=74 Identities=24% Similarity=0.457 Sum_probs=64.4
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee-EEeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCC
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-KTKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~ 948 (1131)
..|++++-+|...+++++|+.||.+-+||.+.... ...++.|..+|+.+-|+|. +..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34899999997788999999999999999987743 3457899999999999985 67899999999999999875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-06 Score=80.53 Aligned_cols=175 Identities=8% Similarity=-0.013 Sum_probs=120.4
Q ss_pred EEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 363 LVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS--ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 363 lasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
+..++.|.++++.++..+..... -|. -.+.++++|+|++++++.+....|-.|.+..
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~---------------------~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~ 189 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFA---------------------VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDD 189 (344)
T ss_pred eeeccCCcceeEEEEecCcccce---------------------eeccccceeeeEEcCCCceEEEecCCCcceEEEeCC
Confidence 45567788888888875543321 122 2388999999999999999999999999987
Q ss_pred CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC-CceeE----EecCCccCeEEEeecccCCccEE
Q 001178 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS-GRKLF----QFEGHEAPVYSVCPHQKENIHFI 514 (1131)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~-~~~~~----~~~~h~~~v~~~~~~~~~~~~~l 514 (1131)
.............+..-.+..|+.... .+|++..||++.||| .. +.+.. +-..|.+.+..+.|++.+...+|
T Consensus 190 ~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred ccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEE
Confidence 554332223333445567889998887 799999999999999 32 22222 22358899999999876655677
Q ss_pred EEEecCCeEEEEeCCCCceeEEecCCC--------ceEEEEEEccCCCEEEEEe
Q 001178 515 FSTAVDGKIKAWLYDNVGSRVDYDAPG--------LWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~v~~~~~s~~g~~l~~~~ 560 (1131)
+..-.-+.+.+.|+++......+.... ..|....|+.++..+.+..
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 777777899999998876544332221 1255556666555554443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-05 Score=79.87 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=119.9
Q ss_pred eeEEEec-CCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeCCCCcEEEEEeCC--------CcEEE
Q 001178 836 VPCVALS-KNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGMED--------STIQI 901 (1131)
Q Consensus 836 i~~l~~s-~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~d--------g~I~i 901 (1131)
...+++. ++++ ++++..+.+.++|..+++....... .......+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677887 6655 4555555566669998866544432 345688999999 78877766544 44666
Q ss_pred EEeecceeEEeecccccCeeEEEEccCCCEEE-EEeCCCcEEEEEcCCCce--eeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILV-SSGSDAQLIFWNTDTWEK--RKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 902 wd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
++.. ++.... ...-...+.|+|+||++.|. +-+..+.|..+++..... ............ ......+++..+|+
T Consensus 120 ~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGN 196 (246)
T ss_dssp EETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-
T ss_pred ECCC-CeEEEE-ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCC
Confidence 6655 443333 33455678999999998765 566778899999864332 111222111111 13467899999998
Q ss_pred EEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 001178 979 RLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1131)
Q Consensus 979 ~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~ 1028 (1131)
+.++. ..+.|.+++.+ |+.+..+... ...+++++|. ++.+.|+..+
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 77765 58899999988 8888877766 4589999994 6767666654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=85.39 Aligned_cols=257 Identities=15% Similarity=0.247 Sum_probs=162.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeec-ccccccceeceeccC--CCCCEEEEEEcCCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWD-MSNCSMMLQAAIVKD--SSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--h~~~V~~~~~spdg~ 422 (1131)
..+.|++|.|...|.| ||+|...|.|.++.-.....- .++.+. ++ ++......++. -...|..+.|..++.
T Consensus 25 ead~ItaVefd~tg~Y-latGDkgGRVvlfer~~s~~c---eykf~teFQ--she~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 25 EADKITAVEFDETGLY-LATGDKGGRVVLFEREKSYGC---EYKFFTEFQ--SHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred ccceeeEEEeccccce-EeecCCCceEEEeeccccccc---chhhhhhhc--ccccchhhhhhccHHHHhhheeeecCCC
Confidence 5678999999999985 999988899999986543310 011000 00 00000001111 135688899887654
Q ss_pred --EEEEEeCCCeEEEEEecCCCc-------------------------cc--------------eeee-eecCcCCeeEE
Q 001178 423 --FIGVAFTKHLIHLYTYQGSND-------------------------LC--------------QSLE-IDAHVGGVNDL 460 (1131)
Q Consensus 423 --~las~~~d~~i~vwd~~~~~~-------------------------~~--------------~~~~-~~~h~~~V~~l 460 (1131)
.++..+.|++|++|.+..... +. +... -..|..-|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 455567899999998754300 00 0001 14677778999
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe--C-CCc-eeEEecCCc-----cCeEEEeecccCCccEEEEEecCCeEEEEeCCCC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD--L-SGR-KLFQFEGHE-----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV 531 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd--~-~~~-~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~ 531 (1131)
.|..|.. .++++ +|-.|-+|+ . .+. .+..++.|. .-|++..|+|... ..+.-.+..|.|++-|++..
T Consensus 179 S~NsD~e--t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 179 SFNSDKE--TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eecCchh--eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhh
Confidence 9999888 45554 577899999 2 222 233444443 4577888887554 56666777899999998732
Q ss_pred c------eeEE----------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccC------
Q 001178 532 G------SRVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRK------ 588 (1131)
Q Consensus 532 ~------~~~~----------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~------ 588 (1131)
. .... +......|..+.|+++|+++++-. -.++.+||.... .++.+...|..
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHH
Confidence 1 1111 111223688899999999999875 568999998764 45666544321
Q ss_pred -----CceE---EEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 589 -----KSAG---VVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 589 -----~~v~---~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..|. -+.|+.+...+++|+..+..-++-.
T Consensus 330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 1222 3678888888888888777666653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-07 Score=93.00 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=102.3
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE----EeCCeEEEEeCCC
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHETQLAIYDGSK 995 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~----~~d~~i~vwd~~~ 995 (1131)
...+..++++++||++..+....++++...... ......... ......+.|..+.....+ |+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~-~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG-AKLLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc-ceeeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344566777788888777777666666553321 111111000 023344555555544443 3456677777776
Q ss_pred cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE 1075 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~ 1075 (1131)
+.+.. ..+ |-+.++.++||||+++|++++.|..|+|-.+..-..+..+- .+ |...|-.+++. +
T Consensus 142 ~~~~~-~lG---hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-----lG----H~eFVS~isl~----~ 204 (390)
T KOG3914|consen 142 GRCEP-ILG---HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-----LG----HKEFVSTISLT----D 204 (390)
T ss_pred cCcch-hhh---hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc-----cc----cHhheeeeeec----c
Confidence 44433 233 47899999999999999999999999998876544433332 21 34445545553 5
Q ss_pred CCeEEEEecCCcEEEEecCCCccc
Q 001178 1076 PNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1076 ~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
++.|++||.|++|++||+.++...
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred CceeeecCCCCcEEEEecccCCcc
Confidence 577999999999999999988765
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=88.92 Aligned_cols=290 Identities=14% Similarity=0.139 Sum_probs=189.4
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+.|.+.|+.|.-+-.. ++.+++.||.++.|.-..-.-+. + ..-+..|-+.|.+++.|-||.
T Consensus 5 symhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---f-------------VKhFraHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---F-------------VKHFRAHLGVILSLAVSYDGW 66 (558)
T ss_pred hhcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---e-------------hhhhHHHHHHHHhhhccccce
Confidence 34588888888776543 68999999999999754311110 0 012557888999999999999
Q ss_pred EEEEEeC-CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe--CCCce-eEEecCCc
Q 001178 423 FIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD--LSGRK-LFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd--~~~~~-~~~~~~h~ 497 (1131)
++.+.+. |..++++|+++-..+.-. .+.--.+.+. ...++. -..++.++.-.++.+.|+| ..+.. ...-.-|.
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~ 144 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF 144 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhc-ccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc
Confidence 9999777 999999999875433111 1111122222 112222 1111344455788999999 34423 34445699
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCC------CceeE---------EecCCCceEEEEEEccCCCEEEEEeec
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------VGSRV---------DYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~------~~~~~---------~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+|..+.+.+.. +.+++....|.|.-|..+. ..... .+........++.|+|+|..+.+.+.
T Consensus 145 sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~- 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP- 221 (558)
T ss_pred CceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-
Confidence 999999987655 5788888899999998773 11111 12223345789999999999999875
Q ss_pred CCCCceEEEEeCCCCeeeEEEec--------------------------------ccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIG--------------------------------FRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
+..|++++..+|++++.+.. +.......+.|...+++|+-++-=|
T Consensus 222 ---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 222 ---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred ---ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 89999999998887654321 1111234477888899999887755
Q ss_pred cEEEEEcCCCeEEEEEeccCCCC-----------------------CcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLP-----------------------SLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~-----------------------~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
|++.++.++...+.+....... .-..+.+.+|..+++++-....++++
T Consensus 299 -ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 299 -IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred -EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 8899999888777653221100 00123355566666666666677766
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00017 Score=75.64 Aligned_cols=206 Identities=19% Similarity=0.211 Sum_probs=133.5
Q ss_pred EEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-cceeEEe-
Q 001178 838 CVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTK- 912 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~- 912 (1131)
.+++|.||+++.+.. ...|.|-|+..++.+.++..+. +..+--++ ++-+.+-+.||.+.-..+. .|+....
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC--CCceEEEecCCceEEEEECCCCCEeEee
Confidence 468889999988876 4679999999999999887543 33333333 3457788899999999887 4544322
Q ss_pred ---ecccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC------CCCCCceEEEEcCCCcEEEE
Q 001178 913 ---LKGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAG------KLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ---~~~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~------~~~~~v~~v~~s~d~~~l~~ 982 (1131)
+..-..++ ..-+++..+..++-.+-+|.|+--|+................ =.+..-..+++++....|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 21222222 234555556666667888988888888765433333332210 01134556889887776665
Q ss_pred ----EeC-------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 983 ----NHE-------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 983 ----~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+.+ ..|.+||+.+++.+.++... .++.+|+.+.|.+ +|++.+ .++.+.+||..+|+.+..+..
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 211 24888899999999998764 3688999999888 665554 578999999999999998875
Q ss_pred Cc
Q 001178 1050 SA 1051 (1131)
Q Consensus 1050 ~~ 1051 (1131)
..
T Consensus 331 lG 332 (342)
T PF06433_consen 331 LG 332 (342)
T ss_dssp -S
T ss_pred cC
Confidence 33
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-05 Score=93.23 Aligned_cols=273 Identities=9% Similarity=0.119 Sum_probs=164.2
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
....|.++.|-.++..++.+...|.+.+-|.++.... ..+.-...|.+++||||+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGNVDNGISAASWSPDE 121 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeeeccCceEEEeecCCC
Confidence 3478999999999999999999999877654432111 112357889999999999
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce-----e------EEeec
Q 001178 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-----V------KTKLK 914 (1131)
Q Consensus 846 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~-----~------~~~~~ 914 (1131)
+.++....+...++...+..++.....+. .-.+ .++.+ .+++...=.-+.-..|+ . .....
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v-~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~ 193 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFV-NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIE 193 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccc-eecccccceeeecchhhhcccccccccccccchh
Confidence 99999986444445444554443322111 0011 11222 22222111111111110 0 01111
Q ss_pred ccccCeeEEEEccCCCEEEEEe----CC-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE----EeC
Q 001178 915 GHQKHITGLAFSTNLNILVSSG----SD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV----NHE 985 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~----~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~----~~d 985 (1131)
-.+.=+.+.|--||.++|+.. .+ +.|++||-+. .. ..........-.+++|-|.|..+++ ++|
T Consensus 194 -~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~L------ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 194 -QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-AL------NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred -hccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hh------hcccCcccccccceeecCCCCeEeeeeecCCC
Confidence 122346789999999988832 23 7899999873 21 1111112244568999999999998 357
Q ss_pred CeEEEEeCCC---cccceeeecCCCCCCCeEEEEEccCCCEEEE---EecCCcEEEEECCCCceeeEecCCccccCCCCC
Q 001178 986 TQLAIYDGSK---MECIRQWVPQDVLSSPISSAAYSCNSQLIYA---TFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN 1059 (1131)
Q Consensus 986 ~~i~vwd~~~---~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1059 (1131)
+.|.+|.-+. |+....+... ..++..++|+.++..|++ ......|++|-..+..---+.. -..+..
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~d---e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~--l~~~~~--- 337 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLD---EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQE--LQFSQK--- 337 (1265)
T ss_pred CcEEEEecCCccccccccCCccc---ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEE--Eecccc---
Confidence 7899998653 2222222222 344999999999999998 4455569999987654322221 111110
Q ss_pred CCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1060 SSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1060 ~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
. -+.|+|..+..|..-..+|.+.+.++.
T Consensus 338 ----~---~~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 338 ----A---LLMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ----c---cccccCCCceeEEEEecCCcEEEEEEE
Confidence 1 178999888888887788887777764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=82.31 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=145.1
Q ss_pred eccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 404 IVKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
++.+|...|..++|||..+ +|..++.+.+|+|.|+++..++. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 6788999999999999877 78889999999999999976544 45556 78999999999876 8899999999999
Q ss_pred Ee--CCCceeEEecC--CccCeEEEeeccc----CCccEEEEEecCCeEEEEeCCCCceeE--EecC-CCceEEEEEEcc
Q 001178 483 WD--LSGRKLFQFEG--HEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDA-PGLWCTTMLYSA 551 (1131)
Q Consensus 483 wd--~~~~~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~-~~~~v~~~~~s~ 551 (1131)
+| .....+..+.+ ...+|..++..+. +.+.+++..+.+ ...|.+....... .... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33344444433 2334544432211 112233333322 3456543322211 1111 234566677776
Q ss_pred CCCEEEEEeecCCCCceE----EEEeCCCCeeeEEEeccc-CC---c---eEEEEEeCCCCEEEE-EEcCCcEEEEEcCC
Q 001178 552 DGSRLFSCGTSKEGDSHL----VEWNESEGALKRTYIGFR-KK---S---AGVVQFDTTRNRILA-AGEDNQIKFWDMDN 619 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i----~iwd~~~~~~~~~~~~~~-~~---~---v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 619 (1131)
-.+.++....+...-.++ .--|-.+|..+...+... +. . -.++.-.++.++++. +.+.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 556655544321111111 111223333332211111 10 0 111222345555554 55678899999999
Q ss_pred CeEEEEEeccCCCCCcceEEEcC-CC-CEEEEEECCCcEEEEecC
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNK-EG-NLLVVTTADQGIKILANA 662 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp-~~-~~l~~~~~dg~i~iw~~~ 662 (1131)
++.++.+.... +|.++.... ++ .+|++- .|..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 99999987763 566655433 33 355544 45578888654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=3e-05 Score=81.86 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=120.7
Q ss_pred CCCEEEEE-eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-cccc---c
Q 001178 844 NDSYVMSA-GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-KGHQ---K 918 (1131)
Q Consensus 844 dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-~~h~---~ 918 (1131)
++..++++ .++.|..||..+|+.+.++.......... .. .+..+++++.++.++.+|..+|+.+-.. .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-ee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 55556565 48999999999999998887532211222 22 2334556778889999999999988773 3221 1
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC----CCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP----VGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~----~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
.........++..++.+..++.|..+|+++|+............... .....-....++..+++..++.+..+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 12233333347888888889999999999998766655433221100 11122223334544444556654434999
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
+++.+-... . . .+.. ....++..|++++.++.|..||+.+|+...
T Consensus 192 tg~~~w~~~-~---~-~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 192 TGEKLWSKP-I---S-GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTEEEEEEC-S---S--ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCEEEEec-C---C-CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 998553222 1 1 2222 145678888888899999999999998764
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=96.19 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=133.6
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
++..++.|+ ...+..+|+.+.+..+......+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566666 788999999999888887765555665555 7789999999999999999999999999999999988
Q ss_pred EEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC--CcEEEEEeCCeEEEE
Q 001178 923 LAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD--QVRLLVNHETQLAIY 991 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~d~~i~vw 991 (1131)
+.. .|+.|+++|. |..|+|||+..-+.... ++.+. ...-+.|.|. .+..+++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~-----~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPY-----GPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC--ccccc-----CchhhhhcccccceEEEEecccceeec
Confidence 766 4889999875 67899999988543322 22222 2244566664 344455678889888
Q ss_pred eCCCcc-c-ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 992 DGSKME-C-IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 992 d~~~~~-~-~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
|..+.. . ......+. ....+.++++|++|..||.|..+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 844321 1 11111111 145699999999999999999999999997
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-05 Score=86.56 Aligned_cols=222 Identities=14% Similarity=0.155 Sum_probs=128.5
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CC
Q 001178 413 SRVAWSPDGNFIGVAFT----KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG 487 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~ 487 (1131)
+-..|+|...++|+++. .|.|-||-- +|+.- ...+.+-| +++++|+|..- +|+.|=.-|.+.+|.. +.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPq-r~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQ-RDVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CCCCC-ccccccee---hhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 34679999889888853 478888853 44422 22233334 67899999876 7888888999999994 44
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--C--Cc--eEEEEEEccCCCEEE---E
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--P--GL--WCTTMLYSADGSRLF---S 558 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~--~~--~v~~~~~s~~g~~l~---~ 558 (1131)
+.-.....|..+|..+.|+ ++|..++++..-|.+.+|.++..+....... | +. ...+...++++.-++ -
T Consensus 92 e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 4444455799999999995 5668999999999999998875443332111 1 11 223444456543221 1
Q ss_pred EeecCCCCc--eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 559 CGTSKEGDS--HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 559 ~~~~~~~~~--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++-.+|..+ ...-|..+.. .+... -.-.|+|..++.++.+|+|+--|- .|+.....+... ..
T Consensus 170 aaVtgDe~alD~~fnwk~~~a--~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS----~v 233 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLA--ERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDS----EV 233 (1416)
T ss_pred hhccCchhhhcccccCccchh--hcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccc----hH
Confidence 110111111 1122221111 11110 112467888889999999988774 455555544332 23
Q ss_pred eEEEcCCCCEEEEEECCCcEEEE
Q 001178 637 RLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.+-|.+...-+++-..+-.+.++
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~ 256 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLI 256 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEE
Confidence 44555544444444444444443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.1e-07 Score=89.19 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=123.2
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
+.++||-+-.-.-++.+.+-.|-+-|+++|-... + ...+.|.++.|...+.++..|..+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence 3346664422122444557788999998875432 2 246789999999989999999999
Q ss_pred CeEEEEEecCCCc--cceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCce---eEEecCCccCeEEE
Q 001178 431 HLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGHEAPVYSV 503 (1131)
Q Consensus 431 ~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~h~~~v~~~ 503 (1131)
|.|.++|++.+.. ..+... .-|...|+++.... +++ +|++.+.+|.|++|| ..-++ +..+.||...-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 9999999987522 112222 34899999998887 555 789999999999999 44444 88999998776666
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
-++..+....++++++|-..|+|.++.+....++...
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666666678999999999999999988777665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.6e-07 Score=62.53 Aligned_cols=39 Identities=28% Similarity=0.572 Sum_probs=37.1
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
++++..+++|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=82.92 Aligned_cols=184 Identities=9% Similarity=0.005 Sum_probs=118.3
Q ss_pred EEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEEeecceeEEe
Q 001178 839 VALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYNVRVDEVKTK 912 (1131)
Q Consensus 839 l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd~~~~~~~~~ 912 (1131)
+=+++||+.+...+ .+.+.+.|.++.+...++.... ....++++| +++++++.+.+. ++...+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34567888775554 5779999999988887776533 557789999 777777775322 233332222111111
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CC
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT----WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ET 986 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~----~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 986 (1131)
+.-. . .-++.++|++... .++.|.+.|..+ +.. ....+ +.+ .....+.++|||++++++. +.
T Consensus 276 fni~--~--iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~-v~~yI--PVG---KsPHGV~vSPDGkylyVanklS~ 343 (635)
T PRK02888 276 FNIA--R--IEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA-LTRYV--PVP---KNPHGVNTSPDGKYFIANGKLSP 343 (635)
T ss_pred EchH--H--HHHhhhCCCEEEE--CCCEEEEEECCccccCCcc-eEEEE--ECC---CCccceEECCCCCEEEEeCCCCC
Confidence 1100 0 0134557877665 367899999887 221 11112 222 4566799999999999864 88
Q ss_pred eEEEEeCCCccc------------ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 987 QLAIYDGSKMEC------------IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 987 ~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.+.|+|+.+.+. +.+... ...-...+|.++|....+-..|..|..|++.+
T Consensus 344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999999987553 223222 22334668999999888888999999999986
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.8e-06 Score=84.84 Aligned_cols=213 Identities=11% Similarity=0.152 Sum_probs=143.9
Q ss_pred cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC----ceeEEecCCccCeEEEeecccCCccEEEEEec-CCeEEEE
Q 001178 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAW 526 (1131)
Q Consensus 452 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~w 526 (1131)
-|...|+.+.-+.. + ++.+++.||.++.|..+. +.+..+..|.+.|.+++.+ -++..+.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka-~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S--~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA-K--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS--YDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh-h--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc--ccceeEeeccCcccceeEE
Confidence 47777777766543 3 799999999999999433 2345567888888888874 45577888777 9999999
Q ss_pred eCCCCceeEEecCCCceEEEEEEccCC--CEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEEEEeCCCCEE
Q 001178 527 LYDNVGSRVDYDAPGLWCTTMLYSADG--SRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
|+++......+....-+=.+-.+...| .-+++.+. -.++.+.++|-.... ....+.+.+-.+|..+.+.+.+..+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 988755442211111111111122223 22222221 237889999976543 4455566666699999999999999
Q ss_pred EEEEcCCcEEEEEcCC------CeEEEEEec-------cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhh
Q 001178 604 LAAGEDNQIKFWDMDN------VNMLTSTEA-------EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRA 670 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 670 (1131)
++....|.|.-|.... .+....++. ........++.|+|+|..+.+-+.|..|+++...++ +..+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqe 238 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQE 238 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhh
Confidence 9999999999999873 111111111 112235689999999999999999999999999988 55555
Q ss_pred hh
Q 001178 671 IE 672 (1131)
Q Consensus 671 ~~ 672 (1131)
+.
T Consensus 239 iD 240 (558)
T KOG0882|consen 239 ID 240 (558)
T ss_pred hh
Confidence 53
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.9e-07 Score=102.28 Aligned_cols=201 Identities=17% Similarity=0.198 Sum_probs=146.4
Q ss_pred eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC--cEE
Q 001178 865 KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--QLI 942 (1131)
Q Consensus 865 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--~v~ 942 (1131)
+..+.|..+...-+|++|+- +.++|++|+..|.|++|++.+|........|..+|+-+.-+.||..+.+.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34556677788899999999 889999999999999999999999999999999999999999999877665533 467
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-CCCCCCeEEEEEccC
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCN 1020 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~d 1020 (1131)
+|+..+--. ..|.-....++.|+....+-+.|. .....+||+.++....++... ...+..-+++.|||+
T Consensus 1171 LW~~~s~~~---------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASSTGG---------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred HhccccccC---------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 999876111 111124567788888766555554 456789999999888775433 222333478899999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccc
Q 001178 1021 SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
.++++- || .+||++..+.+.++....-.. .=.|||+ ++.++.-++ |||+.+-...
T Consensus 1242 D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-------------~G~FHP~-g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1242 DTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-------------GGGFHPS-GNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred cceEee---Cc--eeeeeccHHHHhhhhhheecc-------------cccccCC-CceEEeech-----hhhhHHHHHH
Confidence 998885 44 579999887777766444111 1257884 566666553 7887665543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00026 Score=74.28 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=89.1
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee--c----CCCCceEEEEeCCCCeeeEEEecccC------
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT--S----KEGDSHLVEWNESEGALKRTYIGFRK------ 588 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~----~~~~~~i~iwd~~~~~~~~~~~~~~~------ 588 (1131)
+++.++|.++++.+-.+... ..-.+..+||++.++++.. + +.-.-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47888888777655444322 2334678999999987653 1 11234689999999877765543221
Q ss_pred CceEEEEEeCCCCEEEEE--EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 589 KSAGVVQFDTTRNRILAA--GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 589 ~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
......+++.+++++++. +-..+|.|-|+..++.+..+...+. ..+--+++ +-+.+-+.||.+.-..+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSGN-RGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEET-TEEEEEETTSCEEEEEETST
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecCC-CceEEEecCCceEEEEECCC
Confidence 112236788999988874 4466799999999999988876652 22222222 45778889999998888643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.9e-06 Score=85.97 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCc--------cHHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFF--------NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEI 76 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1131)
+.-+-|+|..||..+||..+|..|-++|.+.- ++...+++|++|+...|+...+.-..-.. +....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhHH
Confidence 45578999999999999999999999999851 37788999999999999888765411111 1222378999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001178 77 RKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1131)
Q Consensus 77 ~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1131)
..|.|+||+..+++.+|+.+.++++.|.......+++....+|.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999876778888888898886554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.016 Score=68.02 Aligned_cols=601 Identities=11% Similarity=0.050 Sum_probs=286.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC--
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG-- 421 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg-- 421 (1131)
++..+-..|+..-++| +|.+|+.-|.=++-.+.+......+.. ....+ ..-++|..++.-.+.
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~~------------ilet~-~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYVV------------ILETF-VNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchhh------------hhhhc-ccccceeeEEEEecccc
Confidence 3444555667777777 588898877666666654332211000 00001 122477777765432
Q ss_pred --CEEEEEe---CCCeEEEEEecCCCccceeeeeecCcCCeeEEE--EecCCCceEEEEEcCCCcEEEEeCCCceeE-Ee
Q 001178 422 --NFIGVAF---TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVTCGDDKLIRVWDLSGRKLF-QF 493 (1131)
Q Consensus 422 --~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~--~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~ 493 (1131)
..+++|+ .||++++..-.-+-.......+.| -..++.+. +.+.-.. +++.+-- +.-++...+++... ..
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEec-cceEEEEEccceEEecc
Confidence 3555553 478888876433322222224555 44567776 4443332 2333322 23344454444211 12
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd 573 (1131)
.+.......+..+... ++.|+-.. ...||+++-. .....+..... ++....+.+...++.++. ++.+...+
T Consensus 445 ~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYLE 515 (1096)
T ss_pred ccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEEE
Confidence 2222333333322211 12222221 2345665533 12222232222 333444445555666553 55666666
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCC------CEEEEEEcCCcEEEEE-cCCCeEEEEEec--cCCCCCcceEEEcCCC
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTR------NRILAAGEDNQIKFWD-MDNVNMLTSTEA--EGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~~~~~dg~i~iwd-~~~~~~~~~~~~--~~~~~~i~~v~~sp~~ 644 (1131)
+..+.+...........+.|+.++|-+ +.+++|..+..+.+.- ......+..... ..-...|.-..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 666654333333334478899888753 2677777665554433 333333322211 1111234445566678
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhh---ccccccccccccccccCccceecccccccccccccCCCCCCccccccCC
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIE---TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGA 721 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~ 721 (1131)
.+|.++..||.+.-+.+....-.....+ ....++..-....+....+.+.+-.|.......++--..+-..+-+...
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~ 675 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM 675 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence 8999999999988776544321111111 0011111000001111111111111211111111100000000000000
Q ss_pred CccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCC
Q 001178 722 DSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ 801 (1131)
Q Consensus 722 ~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 801 (1131)
...........+.....+.+++..++....... .++|. ......+++.+....+.+.+....... +
T Consensus 676 c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~i---rtvpl----~~~prrI~~q~~sl~~~v~s~r~e~~~------~- 741 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASANGGALTIGTIDEIQKLHI---RTVPL----GESPRRICYQESSLTFGVLSNRIESSA------E- 741 (1096)
T ss_pred cccccccCCceEEEecCCceEEEEecchhhcce---eeecC----CCChhheEecccceEEEEEecccccch------h-
Confidence 000011111112222234555555554332111 11222 234456667664444444443221110 0
Q ss_pred CCCCccceeeeceeecCCCCcccccCCCC--CCCCCeeEEEecCC-CCEEEEEe-----------CCeEEEEECCCceeE
Q 001178 802 NPSGKATAAVAPQHWQPSNGLLMTNDVPE--NAEDVVPCVALSKN-DSYVMSAG-----------GGKVSLFNMMNFKVM 867 (1131)
Q Consensus 802 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~~~i~~l~~s~d-g~~la~~~-----------dg~i~vwd~~~~~~~ 867 (1131)
..+.....-.++++|.++-+.+...-.. .....+.++.|..| +.++++|. .|.|.||.+..+..+
T Consensus 742 -~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 742 -YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred -hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 0111112224567777776654421111 12233444458777 77888772 267888887774443
Q ss_pred EEEeC--CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 868 TTFMS--PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 868 ~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+.... -.+.+.++..- +++++| +-+..|++|++.+.+.+..-..|..++..+...-.|..++.|.--+.+.+-.
T Consensus 821 ~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQ 896 (1096)
T ss_pred eeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEE
Confidence 33322 23445554433 577775 4567899999999987877778999999999999999999999888777665
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
.+..+.. .......-.+...+++.+-.+..++.+-.+|.+.+-..
T Consensus 897 y~~~eg~---f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 897 YKGDEGN---FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred EeccCCc---eEEeehhhCccceeeEEEecCceEEeecccccEEEEEe
Confidence 5543311 11122222336778888888888887766676665543
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=81.89 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001178 38 MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQ 117 (1131)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1131)
...++++|++|+++.|++.++.....-... ...+.|.|+.|+|+||+..++..+|+.+.|+.+.|......+.++++..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 567899999999999999998773221111 2238999999999999999999999999999997765434578888888
Q ss_pred hhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCcCccccccCCCCC-hHHHHHHHHHHHHHH
Q 001178 118 LLTLENFRE--NEQLSKYGDTRSARTIMLVELKKLIEANPLFRDKLVFPSLK-TSRLRTLINQSLNWQ 182 (1131)
Q Consensus 118 ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1131)
+|..++..+ ...+...- ....|+++.+.+.+.+-... . +| .+.|..++.+....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~------~---~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSY------G---LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHh------C---cCCCCHHHHHHHHHHHHh
Confidence 888876654 22333332 23778899888887654421 2 33 466888877766544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=86.52 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=121.6
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC----cee
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV----GSR 534 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~ 534 (1131)
.++|+-+-.... ++.+.+..|-+-|..+.....|. ..+.|.++.|+... ++++.|+..|.|...|++.. ...
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcc
Confidence 346664433313 66667778888885554555554 56778888886544 69999999999999999876 333
Q ss_pred EEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccCCceE-EEEEeCCCCEEEEEEcC
Q 001178 535 VDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAG-VVQFDTTRNRILAAGED 609 (1131)
Q Consensus 535 ~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d 609 (1131)
...-.|...|+++..-. ++.+|++.+. +|.|.+||.+.-++ ++.+.+|-+.... -+.+.+....++++++|
T Consensus 292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 292 AQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred eEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 34445777888888877 7778877765 99999999987666 8899998663222 24456677889999999
Q ss_pred CcEEEEEcCCCeEEEEEeccC
Q 001178 610 NQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~ 630 (1131)
...+||.++.+.++.+++...
T Consensus 368 cytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eEEEEEecccCceeeccCCCC
Confidence 999999999999998887653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00012 Score=82.86 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=74.5
Q ss_pred ecCCCCEEEEEeCCeEEEEECCC-----ceeEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeeccee-----
Q 001178 841 LSKNDSYVMSAGGGKVSLFNMMN-----FKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEV----- 909 (1131)
Q Consensus 841 ~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~~----- 909 (1131)
+.++|++... .+++|.+.|..+ .+.+..+. -......++++| |++++ +++..+.+|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457776665 467899999988 34555554 345688899999 55555 5555689999999987542
Q ss_pred -------EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 910 -------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 910 -------~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.....--.+ -...+|.++|+...|-..|..|..|++..
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332222 24578999999999999999999999987
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0018 Score=63.46 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=79.7
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
..-+|.+.+++.|+..+.+.--|..+|+.+-+ . + -..+|.+-+.- -|++++.|...|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We-------~----------i---lg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE-------A----------I---LGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee-------h----------h---hCceeeeeeEE-ECCEEEEEEccCcE
Confidence 34456667899999999999999999887532 1 1 12233332222 57789999999999
Q ss_pred EEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
.+-+.++|+.......+..- . ......+++. ++..|+.|++.+..| .+..++.+.+
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence 99999999766543322211 1 2234456777 899999999999999 7777776654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-05 Score=80.15 Aligned_cols=245 Identities=14% Similarity=0.106 Sum_probs=144.1
Q ss_pred CCCCCeeEEEecCCCC-EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 831 NAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 831 ~~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
.+...|+.++|||..+ ++..++ +.+|+|.|+++..+...+..+ ..+.+++|.-++.++|..|..+|.|.|||+...+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 6788999999999988 566677 899999999999999998877 7899999999888999999999999999998543
Q ss_pred e-EEeecc--cccCeeEEEE------ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 909 V-KTKLKG--HQKHITGLAF------STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 909 ~-~~~~~~--h~~~V~~l~~------s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
- +..+.+ -..+|..++. .+-|.+|+....+ +..|++.....-... ...-..++...+++..+..+.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~---vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPC---VLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCc---ccccCCCcceeeeeecCccce
Confidence 2 222221 1233443333 3345566666555 567877653321111 111111244555666665555
Q ss_pred EEEEeCC--------eEEEE-eCCCcccceeeecCC-C-C---CCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcee
Q 001178 980 LLVNHET--------QLAIY-DGSKMECIRQWVPQD-V-L---SSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 980 l~~~~d~--------~i~vw-d~~~~~~~~~~~~~~-~-~---~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
++.+... .+-++ |-.+|..+..-.... + . -..-..+.-.+|..+|+..+ ..+.+.+||..+++..
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 5543210 11110 111222221111100 0 0 00111222245666655554 4588999999999988
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCC-CCCeEEEEecCCcEEEEecCC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQ-EPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~-~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
.++... .++. +|+.... .+.+|++-. |..++|++.+.
T Consensus 425 Q~l~~~-----------epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 425 QTLALS-----------EPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eecccC-----------ccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 887643 2233 3333222 445666665 55688887653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=84.31 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=158.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+.|.++.|.-++.. ++.+..+|.|.+-|..+.... +...-...|.+++||||++.++
T Consensus 67 gd~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~e--------------------ivg~vd~GI~aaswS~Dee~l~ 125 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNS-ICVITALGDIILVDPETLELE--------------------IVGNVDNGISAASWSPDEELLA 125 (1265)
T ss_pred CCcceEEEEEecccce-EEEEecCCcEEEEccccccee--------------------eeeeccCceEEEeecCCCcEEE
Confidence 3469999999999875 666778899999988776543 2344567899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-----ceeEEec-----
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-----RKLFQFE----- 494 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-----~~~~~~~----- 494 (1131)
..+..+++.+.+-.= ..+.. ..+ ...-.+.++ .+++|..+.=.-+. ..| +.+...+
T Consensus 126 liT~~~tll~mT~~f-~~i~E-~~L--------~~d~~~~sk---~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~ 192 (1265)
T KOG1920|consen 126 LITGRQTLLFMTKDF-EPIAE-KPL--------DADDERKSK---FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI 192 (1265)
T ss_pred EEeCCcEEEEEeccc-cchhc-ccc--------ccccccccc---cceecccccceeeecchhhhcccccccccccccch
Confidence 999888887755321 11110 001 111112222 33333222100111 111 1110000
Q ss_pred CCccCeEEEeecccCCccEEEEE-----ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~-----s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
...+.=++++| .+||+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ +..|
T Consensus 193 ~~~~~~~~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~I 268 (1265)
T KOG1920|consen 193 EQDDHKTSISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDI 268 (1265)
T ss_pred hhccCCceEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcE
Confidence 01122234666 5778888873 333899999976 2222222222233468999999999998875443 5578
Q ss_pred EEEeCCCCeeeEEEe--cc-cCCceEEEEEeCCCCEEEE---EEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 570 VEWNESEGALKRTYI--GF-RKKSAGVVQFDTTRNRILA---AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~--~~-~~~~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
.++... |-....|. -. ....+..++|+.++..|++ ......|++|-..+-.........-. ...-+.|+|.
T Consensus 269 vffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~--~~~~~~W~p~ 345 (1265)
T KOG1920|consen 269 VFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS--QKALLMWDPV 345 (1265)
T ss_pred EEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc--ccccccccCC
Confidence 888743 43222221 11 1213788999999998887 44555699999887654332222111 1222788884
Q ss_pred C-CEEEEEECCCcEEEEec
Q 001178 644 G-NLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~-~~l~~~~~dg~i~iw~~ 661 (1131)
. ..+.+-..+|...++++
T Consensus 346 ~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CceeEEEEecCCcEEEEEE
Confidence 3 34444446777666665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=88.83 Aligned_cols=189 Identities=16% Similarity=0.209 Sum_probs=134.4
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~ 954 (1131)
..++|.+++ +++++-|+.+|.|++++.... . .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457777775 478999999999999997633 3 444445543 56799999999999999999888665443
Q ss_pred eeeecCCCCCCCCceEEEEcCC-----CcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec
Q 001178 955 IAIQLPAGKLPVGETRVQFHSD-----QVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d-----~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~ 1029 (1131)
..++ .++.+++++|+ .+.+++|+...+.++.-.-.........+ ...++|.+++|- |.++|-++
T Consensus 109 ~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAWan- 177 (846)
T KOG2066|consen 109 YDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAWAN- 177 (846)
T ss_pred EecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeee-cCccceEEEEec--CcEEEEec-
Confidence 3333 68899999998 45566665544888765432222222222 127899999995 77888887
Q ss_pred CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1030 DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1030 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
|-.|+|||..+++.+..+......+ ....++-.+.|.+. ..|+.|=.| +|+|..+.
T Consensus 178 d~Gv~vyd~~~~~~l~~i~~p~~~~------R~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDGVKVYDTPTRQRLTNIPPPSQSV------RPELFPPHLHWQDE--DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CCCcEEEeccccceeeccCCCCCCC------CcccCCCceEecCC--CeEEEecCC-eEEEEEEe
Confidence 5568999999999999888766333 34466667888773 467666555 59999887
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00024 Score=79.42 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=164.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
|...|.--+++..+++ ++.|+..|.+++|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5667777778888885 89999999999999988876642 1234456677788999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeee--e-ecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc-----eeEEecCCc
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLE--I-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR-----KLFQFEGHE 497 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~-~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~h~ 497 (1131)
.|+..|.|.|+-+..+........ . ..|...|++++|++|+. .+++|...|.|.+-.++.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999998877433222111 1 23678999999999999 7999999999888764332 122333345
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-c-eEEEEEEccC----CCEEEEEeecCCCCceEEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-L-WCTTMLYSAD----GSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~-~v~~~~~s~~----g~~l~~~~~~~~~~~~i~i 571 (1131)
+.|..+... ++..|++... .. .+++.+.......-+... + .-...+|-|. ..-.+.|+ ....++
T Consensus 171 s~IVQlD~~---q~~LLVStl~-r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QSYLLVSTLT-RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cceehHhhhh-hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 566666532 2233333332 22 223333222111000011 1 1223334332 23334443 334566
Q ss_pred EeCC-CCeeeEEEecc-------------cC----------CceEEEE----EeCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 572 WNES-EGALKRTYIGF-------------RK----------KSAGVVQ----FDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 572 wd~~-~~~~~~~~~~~-------------~~----------~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
|... .|..+++..-. .. ..-..+. +.-.+.++++-++-| |+|+|..+...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 6543 24444332100 00 0000010 111223455555545 889998776554
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhh
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAI 671 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 671 (1131)
.-... .+ .|..++. .++-|++-..|+.+++..+.+..+.+..+
T Consensus 320 l~se~-~~--DI~dVs~--~~neiFvL~~d~~l~~~sv~s~qr~l~~l 362 (726)
T KOG3621|consen 320 LWSEG-GH--DILDVSH--CGNEIFVLNLDRGLKVESVASRQRKLESL 362 (726)
T ss_pred EeecC-CC--ceeEEee--cCceEEEEecCCceeEEEeehhHHHHHHH
Confidence 33322 22 4555554 46677777888888888887775554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-05 Score=84.45 Aligned_cols=206 Identities=13% Similarity=0.173 Sum_probs=132.5
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC-eeEEEEccCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRK- 953 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~~Dg~-----v~lwd~~~~~~~~- 953 (1131)
+|++ ++..+|.|+.+|.|.+++ .+-+.+..++++... |..+....+..+|++.+.|+. |++|+++.-+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 778899999999998887 344556778888777 555555555578999988765 8999998753222
Q ss_pred eee------eecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCc--ccceeeecCCCCCCCeEEEEEccCCCEE
Q 001178 954 SIA------IQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKM--ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1131)
Q Consensus 954 ~~~------~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~--~~~~~~~~~~~~~~~v~~i~~s~dg~~l 1024 (1131)
..+ ........+.+++.++.+.+-+.+++|- +|.|..+.-+-. +-.+.-.. +....+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~-~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS-HRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee-ccCCCCceeeEEecCCcee
Confidence 111 1112233457899999999999999984 788888864321 11111111 2227899999999999974
Q ss_pred EEEecCCcEEEEECCCCce-eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1025 YATFTDGSIGVFDADSLRL-RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+.+..-..|.+|.+..... .+.+. +++.+.+ +..|++..+ .+++++.. .|.+|+....+.-|...
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~ln--Css~~~~t~-qfIca~~e-~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLN--CSSFSDGTY-QFICAGSE-FLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec----------cCCccce--eeecCCCCc-cEEEecCc-eEEEEcCCCcceeeeec
Confidence 4444567899999873331 22222 1333333 566666433 35555544 48888887665555443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00087 Score=74.85 Aligned_cols=254 Identities=16% Similarity=0.174 Sum_probs=132.1
Q ss_pred ecCCCcEEEEE--------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 356 HPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 356 spdg~~llasg--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
|||++++|+.- +..+.+.|||+.+++.... ......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence 68888755521 2235789999998765431 1115678889999999999988
Q ss_pred eCCCeEEEEEecCCCccceeeeeec-------C---------cCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCcee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDA-------H---------VGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKL 490 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~-------h---------~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~ 490 (1131)
. ++.|.+++..++...+. +..| - -+.-..+.|||||++ |+.. -++..|+.+. +
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~-----~ 130 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP-----L 130 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE-----E
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE-----e
Confidence 5 57899999877643321 2222 0 112357889999995 4433 2334444333 0
Q ss_pred EEecCCcc---CeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeE-Ee----cCCCceEEEEEEccCCCEEEEEe
Q 001178 491 FQFEGHEA---PVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRV-DY----DAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 491 ~~~~~h~~---~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~-~~----~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
........ .+..+.+ |.+ |..+- .+.++|+.+++... .. ......+..+.|.++++.++..-
T Consensus 131 ~~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 131 PDYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp EEESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred eccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 01111111 1222222 111 11112 35567777665432 21 23455789999999999555444
Q ss_pred ecC-CCCceEEEEeCCCCeeeEEEecccCCce---EEEEEe-CCCCEE-EEEEcCCc--EEEEEcCCCeEEEEEeccCCC
Q 001178 561 TSK-EGDSHLVEWNESEGALKRTYIGFRKKSA---GVVQFD-TTRNRI-LAAGEDNQ--IKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 561 ~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~s-~~~~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
.++ .....+.+.|..++.....+.......+ ....+. +++..+ .....+|- |++++...+... .+.. +.
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~--G~ 279 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS--GD 279 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---SS
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--Cc
Confidence 333 3345677888887766544443333332 234554 666544 44446665 555566655533 2221 11
Q ss_pred CCcc-eEEEcCCCCEEEEE
Q 001178 633 PSLP-RLRFNKEGNLLVVT 650 (1131)
Q Consensus 633 ~~i~-~v~~sp~~~~l~~~ 650 (1131)
-.|. .+.++++++.++..
T Consensus 280 ~~V~~i~~~d~~~~~iyf~ 298 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFT 298 (353)
T ss_dssp S-EEEEEEEECTSSEEEEE
T ss_pred eeecccceEcCCCCEEEEE
Confidence 2453 35667766655433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00038 Score=77.69 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=160.7
Q ss_pred eCCCCEEEEEE---------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchh
Q 001178 597 DTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRA 667 (1131)
Q Consensus 597 s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~ 667 (1131)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46777666532 346799999999776554433 23688999999999998875 578999887665211
Q ss_pred hhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeee
Q 001178 668 LRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELT 747 (1131)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~ 747 (1131)
.-+..+ ... +..|- --|-..
T Consensus 77 ~lT~dg-~~~------------------------------------------------------i~nG~-----~dwvye 96 (353)
T PF00930_consen 77 QLTTDG-EPG------------------------------------------------------IYNGV-----PDWVYE 96 (353)
T ss_dssp ESES---TTT------------------------------------------------------EEESB-------HHHH
T ss_pred Eecccc-cee------------------------------------------------------EEcCc-----cceecc
Confidence 111111 000 00000 001000
Q ss_pred cccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeec-ceeeEEeecCCCC-------------CCCCccceeeec
Q 001178 748 EIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSN-GVQKLWKWNRTEQ-------------NPSGKATAAVAP 813 (1131)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~-------------~~~~~~~~~~~~ 813 (1131)
+. --..-..+-|||||++|+...-| ..+..+.+..-.. ..-|.......+
T Consensus 97 EE----------------v~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l 160 (353)
T PF00930_consen 97 EE----------------VFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSL 160 (353)
T ss_dssp HH----------------TSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEE
T ss_pred cc----------------ccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEE
Confidence 00 01112357788888888877654 4444443322111 112333355567
Q ss_pred eeecCCCCcccccCCC---CCCCCCeeEEEecCCCCEEEEE-e--C-C--eEEEEECCCceeEEEEeC-CCC---CeeEE
Q 001178 814 QHWQPSNGLLMTNDVP---ENAEDVVPCVALSKNDSYVMSA-G--G-G--KVSLFNMMNFKVMTTFMS-PPP---ASTFL 880 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~la~~-~--d-g--~i~vwd~~~~~~~~~~~~-~~~---~i~~l 880 (1131)
.++++.+++......+ ......+..+.|+++++.|+.. . + . .+.++|..++.+...... ... .-...
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~ 240 (353)
T PF00930_consen 161 FVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPP 240 (353)
T ss_dssp EEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEE
T ss_pred EEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccc
Confidence 7888888876544443 2346678899999999944443 2 2 2 377778877655443331 122 23356
Q ss_pred EEe-CCCCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeE-EEEccCCCEEE-EEeCC----CcEEEEEcC-CCc
Q 001178 881 AFH-PQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITG-LAFSTNLNILV-SSGSD----AQLIFWNTD-TWE 950 (1131)
Q Consensus 881 ~~s-~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~-l~~s~dg~~l~-s~~~D----g~v~lwd~~-~~~ 950 (1131)
.|. ++++.+|.....+|.-+||-++ .+. ...+....-.|+. +.++++++.|. ++..+ ..|..-+++ .++
T Consensus 241 ~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~ 319 (353)
T PF00930_consen 241 HFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE 319 (353)
T ss_dssp EE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE
T ss_pred ccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC
Confidence 665 6577777777788876666554 444 3455555566755 77888877654 45442 245555555 322
Q ss_pred eeeeeeeecCCCCCCCCc-eEEEEcCCCcEEEEE
Q 001178 951 KRKSIAIQLPAGKLPVGE-TRVQFHSDQVRLLVN 983 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v-~~v~~s~d~~~l~~~ 983 (1131)
. .++... ... ..+.|||++++++..
T Consensus 320 ~---~~LT~~-----~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 320 P---KCLTCE-----DGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp E---EESSTT-----SSTTEEEEE-TTSSEEEEE
T ss_pred e---EeccCC-----CCCceEEEECCCCCEEEEE
Confidence 2 111111 122 689999999998863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.4e-06 Score=56.90 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
++++.++.+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 468899999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00031 Score=80.23 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=136.6
Q ss_pred EEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-eeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001178 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVD---- 907 (1131)
Q Consensus 839 l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~---- 907 (1131)
-++++.+..++.|+ +|.|.+++- +.+.++.+..+... |+.+.... +..+|++-+.|+ .++||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888899998 898888774 23445667766666 44444443 446777766665 4899998742
Q ss_pred --eeE--Eeecc-----cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 908 --EVK--TKLKG-----HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 908 --~~~--~~~~~-----h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
.++ ..+.. ...++++++.|.+-+.+|.|-.||.|..+.-+--+.+.....-.. ....+|+.+++..|+.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~--~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH--RGKEPITGLALRSDGK 184 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec--cCCCCceeeEEecCCc
Confidence 233 12222 356789999999999999999999999986544332222222222 2237999999999998
Q ss_pred E-EEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 979 R-LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 979 ~-l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
. +.+.+...|.+|.+.... ........+...+.|..|++...-+++++ +..+.+|+.+......++.
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 7 666778899999998433 22222334478899999987655355554 5789999988665555554
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0094 Score=64.15 Aligned_cols=280 Identities=13% Similarity=0.077 Sum_probs=134.9
Q ss_pred EEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 354 DFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
+|.+||++||..+..|| .+.+.|+.+++...- ..+.........++|+++.++......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-------------------Tdg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-------------------TDGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----------------------SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-------------------ccCCCCCccceEEecCCCeEEEEECCC
Confidence 67899998888887776 467778888876531 111112222466789999887776677
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEe--cCCCceEEEEEc---CC-------------------CcEEEEeCCC
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS--YPNKQLCIVTCG---DD-------------------KLIRVWDLSG 487 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s--~d~~~~~l~s~s---~d-------------------~~i~iwd~~~ 487 (1131)
.|+--|+++.+.. .+ +......+-...|. .|+. .++..- .| +.|.--|+..
T Consensus 103 ~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 103 SLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred eEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 8999999886632 33 33344455445664 3455 333221 11 1122223222
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEe---cCC-eEEEEeCCCCceeE-Eec--CCCceEEEEEEccCCCEEEEEe
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDG-KIKAWLYDNVGSRV-DYD--APGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg-~i~~wd~~~~~~~~-~~~--~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.....+..-...+.-+.|+|... ..|+-|- .|. .-|+|-+++..... .+. .....+..=-|.|||..+...+
T Consensus 178 G~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 178 GERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred CceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 23333333444556667766543 3343332 122 13667555433222 111 2334677778999999988765
Q ss_pred e-cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC----------------CcEEEEEcCCCeEE
Q 001178 561 T-SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----------------NQIKFWDMDNVNML 623 (1131)
Q Consensus 561 ~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~ 623 (1131)
. .+..+..|.-+|..+++....... . ...-...++||.+++-=+.| --|+++++..+...
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~~~~~--p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRRLMEM--P-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred ecCCCCceEEEeeCCCCCCceEEEeC--C-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 4 223356788889888865443322 1 23335567888877653332 25677888877654
Q ss_pred EEEecc--------CCCCCcceEEEcCCCCEEEEEEC-CCcEEEEec
Q 001178 624 TSTEAE--------GGLPSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1131)
Q Consensus 624 ~~~~~~--------~~~~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~ 661 (1131)
...... .....-....|+|||+.++..+. .|...||-+
T Consensus 334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 322211 01112357899999998876554 677766654
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0023 Score=74.65 Aligned_cols=242 Identities=12% Similarity=0.136 Sum_probs=141.1
Q ss_pred CEEEEEe-CCeEEEEECCCceeEEEEeCCCCC-----e-eEEEEeCCCCcEEEEEe---------CCCcEEEEEeeccee
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPA-----S-TFLAFHPQDNNIIAIGM---------EDSTIQIYNVRVDEV 909 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~~~~~la~g~---------~dg~I~iwd~~~~~~ 909 (1131)
..++.++ ++.|.-+|.++++.+-++...... + ....+. ++ ++++++ .+|.+.-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4455554 899999999999999887643321 1 122232 23 444554 367889999999987
Q ss_pred EEeeccccc--------------------Ce-eEEEEccCCCEEEEEeCCC------------------cEEEEEcCCCc
Q 001178 910 KTKLKGHQK--------------------HI-TGLAFSTNLNILVSSGSDA------------------QLIFWNTDTWE 950 (1131)
Q Consensus 910 ~~~~~~h~~--------------------~V-~~l~~s~dg~~l~s~~~Dg------------------~v~lwd~~~~~ 950 (1131)
+-....... .| ...++.+.+..++.++.|+ .|.-.|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 766543211 11 1345555566777776665 69999999988
Q ss_pred eeeeeeeecCCCCCCCCceEEEE----cCCCc---EEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC
Q 001178 951 KRKSIAIQLPAGKLPVGETRVQF----HSDQV---RLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~v~~----s~d~~---~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
..-...................+ .-++. .++++ .+|.++..|..+|+.+-..... ...++.+| .
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~--~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------EQPMAYDP--G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------ccccccCC--c
Confidence 76654322110000000000111 12333 34444 5899999999999987765321 11223333 3
Q ss_pred EEEEE------------------ecCCcEEEEECCCCceeeEecCCccccCCCCCCCCcc--ccEEEEEcCCCCCeEEEE
Q 001178 1023 LIYAT------------------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTV--FPLVVTSHPQEPNQLAVG 1082 (1131)
Q Consensus 1023 ~l~s~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~~~p~~~~~l~s~ 1082 (1131)
.++.+ ..+|.+.-.|+.+|+.+-+.......... ...... .++.+ .+.+|+.+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~--~~g~~~~~~~~~~-----~g~~v~~g 412 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSW--NIGFPHWGGSLAT-----AGNLVFAG 412 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccc--ccCCcccCcceEe-----cCCeEEEE
Confidence 33332 23578888999999888777643111000 000000 01112 34688899
Q ss_pred ecCCcEEEEecCCCccccccccC
Q 001178 1083 LTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1083 ~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
+.||.|+.+|..+++..|....+
T Consensus 413 ~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 413 AADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred CCCCeEEEEECCCCceeeEEECC
Confidence 99999999999999999998753
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0031 Score=73.67 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=69.1
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc------eEE--EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL------WCT--TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~------~v~--~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
..++.++.++.+.-.|..+++.+..+..... .+. .+.+. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 4577777889999999888887776544322 000 11111 2255666554 889999999999998777
Q ss_pred ecccCC----ceE-EEEEeCCCCEEEEEE---------cCCcEEEEEcCCCeEEEEEec
Q 001178 584 IGFRKK----SAG-VVQFDTTRNRILAAG---------EDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 584 ~~~~~~----~v~-~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
...... .+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643220 011 12222 24555554 368899999999998877654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00062 Score=76.32 Aligned_cols=284 Identities=15% Similarity=0.104 Sum_probs=157.3
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...+.=-+++..+++++.|++.|.+.+|+-..+ ++..... ++....+....+|++.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~-~~~~~~~~~~~vs~~e 88 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKN-EGATGITCVRSVSSVE 88 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhcccc-cCccceEEEEEecchh
Confidence 4455555677788999999999999998874432 2211111 1234556667888998
Q ss_pred CEEEEEe-CCeEEEEECCCceeE-----EEE-eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc----eeEEeec
Q 001178 846 SYVMSAG-GGKVSLFNMMNFKVM-----TTF-MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLK 914 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~~~-----~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~----~~~~~~~ 914 (1131)
.++|.|+ .|.|.++-+...... ... +.|...|++++|++ ++..+.+|...|.|.+-.+++. .....+-
T Consensus 89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il 167 (726)
T KOG3621|consen 89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEIL 167 (726)
T ss_pred HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceee
Confidence 8888888 688999887653221 111 13678899999999 9999999999999999888772 1112233
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC-CceEEEEcCC----CcEEEEEeCCeEE
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV-GETRVQFHSD----QVRLLVNHETQLA 989 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s~d----~~~l~~~~d~~i~ 989 (1131)
.-.+.|..+... ++..|++...- ..+.+.+.... .++......+ .-...+|-|. ..-.+.+..-..|
T Consensus 168 ~~ds~IVQlD~~-q~~LLVStl~r--~~Lc~tE~eti-----~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~R 239 (726)
T KOG3621|consen 168 SEDSEIVQLDYL-QSYLLVSTLTR--CILCQTEAETI-----TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLR 239 (726)
T ss_pred ccCcceEEeecc-cceehHhhhhh--hheeecchhHH-----HHhcCCCcCCccccceEEeeccccCCCceEEEecCCCc
Confidence 345667777765 33444443332 23444443221 1111111101 1223344333 2233334444567
Q ss_pred EEeCC-Ccccceeeec-------------CCC-------------CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 990 IYDGS-KMECIRQWVP-------------QDV-------------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 990 vwd~~-~~~~~~~~~~-------------~~~-------------~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
+|..+ .|..+++..- +.. +.-....+.+-.++ .+++-++- .|+|+|..+..
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~-Giyv~d~~~~~ 317 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEV-GIYVFDSNNSQ 317 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecc-eEEEEEeccce
Confidence 77665 2433333211 000 00011112222233 34444433 49999998877
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccc
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~ 1099 (1131)
.....+..+ .|. +|+ ..++-|+.-..|+.+++..+.+.+.+
T Consensus 318 v~l~se~~~-----------DI~--dVs---~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 318 VYLWSEGGH-----------DIL--DVS---HCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EEEeecCCC-----------cee--EEe---ecCceEEEEecCCceeEEEeehhHHH
Confidence 776654322 122 233 24566777777888888887665443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00044 Score=77.85 Aligned_cols=223 Identities=12% Similarity=0.143 Sum_probs=119.7
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
......+.++|+|+.+++ +.+|...++.... ......+.....+|.++++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-----------------------------~r~k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-----------------------------WRNKAFGSGLSFVWSSRNR 81 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-----------------------------TEEEEEEE-SEEEE-TSSE
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-----------------------------CcccccCceeEEEEecCcc
Confidence 344678999999998888 6677777775111 0001234445788998766
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 847 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
+.+.-..++|.|+.--+.+....+..+ ..+..+- .|.+|...+.+ .|.+||+.+++.+..+... +|..+.||
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555545788999733233332333322 1233333 26677766554 8999999999999988744 38999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCC------c---eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 927 TNLNILVSSGSDAQLIFWNTDTW------E---KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 927 ~dg~~l~s~~~Dg~v~lwd~~~~------~---~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
++|.+++-.+.+ .+.+++.+.. + ......... ....|.+.+|..| -++.+... +++-+--....
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E----~~~~IkSg~W~~d-~fiYtT~~-~lkYl~~Ge~~ 226 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE----ISERIKSGCWVED-CFIYTTSN-HLKYLVNGETG 226 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE----E-S--SEEEEETT-EEEEE-TT-EEEEEETTEEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE----ecceeEEEEEEcC-EEEEEcCC-eEEEEEcCCcc
Confidence 999999999877 5777776543 0 000011110 0167888999888 44444444 66663322222
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.+..+ ..+++=+.+.+..+.+.....|+.|..+.++.
T Consensus 227 ~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 IIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred eEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 33332 45788888888888899999999999988764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-06 Score=64.15 Aligned_cols=53 Identities=38% Similarity=0.537 Sum_probs=42.8
Q ss_pred cHHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHHHHHHHHHHHHhcCCH
Q 001178 37 NMKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDR 90 (1131)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~Ell~~~~~ 90 (1131)
++..++++|++|+|++|++.++..........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888443322223 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0034 Score=67.41 Aligned_cols=293 Identities=14% Similarity=0.075 Sum_probs=140.1
Q ss_pred eEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 770 VARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 770 i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
...=+|.++|+.|+..++ +|.-.+|-+ |+.+++... +..+.........++++.+.+
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~Q--LTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQ--LTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----SS-B-TTT-EE-TTSSEE
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEE--CccCCCCCccceEEecCCCeE
Confidence 334568899988888776 666555544 334444332 111122222346677888888
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeC-CCCcEEEEEeC----------------------CCcEEEEEe
Q 001178 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP-QDNNIIAIGME----------------------DSTIQIYNV 904 (1131)
Q Consensus 849 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~~~~~la~g~~----------------------dg~I~iwd~ 904 (1131)
+-.. +..|+-.|+.+.+....+..+...+....|.. .|+..++-.-. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7654 67899999999887777776666665555542 24555442211 112455566
Q ss_pred ecceeEEeecccccCeeEEEEccCCCEEEEEeC----CCc-EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 905 RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS----DAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 905 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~----Dg~-v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.+|+....+. -...+..+.|||....++.-+. |.. -+||-+.+........ ........+..=-|.|||..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEEEE-TTSS-
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccccccCCCCE
Confidence 6776544444 3455778999997655555433 332 3677665532211111 11112245666689999998
Q ss_pred EEE-E-----eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC----------------cEEEEE
Q 001178 980 LLV-N-----HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG----------------SIGVFD 1037 (1131)
Q Consensus 980 l~~-~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg----------------~i~vwd 1037 (1131)
+.. + .+..|.-+++.+++....... ..-..+-.++||++++-=+.|. -|++++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~ 326 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD 326 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence 775 2 244577788888765432222 1344566688998776544432 466788
Q ss_pred CCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1038 ADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+..++..... .|...... ..+...+..-...|+|++...|.+....|...||-+.-
T Consensus 327 ~~~~~~~~l~-~h~~sw~v-~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 327 VEAGRFRKLA-RHDTSWKV-LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTTTEEEEEE-E--------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred cccCceeeee-eccCccee-ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 8776643222 22110000 00112223345899997666777777788877775543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0022 Score=71.26 Aligned_cols=251 Identities=16% Similarity=0.222 Sum_probs=133.2
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccc------c------------ccceeecccccc------cceecee
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLV------S------------KPFKIWDMSNCS------MMLQAAI 404 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~------~------------~~~~~~~~~~~~------~~~~~~~ 404 (1131)
.|+.+.|+++... ||+|...|.|.||.+...+... . .+-++-|+.... ...+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999775 8899999999999986654332 0 011223333211 1223335
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeec------CcCCeeEEEEec-----CC-CceEEE
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA------HVGGVNDLAFSY-----PN-KQLCIV 472 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~V~~l~~s~-----d~-~~~~l~ 472 (1131)
+....++|++++.| |=-++|.|+.+|.+.|.|+++...+.. ..+.. ....|+++.|+- |+ ...+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66678999999998 555999999999999999987664432 12222 234688898873 22 124788
Q ss_pred EEcCCCcEEEEe-C-C--CceeEE----ecCCccCeEEEeecccCC-------------------ccEEEEEecCCeEEE
Q 001178 473 TCGDDKLIRVWD-L-S--GRKLFQ----FEGHEAPVYSVCPHQKEN-------------------IHFIFSTAVDGKIKA 525 (1131)
Q Consensus 473 s~s~d~~i~iwd-~-~--~~~~~~----~~~h~~~v~~~~~~~~~~-------------------~~~l~s~s~dg~i~~ 525 (1131)
.|...|.+.+|. . . +..... ...+.++|..+....... -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 888899999997 2 1 222211 224566766665321111 122444555788999
Q ss_pred EeCCCCceeEEecCCCceEEEEEEc-----cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC---CceEEEEEe
Q 001178 526 WLYDNVGSRVDYDAPGLWCTTMLYS-----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFD 597 (1131)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s 597 (1131)
+...+.+...+.......+..+.+- ..+..|++... +|.++++.+..-+.+..+.-... ..+...+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776655544333344445553 24555665554 89999999998888777664321 122335566
Q ss_pred CCCCEEEEE
Q 001178 598 TTRNRILAA 606 (1131)
Q Consensus 598 ~~~~~l~~~ 606 (1131)
++|..++-.
T Consensus 316 ~~Gdi~~~~ 324 (395)
T PF08596_consen 316 RNGDIFYWT 324 (395)
T ss_dssp TTS-EEEE-
T ss_pred CCCCEEEEe
Confidence 666644443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00058 Score=77.60 Aligned_cols=178 Identities=12% Similarity=0.139 Sum_probs=123.2
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
++.++.|..+|.+.+++.+... ...+ .|... ..+|+++++++ ||+|.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~--~~s~~------~~~Gey~asCS~DGkv~ 96 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNF--DHSSS------ILEGEYVASCSDDGKVV 96 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------cccc--ccccc------ccCCceEEEecCCCcEE
Confidence 6678888889999888754311 0000 12211 66899999999 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCC----CCcEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccCCCE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
|..+.+.+...++. ...++.+++++|+ ..+.+++|+..| +.++.-. ..+.-..+..-.|+|.++.|. |++
T Consensus 97 I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~l 172 (846)
T KOG2066|consen 97 IGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNL 172 (846)
T ss_pred EeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcE
Confidence 99988877776654 3467999999993 256788899888 7777533 112122456667899999996 889
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
+|=++.+| |++||+.+.+.................-..+.|.++.+ |+.|=..+|+|..++
T Consensus 173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99998888 89999999776655544333333334456778887765 555655677777766
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00016 Score=82.82 Aligned_cols=182 Identities=8% Similarity=0.090 Sum_probs=129.5
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++..++.|+....+..+|+.+.+..+. ..--.+.|+-++. +++ .+.+|...|+|.+-| .+.+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 456777788888899999988764431 2212223544443 466 799999999999999 88999999999999
Q ss_pred CeEEEeecccCCccEEEEEec---------CCeEEEEeCCCCceeEEecCCCceEEEEEEccC-CCEEEEEeecCCCCce
Q 001178 499 PVYSVCPHQKENIHFIFSTAV---------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD-GSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~ 568 (1131)
.|..+.. .|+.|++++. |..|++||++....+..+..+.++ .-+.|.|. ...+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9998865 4478888874 567899999988777655554443 44566664 345556654 677
Q ss_pred EEEEe---CCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 569 LVEWN---ESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 569 i~iwd---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..+-| +.+...-..+....+..+...+++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88877 33322211222223334888999999999999999999999973
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.7e-05 Score=49.09 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhc
Q 001178 6 RELVFLILQFLDEEKFKESVHRLEQES 32 (1131)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Es 32 (1131)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=69.20 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=80.8
Q ss_pred CCCeeEEEecC-CCCEEEEEe-----CCe----EEEEECCCceeEEE--E-eCCCCCeeEEEEeCCCCcEEEEEeCCCcE
Q 001178 833 EDVVPCVALSK-NDSYVMSAG-----GGK----VSLFNMMNFKVMTT--F-MSPPPASTFLAFHPQDNNIIAIGMEDSTI 899 (1131)
Q Consensus 833 ~~~i~~l~~s~-dg~~la~~~-----dg~----i~vwd~~~~~~~~~--~-~~~~~~i~~l~~s~~~~~~la~g~~dg~I 899 (1131)
+....++.||. +...+.+.. +|. -.+|++...+..+. . -.....+.+++++| +...++.|+.||+|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence 33446777776 333343331 333 56777765543322 1 13567899999999 88889999999999
Q ss_pred EEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.+||...+... +..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998766332 2234456788999999999999999999999998763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0022 Score=72.22 Aligned_cols=221 Identities=17% Similarity=0.194 Sum_probs=120.0
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+..+.++|+|++++++++|...|+.....+....- .-..++|++ .++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G-----~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFG-----SGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEE-----E-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccC-----ceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 34467899999999999999999999996555554432 345688988 555 66676788999973222222222
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
++.. ..+..+-. |..|...+.+ .|.+||+++++....... .++..+.|+++|.+++..++..+.|++
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 3211 12333433 8888877666 799999999775544332 347899999999999998888999987
Q ss_pred CCCc-----------ccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc--eeeEecCCccccCCCCC
Q 001178 993 GSKM-----------ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR--LRCRIAPSAYMSQASPN 1059 (1131)
Q Consensus 993 ~~~~-----------~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~ 1059 (1131)
.... .....+... ...|.+.+|..| -++.+ +.. .++. +-.|+ .++.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED-CFIYT-TSN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCcceEEEcC-----------
Confidence 6533 022222221 457888888766 34444 333 6665 33333 233322
Q ss_pred CCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1060 SSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1060 ~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.+++. +.+.| ..+.+.....|+.|..+.+...+
T Consensus 233 --~~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 --KPLYL--LGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp --S--EE--EEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred --CceEE--EEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 22332 33344 34688888899999988876443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.012 Score=67.89 Aligned_cols=251 Identities=15% Similarity=0.072 Sum_probs=134.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCC----eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...++||||++++++-+..| +++++|+.+|+.+.. . +.. ..-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 3446789999997555544444 599999999976642 1 111 112239999999987
Q ss_pred EEEeCCC-----------eEEEEEecCCCccceeeeeecCcCC--eeEEEEecCCCceEEEEEcC-C-CcEEEEeCCC--
Q 001178 425 GVAFTKH-----------LIHLYTYQGSNDLCQSLEIDAHVGG--VNDLAFSYPNKQLCIVTCGD-D-KLIRVWDLSG-- 487 (1131)
Q Consensus 425 as~~~d~-----------~i~vwd~~~~~~~~~~~~~~~h~~~--V~~l~~s~d~~~~~l~s~s~-d-~~i~iwd~~~-- 487 (1131)
+....+. .|..|.+.++..-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7664333 37777776653221 1233333332 67889999999633323332 2 3577777333
Q ss_pred ---ceeEEecCCccCeEEEeecccCCccEEEEE---ecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEEEE
Q 001178 488 ---RKLFQFEGHEAPVYSVCPHQKENIHFIFST---AVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 488 ---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
.....+......+....-+. ++.+++.. ...+.|...++..... ...+..+...+.-..+...+++|+.
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 23344433333333322221 22333333 2345677777776653 2234444443333333445666665
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE--EE--cCCcEEEEEcCCCeEE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA--AG--EDNQIKFWDMDNVNML 623 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 623 (1131)
... .++...|++++...+...........+.+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 342 SYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 543 4557789999998455555555444445666665566654443 22 2467888899887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00037 Score=77.06 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=89.7
Q ss_pred cccCCCcccceeeeccCCCcEEEEEEecCCCcEEEE-E---cCCCe----EEEEECCCCcccccccceeeccccccccee
Q 001178 330 TWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVV-G---CGDGE----ITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401 (1131)
Q Consensus 330 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llas-g---~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1131)
.++.....-+++..+.-.....++.||-...+.+.+ . +.+|. -.+|++..++....
T Consensus 188 L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv---------------- 251 (545)
T PF11768_consen 188 LLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV---------------- 251 (545)
T ss_pred EEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE----------------
Confidence 333333333444445555666888888644333333 2 22343 45666654432211
Q ss_pred ceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 402 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
..+--.....|.|++++|+.+.|+.|+.||.|++||...+... +..+.-..+.++|+|+|. ++++|+..|.+.
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ 324 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQ 324 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEE
Confidence 1122356788999999999999999999999999999775322 223445678999999999 899999999999
Q ss_pred EEeC
Q 001178 482 VWDL 485 (1131)
Q Consensus 482 iwd~ 485 (1131)
+||.
T Consensus 325 ~FD~ 328 (545)
T PF11768_consen 325 CFDM 328 (545)
T ss_pred EEEe
Confidence 9993
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.9e-05 Score=52.36 Aligned_cols=32 Identities=34% Similarity=0.513 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001178 4 LSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1131)
Q Consensus 4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1131)
.++++.++|+|||...||..|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0057 Score=68.08 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=123.6
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECCCcee-------------------------------------------EEEE
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKV-------------------------------------------MTTF 870 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~-------------------------------------------~~~~ 870 (1131)
.|+.+.|+++..-|+++. .|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 467888988887888877 78888875532111 1112
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe--ecc------cccCeeEEEEcc-----CC---CEEEE
Q 001178 871 MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK--LKG------HQKHITGLAFST-----NL---NILVS 934 (1131)
Q Consensus 871 ~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~--~~~------h~~~V~~l~~s~-----dg---~~l~s 934 (1131)
....++|++++.|. =-++|+|..+|.+.|.|++....+.. +.. ....|+++.|+. |+ -+|++
T Consensus 83 ~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23467899999984 45899999999999999987776654 222 234688898873 33 36888
Q ss_pred EeCCCcEEEEEcCC-Cceeee-eeeecCCCCCCCCceEEE-EcCC---------------------CcEEEEEeCCeEEE
Q 001178 935 SGSDAQLIFWNTDT-WEKRKS-IAIQLPAGKLPVGETRVQ-FHSD---------------------QVRLLVNHETQLAI 990 (1131)
Q Consensus 935 ~~~Dg~v~lwd~~~-~~~~~~-~~~~~~~~~~~~~v~~v~-~s~d---------------------~~~l~~~~d~~i~v 990 (1131)
|...|.+.+|.+.- ...... ...... ......+..+. |+.+ ..++++.++..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999998762 111111 111111 11223444443 3221 22667788999999
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEc-----cCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYS-----CNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s-----~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
+...+.+........ ......+++- ..+..|++-..+|.|++|.+...+.+..+...
T Consensus 240 ~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp E-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred EeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 999988776665422 2233445553 35678888889999999999999998888754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.012 Score=60.59 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=114.9
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.+.+-...++.++|.|+++.++|+....+.|..++. +|+.+..+.-. .+..-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555679999999966889999999999988886 47777665432 3568899999888888877779999999984
Q ss_pred CCce----eeeeeeecCC-CCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCC---ccccee-----eecCCCCCCCeE
Q 001178 948 TWEK----RKSIAIQLPA-GKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQ-----WVPQDVLSSPIS 1013 (1131)
Q Consensus 948 ~~~~----~~~~~~~~~~-~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~-----~~~~~~~~~~v~ 1013 (1131)
.... .....+.... ......+..++|++.+..|++.. ..-..+|.+.. ...+.. +......-..+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 4321 1111111111 12225689999999877766654 44455555543 111111 110111245688
Q ss_pred EEEEccC-CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1014 SAAYSCN-SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1014 ~i~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
++++.|. |.+++...+...|.++| .+|+.+..+........-. ...-.+=.|+|.+ ++++.++ ++-+.+..|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~---~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS---KDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S---S---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc---cccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999986 45666677888999999 6777776665443221110 0111122488888 5555444 455545444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0077 Score=61.97 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=108.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-...++.++|.|++..|+|+....+.|...+.. |+.+...+ +.+ .+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 445799999999988889999999999999974 66665322 333 35688899998888888
Q ss_pred EEeCCCeEEEEEecCCCc-cce----eeee--e-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC----CceeEE-
Q 001178 426 VAFTKHLIHLYTYQGSND-LCQ----SLEI--D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS----GRKLFQ- 492 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~-~~~----~~~~--~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~----~~~~~~- 492 (1131)
+--.++.+.++++..... +.. ...+ . .++..+..++|.+.++. |+.+-...-..|+... ...+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999999844321 111 1111 1 35567999999999884 4445555556666622 222111
Q ss_pred -e------cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------ceEEEEEEccCCCEE
Q 001178 493 -F------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRL 556 (1131)
Q Consensus 493 -~------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l 556 (1131)
. ......+.++++++. .+++++-......|..+|. .++....+.... .....|+|.++|+..
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1 123456788888875 4567777788888888884 444433332222 246789999998766
Q ss_pred EEE
Q 001178 557 FSC 559 (1131)
Q Consensus 557 ~~~ 559 (1131)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.7e-05 Score=87.03 Aligned_cols=206 Identities=14% Similarity=0.198 Sum_probs=132.8
Q ss_pred CCCcEEEEEEecCC-CcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 346 QGSSVVSMDFHPFH-HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg-~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
....+.|++++-+. +.++++|..+|.|-+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 44567777766543 368999999999999887643221 1225668889999999999 6778
Q ss_pred EEEEe----CCCeEEEEEecCCCcc-ceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 424 IGVAF----TKHLIHLYTYQGSNDL-CQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 424 las~~----~d~~i~vwd~~~~~~~-~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
||.|- .|..+.|||+.++-.. .....+.+ -.....+++|..|.+ ++.+|...+.++++|....+.....-.+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 88773 3567999999886211 01111222 344567899998887 7899999999999995444433332233
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEe-CCCCceeEEecCCC-----ceEEEEEEccCCC-EEEEEeecCCCCceEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWL-YDNVGSRVDYDAPG-----LWCTTMLYSADGS-RLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~~-----~~v~~~~~s~~g~-~l~~~~~~~~~~~~i~ 570 (1131)
..+..+.+.|- .+.++++-. ||.|.+|| ..+.+.......+. ..+..++|.|-.. .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 44555555542 224665555 99999999 44443333221121 2488999998643 3444443 277899
Q ss_pred EEeCC
Q 001178 571 EWNES 575 (1131)
Q Consensus 571 iwd~~ 575 (1131)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 99875
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.017 Score=65.01 Aligned_cols=211 Identities=14% Similarity=0.148 Sum_probs=149.1
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC---CCcEEEEEeecce
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---DSTIQIYNVRVDE 908 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~I~iwd~~~~~ 908 (1131)
.....+++++++..+.+.. ++.|.+.|..+.+......... ....++++| ++..+.++.. ++++.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3445788999998666665 6889999988887777765332 678899999 5544444444 6899999999888
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--- 984 (1131)
.+.....-..+ ..++++|+|..+... ..++.|.+.|..+..... .. .............+.++|+|.++.+..
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-VGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-cccccccCCCCceEEECCCCCEEEEEeccC
Confidence 88776544455 899999999965555 478899999977754321 00 000011124557899999999887743
Q ss_pred -CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-CcEEEEECCCCceeeEecCCc
Q 001178 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-GSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 985 -d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
++.+...|..++.....-..... . ....+.++|+|+++.+.... +.+.+-|..+......+....
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred CCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccc
Confidence 25888899888777665222210 2 45678999999999888544 899999999888777665444
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.029 Score=63.48 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=106.0
Q ss_pred EEecCCCCEEEEEeCC------------eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 839 VALSKNDSYVMSAGGG------------KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 839 l~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
++.+|.|-.+|...+. .|+||+... +.+.++.-..+.+.++.|+. +.. |++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4555655555555433 599999865 45555543348999999997 544 44567999999999863
Q ss_pred ce------eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----CCCCceE-EEEcC
Q 001178 907 DE------VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK----LPVGETR-VQFHS 975 (1131)
Q Consensus 907 ~~------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~----~~~~v~~-v~~s~ 975 (1131)
.. .+....-....+....+..+|-.+. ..++.+.+-+-.............+... ....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 32 1111111222233334444553333 3344443332221110000000111100 0011111 23444
Q ss_pred CCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 976 DQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 976 d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
+....+. ..++.+.+.+....+. +. . .+++..|++||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~-~---~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---ID-S---DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---cc-C---CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 3445555444332211 11 1 46899999999999999999999999998776666666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0034 Score=70.59 Aligned_cols=188 Identities=16% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCC---CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGD---GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
....+..-+|+|+++.+....-.. ..+.++|+++++...... ..+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCCCCC
Confidence 556788889999998754443222 359999999987654211 223334568999999
Q ss_pred EEEEEe-CCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE--eCCCceeEEecCCc
Q 001178 423 FIGVAF-TKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW--DLSGRKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw--d~~~~~~~~~~~h~ 497 (1131)
+||.+. .|| .|.++|+.++. +. .+..-.+.-+.-.|+|||+. ++++.+..|.-.|| |..+.....+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~---~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LP---RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ce---ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 888664 455 46667777765 22 23333333347789999997 45555556654554 56666655554333
Q ss_pred cCeEEEeecccCCccEEEEEec-CCe--EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 498 APVYSVCPHQKENIHFIFSTAV-DGK--IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+.-..-.| +++|++++..+. +|. |.+.|+.+... ............-.+.++|+.++..+.
T Consensus 326 ~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 326 GGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 32223333 567777776664 344 55566655553 222223333455678888888877653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.17 Score=59.48 Aligned_cols=109 Identities=10% Similarity=0.056 Sum_probs=65.8
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc-eEE----------EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-WCT----------TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
..++.++.++.|.-.|.++++.+..+..... .+. .+++ .+..++.++. ++.+.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 4666777778888888888877776543211 111 1122 2334555543 789999999999988
Q ss_pred EEEecccCC---ceEE-EEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEec
Q 001178 581 RTYIGFRKK---SAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 581 ~~~~~~~~~---~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1131)
-.+...... .+.+ -.+. +..++++.. +|.|+.+|..+|+.+-....
T Consensus 144 W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 765432110 1111 1111 335555542 68999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0088 Score=67.33 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=114.5
Q ss_pred ecCcCCeeEEEEecCCCceEEEEEcCC--CcEEEEe-CCCce--eEEecCCccCeEEEeecccCCcc-EEEEEecCCeEE
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWD-LSGRK--LFQFEGHEAPVYSVCPHQKENIH-FIFSTAVDGKIK 524 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd-~~~~~--~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~ 524 (1131)
..-...+..-+|+|+++.+..++-... ..+.++| ..++. +..+.++.. .-.|+ +||+ ++++...||...
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~fs--pDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAFS--PDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccCC--CCCCEEEEEECCCCCcc
Confidence 334456777899999996433433333 3588888 44433 333333332 33454 4444 455667777655
Q ss_pred EE--eCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCE
Q 001178 525 AW--LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602 (1131)
Q Consensus 525 ~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 602 (1131)
+| |+....... +......-..-.|+|||++++..+ +..+.-.|++.+...+...+....... -..-.++|||++
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCCCE
Confidence 55 665555322 333333334778999999999987 556667899999887665333322222 226779999998
Q ss_pred EEEEEc-CCc--EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 603 ILAAGE-DNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 603 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
++..+. +|. |.+.++.++.....+.... ....-.|.++++.+...+..
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 888664 344 6667776665444443322 23456777888877665543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.21 Score=58.72 Aligned_cols=148 Identities=9% Similarity=0.112 Sum_probs=88.5
Q ss_pred cEEEEEeecceeEEeecccccCeeE---------EEEccCCC---EEEEEeCCCcEEEEEcCCCceeeeeee--------
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHITG---------LAFSTNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAI-------- 957 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~~---------l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~~~~~~~~-------- 957 (1131)
+|.-.|+++|+.+-.++.....+.. +.+..+|+ .++.+..+|.+.+.|..+++.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5666788888887666542222222 22224666 788999999999999999886421100
Q ss_pred ec--CCCC------------------------C-CCCceEEEEcCCCcEEEEEe--------------------------
Q 001178 958 QL--PAGK------------------------L-PVGETRVQFHSDQVRLLVNH-------------------------- 984 (1131)
Q Consensus 958 ~~--~~~~------------------------~-~~~v~~v~~s~d~~~l~~~~-------------------------- 984 (1131)
.. ..+. . ...-..++++|+..++++..
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 00 0000 0 00011256777666655411
Q ss_pred --------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecC
Q 001178 985 --------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 985 --------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
-+.|.-+|+.+++..-...... +...-.+.-.|.+++.++.||.++.+|.++|+.+.+.+.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~----p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF----PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC----CCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 1347778888887766554321 111111223556777888899999999999999988865
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=64.43 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=104.9
Q ss_pred CeEEEEECCCceeEEEEeCC-CCCeeEEEE---eCC---CCcEEEEEeC----------CCcEEEEEeecc-----eeEE
Q 001178 854 GKVSLFNMMNFKVMTTFMSP-PPASTFLAF---HPQ---DNNIIAIGME----------DSTIQIYNVRVD-----EVKT 911 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~---s~~---~~~~la~g~~----------dg~I~iwd~~~~-----~~~~ 911 (1131)
..|++.|..+.+.+.++.-. ...+.+++. ..+ ...+|++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888898888877766532 334554443 221 1578888864 288999999884 2221
Q ss_pred e-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeE
Q 001178 912 K-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE-KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQL 988 (1131)
Q Consensus 912 ~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i 988 (1131)
. -....++|++++-- +++ |+.+. .+.|.+|++...+ .......... ..+.++... +.++++|+ ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-----~~i~sl~~~--~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-----FYITSLSVF--KNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-----SSEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-----EEEEEEecc--ccEEEEEEcccCE
Confidence 1 12357889998877 444 44433 4689999999877 3322222211 234444443 55888876 5667
Q ss_pred EEEeCCC-cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 989 AIYDGSK-MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 989 ~vwd~~~-~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.++..+. ...+..+.. ......++++.|-+|++.+++++.+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7664432 222222222 1225678999999777899999999999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=69.62 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=105.5
Q ss_pred CCeeEEEecCCCCEEEEEe-------CC--eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC--------
Q 001178 834 DVVPCVALSKNDSYVMSAG-------GG--KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-------- 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 896 (1131)
..+.+.++||||+.++... +. .|.+++.. +.......+ ...+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4677899999999887664 32 46666653 333222222 2488899999 76666665432
Q ss_pred ----CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCCCCCce
Q 001178 897 ----STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF---WNTDTWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 ----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l---wd~~~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
+.+.+.+++.++... ...+.|..+.|||||.+++... ++.|++ -....++........... .....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence 233333444333222 2356799999999999988766 477777 444444422211211111 1213457
Q ss_pred EEEEcCCCcEEEEEeCCe--EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 970 RVQFHSDQVRLLVNHETQ--LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
.+.|..++.+++...++. ++..++. |.....+ .......++.+++-+++ .|+.++.++.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecC-Ccccccc-CCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 899999999765544333 4444444 2222221 22222457777777753 45555555533
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.38 Score=54.56 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=37.4
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.|.+|+.. |+++..+.-.. +.+-.+.|+.+ ..|++...||.++++|+....
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 58888854 66666655433 47888999875 567777899999999987433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.16 Score=57.14 Aligned_cols=243 Identities=15% Similarity=0.177 Sum_probs=153.3
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
....+.+.+++..+.... ...+...+...................+++++.+.+..+....+..|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455688888887666655 334555555522222222222244567788884555777776779999999877766655
Q ss_pred ecccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 987 (1131)
..--. .-..++++++++.+..+.. ++++.+.|-.+.+..... +.+. .+ ..++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~----~vG~--~P-~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI----PVGN--TP-TGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE----ecCC--Cc-ceEEECCCCCeEEEEecCCCe
Confidence 43222 5678999999977666555 678888888876654432 2222 12 8899999999888764 889
Q ss_pred EEEEeCCCcccceeeecC--CCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 988 LAIYDGSKMECIRQWVPQ--DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~--~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
+.+.|........ -... ......-..+.+++||.++.+.... +.+.+.|..++.......... .
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~----------~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG----------S 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc----------c
Confidence 9999977665553 1100 1113455678999999977777644 489999999888766522211 1
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
. .+..+...|.+....+.-+..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 233477778443333333445677776665543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.067 Score=53.84 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=140.6
Q ss_pred CeeEEEecCCCCE-EEEEe-CCe-EEEEECCCceeEEEEeCCCCC--eeEEEEeCCCCcEEEEEeCC-----CcEEEEEe
Q 001178 835 VVPCVALSKNDSY-VMSAG-GGK-VSLFNMMNFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGMED-----STIQIYNV 904 (1131)
Q Consensus 835 ~i~~l~~s~dg~~-la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~I~iwd~ 904 (1131)
....|+|+|--.. ++.+- -|+ ..++|..+.+...++....++ --.=.||| ||.+|...-.| |.|-|||.
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEec
Confidence 3445778776544 44444 355 788999988877776543322 22346999 88888766444 67999998
Q ss_pred ecc-eeEEeecccccCeeEEEEccCCCEEEEEeC------C------------CcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 905 RVD-EVKTKLKGHQKHITGLAFSTNLNILVSSGS------D------------AQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 905 ~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
..+ +.+..+..|.-.--.+.+.+||+.|+.+.. | -.+.+-|..+++...+..+ +...+.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L--p~~l~~ 225 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL--PASLRQ 225 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC--chhhhh
Confidence 854 556778888777788999999999988743 1 1233334333333222211 111122
Q ss_pred CCceEEEEcCCCcEEEEEe------CCeEEEEeCCCcccceeeecCC----CCCCCeEEEEEccCCCEEEEEe-cCCcEE
Q 001178 966 VGETRVQFHSDQVRLLVNH------ETQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATF-TDGSIG 1034 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~------d~~i~vwd~~~~~~~~~~~~~~----~~~~~v~~i~~s~dg~~l~s~~-~dg~i~ 1034 (1131)
..+..++..+||+.++.+. |.--.+=-...++.+.-+.... .....|-+|+...+..+++..+ ..+...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 5678888888888777532 1111111112222222221110 0144677888887777666666 556678
Q ss_pred EEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1035 VFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
+||..+|..+......... .|.- ...-++..+.+|.+.++.-
T Consensus 306 i~da~tG~vv~~a~l~daa--------------Gva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 306 IWDAATGAVVSEAALPDAA--------------GVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred EEEcCCCcEEecccccccc--------------ccee---ccCceEEecCCceEEeccc
Confidence 8999999977544322210 1221 2234667777898888754
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.018 Score=68.68 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCcEEEE-EeCCCcEEEEEeecceeEEeecccccC-eeEEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001178 886 DNNIIAI-GMEDSTIQIYNVRVDEVKTKLKGHQKH-ITGLAFST-----NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ 958 (1131)
Q Consensus 886 ~~~~la~-g~~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~s~-----dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~ 958 (1131)
+..+|.. ......|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.+..+..||..-.... ....+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc
Confidence 4444443 345678999999999999999988754 55554321 1233455667778999998753210 00111
Q ss_pred cCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
...........+++-+.+|...+.+.+|.||+||-- |..-++..+. ...+|..|..+.||+||++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~--lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPG--LGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCC--CCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 111223367788888888887777789999999954 3333333322 278999999999999999876 778888886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00015 Score=79.90 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=106.2
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee--EEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.+.|+++....+..+++.|..+|.|-+-..+..... .....+...+++++|++ |.+.||++-...+.+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 455555554455567888888999988877654433 23445666899999998 556677765444568889999998
Q ss_pred CC--ee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC-eEEEEEeccCCCCCcceEEEcC-CCCEEEE
Q 001178 576 EG--AL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV-NMLTSTEAEGGLPSLPRLRFNK-EGNLLVV 649 (1131)
Q Consensus 576 ~~--~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~ 649 (1131)
++ .+ -..|.+.......++||..+.+.+++|...+.+.++|++.. .....+.. ..+..+...| .+.++++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCCCCceec
Confidence 76 11 12233222335667889888889999999999999998732 22222211 1356677778 6677776
Q ss_pred EECCCcEEEEec
Q 001178 650 TTADQGIKILAN 661 (1131)
Q Consensus 650 ~~~dg~i~iw~~ 661 (1131)
.. ||.|.+||.
T Consensus 214 ~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 214 NS-DGDIAIWDT 224 (783)
T ss_pred cc-cCceeeccc
Confidence 55 999999993
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.17 Score=54.52 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=135.6
Q ss_pred cCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeE
Q 001178 777 NSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKV 856 (1131)
Q Consensus 777 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i 856 (1131)
..++.|+.|.++| +.+++...... ... + .....|..+...++-+.+++-+|+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~---------------------~~~--i--~~~~~I~ql~vl~~~~~llvLsd~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK---------------------PTR--I--LKLSSITQLSVLPELNLLLVLSDGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc---------------------cee--E--eecceEEEEEEecccCEEEEEcCCcc
Confidence 4577888998888 77777611000 000 0 12334899999999999999999999
Q ss_pred EEEECCCceeEEEE--------------eCCCCCeeEEE--EeCCCCcEEEEEeCCCcEEEEEeecc-----eeEEeecc
Q 001178 857 SLFNMMNFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGMEDSTIQIYNVRVD-----EVKTKLKG 915 (1131)
Q Consensus 857 ~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~la~g~~dg~I~iwd~~~~-----~~~~~~~~ 915 (1131)
.++++......... ......+...+ -...+...|+++. ...|.+|..... +....+.
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~- 136 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS- 136 (275)
T ss_pred EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-
Confidence 99998765444311 01122344444 1122445555554 448999888753 3344444
Q ss_pred cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-----CCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 916 HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
-...+.+++|. ++.++.+..++ ..+.|+.++............ .........+.--+++.+|++-++-.+ .
T Consensus 137 lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~-f 212 (275)
T PF00780_consen 137 LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGV-F 212 (275)
T ss_pred cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEE-E
Confidence 34778999998 55777776655 788999875542221111000 000112223333344566665433222 2
Q ss_pred EeCCCcccce-eeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 991 YDGSKMECIR-QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 991 wd~~~~~~~~-~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.+. .|+..+ ..... .....++++. ..||++.+ ++.|.||++.+++++..+....
T Consensus 213 v~~-~G~~~r~~~i~W---~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 213 VNK-NGEPSRKSTIQW---SSAPQSVAYS--SPYLIAFS-SNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EcC-CCCcCcccEEEc---CCchhEEEEE--CCEEEEEC-CCEEEEEECcCCcEEEEEECCC
Confidence 232 344333 22222 4466677774 45888766 4669999999999988876543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.041 Score=58.95 Aligned_cols=185 Identities=15% Similarity=0.085 Sum_probs=110.8
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeCCCCcEEEEEeC-----C----CcEEEE
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGME-----D----STIQIY 902 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~~-----d----g~I~iw 902 (1131)
.++..-.++..|+++ +..+.+++.+++..+..+.. .....+.+...| +|.+.++... . ..-.||
T Consensus 69 ~~~~~~d~~g~Lv~~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 69 SSGALIDAGGRLIAC-EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ccceeecCCCeEEEE-ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 344443344444443 33455666665555333221 224566788888 6776664433 0 112455
Q ss_pred Eee-cceeEEeecccccCeeEEEEccCCCEEEEEeCC-CcEEEEEcCC--CceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 903 NVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 903 d~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-g~v~lwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
.+. .+..+..+..|-..-+.|+||||++.|..+... +.|.-|++.. +............ ......-.++...+|.
T Consensus 147 r~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vDadG~ 225 (307)
T COG3386 147 RVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVDADGN 225 (307)
T ss_pred EEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEeCCCC
Confidence 555 566667777766667889999999887776654 7788887763 2211111111111 1224556778888888
Q ss_pred EEEEEe-C-CeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEe
Q 001178 979 RLLVNH-E-TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATF 1028 (1131)
Q Consensus 979 ~l~~~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~ 1028 (1131)
+.+++. + +.|.+|+.+ |+.+..+..+ ...+++++|- ++.+.|++.+
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLP---VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECC---CCCCccceEeCCCcCEEEEEe
Confidence 876543 3 389999999 8888888776 4678888885 3556665555
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.047 Score=64.39 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=111.3
Q ss_pred CCeeEEEEeCCCCcEEEEEe------CCC--cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC-CcEEEEE
Q 001178 875 PASTFLAFHPQDNNIIAIGM------EDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD-AQLIFWN 945 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~------~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-g~v~lwd 945 (1131)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++.... ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 676666554 244 4444453 23332233333 38889999999988877533 2222222
Q ss_pred cCCCceeeeeeeec--CCCCCCCCceEEEEcCCCcEEEEEeCCeEEE---EeCCCccccee-----eecCCCCCCCeEEE
Q 001178 946 TDTWEKRKSIAIQL--PAGKLPVGETRVQFHSDQVRLLVNHETQLAI---YDGSKMECIRQ-----WVPQDVLSSPISSA 1015 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v---wd~~~~~~~~~-----~~~~~~~~~~v~~i 1015 (1131)
-............. ........+..+.|||||..++...+++|++ -....|. ... +... ....+.++
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~--l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG--LGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc--cCCccccc
Confidence 21111111111100 0001225799999999999999877888887 4444454 111 1111 13346889
Q ss_pred EEccCCCEEEEEecCCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1016 AYSCNSQLIYATFTDGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1016 ~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.|..++.++ ++..++...+|.+.- |.....+... +....+ ..|+-.+ ..+..+..+|.+.+=.-.
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~--------n~~~~v--~~vaa~~---~~iyv~~~~g~~~l~~~~ 568 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSR--------NLSAPV--VAVAASP---STVYVTDARAVLQLPNSD 568 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCC--------CccCce--EEEecCC---ceEEEEcCCceEEecCCC
Confidence 999999955 555555555665431 2221111110 011112 2455444 346666777733322223
Q ss_pred CCccccccccCCC
Q 001178 1095 ETERKWGVAVPVD 1107 (1131)
Q Consensus 1095 ~~~~~w~~~~p~~ 1107 (1131)
.++..|..-.+..
T Consensus 569 ~~~~~W~ev~~l~ 581 (591)
T PRK13616 569 SGDQYWREVPGLM 581 (591)
T ss_pred CCCCCceECcccc
Confidence 3455688765543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.089 Score=53.00 Aligned_cols=239 Identities=12% Similarity=0.140 Sum_probs=134.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCe-EEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
...-..++|+|.-.+-++.+-.-|+ ..++|..+++......- . ...-+-|| =.|||||.+|.
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----------~-~~RHfyGH------Gvfs~dG~~LY 129 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----------Q-EGRHFYGH------GVFSPDGRLLY 129 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----------c-cCceeecc------cccCCCCcEEE
Confidence 3444568888887666666666665 56889887765532100 0 00013345 35999999998
Q ss_pred EEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------------------CCcEEE
Q 001178 426 VAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------------------DKLIRV 482 (1131)
Q Consensus 426 s~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------------------d~~i~i 482 (1131)
..-.| |.|-|||...+ +...-++..|.-.-..+.|.+||+. ++.+.. .-++.+
T Consensus 130 ATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrt--lvvanGGIethpdfgR~~lNldsMePSlvl 205 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRT--LVVANGGIETHPDFGRTELNLDSMEPSLVL 205 (366)
T ss_pred eecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcE--EEEeCCceecccccCccccchhhcCccEEE
Confidence 76443 78999999853 5566678888888889999999994 444421 113445
Q ss_pred Ee-CCCceeEEec----CCccCeEEEeecccCCccEEEEEecCCe-----EEEEeCCCCceeEEecCC-------CceEE
Q 001178 483 WD-LSGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAP-------GLWCT 545 (1131)
Q Consensus 483 wd-~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~-------~~~v~ 545 (1131)
.| .+|..+.+.. .+.-.|..++. ..||..++.+-..|. -.+=-...++....+... ...|-
T Consensus 206 ld~atG~liekh~Lp~~l~~lSiRHld~--g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 206 LDAATGNLIEKHTLPASLRQLSIRHLDI--GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred EeccccchhhhccCchhhhhcceeeeee--CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 55 5565553322 23344555554 233333332221111 000000111111111111 12467
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
+++.+.+..+++..+. ..+...+||..+|..+..-.-. .+.-..+...-+++.+.+|.+.++.
T Consensus 284 siA~n~~~glV~lTSP---~GN~~vi~da~tG~vv~~a~l~-----daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 284 SIAANRRDGLVALTSP---RGNRAVIWDAATGAVVSEAALP-----DAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred heeecccCCeEEEecC---CCCeEEEEEcCCCcEEeccccc-----ccccceeccCceEEecCCceEEecc
Confidence 7888877777766654 2567889999999887554321 1122233445566677778888774
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0023 Score=67.38 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc----------HHHHHHHHhccCHHHHHHHhcccCCcCCcccchhhHHH
Q 001178 6 RELVFLILQFLDEEKFKESVHRLEQESGFFFN----------MKYFEEKALAGEWDEIEKYLSGFTKVDDNRYSMKIFFE 75 (1131)
Q Consensus 6 ~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 75 (1131)
+.+..+|..++...|+.+.+..|-+|||...+ +.++-++|..|+-.-|++.+..-....... ...+.|.
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~-~s~LE~~ 195 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK-SSSLEFK 195 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc-cccHHHH
Confidence 34689999999999999999999999998752 788899999999999999987642211111 2348899
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHHHH
Q 001178 76 IRKQKYLEALDRHDRA--KAVEILVKDLKVFSTFNEELFKEITQ 117 (1131)
Q Consensus 76 i~~~~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1131)
+..+.|++++..|... +|++..|+.++|+.......++.|-.
T Consensus 196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~ 239 (394)
T KOG2817|consen 196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG 239 (394)
T ss_pred HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 9999999999998877 99999999999996544444554443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.25 Score=56.95 Aligned_cols=243 Identities=13% Similarity=0.140 Sum_probs=122.9
Q ss_pred CEEEEEEcCCCCEEEEE-eCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC---------
Q 001178 411 SVSRVAWSPDGNFIGVA-FTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--------- 476 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~--------- 476 (1131)
.+..+++||||+++|.+ +.. .+++++|+++|+.+... +..- ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 45578999999999876 333 36999999998654321 2211 1233999999985 3444322
Q ss_pred -CCcEEEEe-CCCce--eEEecCCccCe--EEEeecccCCccEEEEEecC----CeEEEEeCCCC----ceeEEecCCCc
Q 001178 477 -DKLIRVWD-LSGRK--LFQFEGHEAPV--YSVCPHQKENIHFIFSTAVD----GKIKAWLYDNV----GSRVDYDAPGL 542 (1131)
Q Consensus 477 -d~~i~iwd-~~~~~--~~~~~~h~~~v--~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~----~~~~~~~~~~~ 542 (1131)
...|+.|. -+... ...+....... ..+.. +.++++++..+.. ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 22367777 22221 23344433333 34444 5666776654322 34677777664 12222222222
Q ss_pred eE-EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee---eEEEecccCCceEEEEEeCCCCEEEEE-EcCC--cEEEE
Q 001178 543 WC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAA-GEDN--QIKFW 615 (1131)
Q Consensus 543 ~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~iw 615 (1131)
.+ ..+... +..+...+......+.|...++..... ...+..+.. .+....+...+++|+.. ..++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 23 233333 443333333334467888888877652 223443333 23333334445555554 3333 58889
Q ss_pred EcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE--EC--CCcEEEEecCCC
Q 001178 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT--TA--DQGIKILANADG 664 (1131)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~--~~--dg~i~iw~~~~~ 664 (1131)
++..+.....+..... ..|..+...+++..+... +- -+++..||+.++
T Consensus 355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 9984555555554432 234555555555544333 22 246777777766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.44 Score=50.80 Aligned_cols=159 Identities=11% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEc-CCCc
Q 001178 872 SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT-DTWE 950 (1131)
Q Consensus 872 ~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~-~~~~ 950 (1131)
...+.+..+..++ ++++++++..-....-|+--...-...-+.-...|.+|.|+|++.+.+.+ ..|.|++=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 4456788888898 89999887655555566643211122223345789999999998776654 7888887762 2211
Q ss_pred eeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 951 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
.-.. .. .+.....-.+..+++.+++...+++..|.+. ...+.|+.-+.-..........+.|.|.++.+-++.| .+
T Consensus 220 ~w~~-~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~ 295 (302)
T PF14870_consen 220 TWSE-PI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QD 295 (302)
T ss_dssp EE----B--TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--ST
T ss_pred cccc-cc-CCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CC
Confidence 1111 11 1111222457899999999999988888554 4556666555544333335678999998776666655 58
Q ss_pred CcEEEE
Q 001178 1031 GSIGVF 1036 (1131)
Q Consensus 1031 g~i~vw 1036 (1131)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 888766
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.17 Score=56.32 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred EEEecCCCCEEEEEeCCeEEE----EECC-----CceeEEEEe----CC-CCCeeEEEEeCC----------CCcEEEEE
Q 001178 838 CVALSKNDSYVMSAGGGKVSL----FNMM-----NFKVMTTFM----SP-PPASTFLAFHPQ----------DNNIIAIG 893 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~dg~i~v----wd~~-----~~~~~~~~~----~~-~~~i~~l~~s~~----------~~~~la~g 893 (1131)
.++.+|++++||.+....+.+ |+.. .+....... .. ...|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 578899999999998655333 5331 122222221 11 146777766441 46889999
Q ss_pred eCCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 894 MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 894 ~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
..+|.|++|.- +|.++..-.-|..+|..+..-
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999984 666665555677777777764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.17 Score=54.35 Aligned_cols=222 Identities=17% Similarity=0.084 Sum_probs=131.7
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.|.|++..++.+--..+.|.-|+..+++... + .+.+.+.++..-.++..|+++.. -+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~-~~p~~~~~~~~~d~~g~Lv~~~~--g~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------F-PSPGGFSSGALIDAGGRLIACEH--GV 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------E-ECCCCcccceeecCCCeEEEEcc--cc
Confidence 4677777777777778899999998775432 1 12233455555555555655533 36
Q ss_pred EEEEecCCCccceeeee-ecC-cCCeeEEEEecCCCceEEEEEcC-----------CCcEEEEeCCCceeEEecCCccCe
Q 001178 434 HLYTYQGSNDLCQSLEI-DAH-VGGVNDLAFSYPNKQLCIVTCGD-----------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~-~~h-~~~V~~l~~s~d~~~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
.+++.+++......... .+. ...-+.+...|+|. +.++... -|.++..|..+..+..+..+-..-
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 77777655532222111 122 23567889999998 3333222 123444444566767676666677
Q ss_pred EEEeecccCCccEEEEE-ecCCeEEEEeCCC-----Cce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 501 YSVCPHQKENIHFIFST-AVDGKIKAWLYDN-----VGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~-----~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
+.++|+|+ ++.++.+ +..+.|.-|+++. ... ...+....+..-.++...+|.+-+++.. +.+.|..|
T Consensus 166 NGla~SpD--g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~ 240 (307)
T COG3386 166 NGLAFSPD--GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRF 240 (307)
T ss_pred CceEECCC--CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEE
Confidence 88999664 4455554 5568888887762 111 1222223344556778888887754432 13489999
Q ss_pred eCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEE
Q 001178 573 NESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAG 607 (1131)
Q Consensus 573 d~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1131)
+.. |+++..+..... .+++++|- ++.+.|++.+
T Consensus 241 ~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 988 888888887543 56667764 4445555444
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.082 Score=58.33 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=101.1
Q ss_pred eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE---EEEcCC----CCEEEEEeC----------CCeE
Q 001178 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR---VAWSPD----GNFIGVAFT----------KHLI 433 (1131)
Q Consensus 371 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~---~~~spd----g~~las~~~----------d~~i 433 (1131)
.|+|.|..+.+.+....+ .. ...+.+ +.|..+ ..+|++|+. .|.|
T Consensus 3 ~i~l~d~~~~~~~~~~~l-----------------~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFEL-----------------EP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp EEEEEETTTSSEEEEEEE-----------------ET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred EEEEEeCCCCeEEEEEEC-----------------CC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEE
Confidence 578888877776643222 11 223443 334433 467887743 2889
Q ss_pred EEEEecCC----CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEEeec
Q 001178 434 HLYTYQGS----NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPH 506 (1131)
Q Consensus 434 ~vwd~~~~----~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~~~~ 506 (1131)
.++++... ..+..... ....++|++++-. .+. ++++.+ +.|.+|+ ...+.+..... ....+.++...
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred EEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEeec--CEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 99999884 22333322 3357889999877 343 344443 7899999 44441332222 23356666543
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCce-eE--EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGS-RV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+++++.|...+.+.++.++.... .. .......+++++.|-++++.++.+.. +|.+.++...
T Consensus 139 ----~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 139 ----KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp ----TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred ----ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 25899998888888886654333 22 22334557899999877776666643 7888887654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.16 Score=60.79 Aligned_cols=93 Identities=10% Similarity=0.139 Sum_probs=65.4
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC-------CCEEEEEEcCCcEEEEEcCCCe--EEEE-EeccCCCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT-------RNRILAAGEDNQIKFWDMDNVN--MLTS-TEAEGGLPS 634 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~~~~ 634 (1131)
....|+-.|+..|+.+..+..+...++. .+.|+ ....+.|-.++.+..||.+-.. ++.. .........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 3678999999999999999987764444 34443 2345677788899999988632 2211 111122235
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..|++-+.+| ++|+|+.+|.||+||
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd 604 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYD 604 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeec
Confidence 6777777766 689999999999998
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.04 Score=60.25 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=102.7
Q ss_pred CcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI--L-----VSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~--l-----~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+.++.++.....++-.|++.|+.+..++-|.. |+-+.+.|+.+. | +.|=.|..|.-||..-...-.....+.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34555666667788899999999999998877 888888887532 2 234457789999987432211111222
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
..-.......+.+-..+|..++.+.+|.||+||- .+..-++..+.. ..+|..+..+.||++|++.+ +.++.+.+..
T Consensus 425 kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL--GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc--CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2222224566777777887666677999999998 555555444332 78999999999999998776 7777777754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.3 Score=52.59 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=124.2
Q ss_pred cCCCCEEEEEeCCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-------
Q 001178 842 SKNDSYVMSAGGGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL------- 913 (1131)
Q Consensus 842 s~dg~~la~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~------- 913 (1131)
...++.|+.|.++.|.++++.. ........ ...|..+...| .-+.+++- .|+.++++++..-......
T Consensus 4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred ccCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3567888888854499999933 33333332 23399999999 44444433 3599999998764333210
Q ss_pred -------cccccCeeEEE--EccCCCEEEEEeCCCcEEEEEcCCCcee---eeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 914 -------KGHQKHITGLA--FSTNLNILVSSGSDAQLIFWNTDTWEKR---KSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 914 -------~~h~~~V~~l~--~s~dg~~l~s~~~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
......+...+ -...+...+.+...+.|.+|........ ....+.. +..+..++|. +..++
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKIC 152 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEE
Confidence 11222344444 1123333344444558888888763211 1112222 2678888888 66788
Q ss_pred EEeCCeEEEEeCCCcccceeeecCCC---------CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee--EecCC
Q 001178 982 VNHETQLAIYDGSKMECIRQWVPQDV---------LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC--RIAPS 1050 (1131)
Q Consensus 982 ~~~d~~i~vwd~~~~~~~~~~~~~~~---------~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~ 1050 (1131)
++..+...+.|+.++.....+..... ...++..+... ++.+|++- |..-...|. .|+... .+.-
T Consensus 153 v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W- 227 (275)
T PF00780_consen 153 VGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW- 227 (275)
T ss_pred EEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-
Confidence 88888899999997766544422211 12344444443 56777763 333333343 344322 1111
Q ss_pred ccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1051 AYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1051 ~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
. . .+..+.+.. + +|+..+. +.|-||++.+++-
T Consensus 228 ~---------~---~p~~~~~~~--p-yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 228 S---------S---APQSVAYSS--P-YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred C---------C---chhEEEEEC--C-EEEEECC-CEEEEEECcCCcE
Confidence 0 1 122344433 2 5655555 5599999999863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.68 Score=51.59 Aligned_cols=84 Identities=12% Similarity=0.207 Sum_probs=61.0
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC----------------C-E-
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR----------------N-R- 602 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~----------------~-~- 602 (1131)
...+.++..+|++++.++. |.-|+|.++|+.++..++..+|..+..+.-+.....+ . +
T Consensus 307 ~R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3467899999998877775 3489999999999999999988876544433222211 1 2
Q ss_pred EEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 603 ILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
++-+-.-|.|.||++.+|..+..+..
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEEe
Confidence 22356789999999999988777654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0028 Score=43.55 Aligned_cols=39 Identities=33% Similarity=0.609 Sum_probs=34.5
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEE
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.06 Score=63.87 Aligned_cols=226 Identities=9% Similarity=0.054 Sum_probs=114.7
Q ss_pred eEEEEECCCceeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeE--EeecccccCeeEEEE
Q 001178 855 KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVK--TKLKGHQKHITGLAF 925 (1131)
Q Consensus 855 ~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~--~~~~~h~~~V~~l~~ 925 (1131)
.+..||..+.+-...-.-+.... .+++. - ++.++++|+.+ ..+..||..+.+-. ..+........ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EE
Confidence 46678877654322111111111 22233 2 67788888854 34778887765422 22221111112 22
Q ss_pred ccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C--------------
Q 001178 926 STNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-------------- 985 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-------------- 985 (1131)
.-+|+..+.||.++ .+..||..+.+-........+.. ....+ .-+|+..+.|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----cccEE--EECCEEEEEeCCCcccccccccccccc
Confidence 33678888888764 47889988754322222111111 11112 22566555543 2
Q ss_pred ---------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC------CcEEEEECCC-CceeeEecC
Q 001178 986 ---------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD------GSIGVFDADS-LRLRCRIAP 1049 (1131)
Q Consensus 986 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d------g~i~vwd~~~-~~~~~~~~~ 1049 (1131)
..+..||..+.+-...-... .......+..-+|++.+.|+.+ ..+..||.++ .+-. .+..
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~---~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~-~~~~ 498 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFW---TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE-LITT 498 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCC---cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCee-Eccc
Confidence 24778888765432211111 1111112223467777777754 2467899887 3322 2221
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC--cEEEEecCCCccccccccCCCC
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG--SVKVIEPSETERKWGVAVPVDN 1108 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg--~v~iW~~~~~~~~w~~~~p~~~ 1108 (1131)
++... ....+.+. ++.+.++||.|| ++-.||+.+.+ |...+|--.
T Consensus 499 ---m~~~r-----~~~~~~~~----~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~ 545 (557)
T PHA02713 499 ---TESRL-----SALHTILH----DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHS 545 (557)
T ss_pred ---cCccc-----ccceeEEE----CCEEEEEeeecceeehhhcCccccc--ccchhhhcC
Confidence 11110 01111222 678999999999 77788888777 998887653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.33 Score=49.76 Aligned_cols=203 Identities=14% Similarity=0.173 Sum_probs=119.4
Q ss_pred CCCeeEEEecCCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
......+.|..+|.++-+.+ -| .|+.+|+.+++......-+.. ---.++.. ++++....-.++...+||..+-+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 33455788878888777776 34 599999999998877654332 22344554 45666677788999999999998
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeE
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL 988 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i 988 (1131)
.+..+.- .+.=+.++ .|++.|+.......+.++|.++.+.....
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i--------------------------------- 165 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI--------------------------------- 165 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE---------------------------------
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEE---------------------------------
Confidence 8888763 35667777 46777777766778999998874432221
Q ss_pred EEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCC--CCCCcccc
Q 001178 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASP--NSSQTVFP 1066 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 1066 (1131)
.|.+ .+..+ ..++.+-+- +|...|=.=....|...|..+|+....+......+.... .......+
T Consensus 166 ~V~~--~g~pv----------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 166 QVTD--NGRPV----------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp E-EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred EEEE--CCEEC----------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCe
Confidence 1111 11111 234444443 555555555667788888888888887765443321100 00011222
Q ss_pred E-EEEEcCCCCCeEEEEecCC
Q 001178 1067 L-VVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1067 ~-~v~~~p~~~~~l~s~~~Dg 1086 (1131)
+ .|+|.|..+.+++||=.=-
T Consensus 233 LNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp EEEEEEETTTTEEEEEETT-S
T ss_pred eEeEeEeCCCCEEEEEeCCCC
Confidence 2 5999998888888875433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0055 Score=68.17 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=77.1
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~ 953 (1131)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88999999999999999988 677788887888888 99999999999999999999999999987655
Q ss_pred eeeeecCCCCCCCCceEEEEcC
Q 001178 954 SIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
..... ....+..+.|++
T Consensus 99 ~~~~s-----~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VETDISKGIWDR 115 (665)
T ss_pred ccccc-----cccchheeeccc
Confidence 43211 125667777763
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.5 Score=48.31 Aligned_cols=113 Identities=24% Similarity=0.263 Sum_probs=60.1
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC----CCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----GNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~l 424 (1131)
..++|+|.|||+ +++ +...|.|++++ ..+.... .+ -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 468999999997 555 45699999999 4444311 00 000 0134455678999999995 4444
Q ss_pred EEEeCC--------CeEEEEEecCCC-ccc---ee-eeeec---CcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 425 GVAFTK--------HLIHLYTYQGSN-DLC---QS-LEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 425 as~~~d--------~~i~vwd~~~~~-~~~---~~-~~~~~---h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
++.+.. ..|.-|.+..+. .+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 433321 245556665441 111 11 11121 233457799999996 555555443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.7 Score=48.60 Aligned_cols=285 Identities=12% Similarity=0.114 Sum_probs=151.7
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec-----CCCCEEEEEeC
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS-----KNDSYVMSAGG 853 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s-----~dg~~la~~~d 853 (1131)
...+++|+-.|.++||+.......+..-.. .. .-..+|..+..- .+...||+-.-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lll----------------E~----~l~~PILqv~~G~F~s~~~~~~LaVLhP 96 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLL----------------ET----QLKDPILQVECGKFVSGSEDLQLAVLHP 96 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEE----------------EE----ecCCcEEEEEeccccCCCCcceEEEecC
Confidence 467889999999999987554433321111 11 234555555542 13446666667
Q ss_pred CeEEEEECCC--ce-------eEEEEeCCCCC--eeEEEEeC----CCCcEEEEEeCCCcEEEEEeecceeEEeeccccc
Q 001178 854 GKVSLFNMMN--FK-------VMTTFMSPPPA--STFLAFHP----QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 854 g~i~vwd~~~--~~-------~~~~~~~~~~~--i~~l~~s~----~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
.++.||.+.. +. .+..+..|.-. ...+++-| .+..+|.+-+-||.+.+|+-+.-.....+.+ .-
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 7888887631 11 12222223222 22233322 1357899999999999999765544444443 22
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------------eeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------------------KSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~-------------------~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
--..+.|.+.-..+++++.+..+.-|....-... .........+...-.+..+.++.....
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~ 255 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD 255 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce
Confidence 2344788888888999999888888865321000 000001111111112333334333344
Q ss_pred EEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc----cCCC---EEEEEecCCcEEEEECCCCceeeEecCCcc
Q 001178 980 LLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS----CNSQ---LIYATFTDGSIGVFDADSLRLRCRIAPSAY 1052 (1131)
Q Consensus 980 l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s----~dg~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1052 (1131)
+++-....+.+.+.. |......+-. -.+.....|. .++. .+++++.++.+.||.=.+..-.+++.
T Consensus 256 IvvLger~Lf~l~~~-G~l~~~krLd---~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~---- 327 (418)
T PF14727_consen 256 IVVLGERSLFCLKDN-GSLRFQKRLD---YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP---- 327 (418)
T ss_pred EEEEecceEEEEcCC-CeEEEEEecC---CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC----
Confidence 444455566665553 3332222221 1122111121 2322 57788889999999744333333321
Q ss_pred ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccc
Q 001178 1053 MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWG 1101 (1131)
Q Consensus 1053 ~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~ 1101 (1131)
..+| .+.++..+.-+..+++-+.+|.+.+-=+-+++..-.
T Consensus 328 --------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 328 --------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred --------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCcccc
Confidence 1112 234554454567999999999998877766665443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.12 Score=44.79 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred EEEEEEec---CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 350 VVSMDFHP---FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 350 V~~~~fsp---dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
|+++++.. ||..-|++|+.|..|+||+=.. .+. --...+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~--------------------Ei~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA--------------------EITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE--------------------EEecccceEEEEEcCC-CEEEE
Confidence 56666654 6656688999999999998542 221 1123567888887776 56888
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec---CCCceEEEEEcCCCcEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY---PNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~---d~~~~~l~s~s~d~~i~ 481 (1131)
+..+|+|-+|+-... +.. ... ...+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R--lWR---iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR--LWR---IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce--eee---ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999986431 221 221 22366665543 3433 577877777653
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.01 Score=66.20 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=77.2
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCee-EEEEeCCCCcEEEEEeCCCcEEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST-FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~ 910 (1131)
...+..+.|+|.-..+|.+. +|.|.+..+. .+.+.++..|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 55678899999999999998 8999999988 888888887777777 999999 8999999999999999999998766
Q ss_pred Eee-cccccCeeEEEEc
Q 001178 911 TKL-KGHQKHITGLAFS 926 (1131)
Q Consensus 911 ~~~-~~h~~~V~~l~~s 926 (1131)
... ..-..+|+++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2234567777775
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.78 Score=48.20 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=90.3
Q ss_pred CeeEEEEeCCCCcEEEEEe-CCCcEEEEEeecceeEEe-ecccccCeeEEEEccCCCEEEEEeCCCcEEEEE-cCCCcee
Q 001178 876 ASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTK-LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN-TDTWEKR 952 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd-~~~~~~~ 952 (1131)
.+.+.++++ ++..+|... .++.-.||-...+..... +.+ ..++...|++++...+....+...+++. ...++.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 688999999 666555444 333334444333332222 233 3788999999988877777777777774 223222
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCC---Cc---ccceeeecCCCCCCCeEEEEEccCCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGS---KM---ECIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~---~~---~~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
........... ..|..+.+||||..++.-. ++.|.+--+. .+ ...............+++++|.+++.
T Consensus 101 ~~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 12222222211 2799999999999999743 6777776543 23 11111111111246899999999999
Q ss_pred EEEEEecCCc
Q 001178 1023 LIYATFTDGS 1032 (1131)
Q Consensus 1023 ~l~s~~~dg~ 1032 (1131)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8887775443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.5 Score=48.28 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=92.5
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEE-EEeecceeE-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQI-YNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~i-wd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
...+..+.+.| ++.+++++ ..|.+.. ++ ..++.- .....-...++++.+.++++.++. +..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 45688899999 77777655 4555442 22 222211 122233467899999999887665 4567654323333321
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
-.. ...+.......+..+.+.+++..++++.+|.+. ...+.++...............+.+.|..+++.+++| ..|
T Consensus 248 W~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G 323 (334)
T PRK13684 248 WSK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRG 323 (334)
T ss_pred ccc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCc
Confidence 111 111111122456788999999988888888665 3455555544433211113468888888888777765 488
Q ss_pred cEEEEEC
Q 001178 1032 SIGVFDA 1038 (1131)
Q Consensus 1032 ~i~vwd~ 1038 (1131)
.|..|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8888763
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.48 Score=49.79 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=90.8
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE-eeccee-
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN-VRVDEV- 909 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd-~~~~~~- 909 (1131)
..+.+.++|+||+.+|... ++.-.||-...+....... ....++...|++ ++.+.+....+...+++. ..+++.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3678999999999888766 5443444333333333322 234788889999 677777777777777774 233322
Q ss_pred -EEe-ecccccCeeEEEEccCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 910 -KTK-LKGHQKHITGLAFSTNLNILVSSG---SDAQLIFWNTDTWEKR----KSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 910 -~~~-~~~h~~~V~~l~~s~dg~~l~s~~---~Dg~v~lwd~~~~~~~----~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
+.. ...-.+.|+++.+||||..+|... .++.|.+=-+...... ......... .....+..++|.+++.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecCCCEEE
Confidence 111 111122899999999999887765 3567777655432221 111111111 112678899999999988
Q ss_pred EEEe
Q 001178 981 LVNH 984 (1131)
Q Consensus 981 ~~~~ 984 (1131)
+.+.
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 8753
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=3.6 Score=50.27 Aligned_cols=243 Identities=9% Similarity=0.044 Sum_probs=117.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----Cc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KL 479 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~ 479 (1131)
-.+..+.|||||++||.+... ..|++.|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 357788999999999877432 3688999988764321 1221 1 156999999985 34443322 35
Q ss_pred EEEEe-CCC--ceeEEecCCccCeEEEeecccCCccEEEEEe---cCCeEEEEeCCC--CceeEEecCCCceEEEEEEcc
Q 001178 480 IRVWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDN--VGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 480 i~iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
|+.|+ -++ +-...+........ +....+.++.+++..+ .++.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~- 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H- 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-
Confidence 66677 444 22223333233333 2222233555555443 345788888532 222222222222222222 2
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEecc-cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEec
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEA 628 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~ 628 (1131)
.+..+...+........|...++.. ++. ..+..+ ....+..+.+. .+..+++...+|.-+++-+.. +..+..+..
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 2344444432222344566666652 332 333333 33367777776 234555566677655554432 223333331
Q ss_pred cCCCCCcceEEEc--CCCC-EEEEEEC---CCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFN--KEGN-LLVVTTA---DQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~s--p~~~-~l~~~~~---dg~i~iw~~~~~ 664 (1131)
... ..+..+.++ +++. ++++.+. -+.+..+|..++
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 111 012222333 3333 3333332 356777776654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.19 Score=43.69 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=66.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC
Q 001178 412 VSRVAWSP---DG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1131)
Q Consensus 412 V~~~~~sp---dg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 487 (1131)
|++|++.. || +.|++|+.|..|++|+-+. .+ .++. -...|++++-...++ ++.+-.+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~---~Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IV---AEIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EE---EEEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeCcc
Confidence 66777665 33 4899999999999998543 22 2333 345688888777754 89999999999998533
Q ss_pred ceeEEecCCccCeEEEee-cccCCc-cEEEEEecCCeEE
Q 001178 488 RKLFQFEGHEAPVYSVCP-HQKENI-HFIFSTAVDGKIK 524 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~-~~~~~~-~~l~s~s~dg~i~ 524 (1131)
+. ...+.... +.++++ ....+| .-|++|-.+|.|-
T Consensus 73 Rl-WRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RL-WRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-eeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 33332222 555543 333333 3577887788764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.7 Score=47.92 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=116.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCcee---EEEEe----CCCCCeeEEEEeCC---CCcEEEEEeCC--------
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGMED-------- 896 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~la~g~~d-------- 896 (1131)
..+.|+|.|||+++++-..|.|++++ .++.. +..+. ........++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999988877789999999 44443 22221 23346789999993 24544444422
Q ss_pred CcEEEEEeecc-------eeE-Eeecc---cccCeeEEEEccCCCEEEEEeCCCc-------------EEEEEcCCCcee
Q 001178 897 STIQIYNVRVD-------EVK-TKLKG---HQKHITGLAFSTNLNILVSSGSDAQ-------------LIFWNTDTWEKR 952 (1131)
Q Consensus 897 g~I~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg~-------------v~lwd~~~~~~~ 952 (1131)
..|.-|....+ +.+ ..+.. ....-..|+|.|||.+.++.+..+. |.-.+... ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444433 111 12222 2223466999999988777765432 22222221 000
Q ss_pred eeeeeecCCCCC-------CCCceEEEEcCC-CcEEEE--EeCCeEEEEeCCCcccc----------------e------
Q 001178 953 KSIAIQLPAGKL-------PVGETRVQFHSD-QVRLLV--NHETQLAIYDGSKMECI----------------R------ 1000 (1131)
Q Consensus 953 ~~~~~~~~~~~~-------~~~v~~v~~s~d-~~~l~~--~~d~~i~vwd~~~~~~~----------------~------ 1000 (1131)
...+..-..... -.....++|.|. |.+.++ +.+..=.|.-+..|.-. .
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 000000000000 023457899999 666655 22332222222221100 0
Q ss_pred ----eeecCCCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 1001 ----QWVPQDVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 1001 ----~~~~~~~~~~~v~~i~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
-... ..+...+..+.|-. .|.++++.-..+.|....+..+.......... ..-.-.++.+
T Consensus 241 ~~~~P~~~-~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~r~~~v 311 (331)
T PF07995_consen 241 GFVPPVFA-YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--------GGFGGRPRDV 311 (331)
T ss_dssp TS---SEE-ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--------TTSSS-EEEE
T ss_pred CcCcccee-ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--------ccCCCCceEE
Confidence 0000 01135677777764 44566655556677777776443322221111 0111235578
Q ss_pred EEcCCCCCeEEEEecCCcEE
Q 001178 1070 TSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
.+.| |+.++++...+|.|.
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 8888 677888888888763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.097 Score=57.36 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=98.1
Q ss_pred CCCEE-EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEE-----EEEcCCCcEEEEe--CCCc-ee
Q 001178 420 DGNFI-GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI-----VTCGDDKLIRVWD--LSGR-KL 490 (1131)
Q Consensus 420 dg~~l-as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l-----~s~s~d~~i~iwd--~~~~-~~ 490 (1131)
+.++| .++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+.-.+ +.|-.|+.|.-|| ..+. .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 44444 344555678888999998665 4555555 888888887642112 3355688899999 5555 33
Q ss_pred EEecCCc----cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 491 FQFEGHE----APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~----~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
..-.+|+ ..-.|.+- ..+ .+|+.||.+|.|++||--.......+.+-+.+|..+..+.||++++..+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 3333332 23344443 344 4899999999999999755555567788888999999999999998876 6
Q ss_pred ceEEEEeC
Q 001178 567 SHLVEWNE 574 (1131)
Q Consensus 567 ~~i~iwd~ 574 (1131)
..+.+.+.
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 67777764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.74 Score=50.41 Aligned_cols=237 Identities=13% Similarity=0.092 Sum_probs=108.6
Q ss_pred CCceEEEee-ecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe---C
Q 001178 778 SGIGILALW-SNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG---G 853 (1131)
Q Consensus 778 ~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~---d 853 (1131)
+.++|++.+ ..+.|.+.|+.+....|.-..+... ..+... ..-.....+.--|+|+.++++- +
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k----~g~s~PHT~Hclp~G~imIS~lGd~~ 152 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK----TGLSRPHTVHCLPDGRIMISALGDAD 152 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH----H-EEEEEEEEE-SS--EEEEEEEETT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh----cCCCCCceeeecCCccEEEEeccCCC
Confidence 456677766 4688888888765444332211100 000000 0001122233347898888762 2
Q ss_pred ----CeEEEEECCCceeEEEEeCCCC---CeeEEEEeCCCCcEEEEEeC--------------------CCcEEEEEeec
Q 001178 854 ----GKVSLFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGME--------------------DSTIQIYNVRV 906 (1131)
Q Consensus 854 ----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~--------------------dg~I~iwd~~~ 906 (1131)
|.+.++|-++.+.+........ .-..+-|.| ..+.+++... ..++.+||+.+
T Consensus 153 G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 153 GNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp S-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred CCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 4599999999888887764322 244566777 6666766542 34699999999
Q ss_pred ceeEEeecccc--cCeeEEEEccC--CCE-EEEEeCCCcEEEEEc-CCCceeeeeeeecCCCCC---------------C
Q 001178 907 DEVKTKLKGHQ--KHITGLAFSTN--LNI-LVSSGSDAQLIFWNT-DTWEKRKSIAIQLPAGKL---------------P 965 (1131)
Q Consensus 907 ~~~~~~~~~h~--~~V~~l~~s~d--g~~-l~s~~~Dg~v~lwd~-~~~~~~~~~~~~~~~~~~---------------~ 965 (1131)
.+.++++.--. .....|.|..+ ..+ ++.+--..+|..|-- +.++-.....+.++.... +
T Consensus 232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 99998876432 23556777654 333 333333445544433 444433333444333210 2
Q ss_pred CCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceee---ecC-------------CCCCCCeEEEEEccCCCEEEEE
Q 001178 966 VGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQW---VPQ-------------DVLSSPISSAAYSCNSQLIYAT 1027 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~---~~~-------------~~~~~~v~~i~~s~dg~~l~s~ 1027 (1131)
.-++.|.+|.|.++|.++. .|.++.||+..-...+.. ... ....+...-+..|-||+.|.+.
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578999999999999985 999999999864333221 110 0012234668889999988876
Q ss_pred e
Q 001178 1028 F 1028 (1131)
Q Consensus 1028 ~ 1028 (1131)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 5
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.46 Score=56.30 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=127.9
Q ss_pred cCCCCEEEEEe-C------CeEEEEECCCceeEEEEeC-CCCCeeEEEEeCCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001178 842 SKNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGMED-S-----TIQIYNVRVD 907 (1131)
Q Consensus 842 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~d-g-----~I~iwd~~~~ 907 (1131)
+..+..+++|+ . ..+..||..+++-.....- ....-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455666665 3 3488899887643332221 12223445554 56889999999 3 5778887765
Q ss_pred eeE--EeecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEE-EEcCCCcE
Q 001178 908 EVK--TKLKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV-QFHSDQVR 979 (1131)
Q Consensus 908 ~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v-~~s~d~~~ 979 (1131)
+=. ..+........... -+|...|+||.|| ++..||..+.+-........ ..... ...-+|+.
T Consensus 360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-------~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-------RRSGHGVAVLGGKL 430 (571)
T ss_pred ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-------ceeeeEEEEECCEE
Confidence 422 22222222222222 2688899999996 47778877754322221111 11111 22234555
Q ss_pred EEEEe-C------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCceeeEe
Q 001178 980 LLVNH-E------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 980 l~~~~-d------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~ 1047 (1131)
.++|. + ..+..||..++.....-.-... .... . .-.-++.+.+.||.|+ +|..||..+.+-...
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~-g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v- 506 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGF-G-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV- 506 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccc-e-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEc-
Confidence 55532 2 4578899887654332211100 1111 1 2234788888888776 377788877654332
Q ss_pred cCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccCCC
Q 001178 1048 APSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1048 ~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
..-. .+ .+.+. +.+ .++.+.++||.|| +|-.||..+.+ |....+..
T Consensus 507 ~~m~-~~------rs~~g-~~~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~~~ 557 (571)
T KOG4441|consen 507 APMT-SP------RSAVG-VVV----LGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTEPE 557 (571)
T ss_pred ccCc-cc------ccccc-EEE----ECCEEEEEecccCccccceeEEcCCCCCc--eeeCCCcc
Confidence 1111 11 00011 111 2678999999988 47778777766 98887744
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.014 Score=39.92 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=33.6
Q ss_pred ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 864 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 864 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
++++..+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667777888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=2.6 Score=45.09 Aligned_cols=151 Identities=18% Similarity=0.248 Sum_probs=81.2
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCe-EEEEECCC--ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe-ecc
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGK-VSLFNMMN--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV-RVD 907 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~-i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~-~~~ 907 (1131)
....+..+..++||++++++..|. +.-||--. .+...+ ....+|..+.|.| ++.+.+++ ..|.|++=+. ...
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 456688888999999999999766 45677542 333332 2457899999999 67766644 8888887762 122
Q ss_pred eeEEe----ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 908 EVKTK----LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 908 ~~~~~----~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
+.-.. +..-.-.+..++|.+++...|+++.. .+ +...+.++.=.... .....+.....+.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~---~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDR---VGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-G---GGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECc---cccCCCCceEEEEEcCCCceEEEC
Confidence 21111 11122347899999998877766554 33 44444443211111 111122568899999888999999
Q ss_pred eCCeEEEE
Q 001178 984 HETQLAIY 991 (1131)
Q Consensus 984 ~d~~i~vw 991 (1131)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99987655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.03 E-value=3.5 Score=46.22 Aligned_cols=278 Identities=11% Similarity=0.135 Sum_probs=145.0
Q ss_pred cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-----CCCEEEEEeCCC
Q 001178 357 PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-----DGNFIGVAFTKH 431 (1131)
Q Consensus 357 pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-----dg~~las~~~d~ 431 (1131)
++++..+++|+..|.++||+...++...... ..-..-+.+|..++.-+ +...||+ =.-+
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~l---------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDL---------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccE---------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 4455568999999999999996544221100 01123345677776542 2335555 4557
Q ss_pred eEEEEEecCCCcc------ceeeeeecCcC--CeeEEEEec----CCCceEEEEEcCCCcEEEEeCCCceeE-EecC--C
Q 001178 432 LIHLYTYQGSNDL------CQSLEIDAHVG--GVNDLAFSY----PNKQLCIVTCGDDKLIRVWDLSGRKLF-QFEG--H 496 (1131)
Q Consensus 432 ~i~vwd~~~~~~~------~~~~~~~~h~~--~V~~l~~s~----d~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~--h 496 (1131)
.+.||.+...... .....+..|.- ....++.-| .++. +++.=+.||.+.+++.+.-... .+.. .
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCCC
Confidence 7889988332111 11112233332 223333333 2233 7888999999999995444432 2322 3
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-----------------------eeEEecCCCc--eEEEEEEcc
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-----------------------SRVDYDAPGL--WCTTMLYSA 551 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~--~v~~~~~s~ 551 (1131)
.+|+ ++.+.. +.+++++.+..+..|...... ..+.+..... .|..+.++.
T Consensus 177 PgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~ 251 (418)
T PF14727_consen 177 PGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSS 251 (418)
T ss_pred CcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCC
Confidence 3443 343333 478888888888888642100 0011111111 233344443
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC----CC---CEEEEEEcCCcEEEEEcCCCeEEE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT----TR---NRILAAGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~----~~---~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1131)
....+++-+ ...+.+.+. +|.+....+- .-.+.....|.. ++ ..+++++.++.+.||.-.+ .+.
T Consensus 252 ~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~W 322 (418)
T PF14727_consen 252 SESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVW 322 (418)
T ss_pred CCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEE
Confidence 444454444 567777775 4654433322 211222222221 22 2588899999999987433 333
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
........-.+.-..|..-...+++-+.+|.+.+--+.+..
T Consensus 323 sA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 323 SAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred ecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 33222111012222233345678888899999998776653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.2 Score=43.80 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred EEEeecCCceEEEeee-cceeeEEee--cCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEE
Q 001178 772 RLLYTNSGIGILALWS-NGVQKLWKW--NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYV 848 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~-dg~i~iw~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 848 (1131)
.++|+.+.+.+....+ +-.+..||. +++.... .-.++++...+... ......+++..+|++.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~~~e-------~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQPFE-------SLEPDGMTIDTEGNLY 226 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCCCcC-------CCCCCcceEccCCcEE
Confidence 4556656555555544 556666663 3322211 11334443332211 1122346667788866
Q ss_pred EEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEE
Q 001178 849 MSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 893 (1131)
Q Consensus 849 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 893 (1131)
++.- .++|...|..+|+.+.+++.+...|++++|--.+-.++.+.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 6665 78999999999999999999999999999964222344443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.6 Score=47.89 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=73.3
Q ss_pred CccEEEEEe-cCCeEEEEeCCCCcee----EEecC---C----CceEEEEEEccCCCEEEEEeec--CCCCceEEEEeCC
Q 001178 510 NIHFIFSTA-VDGKIKAWLYDNVGSR----VDYDA---P----GLWCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNES 575 (1131)
Q Consensus 510 ~~~~l~s~s-~dg~i~~wd~~~~~~~----~~~~~---~----~~~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~ 575 (1131)
+.++|+..+ ..++|++.|+.+.... ..+.. . -.....+..-|+|+.++++-.+ +++.|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666665 6789999998743221 12211 0 0123445556889888876433 3456789999988
Q ss_pred CCeeeEEEecccCC--ceEEEEEeCCCCEEEEEE--------------------cCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 576 EGALKRTYIGFRKK--SAGVVQFDTTRNRILAAG--------------------EDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+.+........... .-....+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88877776653321 233477888888888754 24679999999999999998764322
Q ss_pred CcceEEEc--CCCCEEEEEEC-CCcEEEE
Q 001178 634 SLPRLRFN--KEGNLLVVTTA-DQGIKIL 659 (1131)
Q Consensus 634 ~i~~v~~s--p~~~~l~~~~~-dg~i~iw 659 (1131)
...-+.|. |+..+-++++. ..+|..|
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEE
Confidence 23445554 44555444433 3344433
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.29 Score=58.57 Aligned_cols=181 Identities=15% Similarity=0.209 Sum_probs=102.3
Q ss_pred CCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEE---EeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLA---FHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~---~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
...+|++++|+.||+.++.|- +|.|.+||+..++.++.+..+..+.+.+- +.. ++..+.++...|. +|.+.-.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEEEec
Confidence 577899999999999999997 89999999999999998887666655543 344 4557778877776 5665422
Q ss_pred e-e--------EEeecccccCeeEEEEccCCCE---------EEEEeCCC-cEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 908 E-V--------KTKLKGHQKHITGLAFSTNLNI---------LVSSGSDA-QLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 908 ~-~--------~~~~~~h~~~V~~l~~s~dg~~---------l~s~~~Dg-~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
+ + ...+.+-.++|.+..--|+... +++...-+ -|.++- .+......+.+.....-
T Consensus 206 k~~L~~~~~kskcl~sg~~g~Vis~s~i~~e~l~~~~v~hf~~v~L~p~~sIvt~fP------i~f~~q~pPa~v~~~~~ 279 (1206)
T KOG2079|consen 206 KALLNMNTDKSKCLLSGKNGEVISASPISDENLGSLLVSHFGFVSLVPLSSIVTLFP------IKFMYQKPPAGVVGSGS 279 (1206)
T ss_pred hhhhcccchHHHHhhcCCCCceEecccCCcchhhhhheeeeeEEEeecccceeeecc------eEEEEecCCCceecccc
Confidence 2 1 1112344566666554443211 11111111 111221 11111111112111222
Q ss_pred eEEEEcC------CCcEEEEEeCCeEEEEeCCCcccceee--ecCCCCCCCeEEEEEccCC
Q 001178 969 TRVQFHS------DQVRLLVNHETQLAIYDGSKMECIRQW--VPQDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 969 ~~v~~s~------d~~~l~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~v~~i~~s~dg 1021 (1131)
....++. .+-.++++..+.+.++.+...+-..++ ..+....+.+.++.|-+..
T Consensus 280 ~s~~ins~~ts~e~~~~ia~s~nNkL~v~sI~~sn~~~ql~~~~~~efa~Silsi~W~~s~ 340 (1206)
T KOG2079|consen 280 HSKLINSDSTSVEEDVVIAASYNNKLVVKSIPNSNFYAQLQPRREGEFAGSILSIHWRRST 340 (1206)
T ss_pred ceeeeeccccccccceEEEEEeCCeEEEEEEecccceEEEeeccccccccchhheeeeccc
Confidence 2223322 244666778888888888754444333 2223336788888887554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.033 Score=40.09 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=30.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcc
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER 382 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~ 382 (1131)
....|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 456799999999998 8999999999999999 4543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=7.7 Score=47.49 Aligned_cols=242 Identities=11% Similarity=0.035 Sum_probs=115.4
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
-.+..+.++|||++|+.+.+.+--.-+ .+.+.++.+|..+...+.. .-..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~-----------------~l~v~d~~tg~~l~~~i~~----~~~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQY-----------------GIRFRNLETGNWYPELLDN----VEPSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEE-----------------EEEEEECCCCCCCCccccC----cceEEEEeeCCCE
Confidence 445678889999988877553222222 2234455555533322211 1145999999987
Q ss_pred EEEEe-C------CeEEEEECCCc--eeEEEEeCCCCCee-EEEEeCCCCcEEEEEeCC---CcEEEEEee--cceeEEe
Q 001178 848 VMSAG-G------GKVSLFNMMNF--KVMTTFMSPPPAST-FLAFHPQDNNIIAIGMED---STIQIYNVR--VDEVKTK 912 (1131)
Q Consensus 848 la~~~-d------g~i~vwd~~~~--~~~~~~~~~~~~i~-~l~~s~~~~~~la~g~~d---g~I~iwd~~--~~~~~~~ 912 (1131)
|+... + ..|..+++.++ +....+........ .+..+. ++++++..+.. +.+.+|+.. +++....
T Consensus 186 ~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 264 (686)
T PRK10115 186 FYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFVF 264 (686)
T ss_pred EEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence 77654 2 25888899887 33444443333333 333343 56655544433 468888843 3332222
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE--EeCCe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSD-A--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQ 987 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~D-g--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~--~~d~~ 987 (1131)
+..-.+....+. +..+.+++....+ . .|...++.... ....+. +. .....+..+.+..+ .|+. ..++.
T Consensus 265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~--~~~~l~-~~-~~~~~i~~~~~~~~--~l~~~~~~~g~ 337 (686)
T PRK10115 265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQ--QWEELI-PP-RENIMLEGFTLFTD--WLVVEERQRGL 337 (686)
T ss_pred EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcc--cCeEEE-CC-CCCCEEEEEEEECC--EEEEEEEeCCE
Confidence 222222222222 2223333332221 2 33333443211 111111 11 11235667777733 4443 34554
Q ss_pred --EEEEeCCCcccceeee-cCCCCCCCeEEEEEc--cCCC-EEEEEe---cCCcEEEEECCCCc
Q 001178 988 --LAIYDGSKMECIRQWV-PQDVLSSPISSAAYS--CNSQ-LIYATF---TDGSIGVFDADSLR 1042 (1131)
Q Consensus 988 --i~vwd~~~~~~~~~~~-~~~~~~~~v~~i~~s--~dg~-~l~s~~---~dg~i~vwd~~~~~ 1042 (1131)
+++++..++ .+..+. .. ...+..+.++ +++. ++++.+ .-+.++.||+.+++
T Consensus 338 ~~l~~~~~~~~-~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTR-EVIGIAFDD---PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCC-ceEEecCCC---CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 455555433 333332 11 1223334444 3443 444444 34789999988765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.62 E-value=1.6 Score=43.12 Aligned_cols=137 Identities=11% Similarity=0.043 Sum_probs=77.7
Q ss_pred cCCeeEEEEecCCCceEEE-EEcCC--------CcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEE
Q 001178 454 VGGVNDLAFSYPNKQLCIV-TCGDD--------KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1131)
Q Consensus 454 ~~~V~~l~~s~d~~~~~l~-s~s~d--------~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1131)
..+.++-..+|+|+ +++ +.+.- |.++.|-..+ .+..+...-+--+.++|.. ....+-++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence 34566777889999 332 22221 2223332111 1111222222334566752 2224445667777888
Q ss_pred EEeCCCC-------ceeEEecC----CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEE
Q 001178 525 AWLYDNV-------GSRVDYDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV 593 (1131)
Q Consensus 525 ~wd~~~~-------~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 593 (1131)
-||++-. ..+..+.. .....-.+++..+|.+.+++-. .++|...|..+|+.+..+.-... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 8884422 22222222 1112234566778888777765 78999999999999999887654 7899
Q ss_pred EEEeCC
Q 001178 594 VQFDTT 599 (1131)
Q Consensus 594 ~~~s~~ 599 (1131)
+||...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 998643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.59 Score=55.56 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=95.4
Q ss_pred CCCCEEEEEe-C------CeEEEEECCCceeEE--EEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecce
Q 001178 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMT--TFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDE 908 (1131)
Q Consensus 843 ~dg~~la~~~-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~ 908 (1131)
-++...+.|+ + ..+..||..+..-.. .+....... +++ .- ++++.+.|+.++ ++..||..+.+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VI-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EE-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 3666666665 3 247788887664321 111111112 222 22 678888898764 47889987653
Q ss_pred --eEEeecccccCeeEEEEccCCCEEEEEeCCC-----------------------cEEEEEcCCCceeeeeeeecCCCC
Q 001178 909 --VKTKLKGHQKHITGLAFSTNLNILVSSGSDA-----------------------QLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 909 --~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----------------------~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
.+..+.........++ -+|+..+.||.++ .+..||..+.+-....... ...
T Consensus 379 W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r 454 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGT 454 (557)
T ss_pred EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccc
Confidence 2222222222122222 3678888887653 4777887775432222111 111
Q ss_pred CCCCceEEEEcCCCcEEEEEe-C------CeEEEEeCCC-ccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEecCC--
Q 001178 964 LPVGETRVQFHSDQVRLLVNH-E------TQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-- 1031 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~~~l~~~~-d------~~i~vwd~~~-~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-- 1031 (1131)
.-.+++. -+|+..++|. + ..+..||..+ .+- +..+... ......+++ +|++.++|+.|+
T Consensus 455 ---~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~~--~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 455 ---IRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTILH--DNTIMMLHCYESYM 525 (557)
T ss_pred ---ccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEEE--CCEEEEEeeeccee
Confidence 1112222 2344444442 2 2467899886 332 2222211 222222222 788999999888
Q ss_pred cEEEEECCCCce
Q 001178 1032 SIGVFDADSLRL 1043 (1131)
Q Consensus 1032 ~i~vwd~~~~~~ 1043 (1131)
.+..||..+.+-
T Consensus 526 ~~e~yd~~~~~W 537 (557)
T PHA02713 526 LQDTFNVYTYEW 537 (557)
T ss_pred ehhhcCcccccc
Confidence 777888877663
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.3 Score=45.65 Aligned_cols=174 Identities=9% Similarity=0.133 Sum_probs=114.8
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIY 991 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vw 991 (1131)
+.+-...|.++.|+|+.+.|++......-.+|=-..|+....+++... .....+.+..+|++.++-. ++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-----~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-----SDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-----CChhHeEEecCCEEEEEehhcceEEEE
Confidence 344455699999999999999998888888887777777666665432 3455778888888888753 7788887
Q ss_pred eCCCcccceeee-------cCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCcc
Q 001178 992 DGSKMECIRQWV-------PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTV 1064 (1131)
Q Consensus 992 d~~~~~~~~~~~-------~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 1064 (1131)
.+.......... .....+...-.++|+|.++.|+.+=+-+-+.||.+..+.......... .+ .....+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~-~~----~~~~~~ 230 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL-DP----TADRDL 230 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc-Cc----ccccce
Confidence 776543222211 111115677899999999999999888888888776332111110000 00 001111
Q ss_pred cc---EEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1065 FP---LVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1065 ~~---~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
+. ..+.|.+..+.+|+-+.+++.+.-.+...+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11 246788878889999999998888887665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.036 Score=54.20 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCEEEEEe-CCeEEEEECCCceeE-EEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-cCee
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KHIT 921 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-~~V~ 921 (1131)
+..+++|. +|.|.+|+..-...+ ..+......|.+..-.-+++.+..++..||.|+.|++.-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34556665 899999887622111 11112223344433333356689999999999999999999888888888 6677
Q ss_pred EEEEccCCCEEEEE--eCCCcEEEEEcCC
Q 001178 922 GLAFSTNLNILVSS--GSDAQLIFWNTDT 948 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~--~~Dg~v~lwd~~~ 948 (1131)
.+..+..+++++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777777777 7788888888765
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.54 E-value=4.4 Score=49.57 Aligned_cols=239 Identities=11% Similarity=0.010 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCeEEEEECCCceeEEEEeCCCCC--------eeEEEEeC---------------CCCcEEEEEeCCCcEE
Q 001178 844 NDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGMEDSTIQ 900 (1131)
Q Consensus 844 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~I~ 900 (1131)
++.+.++..++.|.-.|..+|+.+-++...... .+.+++.. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444434788888999999888776532211 12233321 0234677888999999
Q ss_pred EEEeecceeEEeecccccCee-------------EEEEcc--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001178 901 IYNVRVDEVKTKLKGHQKHIT-------------GLAFST--NLNILVSSGS----------DAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~-------------~l~~s~--dg~~l~s~~~----------Dg~v~lwd~~~~~~~~~~ 955 (1131)
-.|.++|+..-.+. ..+.|. .+.-+| .+..++.++. +|.|+-+|..+|+..-..
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999998876653 222110 111111 1345555542 688999999999876654
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCC--eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET--QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
....+... .. .+++.....+..+ ...-||.+.+....-.-. . +..+....+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn----~----~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPMGN----Q----TPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeCCC----c----cccccCCccccCcccccceE
Confidence 43211110 00 0122222111111 222334333332211000 0 00010111101111224567
Q ss_pred EEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC---eEEEEecCCcEEEEecCCCcccccc
Q 001178 1034 GVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN---QLAVGLTDGSVKVIEPSETERKWGV 1102 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~---~l~s~~~Dg~v~iW~~~~~~~~w~~ 1102 (1131)
.-.|++||+..-.+...+...-.-+....++ -+...-.++. .++.++.+|.+++.|..+++..|.+
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~---L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPS---LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCce---EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 7788888888776654221110001111111 1212111332 8999999999999999999999974
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.8 Score=44.22 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe
Q 001178 844 NDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI 920 (1131)
Q Consensus 844 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V 920 (1131)
+|.++.+.+ ...|++||+.+++.+..-......+..=-...-+..+.+-.-.+|.-..||.++.+++..+. -.+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 455565555 35699999999998877553322221111111133444556678888999998888776655 23344
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 921 TGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
+.++- |+..|+.++...++++-|.++
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHH
Confidence 55543 555677666666777777666
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.05 Score=39.16 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~ 442 (1131)
...|.+++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 457999999999999999999999999998 443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.34 E-value=4.1 Score=42.11 Aligned_cols=176 Identities=10% Similarity=0.141 Sum_probs=106.9
Q ss_pred eCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 871 MSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 871 ~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.+....+.++.|+| +.+.|++......-.|+=..+|..+.++.-. -..--.+++..+|++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34455699999999 4555554545555555555678877765411 223456888888888888888999999988775
Q ss_pred ceeeee---eeecCCCCC-CCCceEEEEcCCCcEEEEEeC-CeEEEEeCCCcccc---eeeecCCC----CCCCeEEEEE
Q 001178 950 EKRKSI---AIQLPAGKL-PVGETRVQFHSDQVRLLVNHE-TQLAIYDGSKMECI---RQWVPQDV----LSSPISSAAY 1017 (1131)
Q Consensus 950 ~~~~~~---~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~d-~~i~vwd~~~~~~~---~~~~~~~~----~~~~v~~i~~ 1017 (1131)
...... .+....... ......++|+|.+..|.+..+ .-+.||.+..+..- .....+.. .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322211 111111111 357789999999998888754 44666655532211 11001100 0235777888
Q ss_pred cc-CCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1018 SC-NSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1018 s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+ .+.+|+-+.+++.+...|... +.+..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ls 271 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG-EVIELLS 271 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC-CeeeeEE
Confidence 76 566777777888888888754 3344443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.7 Score=51.69 Aligned_cols=233 Identities=9% Similarity=0.008 Sum_probs=117.1
Q ss_pred CCCEEEEEeCC------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC------CcEEEEe-CC
Q 001178 420 DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWD-LS 486 (1131)
Q Consensus 420 dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~iwd-~~ 486 (1131)
.+..++.|+.+ ..+..||..++.-. ....+. +...-.+++... +. +.++||.| .++..|| ..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666665 36888888876322 111222 222344455543 44 78888888 3567788 44
Q ss_pred CceeE--EecCCccCeEEEeecccCCccEEEEEecCCe-----EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 487 GRKLF--QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-----IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 487 ~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
++-.. .+........... -+|.+.+.|+.||. +-.||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 43221 1211111111111 24467788888864 5666665543222211111111122223366677777
Q ss_pred eecCCC--CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-----EEEEEcCCCeEEEEEeccCCC
Q 001178 560 GTSKEG--DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-----IKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 560 ~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|.+... -..+..||..+.+....-.......-..++.- ++...+.||.|+. +..||..+.+....-......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 643332 25788999888765443322222122223332 5667777776653 777888776655442222221
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-----EEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQG-----IKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~-----i~iw~~~~~ 664 (1131)
..+..+.. ++...++|+.||. |..||..++
T Consensus 514 s~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 514 SAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 12222222 4667788887763 455554443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.24 Score=59.20 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=74.8
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
.+..+|.|+..|.|-..|+.+. +.+...-..-.++|++++|+.||+ .++.|-.+|.|.+|| -.++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4557889999999999888764 221111122457999999999999 789999999999999 77788888888888
Q ss_pred CeEEEeecc-cCCccEEEEEecCCeEEEEeC
Q 001178 499 PVYSVCPHQ-KENIHFIFSTAVDGKIKAWLY 528 (1131)
Q Consensus 499 ~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~ 528 (1131)
+++++-+.. ..++..++++..-|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 233346777766665 5543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.034 Score=54.34 Aligned_cols=127 Identities=13% Similarity=0.057 Sum_probs=67.6
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~ 502 (1131)
..-+.|+.|.-+++...+...+. -.-|...-.-+. -+. -++.|+.+|.|.+|+ ..|.....+..-...|.+
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~---~~~--~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVT---ASA--KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred ccccCCcccccchhhhhhhhhhh--hhhhhcceeecc---cCc--eEEeecccceEEEecCCccchHHHhhhccccccee
Confidence 33456777777776553321110 111211111111 122 488899999999998 344433333323333433
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEccCCCEEEEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~ 559 (1131)
+-. ...++.+..+++.||.|+.|++.-.+..-....|. .++.....+..+++++..
T Consensus 107 ~Ip-~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 107 GIP-NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIA 163 (238)
T ss_pred ccc-cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEee
Confidence 322 23444688899999999999987666655555454 333333333344444443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.68 E-value=5.2 Score=48.54 Aligned_cols=74 Identities=12% Similarity=0.169 Sum_probs=52.0
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----------cee----EEe------e-cccccCeeEEEEccC---CC
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----------DEV----KTK------L-KGHQKHITGLAFSTN---LN 930 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----------~~~----~~~------~-~~h~~~V~~l~~s~d---g~ 930 (1131)
-.|..+.++| .|++||..+..|.+ |..+.. |+. ... + ..+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4588899999 89999888876644 433321 111 110 0 134567899999997 57
Q ss_pred EEEEEeCCCcEEEEEcCCCc
Q 001178 931 ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.35 E-value=12 Score=42.68 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=84.9
Q ss_pred CCeeEEEEecCCCceEEEEEc--CCCcEEEEeCCCceeEEecCCccCeEEEeecccC--CccEEEEEecCCeEEEEeCCC
Q 001178 455 GGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 455 ~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
.+|..++|. ||++ .++|.- ..|.+++=| .+.+..| .-|..++|.|.. +...+++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd--s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD--SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC--ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478899998 6775 455542 122222211 1122233 357888887642 233577777889999998752
Q ss_pred C-----ceeEEecCC---Cc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC--CeeeEEEecccCCceEEEEEeC
Q 001178 531 V-----GSRVDYDAP---GL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 531 ~-----~~~~~~~~~---~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
. +.......+ .- --..+.|+|....|++-.. ...-.++++.. .+....+. ..+.|.|.||.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~----~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~ 165 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA----RDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTK 165 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec----CceeEeeeeeeCCceEEEecc--CCceEEEEEecC
Confidence 2 111111111 01 1245779998888776653 22223444432 22333333 445899999999
Q ss_pred CCCEEEEEE-cCCcEEEEEcCC
Q 001178 599 TRNRILAAG-EDNQIKFWDMDN 619 (1131)
Q Consensus 599 ~~~~l~~~~-~dg~i~iwd~~~ 619 (1131)
||++|+++- ..=.-++||-..
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCch
Confidence 999877753 334567888654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.89 Score=51.17 Aligned_cols=153 Identities=12% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCeeEEEEeCCCCcEEEEEe--CCCcEEEEEeecceeEEeecccccCeeEEEEccCC----CEEEEEeCCCcEEEEEcCC
Q 001178 875 PASTFLAFHPQDNNIIAIGM--EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg----~~l~s~~~Dg~v~lwd~~~ 948 (1131)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+.. -..|.++.|.|-+ ..|........|.+|.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899985 555555442 334443322 223333 3459999999853 2455667788999999873
Q ss_pred Cceeeeeeee--c--CCCCCCCCceEEEEcCCCcEEEEEeCCeE-EEEeCCC--cccceeeecCCCCCCCeEEEEEccCC
Q 001178 949 WEKRKSIAIQ--L--PAGKLPVGETRVQFHSDQVRLLVNHETQL-AIYDGSK--MECIRQWVPQDVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 949 ~~~~~~~~~~--~--~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~vwd~~~--~~~~~~~~~~~~~~~~v~~i~~s~dg 1021 (1131)
........+. . .....+.-...+.|+|....|++-....+ .++++.. .+....+.. .+.|.|.||.+||
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG 167 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDG 167 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcC
Confidence 2221111111 1 11111123346789999999988543333 3444432 333333322 6799999999999
Q ss_pred CEEEEEecC-CcEEEEECC
Q 001178 1022 QLIYATFTD-GSIGVFDAD 1039 (1131)
Q Consensus 1022 ~~l~s~~~d-g~i~vwd~~ 1039 (1131)
+.|+++-.. =.-+|||-.
T Consensus 168 ~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCCeEEEEEecCc
Confidence 988776522 346788854
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.7 Score=51.91 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=94.0
Q ss_pred CCcEEEEEeCCC------cEEEEEeecceeEEe--ecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCcee
Q 001178 886 DNNIIAIGMEDS------TIQIYNVRVDEVKTK--LKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKR 952 (1131)
Q Consensus 886 ~~~~la~g~~dg------~I~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~ 952 (1131)
++.+++.|+.++ .+..||..+.+-... +.........+. -+++.++.||.+ ..+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 445555555432 466777766543221 111111122222 367777888765 34777888775432
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---C----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEE
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---E----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~ 1025 (1131)
.......+ ..-.+++. -+++..+.|. + ..+..||..+.+-...-.... ...-.+ +...++++.+
T Consensus 372 ~~~~lp~~-----r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~-~~~~~~~iyv 442 (534)
T PHA03098 372 EEPPLIFP-----RYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHYGGC-AIYHDGKIYV 442 (534)
T ss_pred eCCCcCcC-----CccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cccCce-EEEECCEEEE
Confidence 22211111 11112222 3455555543 1 458889987654332211111 111112 2334677777
Q ss_pred EEecC--------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEe
Q 001178 1026 ATFTD--------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIE 1092 (1131)
Q Consensus 1026 s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~ 1092 (1131)
.|+.+ ..+.+||..+.+-.. +.... .+.. .+ . .+.. ++.+++.||.+ +.|..+|
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~-~~r~--~~-----~-~~~~---~~~iyv~GG~~~~~~~~~v~~yd 509 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLN-FPRI--NA-----S-LCIF---NNKIYVVGGDKYEYYINEIEVYD 509 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceee-CCCCC-cccc--cc-----e-EEEE---CCEEEEEcCCcCCcccceeEEEe
Confidence 77643 238888988765332 22111 1110 01 1 1222 55788888765 4677888
Q ss_pred cCCCccccccccC
Q 001178 1093 PSETERKWGVAVP 1105 (1131)
Q Consensus 1093 ~~~~~~~w~~~~p 1105 (1131)
+.+.+ |....+
T Consensus 510 ~~~~~--W~~~~~ 520 (534)
T PHA03098 510 DKTNT--WTLFCK 520 (534)
T ss_pred CCCCE--EEecCC
Confidence 77665 987654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.08 E-value=20 Score=44.15 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=113.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccC--------eEEEeecc--------------cCCccEEEEEecCCeEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP--------VYSVCPHQ--------------KENIHFIFSTAVDGKIKAW 526 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~--------v~~~~~~~--------------~~~~~~l~s~s~dg~i~~w 526 (1131)
.++.++.++.|.-.| .+|+.+.++...... ...+.+.. ...+..|+.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 356666677777777 777777665432110 11222221 1223478889999999999
Q ss_pred eCCCCceeEEecCCCce--------E----EEEEEcc--CCCEEEEEeecCC------CCceEEEEeCCCCeeeEEEecc
Q 001178 527 LYDNVGSRVDYDAPGLW--------C----TTMLYSA--DGSRLFSCGTSKE------GDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 527 d~~~~~~~~~~~~~~~~--------v----~~~~~s~--~g~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
|.++++....+...+.. . ..+.-.| .+..+++++...+ .+|.|+-+|.++|+++-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 99998888765432110 0 0111111 1345555543222 2688999999999988776521
Q ss_pred c---------C--------CceEEEEEeCCCCEEEEEE------------------cCCcEEEEEcCCCeEEEEEeccCC
Q 001178 587 R---------K--------KSAGVVQFDTTRNRILAAG------------------EDNQIKFWDMDNVNMLTSTEAEGG 631 (1131)
Q Consensus 587 ~---------~--------~~v~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1131)
. + ..-...++++....++.+. ..+.|.-.|.++|+..-..+...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 0 0112345555555555422 135577778888888776654222
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEECCCcEEEEecCCCch
Q 001178 632 L-------PSLPRLRFNK-EGN---LLVVTTADQGIKILANADGLR 666 (1131)
Q Consensus 632 ~-------~~i~~v~~sp-~~~---~l~~~~~dg~i~iw~~~~~~~ 666 (1131)
. ....-+.+.. +|+ .++.++.+|.+.++|-.+++.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 0 0011122222 553 789999999999999999843
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.65 Score=51.06 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEE---------CCCCc--eeeEecCCccccCCCCCCCCccccEEEEEcCCC--
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFD---------ADSLR--LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE-- 1075 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~-- 1075 (1131)
.-.|..+..++.|..++.++.+|.+.++= ++.|+ ..|+..+.....-. .+..+....++|||+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCccC
Confidence 45678899999999999999898776653 22332 34444332211111 1234666789999975
Q ss_pred CCeEEEEecCCcEEEEecCCCccccccccCCCC
Q 001178 1076 PNQLAVGLTDGSVKVIEPSETERKWGVAVPVDN 1108 (1131)
Q Consensus 1076 ~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~~ 1108 (1131)
+..|+.-+.|+.||+|++++....|-..+|+..
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpgepgR 212 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGR 212 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCCcCC
Confidence 678888999999999999999988887766653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.6 Score=51.27 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=75.1
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeC-----
Q 001178 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY----- 528 (1131)
Q Consensus 456 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~----- 528 (1131)
..+-+.-|.-++ ..+.-+....+.||| ..+.....-. ...+.|..+.|...++++.+++.+..+.|.++.-
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 344455566899999 4444322221 4578999999999999999999999999999843
Q ss_pred CCCce----e--EEecCC-CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 529 DNVGS----R--VDYDAP-GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 529 ~~~~~----~--~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
.+..+ + ..+..+ .++|.+..|.++|..++.++ +.+.++|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECCC
Confidence 11111 1 122233 35789999999998887774 478888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.5 Score=52.47 Aligned_cols=188 Identities=13% Similarity=0.032 Sum_probs=91.3
Q ss_pred CCCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeE
Q 001178 843 KNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVK 910 (1131)
Q Consensus 843 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~ 910 (1131)
.++..++.|+ + ..+..||..+.+-...-..+..........- ++++++.|+.++ .+..||..+++-.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3555555554 2 2477888877654322111111111112222 678888888763 4777887665322
Q ss_pred E--eecccccCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 911 T--KLKGHQKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 911 ~--~~~~h~~~V~~l~~s~dg~~l~s~~~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
. .+........ + ..-+++.++.||.+ ..+..||+.+.+-..... .+... ...+++ ..++...+.
T Consensus 372 ~~~~lp~~r~~~~-~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r---~~~~~~-~~~~~iyv~ 443 (534)
T PHA03098 372 EEPPLIFPRYNPC-V-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP--LPISH---YGGCAI-YHDGKIYVI 443 (534)
T ss_pred eCCCcCcCCccce-E-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC--CCccc---cCceEE-EECCEEEEE
Confidence 1 1211111111 1 22356777777742 357889987754322211 11111 111222 234555555
Q ss_pred Ee-C--------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 983 NH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 983 ~~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
|. + ..+.+||..+.+-...-..... ......+. -++++++.|+.+ +.|.+||..+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 42 1 2388899887553322111100 11112222 377888888754 468888887665
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=15 Score=41.34 Aligned_cols=152 Identities=9% Similarity=0.093 Sum_probs=87.0
Q ss_pred eEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeee-
Q 001178 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS- 954 (1131)
Q Consensus 878 ~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~- 954 (1131)
..+..++ ++.++++|..-..++-|| .+.. ...-......++++.|.+++..++++ .+|.+ +|....++....
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence 3445666 677777665443233333 2221 11122234568999999998877655 55654 444444331110
Q ss_pred eeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 955 IAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 955 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
.............+..+.|.+++..+++|..|.+.... +.|+.-.............+.+.|.++++.+++| .+|.|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence 01111111112458889999999999999888776654 4444433332122225678999998888777766 488877
Q ss_pred EE
Q 001178 1035 VF 1036 (1131)
Q Consensus 1035 vw 1036 (1131)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.66 E-value=8.6 Score=39.25 Aligned_cols=193 Identities=12% Similarity=0.090 Sum_probs=127.5
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~ 955 (1131)
....++-+| ||..-.++...+.|--.|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+. .
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---T 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---E
Confidence 455677788 88888888888888888888998776665665666778888998877765544 455566655442 2
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCC----------eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHET----------QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIY 1025 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~----------~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~ 1025 (1131)
.+..+..+.........|.++|.+-+++..| .|++|+... ...-+.||..|||...+
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G~gpyGi~atpdGsvwy 204 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------GGGPYGICATPDGSVWY 204 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------CCCCcceEECCCCcEEE
Confidence 3344444555678889999999999886433 355555432 34567889999999888
Q ss_pred EEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1026 ATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1026 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.-.++.|...|..++. ...+....... .... =.|+..-+..-+|....+.+.-+|.+...
T Consensus 205 aslagnaiaridp~~~~-aev~p~P~~~~------~gsR----riwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGH-AEVVPQPNALK------AGSR----RIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCC-cceecCCCccc------cccc----ccccCccCcEEEeccCCceeeEeCccccc
Confidence 87778888888877763 22222222111 1111 12333345677777777788888876555
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=14 Score=40.72 Aligned_cols=158 Identities=11% Similarity=0.013 Sum_probs=88.8
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEE-EEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCC
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIF-WNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSK 995 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~l-wd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~ 995 (1131)
.+.+.++.+.+++.+++++ ..|.+.. ++-. ++. -.... ......+..+.+.+++..++++..|.+++=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~t--W~~~~---~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTA--WTPHQ---RNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCe--EEEee---CCCcccceeeeEcCCCCEEEEecCCEEEEccCCC
Confidence 4578899999988666554 4554432 2211 110 00111 1222678899999999998888888765433444
Q ss_pred cccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 996 MECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 996 ~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
|........+ ......+.++.|.+++..++++ .+|.+. ...+.|+....+...... .. .-..+.|..
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~-------~~--~~~~~~~~~- 312 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEV-------PS--NFYKIVFLD- 312 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCC-------Cc--ceEEEEEeC-
Confidence 4433322211 1013468899999988866655 577665 455666654443321111 11 112355544
Q ss_pred CCCeEEEEecCCcEEEEecC
Q 001178 1075 EPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1075 ~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+ +.....+..|.|.-|+-.
T Consensus 313 ~-~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 P-EKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred C-CceEEECCCceEEEecCC
Confidence 2 345667778988877654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.12 Score=60.22 Aligned_cols=199 Identities=11% Similarity=0.158 Sum_probs=112.6
Q ss_pred CCCCCeeEEEecCC-CCEEEEEe-CCeEEEEECC--CceeEEEEe-----CCCCCeeEEEEeCC--CCcEEEEEeCCCcE
Q 001178 831 NAEDVVPCVALSKN-DSYVMSAG-GGKVSLFNMM--NFKVMTTFM-----SPPPASTFLAFHPQ--DNNIIAIGMEDSTI 899 (1131)
Q Consensus 831 ~~~~~i~~l~~s~d-g~~la~~~-dg~i~vwd~~--~~~~~~~~~-----~~~~~i~~l~~s~~--~~~~la~g~~dg~I 899 (1131)
+..+.+..+.|-.- ...+. . -|.+.||+++ .|+....+. .....+.-+.|.|- +.-++..+..+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 45566666666321 11111 2 2678889865 344333222 12223344444431 55778888899999
Q ss_pred EEEEeecceeEEeecccccCeeEEE-----------EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-CC
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLA-----------FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG 967 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~-----------~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~ 967 (1131)
++....+... ..+++|...++.++ .||||..+|.+..||.+++|.+.-.......+......|.. ..
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~ 286 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPR 286 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCc
Confidence 9988765432 55667887777654 48999999999999999999876433333333333333321 22
Q ss_pred ceEEEEcCC---------CcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE------------E
Q 001178 968 ETRVQFHSD---------QVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL------------I 1024 (1131)
Q Consensus 968 v~~v~~s~d---------~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~------------l 1024 (1131)
++.+ |... ..+++++. +..+++|.....+|...+.. ..|..+. -+||+. +
T Consensus 287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~-----d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLI-----DGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred eeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcc-----cceEeec-CCCccccchhhhHHHHHHH
Confidence 3333 3322 12334443 56799999888777733322 2344444 344442 2
Q ss_pred EEEecCCcEEEEECC
Q 001178 1025 YATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~ 1039 (1131)
+.-+-|+.|.+|.-.
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 334467888888644
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.50 E-value=24 Score=43.19 Aligned_cols=113 Identities=16% Similarity=0.056 Sum_probs=68.8
Q ss_pred ceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC-CceeeE
Q 001178 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS-LRLRCR 1046 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~ 1046 (1131)
..-.+..|-..++.+|-...+++||+...++.+...... ....|+.+++ .+..+++|+..-.|..+.++. ++.+..
T Consensus 936 ~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~ 1012 (1205)
T KOG1898|consen 936 GPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV 1012 (1205)
T ss_pred ccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhcc-CceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE
Confidence 344577788889999999999999999888777654432 1456777776 467889888666666554432 233333
Q ss_pred ecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1047 IAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+..-. .+. .|. ++.+ - |...++.+..=|.+.+-++..
T Consensus 1013 fadD~-~pR-------~Vt--~~~~-l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1013 FADDP-VPR-------HVT--ALEL-L-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EeCCC-ccc-------eee--EEEE-e-cCCceeeccccCcEEEEECCC
Confidence 33211 111 122 2222 2 445677777766666666543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.3 Score=53.43 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCCeEEEEEccCCCEEEEEecCCcEEEEECCC----------C--ceeeEecCCccccCCCCCCCCccccEEEEEcCCC-
Q 001178 1009 SSPISSAAYSCNSQLIYATFTDGSIGVFDADS----------L--RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQE- 1075 (1131)
Q Consensus 1009 ~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~- 1075 (1131)
...|..+.++++|++|+..|.. .|.|-.+.. | ...|+........ +. .........+.|||..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~~--~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-FT--SNSSLEIKQVRWHPWSE 159 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCC-cEEEEEeccccCccccccCCCcceeEEEEEechhh-cc--CCCCceEEEEEEcCCCC
Confidence 5679999999999999999964 455554432 1 2233322111111 11 1223555689999973
Q ss_pred -CCeEEEEecCCcEEEEecCCCcccccccc
Q 001178 1076 -PNQLAVGLTDGSVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1076 -~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~ 1104 (1131)
+..|+.-+.|+++|+||+.....-|.+..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 57899999999999999987666666665
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.3 Score=48.43 Aligned_cols=185 Identities=10% Similarity=0.009 Sum_probs=89.3
Q ss_pred CCCEEEEEe-C-----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC--CcEEEEEeeccee--EEee
Q 001178 844 NDSYVMSAG-G-----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED--STIQIYNVRVDEV--KTKL 913 (1131)
Q Consensus 844 dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d--g~I~iwd~~~~~~--~~~~ 913 (1131)
++..+++|+ + .++..||..+++-...-.-+..........- ++.+.++|+.+ ..+..||..+++- +..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455556665 2 2477788877543322111111111111223 77888888864 3577888765432 2222
Q ss_pred cccccCeeEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE
Q 001178 914 KGHQKHITGLAFSTNLNILVSSGSDA---QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI 990 (1131)
Q Consensus 914 ~~h~~~V~~l~~s~dg~~l~s~~~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v 990 (1131)
........ +..-+|+..+.||.++ .+..||..+.+-........+. .-.+ +..-+|+..+.| |.+.+
T Consensus 350 ~~~r~~~~--~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-----~~~~-~~~~~~~IYv~G--G~~e~ 419 (480)
T PHA02790 350 LKPRCNPA--VASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-----YKSC-ALVFGRRLFLVG--RNAEF 419 (480)
T ss_pred CCCCcccE--EEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-----ccce-EEEECCEEEEEC--CceEE
Confidence 21111112 2233677888888654 4778888765432222211111 1111 223345555555 45678
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
||..+.+-... ............+ .-+|+..++||.+ .++.+||..+.+
T Consensus 420 ydp~~~~W~~~-~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLI-DDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEc-CCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 88876543321 1111001122222 2377888888754 346666665544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=93.15 E-value=12 Score=38.74 Aligned_cols=192 Identities=12% Similarity=0.100 Sum_probs=109.2
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc-cCCCCCCCCCeeEEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT-NDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~i~~l~~s~d 844 (1131)
...-...+.|..+|..+-+.+.-|.-.+ +.+++.+|+... ..++ ...--..+++..|
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d 100 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP--PRYFGEGITILGD 100 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T--TT--EEEEEEETT
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC--ccccceeEEEECC
Confidence 3455677888888888888777664333 233444454332 1222 2223345555544
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-----cC
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-----KH 919 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-----~~ 919 (1131)
.-+..+--++...+||..+.+.+.++.-. +.=..++. ++..|+..+....++++|..+-+....+.... ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 43444444899999999999999988643 34455553 55666667667789999987766555544221 23
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC---------CCCCCCceEEEEcCCCcEEEEEe
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA---------GKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~---------~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
++-|.|- +|...|=.-....|..-|..+|+.....-+.... .....-...||+.|....+.+..
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556775 6766776666667888888887765543221110 01124567899988877666544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.1 Score=48.88 Aligned_cols=120 Identities=14% Similarity=0.271 Sum_probs=78.1
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-ccccCeeEEEEc--cCCCEEEEEeCCCcEEEEE
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAFS--TNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~dg~~l~s~~~Dg~v~lwd 945 (1131)
++...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-...|.++.
T Consensus 24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444555566665 55555555556679999998876443322 356889999985 6899999999999999985
Q ss_pred cCC---------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeC
Q 001178 946 TDT---------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDG 993 (1131)
Q Consensus 946 ~~~---------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~ 993 (1131)
-.. +..... +.+ ....+.+|....|.++|.+ +++.++.+.|+|-
T Consensus 103 Q~R~dy~~~~p~w~~i~~--i~i-~~~T~h~Igds~Wl~~G~L-vV~sGNqlfv~dk 155 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRK--IDI-SSHTPHPIGDSIWLKDGTL-VVGSGNQLFVFDK 155 (631)
T ss_pred ccchhhhcCCcccceeEE--EEe-ecCCCCCccceeEecCCeE-EEEeCCEEEEECC
Confidence 421 111111 111 1233367889999999864 5566778888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.94 Score=54.79 Aligned_cols=146 Identities=14% Similarity=0.101 Sum_probs=95.3
Q ss_pred CCCeeEEEecCCCCEEEEEe--CC-eEEEEECCCceeEE-----EEeC------CCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GG-KVSLFNMMNFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
.-++..+...+|++..++.. +| .|..||+.+...-. .+.. ......++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666777888888777665 33 58999987643221 1111 12345677787743445667788999
Q ss_pred EEEEEeecce-eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 899 IQIYNVRVDE-VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 899 I~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
|++..+.... ....+. -....+|++|+|.|+.++.|-..|++.-|...-... ..+..+.......|.+|.|-...
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik---~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK---SEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccccee---ecccCCCcCCCcceeEEEEecce
Confidence 9988765332 222222 345689999999999999999999999887654221 11222222223678899998888
Q ss_pred cEEEE
Q 001178 978 VRLLV 982 (1131)
Q Consensus 978 ~~l~~ 982 (1131)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 88876
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.3 Score=51.64 Aligned_cols=147 Identities=10% Similarity=0.100 Sum_probs=88.9
Q ss_pred cCeeEEEEccCCCEEEE--EeCCCcEEEEEcCCCceeee---eeeec--CCCCCCCCceEEEEcCCCc--EEEEEeCCeE
Q 001178 918 KHITGLAFSTNLNILVS--SGSDAQLIFWNTDTWEKRKS---IAIQL--PAGKLPVGETRVQFHSDQV--RLLVNHETQL 988 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s--~~~Dg~v~lwd~~~~~~~~~---~~~~~--~~~~~~~~v~~v~~s~d~~--~l~~~~d~~i 988 (1131)
-+|..+...+|+...++ .+.+-.|..||+.+-..... .++.. ..........++.|.|.-. .+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666667778665443 34455789999987432221 11110 1111224556677776533 3444578888
Q ss_pred EEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEE
Q 001178 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLV 1068 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1068 (1131)
++..+........-... ....++++|+|.|+.++.|...|++.-|.. +++....+...-..+ ...+++
T Consensus 181 ~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e--------~yrvl~ 248 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEE--------NYRVLS 248 (1405)
T ss_pred hhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCC--------CcceeE
Confidence 88877643333222222 568899999999999999999999998874 355444444333221 356778
Q ss_pred EEEcCCCC
Q 001178 1069 VTSHPQEP 1076 (1131)
Q Consensus 1069 v~~~p~~~ 1076 (1131)
|+|.....
T Consensus 249 v~Wl~t~e 256 (1405)
T KOG3630|consen 249 VTWLSTQE 256 (1405)
T ss_pred EEEeccee
Confidence 88887543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.64 E-value=12 Score=43.96 Aligned_cols=177 Identities=10% Similarity=0.126 Sum_probs=88.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee-eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
.+..+.|+.+..+| +...+|+++||++-... .... .........|..+.|...|= .+.+. +|.+.+-+ ....
T Consensus 85 ~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~~~~~ 158 (829)
T KOG2280|consen 85 ELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILINGVEEP 158 (829)
T ss_pred CeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcCCCcc
Confidence 78899999877655 56689999999986532 2110 11122333466666666553 33333 44555544 3333
Q ss_pred eeEEecC---CccCeEEEeeccc-CCccEEEEEe-cCCeEEEEeCCCCc-eeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 489 KLFQFEG---HEAPVYSVCPHQK-ENIHFIFSTA-VDGKIKAWLYDNVG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 489 ~~~~~~~---h~~~v~~~~~~~~-~~~~~l~s~s-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+.++.. ...+-.|-..... .....++-.. ..+ ..+...+... ....+......+..+.+||+.++|+.-..
T Consensus 159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~- 236 (829)
T KOG2280|consen 159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE- 236 (829)
T ss_pred hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence 3333332 1111111111111 1111111111 000 0111111111 11122223356888999999999998875
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.|.|++-+....+....+..........++|..
T Consensus 237 ---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 237 ---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred ---CCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 888988888777766666533222222455543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.42 E-value=20 Score=40.41 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=107.5
Q ss_pred ecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-
Q 001178 841 LSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ- 917 (1131)
Q Consensus 841 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~- 917 (1131)
..-||+.++...+|.|.-+|..++..+-...... ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+-......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 4446666666567888888888887664433221 2233333333 555 6678899988888988888877766554
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCC
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK 995 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~ 995 (1131)
-.+..-..-.++ .+...+.|+.+.-.+..+++.......... . ...+..-....++...+... ++.+.-.+..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~--~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-L--SLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-c--ccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 233333667777777777665444322211 0 00111111133333333333 44667777777
Q ss_pred cccceeeecCCCC-CCCe------EEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 996 MECIRQWVPQDVL-SSPI------SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 996 ~~~~~~~~~~~~~-~~~v------~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
|..+......... ...+ ..-..--++ -+..++.++.+...+..+|+.+.+....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 7766553221100 0111 110111122 2355667788999999999988887753
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.27 E-value=8.9 Score=43.24 Aligned_cols=206 Identities=14% Similarity=0.090 Sum_probs=108.8
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeeccc--ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGH--QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPV 966 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h--~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 966 (1131)
.+.++..+|.|.-.|..+++.+-....- ...+.+-.+..+|+ +..++.++.++..|..+++......... . .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-P 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-e
Confidence 3444577777777777777654222111 12233333333665 7777888888888887777654443322 0 1
Q ss_pred CceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCcee
Q 001178 967 GETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLRLR 1044 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--dg~i~vwd~~~~~~~ 1044 (1131)
.......-.++..+....++.+.-.+..+|+..-...........+..--...++ .++.+.. ++.+.-.|+.+|...
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEe
Confidence 1222233344444444456777777777777655533321001111111112233 3444444 556777888888877
Q ss_pred eEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccC
Q 001178 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
...................+..-.|- .+..+..++.++.+.-.+...++..|....+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 76543222211100000001110111 1224577888888999999999999999987
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.06 E-value=7.2 Score=45.62 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
--.|+||+. +|.++..+.-..+++..+.|+.+ ..|++...||++.+|++.......... ........|..+.|..
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~sv---g~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSV---GFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhccccc---ccccccCceeEEEEec
Confidence 345888885 46666665555568999999976 466777899999999987644322111 1111113344444444
Q ss_pred CCcEEEEEeCCeEE--------EEeCCC---c----ccceeeec----------------------------C--CCCCC
Q 001178 976 DQVRLLVNHETQLA--------IYDGSK---M----ECIRQWVP----------------------------Q--DVLSS 1010 (1131)
Q Consensus 976 d~~~l~~~~d~~i~--------vwd~~~---~----~~~~~~~~----------------------------~--~~~~~ 1010 (1131)
.|..+.+.++.-+. +|.... . .+...+.+ | ....+
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 44443332222221 221111 0 00000000 0 00135
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+..+..||+.++|+-=..+|.|.+-+++..+..+.+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 67889999999999999999999999999888887776
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.61 Score=32.52 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.5
Q ss_pred CcEEEEEEecCCC--cEEEEEcCCCeEEEEECCC
Q 001178 348 SSVVSMDFHPFHH--TLLVVGCGDGEITLWDVGL 379 (1131)
Q Consensus 348 ~~V~~~~fspdg~--~llasg~~dg~v~iwd~~~ 379 (1131)
+.|.+|+|||+.. .||+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998654 5788888889999999985
|
It contains a characteristic DLL sequence motif. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.36 E-value=5.9 Score=44.50 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=79.3
Q ss_pred CCeeEEEEeCCCCcEEEEEe-----------CCC-cEEEEEeec--ce--eEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 875 PASTFLAFHPQDNNIIAIGM-----------EDS-TIQIYNVRV--DE--VKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
.....++|.+ +++++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.++| +++ +..+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 4567888988 777776542 223 676665432 22 223343334456889999998 444 4444
Q ss_pred CcEEEEEcCCCce---eeeeeee-cCCC--CCCCCceEEEEcCCCcEEEE-EeC-------------------CeEEEEe
Q 001178 939 AQLIFWNTDTWEK---RKSIAIQ-LPAG--KLPVGETRVQFHSDQVRLLV-NHE-------------------TQLAIYD 992 (1131)
Q Consensus 939 g~v~lwd~~~~~~---~~~~~~~-~~~~--~~~~~v~~v~~s~d~~~l~~-~~d-------------------~~i~vwd 992 (1131)
...++.+.+.... ....... .... ........++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 4333435443211 1111112 1111 01245678999999987664 311 3455555
Q ss_pred CCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
..+++. ..+... -.....++|+++|+++++-.
T Consensus 171 pdg~~~-e~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecC---cCCCccceECCCCCEEEEcc
Confidence 554432 222221 34567899999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.51 Score=55.29 Aligned_cols=126 Identities=18% Similarity=0.237 Sum_probs=79.7
Q ss_pred CCCcEEEEEEe----cCCCcEEEEEcCCCeEEEEECC--CCcccccccceeecccccccceeceeccCCCCCEEEEEE--
Q 001178 346 QGSSVVSMDFH----PFHHTLLVVGCGDGEITLWDVG--LRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-- 417 (1131)
Q Consensus 346 h~~~V~~~~fs----pdg~~llasg~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-- 417 (1131)
..+.|-.++|- |.++ -.-|...|||++ .|+......+++ ...-...+.-+.|
T Consensus 131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 56677777774 3333 123678999876 344443322222 1122223334444
Q ss_pred -cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE-----------ecCCCceEEEEEcCCCcEEEEe-
Q 001178 418 -SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF-----------SYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 418 -spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~-----------s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
-++..++..+-.+++|++.++..... .-+.+|..++..++| ||||+ .++..+.||.++.|-
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 44677888888888998887766432 124568877776655 88999 899999999999998
Q ss_pred -CCCc----eeEEecCCc
Q 001178 485 -LSGR----KLFQFEGHE 497 (1131)
Q Consensus 485 -~~~~----~~~~~~~h~ 497 (1131)
+.|+ ++...+.|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 6665 445566676
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=8.1 Score=45.19 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=91.7
Q ss_pred CCcEEEEEeCCC-----cEEEEEeecceeEE--eecccccCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeee
Q 001178 886 DNNIIAIGMEDS-----TIQIYNVRVDEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 886 ~~~~la~g~~dg-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D--g~v~lwd~~~~~~~~~~~ 956 (1131)
++.++++|+.++ .+..||..+++-.. .+.........+ .-+|...+.||.+ ..+..||..+++-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 567777787653 46678877654322 222111112222 2467777888764 357788876543222111
Q ss_pred eecCCCCCCCCceEEEEcCCCcEEEEEe-C---CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCc
Q 001178 957 IQLPAGKLPVGETRVQFHSDQVRLLVNH-E---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGS 1032 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~ 1032 (1131)
. +.. ..-..+ ..-+|+..+.|+ + ..+..||..+.+-...-..... .... + +..-+|++.+.| |.
T Consensus 349 l--~~~---r~~~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~-~-~~~~~~~IYv~G---G~ 416 (480)
T PHA02790 349 L--LKP---RCNPAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKS-C-ALVFGRRLFLVG---RN 416 (480)
T ss_pred C--CCC---CcccEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccc-e-EEEECCEEEEEC---Cc
Confidence 1 111 111122 223455555543 2 3477888776543221111100 1111 2 223466666666 45
Q ss_pred EEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEecCCCcccccc
Q 001178 1033 IGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGV 1102 (1131)
Q Consensus 1033 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~~~~~~~~w~~ 1102 (1131)
+.+||..+.+-. .+.... .+.. . ..+.+. ++.+.+.||.+ .++..||+.+.+ |..
T Consensus 417 ~e~ydp~~~~W~-~~~~m~-~~r~----~---~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~--W~~ 476 (480)
T PHA02790 417 AEFYCESSNTWT-LIDDPI-YPRD----N---PELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS--WNI 476 (480)
T ss_pred eEEecCCCCcEe-EcCCCC-CCcc----c---cEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe--EEe
Confidence 788998766433 222111 1110 0 111222 56788888865 357788887666 754
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.077 Score=57.60 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=132.3
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
...+.+.+..++.++-+..+..||-.. ..... .........++|..+|..+++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le----~n~tg~aldm~wDkegdvlavl 92 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILE----LNPTGKALDMAWDKEGDVLAVL 92 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceecc----cCCchhHhhhhhccccchhhhh
Confidence 445666666677777777776665221 11111 1234455567888888877766
Q ss_pred e--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC
Q 001178 852 G--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL 929 (1131)
Q Consensus 852 ~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg 929 (1131)
. .+.+.+||+.+......-.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+.+
T Consensus 93 Aek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 5 68899999976433222112222233378999 88899999999999999988777666665599999999999876
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEE-----EeCCCcccceeeec
Q 001178 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAI-----YDGSKMECIRQWVP 1004 (1131)
Q Consensus 930 ~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~v-----wd~~~~~~~~~~~~ 1004 (1131)
+.+.++.|..+.+-...+...........+......-...=.|..-|..+..--.+.+.+ -..+....+ .+..
T Consensus 172 -~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~ 249 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQE 249 (615)
T ss_pred -eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Eeee
Confidence 555666665544433332111110000000000000000111222233332211111111 111111111 3333
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 1005 QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 1005 ~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
. .+.+.++.|--||.. .-+..-|.|..-.+.++++..
T Consensus 250 ~---~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLga 286 (615)
T KOG2247|consen 250 K---YGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGA 286 (615)
T ss_pred c---CCceeEEEEeccccc-cccccceeEEEEeccchHHHH
Confidence 3 567888888888754 446666777777777766543
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=90.48 E-value=58 Score=41.04 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=19.2
Q ss_pred CCCccceEEEEeecCCceEEEeeecc
Q 001178 764 TDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 764 ~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
..+-..+.+++++|||...++-..+-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccccCCcceEEECCCCcEEEecCCch
Confidence 34667788999999999777654443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.38 E-value=11 Score=42.44 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=77.8
Q ss_pred cCeeEEEEccCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 918 KHITGLAFSTNLNILVSSG-----------SDA-QLIFWNTDTW--EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~-----------~Dg-~v~lwd~~~~--~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
....+|+|.++|+++++-. ..+ .|.+++-..+ .......+. .+ . .....+++.++| + .++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~-l-~~p~Gi~~~~~G-l-yV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EE-L-SMVTGLAVAVGG-V-YVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cC-C-CCccceeEecCC-E-EEe
Confidence 3467889999998877753 223 6766654332 111111111 11 1 345778999999 4 444
Q ss_pred eCCeEEEE-eCCCc-----ccceeeecCCC----CCCCeEEEEEccCCCEEEEEecC-------------------CcEE
Q 001178 984 HETQLAIY-DGSKM-----ECIRQWVPQDV----LSSPISSAAYSCNSQLIYATFTD-------------------GSIG 1034 (1131)
Q Consensus 984 ~d~~i~vw-d~~~~-----~~~~~~~~~~~----~~~~v~~i~~s~dg~~l~s~~~d-------------------g~i~ 1034 (1131)
....|..| +.... +....+..... +......++|.|||.+.++-+.. |.|.
T Consensus 88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 44455544 44321 11111111111 13457789999999866655521 3455
Q ss_pred EEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1035 VFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
-++.++++.. .+. .+..++..++|+| ++.++++-..++
T Consensus 168 r~~pdg~~~e-~~a------------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 168 RYNPDGGKLR-VVA------------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEecCCCeEE-EEe------------cCcCCCccceECC-CCCEEEEccCCC
Confidence 5555544422 111 2234456789998 567776655443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.37 E-value=15 Score=40.44 Aligned_cols=164 Identities=14% Similarity=0.158 Sum_probs=92.8
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCc------EEEEEeec--c--eeE-----Eeeccccc--------CeeEEEEccCCC
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDST------IQIYNVRV--D--EVK-----TKLKGHQK--------HITGLAFSTNLN 930 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~------I~iwd~~~--~--~~~-----~~~~~h~~--------~V~~l~~s~dg~ 930 (1131)
-+.++.+.+.++++.++| .+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788999874555554 566666 65555543 1 011 11222222 334788888888
Q ss_pred EEEEEeCC------CcEEEEEcCCCceeeeeeee--c-------CCCCCCCCceEEEEcCCCcEEEEE------eCC--e
Q 001178 931 ILVSSGSD------AQLIFWNTDTWEKRKSIAIQ--L-------PAGKLPVGETRVQFHSDQVRLLVN------HET--Q 987 (1131)
Q Consensus 931 ~l~s~~~D------g~v~lwd~~~~~~~~~~~~~--~-------~~~~~~~~v~~v~~s~d~~~l~~~------~d~--~ 987 (1131)
++++.-.+ ..|+.++.+ ++......+. . ...........++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888876 4433322111 1 112233678899999999955542 122 1
Q ss_pred -------EEE--EeCCC-cccceeeecCCC------CCCCeEEEEEccCCCEEEEEec-----CCcEEEEECC
Q 001178 988 -------LAI--YDGSK-MECIRQWVPQDV------LSSPISSAAYSCNSQLIYATFT-----DGSIGVFDAD 1039 (1131)
Q Consensus 988 -------i~v--wd~~~-~~~~~~~~~~~~------~~~~v~~i~~s~dg~~l~s~~~-----dg~i~vwd~~ 1039 (1131)
+++ ||..+ +.....+.-... ....|+.+.+-+|+++|+.-=. ...++||.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 55544 333444322211 2578899999999997665321 2355555443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.1 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.6
Q ss_pred CCEEEEEEcCC-C--CEEEEEeCCCeEEEEEecC
Q 001178 410 ISVSRVAWSPD-G--NFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 410 ~~V~~~~~spd-g--~~las~~~d~~i~vwd~~~ 440 (1131)
+.|.+|+|||+ + .+||.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5999998889999999986
|
It contains a characteristic DLL sequence motif. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.18 E-value=39 Score=38.58 Aligned_cols=139 Identities=9% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
..+|..+.+...|.+. .|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| +++.+..|.
T Consensus 164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 4578889998888655 466776 677787776654311 122235677777777776 66666554 666665553
Q ss_pred eeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEEccCCCEEEEE
Q 001178 489 KLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 489 ~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
...... -..+.|..+.- +.. ..+..|+..|..+. ............ ..-..|.++....+|..-+..
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~q-G~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t 307 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQ-GELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGT 307 (671)
T ss_pred cccccCCCCcchheeeeec--ccC-CCEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeec
Confidence 222111 12233433321 222 24555665555432 222222111111 112245666667777655443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.03 E-value=4.8 Score=47.80 Aligned_cols=173 Identities=12% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|- ..| .|+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PH--tIN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPH--TINFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCc--eeeEEE
Confidence 7888888999999999865322110 01112222222 11 122333333332 112 133333
Q ss_pred Ecc--CCCEEEEEeCCCcEEEEEcCCCc--------eeee---e--eeecCCCCCCCCceEEEEc--CCCcEEEEEeC-C
Q 001178 925 FST--NLNILVSSGSDAQLIFWNTDTWE--------KRKS---I--AIQLPAGKLPVGETRVQFH--SDQVRLLVNHE-T 986 (1131)
Q Consensus 925 ~s~--dg~~l~s~~~Dg~v~lwd~~~~~--------~~~~---~--~~~~~~~~~~~~v~~v~~s--~d~~~l~~~~d-~ 986 (1131)
... +...|+.+..||.|.+|.++.-- .... . .........+..+..++++ ...+++|++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 322 34578888888888888663200 0000 0 0000111122577888998 88889999875 4
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCC---C---EEEEEecCCcEEEEEC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS---Q---LIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg---~---~l~s~~~dg~i~vwd~ 1038 (1131)
.|.||-...............+...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 56666544321111111112246789999998754 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.98 E-value=13 Score=36.92 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=82.9
Q ss_pred CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe----CC---eEEEE-eCCC----cc
Q 001178 930 NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH----ET---QLAIY-DGSK----ME 997 (1131)
Q Consensus 930 ~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----d~---~i~vw-d~~~----~~ 997 (1131)
..|..+...+.|.+|++...+......+... +.+..++++.-|.+|++-. .. .+|+| +++. ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 3444445566799999994333222222211 6788999999999999832 22 56765 2211 11
Q ss_pred cce-eeecCC------------------CCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce-eeEecCCccccCCC
Q 001178 998 CIR-QWVPQD------------------VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL-RCRIAPSAYMSQAS 1057 (1131)
Q Consensus 998 ~~~-~~~~~~------------------~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~ 1057 (1131)
.++ .+.+|. ..+.++.+++..|-..-|++|+ ++.+.+|.+..... ...+....+. ...
T Consensus 104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe-~~l 181 (215)
T PF14761_consen 104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFE-RSL 181 (215)
T ss_pred cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEech-hhh
Confidence 111 111210 1145677888888555566665 78899998754433 1111111111 111
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
..+.....+..+++.- +++|..+ |-.+++.++.
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred hheecCceEEEEEEEe---eEEEEec-CCEEEEEEEe
Confidence 1122334455566533 5777776 5558887764
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.79 E-value=11 Score=34.14 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=70.0
Q ss_pred EcCCCcEEEE-EeCCeEEEEeCCCcc--------cceeeecCCCCCCCeEEEEEcc-----CCCEEEEEecCCcEEEEEC
Q 001178 973 FHSDQVRLLV-NHETQLAIYDGSKME--------CIRQWVPQDVLSSPISSAAYSC-----NSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 973 ~s~d~~~l~~-~~d~~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~i~~s~-----dg~~l~s~~~dg~i~vwd~ 1038 (1131)
|......|++ +..++|.|++..... .+..+. . +..|++++-.+ +...|+.|+ ...+..||+
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-i---n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-I---NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-C---CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3333344555 346788888765322 222222 1 56777776554 334677766 788999999
Q ss_pred CCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1039 DSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
.....+..-.. ...+..+.+.-....+.-|+..|..+.|.-||-...|..|.+.
T Consensus 81 ~~N~d~Fyke~-----------~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEV-----------PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhC-----------ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 87665433221 2234544443333233456666668899999999999999875
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.2 Score=48.07 Aligned_cols=159 Identities=13% Similarity=0.060 Sum_probs=99.3
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEE-EEe-CCCC----Cee-EEEEeCCCCcEEEEEeCCCcEEEE-E
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT-TFM-SPPP----AST-FLAFHPQDNNIIAIGMEDSTIQIY-N 903 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~-~~~-~~~~----~i~-~l~~s~~~~~~la~g~~dg~I~iw-d 903 (1131)
....+..+-+.|||+.+.+-+..++.++++.+..... ++. ...+ .|+ ++..-. ++.-+.+++.||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567788899999999999888899999987654322 121 1111 122 222223 66677789999998776 4
Q ss_pred eecc-e----eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 904 VRVD-E----VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 904 ~~~~-~----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
...+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+...... .-.....+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-------~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-------AYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-------hhcCcceeeeCcccc
Confidence 4322 1 122222222344444433345567778888888877654422211111 113567789999999
Q ss_pred EEEEEeCCeEEEEeCCCccc
Q 001178 979 RLLVNHETQLAIYDGSKMEC 998 (1131)
Q Consensus 979 ~l~~~~d~~i~vwd~~~~~~ 998 (1131)
+|++-..|.++++.+++...
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.53 E-value=30 Score=36.34 Aligned_cols=207 Identities=11% Similarity=0.104 Sum_probs=118.1
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECC-------CceeEEEEeC-----CCCCeeEEEEeCCCCc------------E
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMM-------NFKVMTTFMS-----PPPASTFLAFHPQDNN------------I 889 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~-------~~~~~~~~~~-----~~~~i~~l~~s~~~~~------------~ 889 (1131)
.-+.|+++|.+.+-++.. .+...+||.. ...++.++.. .....+.+.|.. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 357899999887666655 5889999986 1223334432 124577787774 222 2
Q ss_pred EEEEeCCCcEEEEEeeccee-----EEeec-ccccCe-eEEEEccC--CCEE-EEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 890 IAIGMEDSTIQIYNVRVDEV-----KTKLK-GHQKHI-TGLAFSTN--LNIL-VSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 890 la~g~~dg~I~iwd~~~~~~-----~~~~~-~h~~~V-~~l~~s~d--g~~l-~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
++.+++||+|.=|...-+.. ...+. ...+.| ..+++... +.+| ++--..++|.++|-.-.....
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~------ 176 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL------ 176 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC------
Confidence 45678999999998532211 11221 112333 34565533 3444 444457889999765422110
Q ss_pred CCCCCCCCceEEEEcC------CCcEEEE-E-------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEcc
Q 001178 960 PAGKLPVGETRVQFHS------DQVRLLV-N-------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSC 1019 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~------d~~~l~~-~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~ 1019 (1131)
.+....+-.-.-|.| .+++.++ . .-|.|-+||.. |..++++... ..-..-+.|+..|
T Consensus 177 -~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~AP 253 (336)
T TIGR03118 177 -PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAP 253 (336)
T ss_pred -CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeCh
Confidence 011101101111222 1222222 1 12468889876 6666666332 2244567788765
Q ss_pred ------CCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1020 ------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1020 ------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.|.+|+----||+|..||..+|+.+..+....
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 56777776789999999999999888887543
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.42 E-value=30 Score=39.49 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=133.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+.....|..+.|.-.|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+
T Consensus 161 ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~------------------s~~~dk~I~al~~d~qg~- 218 (671)
T COG3292 161 LLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLA------------------SPPLDKAINALIADVQGR- 218 (671)
T ss_pred cccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcC------------------CCcchhhHHHHHHHhcCc-
Confidence 34677899999999996 55676665 566777777655421 011124566665555555
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCc--cCe
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHE--APV 500 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~--~~v 500 (1131)
|-+|+.+| |.+.+.++.+..... ..--.+.|..+.=..+|. +-.|+..|-.+.=-..+..... .+-|. ..|
T Consensus 219 LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~v 292 (671)
T COG3292 219 LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTV 292 (671)
T ss_pred EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCccccc
Confidence 44566666 777776652211100 000122333333333333 3334433322111112221111 11121 233
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.++.. +.+| -+.+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+-.+|.
T Consensus 293 nsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~ 365 (671)
T COG3292 293 NSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGE 365 (671)
T ss_pred cceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCc
Confidence 44432 2332 456666666665543221111111111111122222222 111111111 13445566667777
Q ss_pred eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
.++....-....++.+++.. +..+-.++...-+..|+..+ +........ -....|..+.-.|+++ |..|+.+|.++
T Consensus 366 ~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 366 LVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred EEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCeEe
Confidence 77776555555677777877 44566666664566676665 322222222 2233677787788887 77788887655
Q ss_pred E
Q 001178 658 I 658 (1131)
Q Consensus 658 i 658 (1131)
.
T Consensus 443 ~ 443 (671)
T COG3292 443 R 443 (671)
T ss_pred c
Confidence 3
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=89.31 E-value=33 Score=38.06 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.3
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCc
Q 001178 928 NLNILVSSGSD-----AQLIFWNTDTWE 950 (1131)
Q Consensus 928 dg~~l~s~~~D-----g~v~lwd~~~~~ 950 (1131)
++++++.||.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 46677777754 247788887644
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.86 E-value=5.1 Score=43.68 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..++|.++.||+|.+ ++|+--.+++|.+.+....+....... ..+..+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence 456999999999998 799999999999999854333221000 12234556999999976 5666
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+..| +.+|-+...+ +.......|...|.-..|+++.+-.+++|+-..+++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 666555 7788776543 222234678888999999999885333333234333
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=88.73 E-value=39 Score=36.61 Aligned_cols=210 Identities=10% Similarity=-0.016 Sum_probs=103.3
Q ss_pred CCCCeeEEEecCCCCEEEEEeCCe--EEEEECCCceeE---------------EEEeCCCCCeeEEEEeCCCCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAGGGK--VSLFNMMNFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~~~~~la~g~ 894 (1131)
+...|.++...+.-+.|++-+++. ++++++...... .....+................++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 567899999999999988888766 999998543310 111123333344444431222333444
Q ss_pred CCCcEEEEEeecc----eeEEee---c-ccccCeeEEEEccC--CCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCC
Q 001178 895 EDSTIQIYNVRVD----EVKTKL---K-GHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAG 962 (1131)
Q Consensus 895 ~dg~I~iwd~~~~----~~~~~~---~-~h~~~V~~l~~s~d--g~~l~s~~~Dg~v~lwd~~~--~~~~~~~~~~~~~~ 962 (1131)
...+|.++..... .....+ . .-..++..+..+++ ...++.|+..+...++++.. ....... ......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~s-l~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLS-LPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccc-cccccc
Confidence 5566777654322 111110 0 11233444444433 44666666542344555532 1100000 000000
Q ss_pred CCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceee-ecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 963 KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 963 ~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.......++..-+++.+|++-++..+.+ |....+..+.. ... .....++++. ..||++-. ++.|.|+++.++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~~~v~V-n~~G~~~~r~~~l~w---~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDEFGVFV-NLYGKRRSRNPILHW---EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred ccccCceEEEEECCCeEEEEECcEEEEE-eCCCCccccceEEEc---CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 0000233344445566666544444433 33321221111 111 4456677776 45666665 667999999999
Q ss_pred ceeeEecC
Q 001178 1042 RLRCRIAP 1049 (1131)
Q Consensus 1042 ~~~~~~~~ 1049 (1131)
+.+..+..
T Consensus 273 ~l~q~i~~ 280 (302)
T smart00036 273 ELLQELAD 280 (302)
T ss_pred ceEEEEec
Confidence 98777753
|
Unpublished observations. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.61 E-value=29 Score=41.00 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=57.1
Q ss_pred EEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcc
Q 001178 923 LAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~ 997 (1131)
+.|-|.|..++|-+.|| .|+++..+.-+ .... .. .......+..++|.-....++++..+.+.+|-..+..
T Consensus 252 LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr--HGef-~l-r~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyh 327 (1243)
T COG5290 252 LSWKPQGSKYATIGTDGCSTSESVIFFERNGLR--HGEF-DL-RVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred cccccCCceeeeeccCCCCCcceEEEEccCCcc--cCCc-cc-cCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceE
Confidence 78999999999988765 36666654411 1110 00 0011134556677766667777788899999988765
Q ss_pred cceeeecCCCCCCCeEEEEEccCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQ 1022 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~ 1022 (1131)
........ -..+.-+.|.|...
T Consensus 328 WYLK~e~~---ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVERQ---IPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEeec---CCCcceeeeccccC
Confidence 54443333 33566677877543
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.52 E-value=23 Score=44.52 Aligned_cols=148 Identities=11% Similarity=0.228 Sum_probs=94.0
Q ss_pred EeCCCcEEEEEeecceeEEeecccccCeeEEEEc--------cCCCEEEEEeCCCcEEEEEcCCCceeeeeeee---cCC
Q 001178 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS--------TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ---LPA 961 (1131)
Q Consensus 893 g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~---~~~ 961 (1131)
.+-|..+.+|+.+++.....+.+-...|..|..- |.=++|...+.--.|.++-+.-.+........ ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3457889999999877677777766677776542 23344444455555777655433221111110 001
Q ss_pred CCCCCCceEEEEcCCCcEEEEEeCCeEE--EEeCCCc---c-cc-------------eeeecC-CCCCCCeEEEEEccCC
Q 001178 962 GKLPVGETRVQFHSDQVRLLVNHETQLA--IYDGSKM---E-CI-------------RQWVPQ-DVLSSPISSAAYSCNS 1021 (1131)
Q Consensus 962 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~--vwd~~~~---~-~~-------------~~~~~~-~~~~~~v~~i~~s~dg 1021 (1131)
...+..+.++....+|+.+.+|.||.++ +|...++ + +- ..+... ..+..+|..+++...-
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 1223678889989999999999999766 3333321 1 10 111111 1336799999999888
Q ss_pred CEEEEEecCCcEEEEECCC
Q 001178 1022 QLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1022 ~~l~s~~~dg~i~vwd~~~ 1040 (1131)
..|.+-++.|+|++|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.50 E-value=44 Score=36.93 Aligned_cols=188 Identities=15% Similarity=0.177 Sum_probs=104.0
Q ss_pred EEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecc--cCCccE--EEEEe-cC---CeEEEEeCCCCce-eEEecC-
Q 001178 470 CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQ--KENIHF--IFSTA-VD---GKIKAWLYDNVGS-RVDYDA- 539 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~--~~~~~~--l~s~s-~d---g~i~~wd~~~~~~-~~~~~~- 539 (1131)
+++...+++-+.+||+.|+.+..+. .+.++.+.+.. .-+++. |+.++ .+ .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6788888899999999999998885 24455444311 112222 33443 32 5799998764322 222221
Q ss_pred ------CCceEEEEEE--cc-CCCEEEEEeecCCCCceEEEEeCC---CC----eeeEEEecccCCceEEEEEeCCCCEE
Q 001178 540 ------PGLWCTTMLY--SA-DGSRLFSCGTSKEGDSHLVEWNES---EG----ALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 540 ------~~~~v~~~~~--s~-~g~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
.-..+..+++ ++ +|.+.+.... .+|.+..|.+. .+ ++++.|.... .+..+.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 1123566666 33 4665555442 25666666543 33 4677777533 67888888888899
Q ss_pred EEEEcCCcEEEEEcCCC-----eEEEEEeccCCCCCcceEEEc--CCC-CEE-EEEECCCcEEEEecCCC
Q 001178 604 LAAGEDNQIKFWDMDNV-----NMLTSTEAEGGLPSLPRLRFN--KEG-NLL-VVTTADQGIKILANADG 664 (1131)
Q Consensus 604 ~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~v~~s--p~~-~~l-~~~~~dg~i~iw~~~~~ 664 (1131)
+.+-++.-|.-|+.+.. ..+.......-...|-.++.- +++ .+| ++.-.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887632 222222222222356666663 333 344 44445778999997543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.42 E-value=24 Score=35.18 Aligned_cols=147 Identities=10% Similarity=0.081 Sum_probs=87.2
Q ss_pred cEEEEEeCCCcEEEEEee--cceeEEeecccccCeeEEEEccCCCEEEEEeCC---C---cEEEE---EcCCC--ceeee
Q 001178 888 NIIAIGMEDSTIQIYNVR--VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD---A---QLIFW---NTDTW--EKRKS 954 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D---g---~v~lw---d~~~~--~~~~~ 954 (1131)
..|..+.....|.+|++. ..+.+..+..- +.|..+.++..|++|+|--.+ . .+|+| +.... .....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667789999988 33556666644 889999999999999986442 2 45554 33211 11110
Q ss_pred ee----------------eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc-ce-----eeecC---CCCC
Q 001178 955 IA----------------IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC-IR-----QWVPQ---DVLS 1009 (1131)
Q Consensus 955 ~~----------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~-~~-----~~~~~---~~~~ 1009 (1131)
.. +.+..-....+..+++..|-..-|++|.++.+.+|.+..... .. .+... ...+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 00 000011112467788888888888999999999998764433 11 11110 0002
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 1010 ~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
-....++|. +.|+|..+ +-.+++..+
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 334556654 66888876 667777664
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.39 E-value=20 Score=41.72 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCeEEEEecCCcEEEEecCCCccccccccCCC
Q 001178 1067 LVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1067 ~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
-++.+.+.++.+++|+=.-..|...|..+++-+|.+..|..
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 36778886666666655555888899889999999999876
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.6 Score=30.05 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=23.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCC--CeEEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGD--GEITLW 375 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~d--g~v~iw 375 (1131)
.....-.+.+|||||++++.+...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788999999999988888777 776666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.97 E-value=6.3 Score=49.22 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=96.3
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
|.+++..+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+.+++.... .+.+-+..|..+.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~-------------------~~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELA-------------------EYDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccc-------------------cccchhhhheeee
Confidence 4444445556666666777776444333 458899999999855433 2334444555544
Q ss_pred E--------cCCCCEEEEEeCCCeEEEEEecCCCccc------eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEE
Q 001178 417 W--------SPDGNFIGVAFTKHLIHLYTYQGSNDLC------QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRV 482 (1131)
Q Consensus 417 ~--------spdg~~las~~~d~~i~vwd~~~~~~~~------~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~i 482 (1131)
. -|.=++|...+.--.|.++-+.-.+... ...++....-.|+|+....+|+ .+++| .|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G-~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAG-RDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEee-cCC--CE
Confidence 3 3333444444444557776654322111 1112223345689999888888 45554 555 44
Q ss_pred Ee-----CC---Cc-e----------------eEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC
Q 001178 483 WD-----LS---GR-K----------------LFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 483 wd-----~~---~~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 530 (1131)
|. .+ ++ + +..+. .+..+|..+.+.. ...++++-+..|+|.+|++..
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 44 11 11 0 11223 5677899998854 346889999999999999875
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.92 E-value=9.8 Score=41.47 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=92.7
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCee-EEEecCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN 844 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d 844 (1131)
....+..+...|||+.+...+. ..+.++++........ ++-+...| .....|+ .+.+-..
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg---------~~~~~Vte~l~lL~G 279 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPG---------DSRHQVTEQLYLLSG 279 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCC---------chHHHHHHHHHHHhC
Confidence 4466778889999999988776 5677777654322111 01111111 0111121 1222334
Q ss_pred CCEEEEEe-CCeEEEE-ECCCc-----eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc
Q 001178 845 DSYVMSAG-GGKVSLF-NMMNF-----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ 917 (1131)
Q Consensus 845 g~~la~~~-dg~i~vw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~ 917 (1131)
|.-+.+++ ||.|.-| |.... ..++.++-...++..+.--. +.+-+++-+.+|++.++.....+.+..-. --
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-hh
Confidence 55555555 7776666 44321 23344443334455444433 56677788899999888765554433222 22
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
..+.-+++||.+.+|++-. .|.++++.+++.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 3567789999999998754 456888888764
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=87.72 E-value=37 Score=44.11 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=50.6
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
...|++++.-.+ +.+++....|.+.... ..+. +...........|..++......+.|...+|.++--+
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeecC
Confidence 456888888755 5667778889899888 5544 3334444455889999999999988888888887543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.53 E-value=51 Score=36.50 Aligned_cols=198 Identities=11% Similarity=0.176 Sum_probs=104.8
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeC---CCCcE--EEEEe-CC---CcEEEEEeec--ceeE
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGM-ED---STIQIYNVRV--DEVK 910 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~--la~g~-~d---g~I~iwd~~~--~~~~ 910 (1131)
|...+|+... .+-+.+||+... .++.+. .++...+..-. -+++. ||+++ .+ .+|++|.+.. +. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 3444555555 678999999765 444443 24444444321 02322 34443 32 4699998873 43 2
Q ss_pred Eeecc-------cccCeeEEEE--cc-CCC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 911 TKLKG-------HQKHITGLAF--ST-NLN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 911 ~~~~~-------h~~~V~~l~~--s~-dg~-~l~s~~~Dg~v~lwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
..+.. -...+..+++ ++ +|. +.+..+.+|.+..|.+.. +........... ..+.+..++....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDE 218 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecc
Confidence 33221 1124667776 33 455 566677889998888753 222112222211 1257888889998
Q ss_pred CcEEEEEe-CCeEEEEeCCC-----cccceeeecCCCCCCCeEEEEEcc--CCC-EEEEEe-cCCcEEEEECCC-Cceee
Q 001178 977 QVRLLVNH-ETQLAIYDGSK-----MECIRQWVPQDVLSSPISSAAYSC--NSQ-LIYATF-TDGSIGVFDADS-LRLRC 1045 (1131)
Q Consensus 977 ~~~l~~~~-d~~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~i~~s~--dg~-~l~s~~-~dg~i~vwd~~~-~~~~~ 1045 (1131)
..+|.++. +..|.-|+.+- +..+.... .......|-.+++-. +++ ||++.+ .+++..||+.+. ...+.
T Consensus 219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g 297 (381)
T PF02333_consen 219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVG 297 (381)
T ss_dssp TTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEE
T ss_pred cCCEEEecCccEEEEEecCCCCCCcceeeeccc-ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccc
Confidence 88888886 66788888762 22222211 122356788888753 443 666666 567899999875 34344
Q ss_pred Eec
Q 001178 1046 RIA 1048 (1131)
Q Consensus 1046 ~~~ 1048 (1131)
.+.
T Consensus 298 ~f~ 300 (381)
T PF02333_consen 298 SFR 300 (381)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.25 E-value=3.6 Score=40.31 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCeEEEEEecC
Q 001178 410 ISVSRVAWSPDG------NFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 410 ~~V~~~~~spdg------~~las~~~d~~i~vwd~~~ 440 (1131)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999944 3788889999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.14 E-value=2.5 Score=43.04 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=51.6
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeee-e-eecCCC------CCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCc
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-A-IQLPAG------KLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~-~~~~~~------~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~ 996 (1131)
+..++.+|++.+.+|.+++||+.+.+..... . ...... .....|..+.++.+|.-+++-++|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456889999999999999999997754433 1 111111 2336788888888888888878888888886633
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.29 E-value=24 Score=42.29 Aligned_cols=110 Identities=11% Similarity=0.225 Sum_probs=71.4
Q ss_pred CeeEEEec--CCCCEEEEEe-CCeEEEEECCC-------c----e---------eEEEEeCCCCCeeEEEEe--CCCCcE
Q 001178 835 VVPCVALS--KNDSYVMSAG-GGKVSLFNMMN-------F----K---------VMTTFMSPPPASTFLAFH--PQDNNI 889 (1131)
Q Consensus 835 ~i~~l~~s--~dg~~la~~~-dg~i~vwd~~~-------~----~---------~~~~~~~~~~~i~~l~~s--~~~~~~ 889 (1131)
.|..|... -+...|+.+. ||.|.+|.+++ . . +...+. ....+..++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 34444433 3445666665 79999997642 1 0 111111 23467889998 6 7889
Q ss_pred EEEEeCCCcEEEEEeecc--eeE-EeecccccCeeEEEEccCC---C---EEEEEeCCCcEEEEEc
Q 001178 890 IAIGMEDSTIQIYNVRVD--EVK-TKLKGHQKHITGLAFSTNL---N---ILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 890 la~g~~dg~I~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~dg---~---~l~s~~~Dg~v~lwd~ 946 (1131)
||+++....|.||-.... +.. ..-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999998888876542 111 1111366679999997753 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.14 E-value=13 Score=41.32 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=89.4
Q ss_pred CCcEEE-EEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC--------CEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001178 886 DNNIIA-IGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL--------NILVSSGSDAQLIFWNTDT-WEKRKSI 955 (1131)
Q Consensus 886 ~~~~la-~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg--------~~l~s~~~Dg~v~lwd~~~-~~~~~~~ 955 (1131)
+..+|. .|.....++-.|++.|+.+..+.-|..- -+.|.|+. +.|+-.+..+ |.--|..- +......
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s-vFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS-VFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc-eEEecccccCCceeee
Confidence 455444 4555567888889999999999988764 57777753 3455444443 33333322 2111111
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEE-EeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLV-NHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
... .-.......+..-...| ++|+ +..|.|++||--.-+....+.+. ...|..+..+.+|+++++.+ ..++.
T Consensus 555 esK--dY~tKn~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC-k~yll 627 (776)
T COG5167 555 ESK--DYKTKNKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC-KNYLL 627 (776)
T ss_pred eeh--hccccccccccccccCc-eEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee-cceEE
Confidence 111 11111223333333444 5555 55789999996544444444443 67899999999999988877 56777
Q ss_pred EEECC--CCceeeEe
Q 001178 1035 VFDAD--SLRLRCRI 1047 (1131)
Q Consensus 1035 vwd~~--~~~~~~~~ 1047 (1131)
+-|+. .|+...++
T Consensus 628 L~d~~ik~g~~aGr~ 642 (776)
T COG5167 628 LTDVPIKYGQPAGRD 642 (776)
T ss_pred EEecccccCCccccc
Confidence 77765 34444443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=86.13 E-value=69 Score=36.64 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce--eEEeec-----ccccCeeEEEEccCC------CEEEEEe----
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE--VKTKLK-----GHQKHITGLAFSTNL------NILVSSG---- 936 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~--~~~~~~-----~h~~~V~~l~~s~dg------~~l~s~~---- 936 (1131)
-.....|+|.| |+++|++--..|.|++++..++. .+..+. .-.+....|+|+|+- .+|....
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 34578899999 88877755546999999765442 222111 125668999999884 2333221
Q ss_pred ------CCCcEEEEEcCCC--ce--eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeC
Q 001178 937 ------SDAQLIFWNTDTW--EK--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985 (1131)
Q Consensus 937 ------~Dg~v~lwd~~~~--~~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d 985 (1131)
....|.-|.+... .. ........+... ...-..++|.|||.+.++..|
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~-~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN-DHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC-CcCCceEEECCCCcEEEEECC
Confidence 1234555555421 11 111111222111 134568889999987665433
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.91 E-value=16 Score=35.68 Aligned_cols=110 Identities=8% Similarity=-0.008 Sum_probs=62.8
Q ss_pred CccEEEEEecC--CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc
Q 001178 510 NIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR 587 (1131)
Q Consensus 510 ~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 587 (1131)
++.++.+.+.- ..|++||+++++...........+..--...-|.++..-.. .++.-..+|..+.+.+..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 44666666654 47999999988777654433212211111122333333222 27788889988887776665322
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
.-..+ ..|+..++.+....+++.-|.++.....++
T Consensus 132 --eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 132 --EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred --cceee--ecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 22333 335666777766677887787765544443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.89 E-value=53 Score=36.14 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=88.7
Q ss_pred CccceEEEEeecCCceEEEeeecce------eeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEE
Q 001178 766 SASKVARLLYTNSGIGILALWSNGV------QKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1131)
.-+.+..+.+.+++..+++.+++|. +..+++...... ...........+-+.. |.... ...-...+|
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~-G~~~~-----~~~~D~Egi 90 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG-IGGVTILDMIPLRDPD-GQPFP-----KNGLDPEGI 90 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC-ccceEeccceeccCCC-CCcCC-----cCCCChhHe
Confidence 3466778999977777888888877 544444431111 1111111111111211 11111 112255678
Q ss_pred EecCCCCEEEEEe-C------CeEEEEECCCceeEEEEeC---------------CCCCeeEEEEeCCCCcEEEEEeCC-
Q 001178 840 ALSKNDSYVMSAG-G------GKVSLFNMMNFKVMTTFMS---------------PPPASTFLAFHPQDNNIIAIGMED- 896 (1131)
Q Consensus 840 ~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~---------------~~~~i~~l~~s~~~~~~la~g~~d- 896 (1131)
++.++|.++++.. + ..|..++.. |+.+..+.. .+...-+++++| +++.|.++.+.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~ 168 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESP 168 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECcc
Confidence 8888888887776 5 568888876 655554421 234578999999 77755544332
Q ss_pred ----C--c-------EEEEEee--c-cee----EEeecc-----cccCeeEEEEccCCCEEEE
Q 001178 897 ----S--T-------IQIYNVR--V-DEV----KTKLKG-----HQKHITGLAFSTNLNILVS 934 (1131)
Q Consensus 897 ----g--~-------I~iwd~~--~-~~~----~~~~~~-----h~~~V~~l~~s~dg~~l~s 934 (1131)
+ . ++++... + ++. ...+.. ....|+.+.+-+++++|+-
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 5555444 3 222 222222 3467888999989887664
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.80 E-value=36 Score=37.55 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=78.1
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
...|+|.++.||+|.+.||+--.|.+|.+.+....+...........+ ...+....|+.. .-+|.-.+..+.+|...
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k--~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK--NANILGFCWTSS-TEIAFITDQGIEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC--cceeEEEEEecC-eeEEEEecCCeEEEEEc
Confidence 456799999999999999999999999999985533221111111111 134777888776 55666677778888765
Q ss_pred Cc-ccceeeecCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCc
Q 001178 995 KM-ECIRQWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLR 1042 (1131)
Q Consensus 995 ~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~ 1042 (1131)
.. +.++....+ +..|.-..|.++.+.++.++ ..+++.=+.+.++.
T Consensus 141 pekrslRlVks~---~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 141 PEKRSLRLVKSH---NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhhhc---ccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 32 233333333 77888888999888544433 44555555555443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.1e+02 Score=38.07 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=66.3
Q ss_pred EEecCCCCEEEEEeCCeEEEEECCCceeEEEEe--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee--cceeEEeec
Q 001178 839 VALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKLK 914 (1131)
Q Consensus 839 l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~--~~~~~~~~~ 914 (1131)
.|+.|-..++.+|-+..+++||+...++++... .-...|+.+++ .+..+++|+..-.|.++..+ ..+. ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 456677778888889999999998877766543 23456777777 45677778766666555444 3333 3332
Q ss_pred c--cccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 915 G--HQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 915 ~--h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
. -...|+++.+- |...+|.+..=|.+.+-.+.
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 2 22346766665 44567766666666555543
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.25 E-value=54 Score=33.81 Aligned_cols=196 Identities=10% Similarity=-0.045 Sum_probs=106.2
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-E
Q 001178 458 NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-V 535 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~ 535 (1131)
..++-.|||. .-+++...+.|--.| .+|+....--+....-..+... +|+..-++-+.. .|.-.|-++.+.. +
T Consensus 65 ~dvapapdG~--VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~g--pdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 65 FDVAPAPDGA--VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVG--PDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred cccccCCCCc--eEEecCccccceecCCCCCceEEEecCCCCCCceEEEC--CCCCeeEecCcc-eeEEecCcccceEEe
Confidence 4566667776 556666666666666 6665544433333333344332 233333332222 2222333222211 1
Q ss_pred Ee--cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 536 DY--DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 536 ~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.+ ...........|.+.|++-+++..+- -| -.|.. ...+..|....+..-..+|..|+|..-++.-.++.|-
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~--yG---rLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGA--YG---RLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecccc--ce---ecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceE
Confidence 11 12233567888999999888875311 11 11221 2234455544555667788999998877776777777
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..|..++.................+.-+|.|+.-++....+.+..+|..+.
T Consensus 214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 777766633222222221123455666778888888777778877776543
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=83.63 E-value=2.9 Score=38.76 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=44.6
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhccccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 126 (1131)
++.. ++|.|+-+.||||+..|..++|..++++--.-+.....+++++|+.+....++.+
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~ 83 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKE 83 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhh
Confidence 4444 9999999999999999999999999986544443335577778876666554443
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.89 E-value=17 Score=40.40 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=80.0
Q ss_pred EEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC--------CEEEEEeecCCCCceEEEEeCCC-CeeeEEEe--
Q 001178 516 STAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--------SRLFSCGTSKEGDSHLVEWNESE-GALKRTYI-- 584 (1131)
Q Consensus 516 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g--------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~-- 584 (1131)
.|+....++--|++.++.+-.+..+... -+.|.|+. ..|+-.+ +..|.-.|.+- |..+....
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-----~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-----DYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-----ccceEEecccccCCceeeeeeh
Confidence 4455556666677777766666666553 46677643 3344443 44555556542 32222111
Q ss_pred ccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 585 GFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 585 ~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
... .....+. ......++++++..|.|++||.-..+....++.-+. .|..+..+.+|.++++.+.. .+.+-|+
T Consensus 558 dY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 558 DYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred hcccccccccc-ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 110 1112222 233457999999999999999765444444444444 78899999999998877654 5666665
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.72 E-value=52 Score=40.61 Aligned_cols=251 Identities=13% Similarity=0.053 Sum_probs=116.2
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
.++..-|..+.+|+.+|.+.+|.+........... . .++-.. ... -+..+|..+...+.-.++.+-+
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~--------~~~~~~-~~~---~~kk~i~~l~~~~~~~~ll~l~ 86 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V--------TETVKF-EKE---FSKKPINKLLVCASLELLLILS 86 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h--------cchhHH-hhh---hccchhHHHhhcchhcchheec
Confidence 34455688899999999999998866432211110 0 000000 000 1256777777777777788888
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeeEEEEe--CC-CC--cEEEEEe-CCCcE-EEEEeecceeEEeecccccCeeEEEE
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFH--PQ-DN--NIIAIGM-EDSTI-QIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s--~~-~~--~~la~g~-~dg~I-~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
|+.|.++++.+.+...... +-..+...++. +. .+ .+.++.+ ....+ ..|+-+.+..+..--+-.....+++|
T Consensus 87 dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 165 (877)
T KOG2063|consen 87 DSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW 165 (877)
T ss_pred CCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc
Confidence 8889888887665521110 11111111110 00 11 1222222 11111 22322222222111111112222223
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecC
Q 001178 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~ 1005 (1131)
.|..+.++-.+....+|.-.++.........+... ..-..+.--+++..++.+.|+...+-|.......+.-...
T Consensus 166 --~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~---s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~l~w 240 (877)
T KOG2063|consen 166 --CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE---SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGTLVW 240 (877)
T ss_pred --cceeEEEeecceeEEEecCCCccccceeeeccccc---cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCceEe
Confidence 24444444443444455444442211122111111 2233455556666677777776666664432211111111
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
+....++. -+..|+++-+ ++.|.||+..++.++..+.
T Consensus 241 ---s~~P~~v~--~~~PYlIa~~-~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 241 ---SEVPLSVV--VESPYLIALL-DRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred ---cccchhhc--ccCceEEEEc-cccEEEEeccCHHHhhccc
Confidence 11122222 2455777666 6699999999998777773
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=82.38 E-value=29 Score=31.65 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=70.3
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCCCCCceEEEEcC-----CCcEEEEEeCCeEEEEeCC
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKS---IAIQLPAGKLPVGETRVQFHS-----DQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~~d~~i~vwd~~ 994 (1131)
-.|......|+.++.-|.|.|.+......... ..+..... ...+++++-.+ +...|+.|+...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi--n~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI--NQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC--CCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 34554555788888888888888765332111 01111111 13455554433 4557888999999999998
Q ss_pred CcccceeeecCCCCCCCeEEEEEcc----CCCEEEEEecCCcEEEEECCCCceeeE
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSC----NSQLIYATFTDGSIGVFDADSLRLRCR 1046 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~----dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1046 (1131)
....+-.-.. ...|.++.+-. +..++++|+ ++.|.-||.+..+....
T Consensus 82 ~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhhC----ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 7665443222 34566666632 344566655 88899898776655443
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.20 E-value=6.7 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1131)
|++++|.++. +++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5788777776 688999999999988887753 33444444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.49 E-value=7.3 Score=39.75 Aligned_cols=72 Identities=13% Similarity=0.126 Sum_probs=50.5
Q ss_pred EecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-------CCCCCEEEEEEcCCCCEEEEE
Q 001178 355 FHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-------DSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 355 fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~~~~spdg~~las~ 427 (1131)
+..++.+ |++-+.+|.+++||+.+++.+... ..+. .++. .....|..+.++.+|.-|++-
T Consensus 18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4556776 566678999999999998876532 1111 1122 466789999999999887776
Q ss_pred eCCCeEEEEEecC
Q 001178 428 FTKHLIHLYTYQG 440 (1131)
Q Consensus 428 ~~d~~i~vwd~~~ 440 (1131)
+ +|....|+.+-
T Consensus 85 s-ng~~y~y~~~L 96 (219)
T PF07569_consen 85 S-NGDSYSYSPDL 96 (219)
T ss_pred e-CCCEEEecccc
Confidence 5 47788888654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=81.48 E-value=1.1e+02 Score=35.19 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=39.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
.-...+.|+|.|||+ +|++--..|.|++++..++.......+ .......-.+....|+|+||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 445789999999997 666654469999998765532211000 000111136778999999884
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=81.31 E-value=1.3e+02 Score=35.99 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=87.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeee-ecCcCCeeEEEEecC-----CCceEEEEEc--CC-Cc
Q 001178 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DAHVGGVNDLAFSYP-----NKQLCIVTCG--DD-KL 479 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~h~~~V~~l~~s~d-----~~~~~l~s~s--~d-~~ 479 (1131)
.+.|..+.|.++++.+++...+|.|.+||...+..-... .+ ..+...|..=.|-++ +..++++.+. .+ -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 578999999999999999999999999999332211100 11 122222222133332 3343333333 12 23
Q ss_pred EEEEeC--CCceeEEec---CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-----C-ceEEEEE
Q 001178 480 IRVWDL--SGRKLFQFE---GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----G-LWCTTML 548 (1131)
Q Consensus 480 i~iwd~--~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~-~~v~~~~ 548 (1131)
.+++.. ++..+..+. .+........|... .| .|+-- .++.|.+|++...+....+... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-KLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CC-EEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 556664 445444443 12222222233322 22 23333 6789999998776544433222 1 1233443
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
--...+.|++. +..|++.|..-...+..+.
T Consensus 285 ~~s~nRvLLs~------~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 PPSPNRVLLSV------NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cCCCCeEEEEc------CCEEEEEeehhhhhhhhhh
Confidence 33344455554 6789999987655554444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.2e+02 Score=35.41 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=52.8
Q ss_pred CCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C-----CeEEEEeCCCc
Q 001178 928 NLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-----TQLAIYDGSKM 996 (1131)
Q Consensus 928 dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-----~~i~vwd~~~~ 996 (1131)
++.+++.|+.++ .+..+|+.+.+-...... ..........+++. -++++.+.|. + ..+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPV--EEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcC--CCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 566777777653 577888877543221111 00011111122222 2344444432 2 34678887765
Q ss_pred ccceeeec--CCCCCCCeEEEEEccCCCEEEEEecC----CcEEEEECCCCce
Q 001178 997 ECIRQWVP--QDVLSSPISSAAYSCNSQLIYATFTD----GSIGVFDADSLRL 1043 (1131)
Q Consensus 997 ~~~~~~~~--~~~~~~~v~~i~~s~dg~~l~s~~~d----g~i~vwd~~~~~~ 1043 (1131)
+-...-.. .......- .++ .-++++.+.++.+ ..+.+||+.+.+-
T Consensus 305 ~W~~~~~~~~~~~~R~~~-~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 305 KWFHCSTPGDSFSIRGGA-GLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEEeCCCCCCCCCCCCCc-EEE-EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 43221110 00001111 122 2367777777755 4689999987664
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=80.82 E-value=37 Score=35.99 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=66.9
Q ss_pred CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe------CCCeEEEEEecCCCc
Q 001178 370 GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF------TKHLIHLYTYQGSND 443 (1131)
Q Consensus 370 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~------~d~~i~vwd~~~~~~ 443 (1131)
..|++||..+.+-.. .-.+-.+.|++|.|..+.++++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 469999988766443 1234567899999998877888774 355788999987542
Q ss_pred cceeeeeec-----CcCCeeEEEEecCCCceEEEEEc-C--CCcEEEEe-CCCceeEE-ecCCccCeEEEeec
Q 001178 444 LCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCG-D--DKLIRVWD-LSGRKLFQ-FEGHEAPVYSVCPH 506 (1131)
Q Consensus 444 ~~~~~~~~~-----h~~~V~~l~~s~d~~~~~l~s~s-~--d~~i~iwd-~~~~~~~~-~~~h~~~v~~~~~~ 506 (1131)
. .+.+ -.++|..+.+..+...-+.+.|. . +..|..|| .+-..+.. .......|..+.+.
T Consensus 77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 1 2222 23678888875433321344433 2 33566776 43333322 22223455555443
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.58 E-value=1.2 Score=48.76 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=83.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.-+..-..++|.-+|..+++.+-..+.+.|||+.+..... + ..-..|.... +.|++-+..+
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---L--------------E~gg~~s~sl--l~wsKg~~el 132 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---L--------------ESGGTSSKSL--LAWSKGTPEL 132 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH---H--------------hccCcchHHH--HhhccCCccc
Confidence 3445556677777777666667778899999998653321 0 0111233333 7899999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~ 489 (1131)
+.+...|.+.|++..+.+... ....|..+++++++.+.+. .+.++.|..+.+-...|..
T Consensus 133 ~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~qeget 191 (615)
T KOG2247|consen 133 VIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTTQEGET 191 (615)
T ss_pred cccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhhhccce
Confidence 999999999999988765432 2333999999999999886 7888888777665543433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1131 | ||||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 7e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 8e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-07 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-07 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-05 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-06 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 5e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 6e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-04 |
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1131 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.79 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.75 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.72 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.64 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.64 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.63 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.63 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.54 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.54 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.54 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.52 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.52 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.52 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.5 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.5 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.49 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.48 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.47 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.45 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.44 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.38 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.35 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.34 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.27 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.26 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.25 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.22 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.19 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.17 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.13 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.09 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.07 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.06 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.03 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.01 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.99 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.96 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.96 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.94 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.93 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.93 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.9 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.9 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.79 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.76 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.72 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.7 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.69 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.69 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.61 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.6 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.59 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.53 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.51 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.51 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.51 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.49 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.49 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.48 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.42 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.41 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.39 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.28 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.26 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.24 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.17 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.17 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.15 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.12 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.08 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.02 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.01 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.01 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.95 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.83 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.83 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.8 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.72 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.7 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.65 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.63 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.58 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.54 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.54 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.52 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.51 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.46 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.46 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.38 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.38 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.3 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.24 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.21 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.07 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.99 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.99 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.96 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.92 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.81 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.79 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.71 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.69 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.62 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.61 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.56 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.43 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.3 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.29 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.22 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.09 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.0 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.87 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.79 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.75 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.74 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.69 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.6 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.55 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.43 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.39 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.96 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.8 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 94.55 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.29 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.46 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.1 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.76 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.54 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.95 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.8 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.8 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.63 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 89.65 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 85.88 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 85.88 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 83.42 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 82.7 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 81.25 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-66 Score=631.36 Aligned_cols=562 Identities=23% Similarity=0.374 Sum_probs=479.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|.+++|+|||++|
T Consensus 14 GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg~~l 72 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDGQTI 72 (577)
T ss_dssp CCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTSSEE
T ss_pred CCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCCCEE
Confidence 59999999999999984 999999999999995 555543 477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVC 504 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~ 504 (1131)
|+++.|++|+|||+. ++.+ ..+.+|...|.+++|+||++ +|++++.|+.+++|+..........+|...|.++.
T Consensus 73 as~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (577)
T 2ymu_A 73 ASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA 146 (577)
T ss_dssp EEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEE
T ss_pred EEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCceeeee
Confidence 999999999999964 4433 46889999999999999999 89999999999999987888888899999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI 584 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 584 (1131)
+.+ ++..+++++.++.+++|+... ........+...+..+.++|+++++++++. ++.|++||. +++.+..+.
T Consensus 147 ~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~ 218 (577)
T 2ymu_A 147 FSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLT 218 (577)
T ss_dssp ECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEE
T ss_pred eec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEe
Confidence 865 557899999999999998654 445556677888999999999999999986 899999995 577888888
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|.. .+.+++|+|++.+|++++.|+.|++||.. ++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+....
T Consensus 219 ~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~ 294 (577)
T 2ymu_A 219 GHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ 294 (577)
T ss_dssp CCSS-CEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred cCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc
Confidence 8765 89999999999999999999999999964 56666666554 48999999999999999999999999985322
Q ss_pred chhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcce
Q 001178 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1131)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w 744 (1131)
...
T Consensus 295 --~~~--------------------------------------------------------------------------- 297 (577)
T 2ymu_A 295 --LLQ--------------------------------------------------------------------------- 297 (577)
T ss_dssp --EEE---------------------------------------------------------------------------
T ss_pred --EEE---------------------------------------------------------------------------
Confidence 000
Q ss_pred eeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccc
Q 001178 745 ELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLM 824 (1131)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 824 (1131)
.+ .+|...|.+++|+|++..+++++.|+.+++|+...... .
T Consensus 298 --------------~~---~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~----------------------~ 338 (577)
T 2ymu_A 298 --------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL----------------------Q 338 (577)
T ss_dssp --------------EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE----------------------E
T ss_pred --------------EE---ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee----------------------E
Confidence 00 22778899999999999999999999999998543110 0
Q ss_pred ccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 825 TNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 825 ~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
. + .+|...+.+++|+|+|++|++++ ++.|++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++||
T Consensus 339 ~--~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 339 T--L-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN 413 (577)
T ss_dssp E--E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred E--E-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 0 1 15788999999999999999998 899999995 5678889999999999999999 899999999999999999
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.... ..+ +...+.+++|+|++++|+++
T Consensus 414 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~-----~~~-~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 414 R-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQT-----LTG-HSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEE-----EEC-CSSCEEEEEECTTSCEEEEE
T ss_pred C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEE-----EcC-CCCCEEEEEEcCCCCEEEEE
Confidence 5 6778889999999999999999999999999999999999754 22211 112 23789999999999999986
Q ss_pred -eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCC
Q 001178 984 -HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQ 1062 (1131)
Q Consensus 984 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1062 (1131)
.|+.|++||. +++++..+.+| ...|++++|+|||++|++++.||.|++||+ +++.+..+.+ |..
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~----------h~~ 550 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSS 550 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC----------CSS
T ss_pred eCCCEEEEEcC-CCCEEEEEeCC---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC----------CCC
Confidence 5899999995 67888888776 789999999999999999999999999996 5777776654 334
Q ss_pred ccccEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1063 TVFPLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1063 ~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.|. +++|+| |+.+|+|++.|++|++||
T Consensus 551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 444 688999 678999999999999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-64 Score=608.77 Aligned_cols=573 Identities=14% Similarity=0.159 Sum_probs=457.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.+.+++|||||+ +||+++ ++.|+|||+.+++... ++.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 567889999999998 478877 5799999998776554 5789999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCceeEEecCCccCeE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~h~~~v~ 501 (1131)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .++.+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 9999999999999765533 2336789999999999999999 67777754 4788888 5667788999999999
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+++|+|... ..|++++.|++|++||....+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 999976432 36999999999999999988888889999999999999999999999986 9999999999999888
Q ss_pred EEe-------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-CCCcceEEEcCCCCEEEEEECC
Q 001178 582 TYI-------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 582 ~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+.. ......+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~-~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccC-CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 874 444 4899999999999999999999999999999998888765421 112344555 67889999999
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.+++|+...+. ...
T Consensus 304 ~~i~~~~~~~~~-~~~---------------------------------------------------------------- 318 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQ---------------------------------------------------------------- 318 (611)
T ss_dssp CCEEEEETTTTE-EEE----------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cce----------------------------------------------------------------
Confidence 999999975541 000
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeec
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1131)
.+ .+|...|.+++|+|+|+.|++++.|+++++||+..+
T Consensus 319 -------------------------~~---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~-------------- 356 (611)
T 1nr0_A 319 -------------------------VR---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------------- 356 (611)
T ss_dssp -------------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------
T ss_pred -------------------------EE---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC--------------
Confidence 00 237889999999999999999999999999987542
Q ss_pred eeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE---EeCCCCCeeEEEEeCCCCcEE
Q 001178 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT---FMSPPPASTFLAFHPQDNNII 890 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~l 890 (1131)
.... .+...|...|.+++|++++.++..+.|+++++|++.++..... .........+++|+| ++.++
T Consensus 357 --------~~~~-~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~ 426 (611)
T 1nr0_A 357 --------ISNR-VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIA 426 (611)
T ss_dssp --------CEEE-CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCE
T ss_pred --------ceee-ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEE
Confidence 1111 1123588999999999887655444499999999887543210 011234568899999 77777
Q ss_pred EEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceE
Q 001178 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETR 970 (1131)
Q Consensus 891 a~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~ 970 (1131)
+++ .++.+++|+ .++ +..+. |...+.+++|+|||++|++++.|++|++||+.++..... .. ..+...|.+
T Consensus 427 ~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~---~~--~~h~~~v~~ 496 (611)
T 1nr0_A 427 VAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV---KT--IVHPAEITS 496 (611)
T ss_dssp EEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE---EE--EECSSCEEE
T ss_pred EEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeee---ec--cCCCCceEE
Confidence 666 567899998 444 44554 888999999999999999999999999999987543211 11 123478999
Q ss_pred EEEcCCCcEEEEEe-CCeEEEEeCCC-ccccee-eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee--
Q 001178 971 VQFHSDQVRLLVNH-ETQLAIYDGSK-MECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC-- 1045 (1131)
Q Consensus 971 v~~s~d~~~l~~~~-d~~i~vwd~~~-~~~~~~-~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-- 1045 (1131)
++|+|||++|++++ |+.|++|++.+ ++.+.. ... .|...|++++|+|||++|++|+.|++|++||+.++....
T Consensus 497 v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~--~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~ 574 (611)
T 1nr0_A 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT--FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII 574 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee--ecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccch
Confidence 99999999999864 89999999987 555443 122 248899999999999999999999999999998875322
Q ss_pred EecCCccccCCCCCC-CCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1046 RIAPSAYMSQASPNS-SQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1046 ~~~~~~~~~~~~~~~-~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.+.. | ...| .+++|+| ++. |++++.|++|++|++.
T Consensus 575 ~~~~----------h~~~~v--~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 575 IKGA----------HAMSSV--NSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTS----------STTSCE--EEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred hhcc----------CcccCe--eEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 2221 2 2334 4788998 455 9999999999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-62 Score=594.66 Aligned_cols=562 Identities=15% Similarity=0.182 Sum_probs=449.7
Q ss_pred CccccccCCCCCcccccCCC-------cccceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccccc
Q 001178 316 SVDEATYPVPSQQATWSLDD-------LPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKP 387 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~-------~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~ 387 (1131)
.+..++|+|+|+.++...+. .......++ +|.+.|++++|||||+ +||+|+.||+|+|||+.+++....
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-- 96 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-- 96 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE--
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee--
Confidence 34457888888644332221 123344455 5999999999999998 599999999999999976654321
Q ss_pred ceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEe
Q 001178 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463 (1131)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s 463 (1131)
..+.+|.+.|.+++|+|||++||+++.+ ++|++||. ++... .+.+|...|++++|+
T Consensus 97 ---------------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~---~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 97 ---------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNG---NLTGQARAMNSVDFK 156 (611)
T ss_dssp ---------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCB---CCCCCSSCEEEEEEC
T ss_pred ---------------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcc---eecCCCCCceEEEEC
Confidence 1466899999999999999999998865 47888874 44333 578999999999999
Q ss_pred cCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec----
Q 001178 464 YPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---- 538 (1131)
Q Consensus 464 ~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---- 538 (1131)
|++.. .|++|+.|++|++|| ..++++..+.+|...|.+++|+| ++++|++++.|++|++||+.+++....+.
T Consensus 157 p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 157 PSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 233 (611)
T ss_dssp SSSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred CCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccc
Confidence 99874 599999999999999 77888899999999999999965 56899999999999999999888777663
Q ss_pred ---CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC--CceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 539 ---APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK--KSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 539 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.|...|.+++|+|+|++|++++. |+.|++||+.+++.+..+..+.. .....+.| +++.+++++.|+.++
T Consensus 234 ~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDGTKIASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFIN 307 (611)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEE
T ss_pred cccccCCCEEEEEECCCCCEEEEEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEE
Confidence 68889999999999999999987 99999999999999888865422 13344555 678899999999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccce
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVV 693 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1131)
+|+...++....+..|. ..|.+++|+|+|++|++++.|+.|++||+.++.. ...+
T Consensus 308 ~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~-~~~~---------------------- 362 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF---------------------- 362 (611)
T ss_dssp EEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS----------------------
T ss_pred EEeCCCCCcceEEcCCC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-eeec----------------------
Confidence 99999998777766554 4899999999999999999999999999876511 0000
Q ss_pred ecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEE
Q 001178 694 TTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARL 773 (1131)
Q Consensus 694 ~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 773 (1131)
...|...|.++
T Consensus 363 ---------------------------------------------------------------------~~~h~~~v~~~ 373 (611)
T 1nr0_A 363 ---------------------------------------------------------------------PDVHATMITGI 373 (611)
T ss_dssp ---------------------------------------------------------------------SCSCSSCEEEE
T ss_pred ---------------------------------------------------------------------ccCCcceEEEE
Confidence 02277889999
Q ss_pred EeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC
Q 001178 774 LYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853 (1131)
Q Consensus 774 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d 853 (1131)
+|++++ .+++++.|+.+++|+............ .. .......+++|+|+|+.++++.+
T Consensus 374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~-----------------~~----~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAV-----------------AN----KLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCC-----------------EE----ECSSCEEEEEECTTSSCEEEEES
T ss_pred EECCCC-cEEEEEcCCceEEeecCCcccccccee-----------------ee----ecCCCCcEEEEeCCCcEEEEEeC
Confidence 999766 688899999999998765322111000 00 12345678999999999988889
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecccccCeeEEEEccCCCE
Q 001178 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
+.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.++.. +.. .+|.+.|++++|||||++
T Consensus 432 ~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~ 505 (611)
T 1nr0_A 432 KHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAF 505 (611)
T ss_dssp SEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSE
T ss_pred ceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCE
Confidence 9999999 344 55554 778899999999 899999999999999999987654 233 789999999999999999
Q ss_pred EEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccc--eeeecCCC
Q 001178 932 LVSSGSDAQLIFWNTDT-WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECI--RQWVPQDV 1007 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~-~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~--~~~~~~~~ 1007 (1131)
|++++.|++|++|++.+ ++.... .....+...|.+++|+|||++|++++ |+.|++|++.++... ..+ ..
T Consensus 506 las~s~d~~v~~w~~~~~~~~~~~----~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---~~ 578 (611)
T 1nr0_A 506 LVATDQSRKVIPYSVANNFELAHT----NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---GA 578 (611)
T ss_dssp EEEEETTSCEEEEEGGGTTEESCC----CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---TS
T ss_pred EEEEcCCCCEEEEEcCCCCceeee----eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---cc
Confidence 99999999999999987 332111 01222457899999999999999865 999999999886532 232 23
Q ss_pred C-CCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 1008 L-SSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 1008 ~-~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
| ...|++++|+||++ |++++.|++|++|++.
T Consensus 579 h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 579 HAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp STTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 4 68999999999999 9999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-62 Score=592.60 Aligned_cols=527 Identities=23% Similarity=0.385 Sum_probs=450.7
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++++++ +|...|++++|||||+ +||+|+.|++|+|||+. ++.+. .+.+|...|.+++|
T Consensus 48 ~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~ 106 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAF 106 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEE
T ss_pred CEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEE
Confidence 344455 4999999999999998 59999999999999964 44443 46799999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
+||+++|++++.|+.+++|+..... .....+|...|.++.|+|++. .+++++.++.+++|+...........|.
T Consensus 107 s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (577)
T 2ymu_A 107 SPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHS 180 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSCEEEEEECCS
T ss_pred CCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecccccceeccccceeeeeeccCCC
Confidence 9999999999999999999976543 235678999999999999999 7899999999999998888888888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
..|.++++.+ ++.++++++.|+.|++||. +.+....+..+...|.+++|+|++++|++++. ++.|++||. ++
T Consensus 181 ~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~i~~w~~-~~ 252 (577)
T 2ymu_A 181 SSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKTVKLWNR-NG 252 (577)
T ss_dssp SCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECT-TS
T ss_pred cceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCEEEEEeC-CC
Confidence 9999999865 5679999999999999996 45666678888999999999999999999986 899999995 57
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
+.+..+.+|.. .+.+++|+|+++.+++++.|+.|++|+.. ++.+..+..+. ..|.+++|+|+++++++++.|+.|+
T Consensus 253 ~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 253 QLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp CEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCC--CCeEEEEECCCCCEEEEEeCCCeEE
Confidence 77888888665 89999999999999999999999999964 56666665544 4899999999999999999999999
Q ss_pred EEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecccc
Q 001178 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1131)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 737 (1131)
+|+..... ..
T Consensus 329 ~w~~~~~~--~~-------------------------------------------------------------------- 338 (577)
T 2ymu_A 329 LWNRNGQH--LQ-------------------------------------------------------------------- 338 (577)
T ss_dssp EEETTSCE--EE--------------------------------------------------------------------
T ss_pred EEeCCCCe--eE--------------------------------------------------------------------
Confidence 99964330 00
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeec
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1131)
.+ ..|...+.+++|+|+|..+++++.|+.+++|+... .
T Consensus 339 ---------------------~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-------~----------- 376 (577)
T 2ymu_A 339 ---------------------TL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------Q----------- 376 (577)
T ss_dssp ---------------------EE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-------C-----------
T ss_pred ---------------------EE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-------C-----------
Confidence 00 12677889999999999999999999999998422 1
Q ss_pred CCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC
Q 001178 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1131)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 896 (1131)
.+.. + .+|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|.+++|+| ++++|++++.|
T Consensus 377 -----~~~~-~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d 447 (577)
T 2ymu_A 377 -----LLQT-L-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDD 447 (577)
T ss_dssp -----EEEE-E-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred -----EEEE-e-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCC
Confidence 1110 1 15788999999999999999998 899999995 5678889999999999999999 89999999999
Q ss_pred CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 897 STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +.... ..+ +...|.+++|+||
T Consensus 448 ~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~~-----~~~-h~~~v~~l~~s~d 519 (577)
T 2ymu_A 448 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT-----LTG-HSSSVRGVAFSPD 519 (577)
T ss_dssp SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEEE-----EEC-CSSCEEEEEECTT
T ss_pred CEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEEE-----EeC-CCCCEEEEEEcCC
Confidence 99999996 5678889999999999999999999999999999999999653 33222 122 3378999999999
Q ss_pred CcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 977 QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 977 ~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
+++|+++ .|+.|++||. +++++..+.+| ...|++++|+|||++|++++.|++|++||
T Consensus 520 g~~l~s~~~dg~v~lwd~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECT-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeC-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999986 4899999996 57888888776 88999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=643.65 Aligned_cols=616 Identities=13% Similarity=0.160 Sum_probs=501.5
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||++
T Consensus 612 ~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 671 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDDSY 671 (1249)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred ecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCCCE
Confidence 35999999999999998 58999999999999999988765 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|.+
T Consensus 672 l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 672 IATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 9999999999999999987554 678999999999999976555899999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------------CceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------------GLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ ++.+
T Consensus 749 ~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v 821 (1249)
T 3sfz_A 749 CRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKV 821 (1249)
T ss_dssp EEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEE
T ss_pred EEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcE
Confidence 99965 5679999999999999999887766544321 22678899999999999987 6789
Q ss_pred EEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEE
Q 001178 570 VEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 570 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~ 649 (1131)
.+||..++..+..+...+...+.+++|+|++.++++++.||.|++||+.++..+..+..|.. .|.+++|+|+++++++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEE
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEE
Confidence 99999999988888755666899999999999999999999999999999999888876554 8999999999999999
Q ss_pred EECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCC
Q 001178 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 729 (1131)
++.||.|++|++.+.... ........ .. ..+.+ ..
T Consensus 900 ~s~dg~v~vw~~~~~~~~-~~~~~~~~-~~--------------~~~~~-----------------------------~~ 934 (1249)
T 3sfz_A 900 ASDDQTIRVWETKKVCKN-SAIVLKQE-ID--------------VVFQE-----------------------------NE 934 (1249)
T ss_dssp EETTSCEEEEEHHHHHSC-CSSSEEEE-EE--------------EEEET-----------------------------TE
T ss_pred EeCCCeEEEEEcccccee-eeecccce-ee--------------EEEcC-----------------------------CC
Confidence 999999999997543110 00000000 00 00111 11
Q ss_pred CceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccce
Q 001178 730 KPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATA 809 (1131)
Q Consensus 730 ~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 809 (1131)
..++.....+.+.++..... .... .+...+.+++++|++..+++++.+|.+++|++..+.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~--------- 994 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTG----QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR--------- 994 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSC----CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------
T ss_pred cEEEEecCCcceEEEecCcc----eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc---------
Confidence 22223333334444433221 1110 135679999999999999999999999999875421
Q ss_pred eeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 810 AVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 810 ~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
.... ..+|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++.
T Consensus 995 -------------~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~~ 1057 (1249)
T 3sfz_A 995 -------------VFSS--GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DSR 1057 (1249)
T ss_dssp -------------CEEE--CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SSE
T ss_pred -------------eeee--cccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CCc
Confidence 1111 125889999999999999999998 8999999999988764 457889999999999 654
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++.... ..+ +...+
T Consensus 1058 -l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-----l~~-h~~~v 1130 (1249)
T 3sfz_A 1058 -LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-----LKG-HNGCV 1130 (1249)
T ss_dssp -EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-----CCC-CSSCE
T ss_pred -EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-----ecc-CCCcE
Confidence 67899999999999999999999999999999999999999999999999999999998764322 222 33789
Q ss_pred eEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeec------CCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 969 TRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVP------QDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~------~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
.+++|+|+|.+|++++ ||.|++||+.+++.+..+.+ ...|...|++++|+|||++|++++ |.|++||+.++
T Consensus 1131 ~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208 (1249)
T ss_dssp EEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC
Confidence 9999999999999875 89999999999988776511 123478999999999999999885 89999999999
Q ss_pred ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1042 RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.+..+..+ ...+. ++.|+| ++.+|++++.||.|++|++.+
T Consensus 1209 ~~~~~~~~~----------~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1209 DSSQTFYTN----------GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp BCCCCCCCS----------SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ceeeeeecc----------CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 887665432 22233 478888 678999999999999999853
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=558.82 Aligned_cols=559 Identities=11% Similarity=0.184 Sum_probs=472.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC----cccccccceeecccccccceeceeccCCCCC-EEEEEEcC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR----ERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS-VSRVAWSP 419 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~sp 419 (1131)
.|.+.|++++|||||+ +||+|+ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 3889999999999998 477777 889999999987 4443 47799999 99999999
Q ss_pred --CCCEEEEEeCCCeEEEEEecCCC-----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCc
Q 001178 420 --DGNFIGVAFTKHLIHLYTYQGSN-----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGR 488 (1131)
Q Consensus 420 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~ 488 (1131)
|+++||+|+.||+|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999997651 1223346788999999999999999 78888887 7899999 677
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc---eEEEEEEccC-CCEEEEEeecCC
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL---WCTTMLYSAD-GSRLFSCGTSKE 564 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~~~~~~~~ 564 (1131)
.+..+.+|...|.+++|++... ..+++++.|+.|++||+.+.+....+..|.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET---
T ss_pred cceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC---
Confidence 8899999999999999976432 3899999999999999999998888988888 9999999999 999999986
Q ss_pred CCceEEEEeCCCCeeeEEE-e---cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC--CCCcceE
Q 001178 565 GDSHLVEWNESEGALKRTY-I---GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG--LPSLPRL 638 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~v 638 (1131)
++.|++||+.+++.+..+ . .| ...+.+++|+ ++.++++++.|+.|++||+.+++.+..+..+.. ...+.++
T Consensus 228 -dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (615)
T 1pgu_A 228 -DRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 304 (615)
T ss_dssp -TCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEE
T ss_pred -CCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEE
Confidence 899999999999999888 4 44 4489999999 999999999999999999999999888876521 1256777
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
.|+ ++.++++++.||.|++|++.++ .....+.+|...+... .+ |
T Consensus 305 ~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~~-------------~~-~-------------------- 348 (615)
T 1pgu_A 305 VAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITAL-------------TV-N-------------------- 348 (615)
T ss_dssp EEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEEE-------------ET-T--------------------
T ss_pred EeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEEE-------------Ee-c--------------------
Confidence 775 8999999999999999998775 3444444443332210 11 1
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
+ +++++.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++..
T Consensus 349 ---------~---l~~~~~dg~i~~w~~~---------~~~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 349 ---------P---LISGSYDGRIMEWSSS---------SMH----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp ---------T---TEEEETTSCEEETTTT---------EEE----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred ---------C---cEEECCCCeEEEEEch---------hhc----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 1 7889999999999986 122 348899999999 7788999999999999998754
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCee
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAST 878 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 878 (1131)
... ...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.
T Consensus 403 ~~~-------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 450 (615)
T 1pgu_A 403 HEF-------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGS 450 (615)
T ss_dssp EEC-------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred Ccc-------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCce
Confidence 211 125788999999999999888999999999999998887 788899
Q ss_pred EEEEeCCCCcEEEEEeC-CCcEEEEEeecceeE-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001178 879 FLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVK-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 879 ~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
+++|+ +.+|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus 451 ~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-- 525 (615)
T 1pgu_A 451 AVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS-- 525 (615)
T ss_dssp EEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC--
T ss_pred EEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE--
Confidence 99998 679999999 999999999988766 77889999999999999999999999999999999998765332
Q ss_pred eecCCCCCCCCceEEEEcC----------CCcEEEEEe-CCeEEEEeCCCc-ccceeeecCCCCCCCeEEEEEccCCCEE
Q 001178 957 IQLPAGKLPVGETRVQFHS----------DQVRLLVNH-ETQLAIYDGSKM-ECIRQWVPQDVLSSPISSAAYSCNSQLI 1024 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~----------d~~~l~~~~-d~~i~vwd~~~~-~~~~~~~~~~~~~~~v~~i~~s~dg~~l 1024 (1131)
..+.+...+.+++|+| ++.+|++++ |+.|++||+.++ +.+..+..| ...|++++|+||++ |
T Consensus 526 ---~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 526 ---RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-L 598 (615)
T ss_dssp ---CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-E
T ss_pred ---eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-e
Confidence 2232448899999999 999999875 899999999987 677766655 88999999999999 9
Q ss_pred EEEecCCcEEEEECCC
Q 001178 1025 YATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1025 ~s~~~dg~i~vwd~~~ 1040 (1131)
++++.||.|++|++++
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=590.38 Aligned_cols=571 Identities=18% Similarity=0.264 Sum_probs=470.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|++++|+|||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|+.|+||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 577999999999999999999999999999999999987544 6789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+++.+..+.+|...|.+++|++..++.++++++.||.|++||++++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 88999999999999999999998777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEeccc------------CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFR------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG 630 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 630 (1131)
++.|++||+.+++....+.... ...+.+++|+|++..+++++ ++.+.+||+.++..+..+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999988777664321 22577899999999999887 68999999999988877653 3
Q ss_pred CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCC
Q 001178 631 GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSS 710 (1131)
Q Consensus 631 ~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~ 710 (1131)
+...|.+++|+|+++++++++.||.|++|++.++. ....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeec---------------------------------------
Confidence 34489999999999999999999999999987651 11111
Q ss_pred CCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecce
Q 001178 711 PARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGV 790 (1131)
Q Consensus 711 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 790 (1131)
.+|...|.+++|+|+|..+++++.||.
T Consensus 879 -----------------------------------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 879 -----------------------------------------------------RGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp -----------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------CCCccceEEEEECCCCCEEEEEeCCCe
Confidence 126677888888888888888888888
Q ss_pred eeEEeecCCCCCCCCccceee------------------eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 791 QKLWKWNRTEQNPSGKATAAV------------------APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 791 i~iw~~~~~~~~~~~~~~~~~------------------~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
+++|++............... ...++...++.... .+...+.+++|+|+++++++++
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~sp~g~~l~~g~ 980 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY-----LPEAQVSCCCLSPHLEYVAFGD 980 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE-----ECCSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE-----cccCcEEEEEEcCCCCEEEEEc
Confidence 888886543211110000000 11223333333222 2466799999999999999999
Q ss_pred -CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCE
Q 001178 853 -GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
+|.|++||+.+++....+.+|...|++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~ 1057 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-R 1057 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-E
T ss_pred CCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-c
Confidence 89999999999999999999999999999999 8999999999999999999998876 466899999999999975 6
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~ 1010 (1131)
+++++.|+.|++||+.+++...... + +...+.+++|+|++.+++++ .|+.|++||+.+++.+..+..| ..
T Consensus 1058 l~~~~~dg~v~vwd~~~~~~~~~~~-----~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~ 1128 (1249)
T 3sfz_A 1058 LLSWSFDGTVKVWNVITGRIERDFT-----C-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NG 1128 (1249)
T ss_dssp EEEEESSSEEEEEETTTTCCCEEEE-----C-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SS
T ss_pred EEEEECCCcEEEEECCCCceeEEEc-----c-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CC
Confidence 7899999999999999877543322 1 23679999999999999986 4899999999999998888776 78
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEE
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~i 1090 (1131)
.|++++|+|||++|++++.||.|++||+.+++.+..+........ ...|...|. .++|+| ++.+|++++ |+|++
T Consensus 1129 ~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~v 1202 (1249)
T 3sfz_A 1129 CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-TATHGGWVT--DVCFSP-DSKTLVSAG--GYLKW 1202 (1249)
T ss_dssp CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--------CCSCCC--EEEECT-TSSCEEEES--SSEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccc-ccccCceEE--EEEECC-CCCEEEECC--CeEEE
Confidence 999999999999999999999999999999988766533221111 112334444 689999 667888886 89999
Q ss_pred EecCCCccccc
Q 001178 1091 IEPSETERKWG 1101 (1131)
Q Consensus 1091 W~~~~~~~~w~ 1101 (1131)
||+.+++....
T Consensus 1203 wd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1203 WNVATGDSSQT 1213 (1249)
T ss_dssp BCSSSCBCCCC
T ss_pred EECCCCceeee
Confidence 99998875433
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-56 Score=556.01 Aligned_cols=599 Identities=10% Similarity=0.102 Sum_probs=443.1
Q ss_pred eeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 341 ~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
...++|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 34467999999999999998 69999999999999988765432 235788999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee---------
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL--------- 490 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~--------- 490 (1131)
|++|++++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .+++..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999987654 343 778999999999999 899999999999999 444432
Q ss_pred --EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------------------CceEEEEEEc
Q 001178 491 --FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------------------GLWCTTMLYS 550 (1131)
Q Consensus 491 --~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~s 550 (1131)
..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++......+..+ ...|.+++|+
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 234679999999999874 34689999999999 9999998877776654 3579999999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-----cc------------cCCceEEEEEeC----CC-CEEEEEEc
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-----GF------------RKKSAGVVQFDT----TR-NRILAAGE 608 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~------------~~~~v~~~~~s~----~~-~~l~~~~~ 608 (1131)
|+|++|++++. |+.|++||+++++.+.... .| +...|.+++|++ ++ ..+++|+.
T Consensus 221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999987 9999999999988765421 12 123689999964 43 45667766
Q ss_pred C-----CcEEEEEcC------------------CCeEEEEEeccCCCCCcceEEEcC----------CCCEEEEEECCCc
Q 001178 609 D-----NQIKFWDMD------------------NVNMLTSTEAEGGLPSLPRLRFNK----------EGNLLVVTTADQG 655 (1131)
Q Consensus 609 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~v~~sp----------~~~~l~~~~~dg~ 655 (1131)
| +.+.+|++. +.+....+... +...+..+.+.+ +...+++++.||.
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 5 378899852 22233333321 223677777655 3447888999999
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
|++|++.++.........+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~------------------------------------------------------------ 395 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQ------------------------------------------------------------ 395 (902)
T ss_dssp EEEEETTTCCEECCGGGSCG------------------------------------------------------------
T ss_pred EEEEECCCCCcccccccCCC------------------------------------------------------------
Confidence 99999865521111000000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. + ..|...|.++++++... ++|+......
T Consensus 396 ---------~--------------l---~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~-------------- 424 (902)
T 2oaj_A 396 ---------N--------------L---SWLRPLATTSMAASVPN-----------KLWLGALSAA-------------- 424 (902)
T ss_dssp ---------G--------------G---TTBTTBEEEEEEEEEEH-----------HHHHHHHHTT--------------
T ss_pred ---------c--------------c---cccCCCeeEEEEEEcCH-----------HHHHHHHhcc--------------
Confidence 0 0 11445677777654322 2343211000
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeE----EE--Ee-----CCCCCeeEEEEe
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVM----TT--FM-----SPPPASTFLAFH 883 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s 883 (1131)
..+. ....+|...+.+++|+||+++|++|+ |++|++||+.++... .. +. +|...|.+++|+
T Consensus 425 ---~~~~----~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs 497 (902)
T 2oaj_A 425 ---QNKD----YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA 497 (902)
T ss_dssp ---BCCC----CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred ---cCCC----CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence 0000 01125777788899999999999999 999999999887431 11 11 788899999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEeecc---------------------------------------------eeEEeeccccc
Q 001178 884 PQDNNIIAIGMEDSTIQIYNVRVD---------------------------------------------EVKTKLKGHQK 918 (1131)
Q Consensus 884 ~~~~~~la~g~~dg~I~iwd~~~~---------------------------------------------~~~~~~~~h~~ 918 (1131)
| ++++||+|+.||+|+||++.++ +++..+.+|.+
T Consensus 498 p-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 498 A-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 9 9999999999999999999876 24678889999
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEc-----CCC---cEEEEEe-CCeEE
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH-----SDQ---VRLLVNH-ETQLA 989 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~d~---~~l~~~~-d~~i~ 989 (1131)
.|++|+||||| +||+|+.|++|++||+.+........+......+...|.+++|+ ||| ++|++++ |+.|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 99999999999 99999999999999998866433222222221344789999999 886 7888864 99999
Q ss_pred EEeC---CCcccceeeecCC--CCCCCeEEEE-Ec----------------------cCCCEEEEEecCCcEEEEECCCC
Q 001178 990 IYDG---SKMECIRQWVPQD--VLSSPISSAA-YS----------------------CNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 990 vwd~---~~~~~~~~~~~~~--~~~~~v~~i~-~s----------------------~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
+||+ .+|+....+.++. .+..+|.+++ |+ +++.+|+++ +..|+||++.++
T Consensus 656 ~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 656 TYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred EEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 9999 7888888887763 2357787777 66 456555554 789999999999
Q ss_pred ceeeEecCCccccCCCCCCCCccccE-EEE------EcCCCCCeEEEEecCCcEEEEecCCCccccccccCCC
Q 001178 1042 RLRCRIAPSAYMSQASPNSSQTVFPL-VVT------SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~v~------~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
+...+...+. ..+..+ .+. |++ ++..|++++.||+|++|++.+.+..-.+..|..
T Consensus 734 k~~~k~~~~~----------~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 734 KSTHKGFKYP----------LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp CEEEEECSSC----------EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceeeEcccc----------eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence 8877663321 112211 124 555 567999999999999999998887655555443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=531.41 Aligned_cols=559 Identities=11% Similarity=0.126 Sum_probs=455.7
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCC----CccceeeeeecCcCC-eeEEEEec--CCCceEEEEEcCCC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS----NDLCQSLEIDAHVGG-VNDLAFSY--PNKQLCIVTCGDDK 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~-V~~l~~s~--d~~~~~l~s~s~d~ 478 (1131)
..|.+.|.+++|+|||++||+++ ++.|++||+.++ +.. ..+.+|... |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~---~~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV---VQFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE---EEECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc---eEEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 47889999999999999999998 789999999987 433 468899999 99999999 999 899999999
Q ss_pred cEEEEe-CCC--------ceeEEecCCccCeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEEecCCCceEE
Q 001178 479 LIRVWD-LSG--------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd-~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
.|++|| .++ +.+..+..|...|.+++|++ +++++++++.+ +.|++|| .......+..|...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 999999 444 67778889999999999965 56899999887 6888887 5567778888999999
Q ss_pred EEEEccCCC-EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC--ceEEEEEeCC-CCEEEEEEcCCcEEEEEcCCCe
Q 001178 546 TMLYSADGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 546 ~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|... .+.+++|+|+ ++++++++.||.|++||+.+++
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999998 7888875 899999999999999999875431 6999999999 9999999999999999999999
Q ss_pred EEEEEecc--CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 622 MLTSTEAE--GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 622 ~~~~~~~~--~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
.+..+... .+...|.+++|+ ++.++++++.|+.|++||+.++ +....+..+..... ....
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~---------~~~~------- 302 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLG---------NQQV------- 302 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGG---------GCEE-------
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCccc---------Ccee-------
Confidence 88887221 334489999999 9999999999999999999876 33332222210000 0000
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1131)
....+++..+++++.++.+++|++.... ....+ ..|...|.+++| |+
T Consensus 303 -----------------------~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~~~~~---~~~~~~v~~~~~-~~- 349 (615)
T 1pgu_A 303 -----------------------GVVATGNGRIISLSLDGTLNFYELGHDE-----VLKTI---SGHNKGITALTV-NP- 349 (615)
T ss_dssp -----------------------EEEEEETTEEEEEETTSCEEEEETTEEE-----EEEEE---CCCSSCEEEEET-TT-
T ss_pred -----------------------EEEeCCCCeEEEEECCCCEEEEECCCCc-----EEEEE---eCCCCCEEEEEe-cC-
Confidence 0001146788999999999999987521 11222 348899999999 88
Q ss_pred ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEE
Q 001178 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~v 858 (1131)
+++++.||.+++|++.. + . ..|...|.+++| +++..+++++ |+.|++
T Consensus 350 --l~~~~~dg~i~~w~~~~------------------------~-~----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~ 397 (615)
T 1pgu_A 350 --LISGSYDGRIMEWSSSS------------------------M-H----QDHSNLIVSLDN-SKAQEYSSISWDDTLKV 397 (615)
T ss_dssp --TEEEETTSCEEETTTTE------------------------E-E----CCCCSCEEEEEC-CSTTCCEEEETTTEEEE
T ss_pred --cEEECCCCeEEEEEchh------------------------h-c----CcccCceEEEEE-CCCcEEEEEeCCCCEEE
Confidence 99999999999997540 0 0 258899999999 5566777776 899999
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeC-
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS- 937 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~- 937 (1131)
||+.+++... .+.+++|+| ++.+++++ .++.+.+|+..+++.+..+. |...+++++|+ +++|++++.
T Consensus 398 ~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~ 465 (615)
T 1pgu_A 398 NGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEE 465 (615)
T ss_dssp TTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETT
T ss_pred EEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecC
Confidence 9987765433 688999999 88888877 88999999999998888877 88999999999 889999999
Q ss_pred CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeec-CCCCCCCeEEE
Q 001178 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVP-QDVLSSPISSA 1015 (1131)
Q Consensus 938 Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~-~~~~~~~v~~i 1015 (1131)
|+.|++||+.+++... ... ..+...+.+++|+|++++|+++ .|+.|++||+.+++.+..+.. | ...|+++
T Consensus 466 d~~i~~~~~~~~~~~~----~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~~ 537 (615)
T 1pgu_A 466 GNTIQVFKLSDLEVSF----DLK-TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR---TSKINAI 537 (615)
T ss_dssp TSCEEEEETTEEEEEE----ECS-SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC---SSCEEEE
T ss_pred CCeEEEEECCCccccc----ccc-CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC---CCceeEE
Confidence 9999999999854321 112 2234789999999999999987 489999999999999888765 4 8899999
Q ss_pred EEcc----------CCCEEEEEecCCcEEEEECCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec
Q 001178 1016 AYSC----------NSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT 1084 (1131)
Q Consensus 1016 ~~s~----------dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~ 1084 (1131)
+|+| ++++|++++.||.|++||+.++ +.+..+.. |...|. +++|+| ++. |++++.
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------h~~~v~--~l~~s~-~~~-l~s~~~ 603 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA----------HKDGVN--NLLWET-PST-LVSSGA 603 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS----------STTCEE--EEEEEE-TTE-EEEEET
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc----------CccceE--EEEEcC-CCC-eEEecC
Confidence 9999 9999999999999999999988 56555543 233344 688999 456 999999
Q ss_pred CCcEEEEecCC
Q 001178 1085 DGSVKVIEPSE 1095 (1131)
Q Consensus 1085 Dg~v~iW~~~~ 1095 (1131)
||+|++|++..
T Consensus 604 d~~v~iw~~~~ 614 (615)
T 1pgu_A 604 DACIKRWNVVL 614 (615)
T ss_dssp TSCEEEEEEC-
T ss_pred CceEEEEeeec
Confidence 99999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=522.67 Aligned_cols=587 Identities=10% Similarity=0.053 Sum_probs=422.4
Q ss_pred CccccccCCCCCcc----------cccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc
Q 001178 316 SVDEATYPVPSQQA----------TWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS 385 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~----------~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~ 385 (1131)
.|..++|+|+++.. +|... ..+....+.|...|++++|+| |+ +|++|+.|++|+|||+.+++.+..
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~--~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~ 94 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQ--QVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT 94 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECST--TCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCC--CcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE
Confidence 57778888888633 33322 234455567899999999999 87 699999999999999999876642
Q ss_pred ccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee--------eeeecCcCCe
Q 001178 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS--------LEIDAHVGGV 457 (1131)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------~~~~~h~~~V 457 (1131)
+. |.+.|++++|+|++++|++|+.||+|++||+.+++..... ..+.+|.++|
T Consensus 95 -------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 95 -------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp -------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred -------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 22 5678999999999999999999999999999987642100 2347899999
Q ss_pred eEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC------------------ccCeEEEeecccCCccEEEEEe
Q 001178 458 NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH------------------EAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 458 ~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
++++|+|++.. .+++|+.|+.| +|| .+++.+..+..| ...|.+++|+| ++.+|++++
T Consensus 155 ~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs 230 (902)
T 2oaj_A 155 VSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIH 230 (902)
T ss_dssp CEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEE
T ss_pred EEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEE
Confidence 99999997543 78999999999 999 777778777665 57799999965 568999999
Q ss_pred cCCeEEEEeCCCCceeEEec-----C-------------CCceEEEEEEc----cCC-CEEEEEeecCC-CCceEEEEeC
Q 001178 519 VDGKIKAWLYDNVGSRVDYD-----A-------------PGLWCTTMLYS----ADG-SRLFSCGTSKE-GDSHLVEWNE 574 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~-----~-------------~~~~v~~~~~s----~~g-~~l~~~~~~~~-~~~~i~iwd~ 574 (1131)
.||.|++||+++++...... . +...|.+++|+ |++ ..+++++.+.+ ....+.+|+.
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 99999999998876654311 1 23479999996 444 45556543211 1247888884
Q ss_pred C------------------CCeeeEEEecccCCceEEEEEeC----------CCCEEEEEEcCCcEEEEEcCCCeEEEEE
Q 001178 575 S------------------EGALKRTYIGFRKKSAGVVQFDT----------TRNRILAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 575 ~------------------~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
. +++..+.+.......+..+.+.+ +...+++++.||.|++|++.++......
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 2 22334444322334677777655 3347899999999999999877543221
Q ss_pred -----eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccc
Q 001178 627 -----EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLS 701 (1131)
Q Consensus 627 -----~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 701 (1131)
....+...|++++|++.. ..+|+.... .+.
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~-----------~~~w~~~~~--------~~~-------------------------- 425 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVP-----------NKLWLGALS--------AAQ-------------------------- 425 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEE-----------HHHHHHHHH--------TTB--------------------------
T ss_pred ccCCCcccccCCCeeEEEEEEcC-----------HHHHHHHHh--------ccc--------------------------
Confidence 111222345555554311 122321100 000
Q ss_pred ccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCce
Q 001178 702 KAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIG 781 (1131)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 781 (1131)
...|.+ .+|...+..++|+|++..
T Consensus 426 ---------------------------------------~~~~~l-----------------~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 426 ---------------------------------------NKDYLL-----------------KGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp ---------------------------------------CCCCSC-----------------CCSBCCCCCCCCCSEEEE
T ss_pred ---------------------------------------CCCCcc-----------------cCCcCCCCcccccccCcE
Confidence 000000 225666778899999999
Q ss_pred EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001178 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1131)
Q Consensus 782 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 860 (1131)
+++++.|++|++||+..+..... . .+... +...+..+|...|.+++|+|||++||+|+ ||+|+|||
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~-~--------~~~~~----l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd 516 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDN-A--------SFEVN----LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFK 516 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTT-B--------CEEEE----HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCccccCC-c--------eEEee----chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEE
Confidence 99999999999999876532100 0 00000 00001125888999999999999999999 89999999
Q ss_pred CCCc---------------------------------------------eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC
Q 001178 861 MMNF---------------------------------------------KVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895 (1131)
Q Consensus 861 ~~~~---------------------------------------------~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~ 895 (1131)
+.++ +++..+.+|.+.|++++||| +| +||+|+.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~ 594 (902)
T 2oaj_A 517 YEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYA 594 (902)
T ss_dssp EEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEET
T ss_pred ecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeC
Confidence 9876 34677889999999999999 88 9999999
Q ss_pred CCcEEEEEeecceeEE-----eec-ccccCeeEEEEc-----cCC---CEEEEEeCCCcEEEEEc---CCCceeeeeeee
Q 001178 896 DSTIQIYNVRVDEVKT-----KLK-GHQKHITGLAFS-----TNL---NILVSSGSDAQLIFWNT---DTWEKRKSIAIQ 958 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~dg---~~l~s~~~Dg~v~lwd~---~~~~~~~~~~~~ 958 (1131)
|++|+|||++++..+. .+. +|.+.|++|+|+ ||| .+|++++.|++|++||+ .+++......-.
T Consensus 595 D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~ 674 (902)
T 2oaj_A 595 AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI 674 (902)
T ss_dssp TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence 9999999998877654 233 899999999999 885 89999999999999999 666644332222
Q ss_pred cCCCCCCCCceEEE-Ec----------------------CCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEE
Q 001178 959 LPAGKLPVGETRVQ-FH----------------------SDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSA 1015 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~-~s----------------------~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i 1015 (1131)
.. ..+...+..++ |+ +++..|++ ++..++||++.++++.+....+ ...+.++
T Consensus 675 ~~-~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k~~~k~~~~---~~~~~~v 749 (902)
T 2oaj_A 675 TN-VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSKSTHKGFKY---PLAATGL 749 (902)
T ss_dssp EE-CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCCEEEEECSS---CEEEEEE
T ss_pred ee-cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccceEEEeCccccceeeEccc---ceeeeEE
Confidence 11 11124566665 55 45555544 4889999999999998877555 3455555
Q ss_pred ---E------EccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1016 ---A------YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1016 ---~------~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
. |+++|..|++++.||.|++|++.+++.+..+....
T Consensus 750 ~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 750 SYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 6 78999999999999999999999999988887543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-46 Score=471.03 Aligned_cols=553 Identities=13% Similarity=0.161 Sum_probs=416.5
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
.+.+ +|.+.|++++|||+|+ +||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~ 65 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred ceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeC
Confidence 3344 4999999999999998 58999999999999999987664 4668999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHE 497 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~ 497 (1131)
++++||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|+.|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 140 (814)
T 3mkq_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (814)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCC
Confidence 99999999999999999999987544 6788999999999999999 799999999999999 554 6677888999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC-ceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG-LWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||.
T Consensus 141 ~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~ 215 (814)
T 3mkq_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (814)
T ss_dssp SCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEET
T ss_pred CcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEEC
Confidence 99999999762 45799999999999999998888777766654 7899999999 9999999986 899999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC--EEEEEEC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTA 652 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~~~~~ 652 (1131)
.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++. +++++ .
T Consensus 216 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~ 291 (814)
T 3mkq_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASG-F 291 (814)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEE-E
T ss_pred CCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEE-e
Confidence 99999999988765 899999999999999999999999999999999888876654 799999999987 45544 5
Q ss_pred CCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCce
Q 001178 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPR 732 (1131)
Q Consensus 653 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 732 (1131)
++.+.+|++..+... ..++|+ +..+
T Consensus 292 ~~~~~~~~~~~~~~~--------------------------~~~~~~-----------------------------g~~~ 316 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPT--------------------------LSLDPV-----------------------------GKLV 316 (814)
T ss_dssp TTEEEEEECSCCSCC--------------------------EEECSS-----------------------------SEEE
T ss_pred CCCEEEEEcCCCCce--------------------------eEECCC-----------------------------CCEE
Confidence 667888987654211 023333 1112
Q ss_pred eccccCCCCc---------ceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCC
Q 001178 733 NLEDISDKTK---------PWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNP 803 (1131)
Q Consensus 733 ~~~~~d~~v~---------~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~ 803 (1131)
++++.+.... .|++..... ........ ..+...+.+++|+|+|+.+++++ ++.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~--- 388 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEP-LSLQTKEL---GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR--- 388 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSC-BCCCCEEE---CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE---
T ss_pred EECcccccceeeeeeecccccccccCcc-ceeeeecC---CCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc---
Confidence 2221111100 111111100 00001111 22566789999999999998887 8999999853210
Q ss_pred CCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEE
Q 001178 804 SGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAF 882 (1131)
Q Consensus 804 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 882 (1131)
..+...+.+++|+|||+++++++ +|+|++|+. +.+|...+.+++|
T Consensus 389 --------------------------~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~ 434 (814)
T 3mkq_A 389 --------------------------NKAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHS 434 (814)
T ss_dssp --------------------------EEEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSS
T ss_pred --------------------------ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCc
Confidence 01345678999999999999998 799999963 3457778899999
Q ss_pred eCCCC---cEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE------eCCCcEEEEEcCC-----
Q 001178 883 HPQDN---NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS------GSDAQLIFWNTDT----- 948 (1131)
Q Consensus 883 s~~~~---~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~------~~Dg~v~lwd~~~----- 948 (1131)
+| ++ .+|++++.|+.|++||+.+++.+..+..|.. .++|+|||++|+++ +.++.+.+|--..
T Consensus 435 s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (814)
T 3mkq_A 435 AI-DRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEA 510 (814)
T ss_dssp CC-CEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHH
T ss_pred Cc-cceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhh
Confidence 99 76 5788899999999999999999999988875 99999999999999 6666555654210
Q ss_pred ----------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCCCCCCeEEEEE
Q 001178 949 ----------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAY 1017 (1131)
Q Consensus 949 ----------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~ 1017 (1131)
+........... ...+.+..|. +..++... .+.+..+-. +. ...+... ..++..+.|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~----~~~i~s~~w~--~~~~i~~t~~~~~~~~~~--~~-~~~~~~~---~~~~~~~~~ 578 (814)
T 3mkq_A 511 ANNGNIDDSEGVDEAFDVLYEL----SESITSGKWV--GDVFIFTTATNRLNYFVG--GK-TYNLAHY---TKEMYLLGY 578 (814)
T ss_dssp HHHTCCBTTTBCTTTEEEEEEE----CSCCSEEEEE--TTEEEEECTTSEEEEEET--TE-EEEEEEC---SSCCEEEEE
T ss_pred hhccCCccccchhhheeeeeEe----ccEEEeeEEe--CCEEEEEcCCCeEEEEeC--Ce-eEEEEEC---CccEEEEEE
Confidence 000000000000 1334555664 33333332 344444321 11 1122222 456777888
Q ss_pred ccCCCEEEEEecCCcEEEEECCC
Q 001178 1018 SCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1018 s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.++++.++....++.+.+|++..
T Consensus 579 ~~~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 579 LARDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp EGGGTEEEEECTTCCEEEEECCH
T ss_pred EecCCEEEEEcCCCCEEEEEECc
Confidence 89999999999999999999763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=453.64 Aligned_cols=477 Identities=15% Similarity=0.212 Sum_probs=368.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.++|++++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999876544 6789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEcc-CCCEEEEEe
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 560 (1131)
| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..|...|.+++|+| ++..+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9 88999999999999999999965 5579999999999999999887 55567788889999999999 888999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. ++.|++||+.++.....+..++...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~ 234 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEE
Confidence 6 899999999999888888887766899999999 899999999999999999999999888876654 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
+|+|+++++++++.||.|++||..++ .....+..+... +...+++|+
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~-------------v~~~~~~~~------------------- 281 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLNVGLER-------------SWCIATHPT------------------- 281 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC-SEEEEECCSSSS-------------EEEEEECTT-------------------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEeecCCCc-------------EEEEEEccC-------------------
Confidence 99999999999999999999998776 222222211111 111123333
Q ss_pred cCCCccccCCCCc-eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee-EEee
Q 001178 719 NGADSAARGIEKP-RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK-LWKW 796 (1131)
Q Consensus 719 ~~~~~~~~~~~~~-~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~-iw~~ 796 (1131)
+.. +++.+.++.+.+|++.. ....+.++|+|..+++++.+.... ++..
T Consensus 282 ----------~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 331 (814)
T 3mkq_A 282 ----------GRKNYIASGFDNGFTVLSLGN--------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTA 331 (814)
T ss_dssp ----------CGGGEEEEEETTEEEEEECSC--------------------CSCCEEECSSSEEEEECCTTSCTTCEEEE
T ss_pred ----------CCceEEEEEeCCCEEEEEcCC--------------------CCceeEECCCCCEEEECcccccceeeeee
Confidence 221 23333344455554322 112345555665555544332110 0000
Q ss_pred cCCCCCCCCccceeeeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCC
Q 001178 797 NRTEQNPSGKATAAVAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPP 874 (1131)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~ 874 (1131)
.....|+...+....... ...+...+.+++|+|+|+++++++++.+.+|++....... .
T Consensus 332 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~ 392 (814)
T 3mkq_A 332 --------------VIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----F 392 (814)
T ss_dssp --------------ECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----E
T ss_pred --------------ecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----C
Confidence 000123333333221111 1245667899999999999999999999999987654433 3
Q ss_pred CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCC---CEEEEEeCCCcEEEEEcCCCce
Q 001178 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNL---NILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg---~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
+.+.+++|+| +++++|+++.+|.|++|+ .+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.
T Consensus 393 ~~i~~~~~sp-dg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~ 463 (814)
T 3mkq_A 393 GKCQDFVWGP-DSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTL 463 (814)
T ss_dssp EECSEEEECT-TSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCE
T ss_pred CceEEEEEeC-CCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcE
Confidence 4588999999 899999999999999995 456788899999999998 6899999999999999998765
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE------eCCeEEEEeC
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDG 993 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~vwd~ 993 (1131)
..... . ....++|+|||++|+++ .+..+.++..
T Consensus 464 ~~~~~-----~----~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 464 VRRID-----V----NAKDVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EEEES-----S----CEEEEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEEEe-----c----CCCEEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 43322 1 12389999999999998 6666666643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=412.22 Aligned_cols=283 Identities=22% Similarity=0.387 Sum_probs=261.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.++|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++|
T Consensus 106 gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~l 165 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKLL 165 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCEE
Confidence 5899999999999998 69999999999999999987664 477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ +|++|+.|++|++|| .++.++..+.+|...|.++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence 999999999999998876544 6789999999999999999 899999999999999 8899999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC--------------------CCEEEEEeecC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD--------------------GSRLFSCGTSK 563 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~--------------------g~~l~~~~~~~ 563 (1131)
+++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|+ |.+|++++.
T Consensus 241 ~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~-- 316 (410)
T 1vyh_C 241 RPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR-- 316 (410)
T ss_dssp EEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--
T ss_pred EEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--
Confidence 985 46689999999999999999999988899999999999999996 678999986
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
|+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|+
T Consensus 317 --D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~ 391 (410)
T 1vyh_C 317 --DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKT 391 (410)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSS
T ss_pred --CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCC
Confidence 89999999999999999998766 899999999999999999999999999999999888876654 7999999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
+.+|++|+.||.|++|++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=353.78 Aligned_cols=290 Identities=19% Similarity=0.274 Sum_probs=259.1
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
..+++ +|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34445 5999999999999998 69999999999999999887654 356899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|+|++||+|+.|+.|++||+.++.. ......+.+|.+.|.++.|++++. +++++.|++|++|| .+++.+..+.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233456789999999999999875 88999999999999 888999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.+.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+++
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~ 257 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRA 257 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTT
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCC
Confidence 99999999975 5579999999999999999999988899999999999999999999999986 89999999999
Q ss_pred CeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
++.+..+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++|+.|+.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSC
T ss_pred CcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCcc
Confidence 98887775322 23689999999999999999999999999999998888876654 8999999999999999999999
Q ss_pred EEEEe
Q 001178 656 IKILA 660 (1131)
Q Consensus 656 i~iw~ 660 (1131)
|++||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=355.83 Aligned_cols=293 Identities=19% Similarity=0.255 Sum_probs=261.4
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
..+++ +|.+.|++++|+|+++ +||+|+.||+|+|||..+++... .+..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEEC
Confidence 44455 5999999999999998 59999999999999998877654 355788899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCc---cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSND---LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
|+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .|++++.|++|++|| .+++.+..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999865421 223346778999999999999999 799999999999999 8899999999
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
+|...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.+|++++. |+.|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 9999999999998888899999999999999999999988899999999999999999999999986 899999999
Q ss_pred CCCeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 575 SEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 575 ~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+.++.+..+..+. ...+.+++|+|++.++++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCC
Confidence 9988877776432 23678999999999999999999999999999998888775544 89999999999999999999
Q ss_pred CcEEEEe
Q 001178 654 QGIKILA 660 (1131)
Q Consensus 654 g~i~iw~ 660 (1131)
+.|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=351.84 Aligned_cols=298 Identities=20% Similarity=0.261 Sum_probs=257.8
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..++ +|.+.|++++|+|++..+|++|+.|++|++||+.+...... .....+.+|...|.+++|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG--------------VPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE--------------EEEEEEECCSSCEEEEEECT
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc--------------ccceEEeCCcccEEEEEECC
Confidence 3445 49999999999998755799999999999999875432211 01125789999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccC
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP 499 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~ 499 (1131)
||++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||..++++..+.+|...
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~ 150 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDW 150 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCc
Confidence 99999999999999999999987543 6889999999999999999 899999999999999888999999999999
Q ss_pred eEEEeecccC----CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 500 VYSVCPHQKE----NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 500 v~~~~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|.++++.+.. ++..+++++.|+.|++||++.......+..|...|.+++|+|+|++|++++. |+.|++||+.
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~ 226 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLA 226 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECC
Confidence 9999997743 4568999999999999999998888889999999999999999999999986 9999999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC------CCCCcceEEEcCCCCEEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG------GLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~i~~v~~sp~~~~l~~ 649 (1131)
+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|++|++
T Consensus 227 ~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 227 AKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp TTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred CCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence 99999888753 379999999999998888765 59999999887777664321 2336789999999999999
Q ss_pred EECCCcEEEEecCCC
Q 001178 650 TTADQGIKILANADG 664 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~~ 664 (1131)
|+.||.|++|++.++
T Consensus 304 g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 304 GYTDNVIRVWQVMTA 318 (319)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred eecCceEEEEEEeec
Confidence 999999999998654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=351.67 Aligned_cols=285 Identities=16% Similarity=0.217 Sum_probs=257.6
Q ss_pred cCCCcEEEEEEecC----CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 345 HQGSSVVSMDFHPF----HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspd----g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
.|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++.... ..+.+|...|.+++|+|+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~~ 91 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISHT 91 (321)
T ss_dssp SSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECSS
T ss_pred cCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECCC
Confidence 59999999999985 44 699999999999999987653221 146799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccC
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAP 499 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~ 499 (1131)
+.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|...
T Consensus 92 ~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~ 166 (321)
T 3ow8_A 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166 (321)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred CCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence 9999999999999999999987554 5778889999999999999 899999999999999 888888999999999
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
|.+++|+| ++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++. ++.|++||+++++.
T Consensus 167 v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 167 ILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANL 240 (321)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCE
T ss_pred EEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcce
Confidence 99999965 6689999999999999999999988899999999999999999999999986 89999999999999
Q ss_pred eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
...+.+|.. .|.+++|+|++.+|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++++.||.|++|
T Consensus 241 ~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 241 AGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHIY 317 (321)
T ss_dssp EEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 999988766 899999999999999999999999999999999988876544 89999999999999999999999999
Q ss_pred ec
Q 001178 660 AN 661 (1131)
Q Consensus 660 ~~ 661 (1131)
|+
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=344.37 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=250.7
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
.+++ +|.+.|++++|||+|+ +|++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 65 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred EEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeC
Confidence 4455 4999999999999998 59999999999999999887654 4668999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHE 497 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~ 497 (1131)
++++|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence 99999999999999999999987554 6889999999999999999 899999999999999 555 4557788999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEcc--CCCEEEEEeecCCCCceEEEEeC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSA--DGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..|.+++|+|. ++..|++|+.|++|++||++.......+. .+...+..+.|+| ++.+|++++. ++.|++||+
T Consensus 141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~ 215 (304)
T 2ynn_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (304)
T ss_dssp SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEET
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeC
Confidence 99999999763 45799999999999999998877666554 4556788999986 7789999986 999999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC--EEEEEEC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN--LLVVTTA 652 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~--~l~~~~~ 652 (1131)
++++++..+.+|.. .+.+++|+|++++|++++.||+|++||+.+++.+..+..+.. .+.+++|+|++. ++++|+.
T Consensus 216 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEET
T ss_pred CCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecC
Confidence 99999999999776 899999999999999999999999999999999988876543 789999999875 5777766
Q ss_pred CCcEEEEecCC
Q 001178 653 DQGIKILANAD 663 (1131)
Q Consensus 653 dg~i~iw~~~~ 663 (1131)
|| +.+|++.+
T Consensus 293 ~g-~~~~~~~~ 302 (304)
T 2ynn_A 293 NG-FTVLSLGN 302 (304)
T ss_dssp TE-EEEEECC-
T ss_pred Cc-eEEEEecc
Confidence 54 66777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=361.06 Aligned_cols=301 Identities=18% Similarity=0.268 Sum_probs=260.0
Q ss_pred cceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 338 RAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 338 ~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
..+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~ 115 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECA 115 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCE
T ss_pred eEEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEE
Confidence 3455555 59999999999999984 9999999999999999887654 4678999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeE
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF 491 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~ 491 (1131)
|+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+.
T Consensus 116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence 999999999999999999999975321 1223357899999999999998654 699999999999999 7888887
Q ss_pred Ee-----cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 492 QF-----EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 492 ~~-----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+ .+|...|.++++++ .++.++++|+.|+.|++||++. ......+.+|...|.+++|+|++++|++++.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---- 269 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD---- 269 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred EeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence 76 68999999999975 3558999999999999999984 4566778889999999999999999999987
Q ss_pred CceEEEEeCCCCeeeEEEecccC------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec--cCCCCCcce
Q 001178 566 DSHLVEWNESEGALKRTYIGFRK------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLPR 637 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~ 637 (1131)
|+.|++||+++++.+..+..+.. ..+.+++|+|+++++++|+.||.|++||...++.+..+.. .+|...|.+
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~ 349 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence 99999999999999888865432 1378999999999999999999999999999988877632 345558999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 638 LRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 638 v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++|+|+|.+|++|+.|+.|++|++...
T Consensus 350 l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 350 LGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999999998765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=342.20 Aligned_cols=294 Identities=16% Similarity=0.270 Sum_probs=258.7
Q ss_pred CceeEEecCCccCeEEEeeccc--CCccEEEEEecCCeEEEEeCCCCcee--EEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSR--VDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+.....+.+|.+.|.+++|++. .++.+|++|+.|++|++|+++..... ..+.+|...|.++.|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 3345667799999999999874 35679999999999999999876543 367889999999999999999999987
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
|+.|++||+.+++.+..+..+.. .+.+++|+|++++|++++.||.|++|++.+++....+..+.. .+.+++|+|
T Consensus 101 ---D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~sp 174 (321)
T 3ow8_A 101 ---DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSP 174 (321)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECT
T ss_pred ---CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECC
Confidence 99999999999999999887655 788899999999999999999999999999998888776554 799999999
Q ss_pred CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCC
Q 001178 643 EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGAD 722 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~ 722 (1131)
++++|++++.||.|++||+.++. ..
T Consensus 175 dg~~lasg~~dg~i~iwd~~~~~-~~------------------------------------------------------ 199 (321)
T 3ow8_A 175 DGKYLASGAIDGIINIFDIATGK-LL------------------------------------------------------ 199 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTE-EE------------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCc-EE------------------------------------------------------
Confidence 99999999999999999986541 00
Q ss_pred ccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCC
Q 001178 723 SAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN 802 (1131)
Q Consensus 723 ~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 802 (1131)
..
T Consensus 200 ---------------------------------------------------------------------~~--------- 201 (321)
T 3ow8_A 200 ---------------------------------------------------------------------HT--------- 201 (321)
T ss_dssp ---------------------------------------------------------------------EE---------
T ss_pred ---------------------------------------------------------------------EE---------
Confidence 00
Q ss_pred CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEE
Q 001178 803 PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLA 881 (1131)
Q Consensus 803 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 881 (1131)
+ .+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++
T Consensus 202 -------------------------~-~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 202 -------------------------L-EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp -------------------------E-CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -------------------------E-cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 0 03677888999999999999998 89999999999999999999999999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 882 ~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
|+| ++.+|++|+.|++|++||+.+++++..+.+|.+.|.+++|+|++++|++++.|++|++||..
T Consensus 256 ~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999 89999999999999999999999999999999999999999999999999999999999963
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=345.68 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=247.0
Q ss_pred eeeec-cCCC-cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 340 VACTM-HQGS-SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 340 ~~~~~-~h~~-~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++.++ +|.+ .|++++|+|+|+ +||+|+.|++|+|||+.+++.... .....+|...|.+++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEE
T ss_pred EeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEE
Confidence 44455 4877 999999999998 599999999999999987754321 1134689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---ceeEEe
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKLFQF 493 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~~~~ 493 (1131)
+|+|++||+|+.|++|++||+..+. ......+.+|...|.+++|+|+++ +|++|+.|++|++|| ..+ .++..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 146 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVL 146 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence 9999999999999999999998764 223456889999999999999999 899999999999999 444 345678
Q ss_pred cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+|...|.+++|+| ++.+|++++.|+.|++||.+.... ...+..|...|.+++|+|+|++|++++. |+.|++
T Consensus 147 ~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~i 220 (345)
T 3fm0_A 147 NSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRI 220 (345)
T ss_dssp CCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred cCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEE
Confidence 89999999999976 457999999999999999987653 3577889999999999999999999986 999999
Q ss_pred EeCCC---------------CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe----EE---EEEecc
Q 001178 572 WNESE---------------GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN----ML---TSTEAE 629 (1131)
Q Consensus 572 wd~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~---~~~~~~ 629 (1131)
|+... .+++..+.+.+...|.+++|+|++..+++++.|+.|++|+...+. .. ......
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 98632 133455666566689999999999999999999999999987542 11 111223
Q ss_pred CCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCCc
Q 001178 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
+|...|++++|+|++ .+|++++.||.|++|+..++.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 455689999999987 599999999999999998774
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=350.78 Aligned_cols=292 Identities=14% Similarity=0.141 Sum_probs=237.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcC------CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.|...|++++|||||+ +||+|+. |+.|++|+..++....... ....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~---------------~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLC---------------TAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGC---------------SEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEe---------------cccCCCCCCEEEEEEc
Confidence 4999999999999998 6899987 6789999988776543211 1245788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccce-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
|++++| +++.||+|+|||+.+++.... .....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 577899999999998765432 234568999999999999999 899999999999999 888999999999
Q ss_pred ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEe
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWN 573 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd 573 (1131)
...|.+++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .+|++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999976543 47899999999999999987766544 3455679999999985 56777765 89999999
Q ss_pred CCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEEE
Q 001178 574 ESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTT 651 (1131)
Q Consensus 574 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~ 651 (1131)
+++++.+..+.+|.. .|.+++|+|++ ++|++++.|++|+|||+.+++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999998766 89999999987 57899999999999999999887665 3445899999998 899999999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++|++...
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=355.31 Aligned_cols=285 Identities=18% Similarity=0.321 Sum_probs=257.3
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.+|.++|++++|+|++.+|++|+.||+|++||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56999999999999999999999999999999999987554 6889999999999999999 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++..+.+|...|.+++|+| ++.+|++++.|++|++||++++.....+..|...|.++.++|++.++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 77888999999999999999976 4579999999999999999999998899999999999999999999999986
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCC--------------------CCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTT--------------------RNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..+
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred --CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 89999999999999999988765 8999999996 678999999999999999999999
Q ss_pred EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
..+..|.. .|.+++|+|++++|++++.||.|++||+.++. ....+
T Consensus 332 ~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~-~~~~~-------------------------------- 376 (410)
T 1vyh_C 332 MTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTL-------------------------------- 376 (410)
T ss_dssp EEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSC-CCEEE--------------------------------
T ss_pred EEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEE--------------------------------
Confidence 88876654 79999999999999999999999999986541 11000
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
..|...|.+++|+|++..++
T Consensus 377 ------------------------------------------------------------~~h~~~v~~l~~~~~~~~l~ 396 (410)
T 1vyh_C 377 ------------------------------------------------------------NAHEHFVTSLDFHKTAPYVV 396 (410)
T ss_dssp ------------------------------------------------------------ECCSSCEEEEEECSSSSCEE
T ss_pred ------------------------------------------------------------cCCCCcEEEEEEcCCCCEEE
Confidence 12778899999999999999
Q ss_pred EeeecceeeEEee
Q 001178 784 ALWSNGVQKLWKW 796 (1131)
Q Consensus 784 ~~~~dg~i~iw~~ 796 (1131)
+++.||.|++|++
T Consensus 397 sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 397 TGSVDQTVKVWEC 409 (410)
T ss_dssp EEETTSEEEEEC-
T ss_pred EEeCCCcEEEEeC
Confidence 9999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=343.08 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=237.5
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccc-eeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM-LQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
|...|.+++|||||+ +|++++ |+++++||.... +|+....... ........|...|.+++|+||+ .|
T Consensus 29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l 96 (344)
T 4gqb_B 29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI 96 (344)
T ss_dssp CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence 677899999999998 577776 778888873211 1111000000 0011223466789999999985 67
Q ss_pred EEEeCCCeEEEEEecCCCcccee-eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQS-LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|...|.+
T Consensus 97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~ 174 (344)
T 4gqb_B 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC 174 (344)
T ss_dssp EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence 89999999999999998765432 34568999999999999999 899999999999999 889999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeCCCCee
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNESEGAL 579 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~~~~~~ 579 (1131)
++|++... .++++++.|++|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++.
T Consensus 175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSC 249 (344)
T ss_dssp EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--C
T ss_pred EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcE
Confidence 99976443 588999999999999999988777654 34557899999995 567777775 89999999999999
Q ss_pred eEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIK 657 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~ 657 (1131)
+..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++.+. +. +|...|++++|+|+++ +|++++.|++|+
T Consensus 250 ~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 250 VLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp CEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 999999776 89999999998 578999999999999999987654 33 4455899999999886 677999999999
Q ss_pred EEecCCC
Q 001178 658 ILANADG 664 (1131)
Q Consensus 658 iw~~~~~ 664 (1131)
+|++.+.
T Consensus 326 ~w~v~~~ 332 (344)
T 4gqb_B 326 HHVVPTE 332 (344)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 9998765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=349.16 Aligned_cols=318 Identities=16% Similarity=0.194 Sum_probs=231.8
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
.++.++.+.....|++.... ...|...|.+++|+|||++|++++.|. +++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~------------p~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~-------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTA------------PACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG-------------- 70 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE--------------
T ss_pred eEEecCCCccccccCCCCCC------------cccccCCEEEEEECCCCCEEEEEcCCC-CccccC--------------
Confidence 34455555677888765311 134889999999999999999998753 244442
Q ss_pred eeceeecCCCCcccccCC--CCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEE----EEeCCCCCeeEEEEeC
Q 001178 811 VAPQHWQPSNGLLMTNDV--PENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMT----TFMSPPPASTFLAFHP 884 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~--~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~ 884 (1131)
.+.+|+..++....... ..+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|.+++|+|
T Consensus 71 -~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 71 -SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp -EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred -eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 22444444443221111 1157888999999999988877779999999999876543 3447899999999999
Q ss_pred CCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001178 885 QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 885 ~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++..... ....
T Consensus 150 -dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~----~~~~ 224 (357)
T 4g56_B 150 -DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI----DFCA 224 (357)
T ss_dssp -SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC----CCTT
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee----eecc
Confidence 899999999999999999999999999999999999999999875 7899999999999999987643322 1223
Q ss_pred CCCCceEEEEcCCC-cEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCC
Q 001178 964 LPVGETRVQFHSDQ-VRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~-~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~ 1040 (1131)
+...+.+++|+|++ .+|+++ .|+.|++||+.+++.+..+..+ ...|++++|+|++ ++|++|+.|++|+|||+++
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 33678999999985 566665 5899999999999999888776 7899999999987 5899999999999999999
Q ss_pred CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1041 LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
++.+..+. |...|+ +++|+|.++.+|++||.||+|++|++....
T Consensus 302 ~~~~~~~~-----------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDLS-----------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEECC-----------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEECC-----------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 98765442 344444 789999888999999999999999997654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=340.22 Aligned_cols=248 Identities=14% Similarity=0.226 Sum_probs=224.3
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+||+++|++|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 577999999999999999999999999999999999876543 6788999999999999999 89999999999999
Q ss_pred e-CCC----ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEE
Q 001178 484 D-LSG----RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 484 d-~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
| .++ +....+.+|.+.|.++.|.+. ..+++++.|+.|++||++++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCC---CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 433 345678899999999999653 35899999999999999999998899999999999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ++.|++||++++..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 99999999999999999988766 8999999999999999999999999999999888777655555579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|+++++++|+.||.|++||..++
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC
Confidence 99999999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=341.08 Aligned_cols=296 Identities=14% Similarity=0.162 Sum_probs=230.3
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccc--cCCCCCCCCCeeEEEec
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMT--NDVPENAEDVVPCVALS 842 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~i~~l~~s 842 (1131)
.+...|.+++|+|||..|++++ |+++++|+... .+|+........ ......+...|.+++|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 3667899999999999877655 78889987432 112111000000 00000246789999999
Q ss_pred CCCCEEEEEeCCeEEEEECCCceeEEE----EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccccc
Q 001178 843 KNDSYVMSAGGGKVSLFNMMNFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 843 ~dg~~la~~~dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
||+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 997544444499999999998876544 448999999999999 899999999999999999999999999999999
Q ss_pred CeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC-cEEEEE-eCCeEEEEeCCC
Q 001178 919 HITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ-VRLLVN-HETQLAIYDGSK 995 (1131)
Q Consensus 919 ~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~-~d~~i~vwd~~~ 995 (1131)
.|++++|++++. +|++++.|++|++||+.+++...... ...+...+.+++|+|++ .+++++ .|+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeee----cceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 78999999999999999877543322 12233568899999964 567765 589999999999
Q ss_pred cccceeeecCCCCCCCeEEEEEccCC-CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
++++..+.+| ...|++++|+|++ ++|++|+.|++|+|||+.++++.. +.+ |...|. +++|+|.
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~----------H~~~V~--~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA----------HRDFVR--DATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC----------CSSCEE--EEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC----------CCCCEE--EEEEeCC
Confidence 9999998877 7899999999998 589999999999999999887543 322 344444 7899997
Q ss_pred CCCeEEEEecCCcEEEEecCCCc
Q 001178 1075 EPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1075 ~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+..+|++||.||+|++|++.+++
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 77789999999999999998765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=349.83 Aligned_cols=243 Identities=17% Similarity=0.239 Sum_probs=188.0
Q ss_pred cCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEe----cCCCccc---eeeeeec----------CcCCeeEEEEecCCC
Q 001178 406 KDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTY----QGSNDLC---QSLEIDA----------HVGGVNDLAFSYPNK 467 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~----~~~~~~~---~~~~~~~----------h~~~V~~l~~s~d~~ 467 (1131)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 35678999999999999 9999999999999999 8776200 1112222 688999999999999
Q ss_pred ceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCce----
Q 001178 468 QLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW---- 543 (1131)
Q Consensus 468 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~---- 543 (1131)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999965 5579999999999999999998888877777665
Q ss_pred -----------EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 544 -----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 544 -----------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
+.++.|++++. +++++. ++.|++||+.+++.+..+..|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 88999999865 666655 89999999999999988887665 89999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++||+.+++.+..+..+.. .|.+++|+|++ ++++++.|+.|++||+
T Consensus 272 ~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFYGHSQ--SIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EEECSSSBSCSEEECCCSS--CEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred EEEECCCCccceEecCCCc--cEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 9999987644443332221 34444444444 4444444444444443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=336.29 Aligned_cols=299 Identities=19% Similarity=0.266 Sum_probs=243.6
Q ss_pred eeeec-cCCCcEEEEEE-----ec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCE
Q 001178 340 VACTM-HQGSSVVSMDF-----HP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISV 412 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~f-----sp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 412 (1131)
+..++ +|.+.|++++| +| |++ +|++|+.|++|+|||+.+++..... ......+.+|...|
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSSCE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCCce
Confidence 33445 49999999999 77 887 6999999999999999865432100 01122578999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~ 492 (1131)
.+++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||..+.....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFS 154 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceee
Confidence 999999999999999999999999999987543 6789999999999999999 89999999999999965665555
Q ss_pred ec---CCccCeEEEeecccCC--------ccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 493 FE---GHEAPVYSVCPHQKEN--------IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 493 ~~---~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.. +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 44 7899999999976532 268999999999999994 45566677889999999999999999999986
Q ss_pred cCCCCceEEEEeCC-CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEE--EEec---------c
Q 001178 562 SKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--STEA---------E 629 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~ 629 (1131)
++.|++||+. .......+.. ...+.+++|+|++.++++ +.|+.|++|++.+++... .+.. .
T Consensus 234 ----dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 234 ----DKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp ----TCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred ----CCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999999994 4444555432 336999999999987764 567889999998876543 3321 1
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 34457899999999999999999999999998765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=344.37 Aligned_cols=320 Identities=13% Similarity=0.162 Sum_probs=264.1
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
.+..|+..+..+.+.+.+|.. .|.+++|+|++++|++|+.||+|++||+.+++....+..|.. .|.+++|+|+++++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 455677777888889999776 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
++++.|+.+++|++.+.... +
T Consensus 124 as~~~d~~v~iw~~~~~~~~-------------------------------~---------------------------- 144 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADR-------------------------------D---------------------------- 144 (380)
T ss_dssp EECCSSSCCEEEECCCCSSC-------------------------------C----------------------------
T ss_pred EEeeCCCcEEEEECCCCccc-------------------------------c----------------------------
Confidence 99999999999998654100 0
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
+...+
T Consensus 145 -----------~~~~~---------------------------------------------------------------- 149 (380)
T 3iz6_a 145 -----------GNMPV---------------------------------------------------------------- 149 (380)
T ss_dssp -----------CSSTT----------------------------------------------------------------
T ss_pred -----------CCccc----------------------------------------------------------------
Confidence 00000
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC-CEEEEEe-CCeEEEEECCCceeEEEE-----eCCCCCeeEE
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-SYVMSAG-GGKVSLFNMMNFKVMTTF-----MSPPPASTFL 880 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l 880 (1131)
.....+|...+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.++
T Consensus 150 ------------------~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 150 ------------------SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp ------------------CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred ------------------eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 00011577778888888864 5688887 899999999999998887 5788899999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEEEee-cceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001178 881 AFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 881 ~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+|++.++.+|++|+.||+|++||+. .++.+..+.+|.+.|++++|+|++++|++++.|++|++||+.+++.........
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 9987688999999999999999997 557788899999999999999999999999999999999999977644332211
Q ss_pred CC-CCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001178 960 PA-GKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 960 ~~-~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vw 1036 (1131)
.. ......+.+++|+|+|.+|+++. |+.|++||+.+++.+..+... ..|...|++++|+|||++|++|+.|++|++|
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 11 11123588999999999999975 899999999998887776322 3458899999999999999999999999999
Q ss_pred ECCCCc
Q 001178 1037 DADSLR 1042 (1131)
Q Consensus 1037 d~~~~~ 1042 (1131)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 987654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=328.14 Aligned_cols=285 Identities=20% Similarity=0.311 Sum_probs=251.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++... .+.+|...|.+++|+|++++|
T Consensus 21 gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSEE
T ss_pred ccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCEE
Confidence 5999999999999998 59999999999999998887654 467899999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++.+..+..|..+|.++
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence 999999999999999887554 6789999999999999999 899999999999999 7889999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+|++ ++.++++++.||.|++||+++.+....+. .+...+..++|+|++++|++++. ++.|++||+.+++.+..
T Consensus 156 ~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~ 229 (312)
T 4ery_A 156 HFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKT 229 (312)
T ss_dssp EECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEE
T ss_pred EEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEE
Confidence 9965 56799999999999999999887766554 45567999999999999999986 89999999999999999
Q ss_pred EecccCCc--eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE--CCCcEEE
Q 001178 583 YIGFRKKS--AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--ADQGIKI 658 (1131)
Q Consensus 583 ~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--~dg~i~i 658 (1131)
+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEE
Confidence 98876532 22233346788999999999999999999999988876644 799999999999999997 6999999
Q ss_pred EecC
Q 001178 659 LANA 662 (1131)
Q Consensus 659 w~~~ 662 (1131)
|+..
T Consensus 308 W~~d 311 (312)
T 4ery_A 308 WKSD 311 (312)
T ss_dssp EECC
T ss_pred ecCC
Confidence 9853
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=349.43 Aligned_cols=303 Identities=15% Similarity=0.235 Sum_probs=246.7
Q ss_pred eeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEEC----CCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDV----GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 342 ~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++.+..... ...+.. .........+|.+.|.+++|
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI-IAELRH--PFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE-EEEEEC--CCCCC------CBCEEEEEE
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc-cccccc--cccccccccCCCCceEEEEE
Confidence 334578999999999999845999999999999999 88773110000 000000 00000112347889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
+|++++|++|+.||.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++.+..+..+
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 99999999999999999999 444433 36788999999999999999 899999999999999 788888888888
Q ss_pred ccC---------------eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEee
Q 001178 497 EAP---------------VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 497 ~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
... +.+++|.+. ..+++++.||.|++||+++......+..+...|.+++|+|++++|++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 267 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267 (425)
T ss_dssp ---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred ccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence 777 888988753 46899999999999999999888888889999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.|++||+.+++.+..+..|.. .+.+++|+|++ ++++++.|+.|++||+.+++.+..+..+.. .|.+++|+
T Consensus 268 ----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s 339 (425)
T 1r5m_A 268 ----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIFAGRIS 339 (425)
T ss_dssp ----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEEEEEEC
T ss_pred ----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEEEEEEc
Confidence 89999999999999999887655 89999999999 999999999999999999999888876554 79999999
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|++++|++++.||.|++|++.++
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHH
T ss_pred CCCCEEEEEECCCeEEEEECCCC
Confidence 99999999999999999998765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=328.46 Aligned_cols=248 Identities=18% Similarity=0.302 Sum_probs=224.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
++.+|.+.|.+++|+||+++||+|+.||+|++||+.++..+. .+.+|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999876543 6788999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce-eEEecCCCceEEEEEEcc-CCCEEEEEe
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-RVDYDAPGLWCTTMLYSA-DGSRLFSCG 560 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-~g~~l~~~~ 560 (1131)
| .+++.+..+.+|...|.+++|+| ++.+|++|+.|++|++||+++... ...+..|...|.+++|+| ++..|++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9 88999999999999999999975 457999999999999999987744 456788999999999999 678999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
. |+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|+.|++||+.+++++..+..|.. .|.++
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~ 234 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFA 234 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEEE
T ss_pred C----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEEE
Confidence 7 999999999988877777766666888899986 678999999999999999999999998886654 79999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++++|++++.||.|++||..++
T Consensus 235 ~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 235 VFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=341.39 Aligned_cols=307 Identities=18% Similarity=0.289 Sum_probs=246.8
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
+.+.++|.+.|+|++|||||+ +||+|+ +++++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 445668999999999999998 588886 789999999998875421100000 00000000011123445699999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
||++||+|+.|++|++||+.+++.+ ..+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEE---EEEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 9999999999999999999987644 36789999999999999999 799999999999999 7777776665 567
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------cCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.+.+++|++ .++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++
T Consensus 208 ~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 799999876 35689999999999999999988766655 467789999999999999999986 999999
Q ss_pred EeCCCC------------eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 572 WNESEG------------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 572 wd~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
||+++. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34556777665 899999999999999999999999999999999988876654 799999
Q ss_pred EcC------CCCEEEEEECCCcEEEEecCC
Q 001178 640 FNK------EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 640 ~sp------~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
|++ ++++|++|+.||.|++|++..
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 876 688999999999999999754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-36 Score=332.04 Aligned_cols=294 Identities=15% Similarity=0.214 Sum_probs=230.6
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec-c-CCCCCEEEEE
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV-K-DSSISVSRVA 416 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~~~ 416 (1131)
+.+++ +|.+.|++++|+|+ +||+|+.|++|+|||+.++..... ..+ . +|...|.+++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v~ 65 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSVA 65 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEEE
T ss_pred cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEEE
Confidence 34445 49999999999997 699999999999999987532110 022 3 4999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCC----ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CC----
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSN----DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SG---- 487 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~----~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~---- 487 (1131)
|+|++++||+|+.|++|++||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||. .+
T Consensus 66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~ 143 (330)
T 2hes_X 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY 143 (330)
T ss_dssp ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence 99999999999999999999996432 1223446789999999999999999 8999999999999994 32
Q ss_pred ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC--ceeEEecCCCceEEEEEEccC--CCEEEEEeecC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD--GSRLFSCGTSK 563 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~ 563 (1131)
+++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.++.|+|+ +.+|++++.
T Consensus 144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-- 219 (330)
T 2hes_X 144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-- 219 (330)
T ss_dssp EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence 45678899999999999976 4579999999999999998766 456678889999999999998 778999986
Q ss_pred CCCceEEEEeCCCC--------eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE--EEEEeccCCCC
Q 001178 564 EGDSHLVEWNESEG--------ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM--LTSTEAEGGLP 633 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~ 633 (1131)
|+.|++||+..+ .....+...+...|.+++|++++ +|++++.||.|++|+..+++. .... ...+..
T Consensus 220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~ 295 (330)
T 2hes_X 220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGV 295 (330)
T ss_dssp --TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTT
T ss_pred --CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccccc
Confidence 899999998654 34444555345589999999654 899999999999999988753 2222 223433
Q ss_pred -CcceEEEcC--CCCEEEEEECCCcEEEEecCC
Q 001178 634 -SLPRLRFNK--EGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 634 -~i~~v~~sp--~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.|.+++|+| ++++|++++.||.|++|++..
T Consensus 296 ~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 689999999 789999999999999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=331.57 Aligned_cols=301 Identities=22% Similarity=0.282 Sum_probs=256.6
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.+..+| +|.+.|++|+|+|++..+||||+.||+|+|||+.+++..... ....+.+|...|.+++|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence 344556 499999999999985457999999999999999876643311 12257899999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc--eeEEecC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR--KLFQFEG 495 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~ 495 (1131)
+|||++|++++.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||..+. ....+.+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~ 169 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES 169 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence 9999999999999999999998865433 4567888899999999999 7999999999999994333 3445678
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|...+..++|.+.....++++++.|+.|++||+++......+..|...|.+++|+|++++|++++. |+.|++||+.
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~ 245 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN 245 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence 999999999988887789999999999999999999999999999999999999999999999986 8999999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec-------cCCCCCcceEEEcCCCCEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-------EGGLPSLPRLRFNKEGNLLV 648 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~i~~v~~sp~~~~l~ 648 (1131)
+++.+..+..+ ..+.+++|+|++. +++++.|+.|++||+.++..+..+.. ..+...|++++|+|++++|+
T Consensus 246 ~~~~~~~~~~~--~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 246 EGKHLYTLDGG--DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp TTEEEEEEECS--SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cCceeeeecCC--ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 99999888754 3799999999875 55667799999999999887776543 24555899999999999999
Q ss_pred EEECCCcEEEEecCCCc
Q 001178 649 VTTADQGIKILANADGL 665 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~ 665 (1131)
+|+.||.|+||++.+|.
T Consensus 323 sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 323 AGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTSCEEEEEEEC--
T ss_pred EEeCCCEEEEEeCCCcC
Confidence 99999999999998873
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=356.32 Aligned_cols=293 Identities=16% Similarity=0.270 Sum_probs=246.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEE----------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVG----------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSR 414 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 414 (1131)
.+...|.+++|+|+|+.+||+| +.||.|+|||+.+++.... + ....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--~---------------~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--I---------------ASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--S---------------CCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--E---------------EEEecCCceEE
Confidence 3456899999999998679999 8899999999998764310 0 12368899999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCc---
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGR--- 488 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~--- 488 (1131)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|++++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1234467899999999999998 66 799999999999999 5554
Q ss_pred ---eeE---EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------CceEEEEEEccCC-CE
Q 001178 489 ---KLF---QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADG-SR 555 (1131)
Q Consensus 489 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g-~~ 555 (1131)
... .+.+|...|.+++|++.. +.++++++.||.|++||+++.+....+..+ ...|.+++|+|++ .+
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 222 346799999999997642 479999999999999999998888887776 6789999999997 57
Q ss_pred EEEEeecCCCCc---eEEEEeCCCC-eeeEEEe-cccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEecc
Q 001178 556 LFSCGTSKEGDS---HLVEWNESEG-ALKRTYI-GFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEAE 629 (1131)
Q Consensus 556 l~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 629 (1131)
+++++. ++ .|++||++++ ..+..+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+
T Consensus 230 l~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 230 VATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp EEEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred EEEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 777775 55 9999999986 5666676 6554 899999999 8999999999999999999999999888866
Q ss_pred CCCCCcceEEEcCCC-CEEEEEECCCcEEEEecCCC
Q 001178 630 GGLPSLPRLRFNKEG-NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~-~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. .|.+++|+|++ .++++++.|+.|++|++.+.
T Consensus 305 ~~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 305 GN--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SS--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CC--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 54 79999999998 89999999999999999776
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.53 Aligned_cols=287 Identities=15% Similarity=0.190 Sum_probs=252.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++|+||+++||+|+.|++|++||..+++... .+..|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 477999999999999999999999999999999998876443 5678999999999999999 89999999999999
Q ss_pred eC-CC------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc--CCC
Q 001178 484 DL-SG------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA--DGS 554 (1131)
Q Consensus 484 d~-~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~ 554 (1131)
+. .. .....+.+|...|.+++|++ ++..|++++.|++|++||+++++....+..|...|.++.++| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 83 22 24566778999999999965 457899999999999999999999889999999999999987 578
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
+|++++. |+.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+..++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999986 99999999999999999988766 899999999999999999999999999999988877765555456
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCc
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARP 714 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~ 714 (1131)
+.+++|+|++.++++++.|+.|++||+.++.. ..
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~--------------------------------------------- 320 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VS--------------------------------------------- 320 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EE---------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EE---------------------------------------------
Confidence 88999999999999999999999999866511 00
Q ss_pred cccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEE
Q 001178 715 STILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLW 794 (1131)
Q Consensus 715 ~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw 794 (1131)
.+ .+|...|.+++|+|+|.+|++++.|+.+++|
T Consensus 321 --------------------------------------------~l---~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 321 --------------------------------------------IL---FGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp --------------------------------------------EE---CCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred --------------------------------------------EE---ECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 00 2378899999999999999999999999999
Q ss_pred e
Q 001178 795 K 795 (1131)
Q Consensus 795 ~ 795 (1131)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=325.85 Aligned_cols=247 Identities=20% Similarity=0.324 Sum_probs=218.5
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCc--cceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSND--LCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~--~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... ......+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 578999999999999965 8999999999999999975432 123456889999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccC------C
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD------G 553 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~------g 553 (1131)
++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.+.|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 88999999999999999999965 55799999999999999996 4566677888899999999985 4
Q ss_pred CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCC
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD--- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---
Confidence 57888886 99999999999999999988766 89999999999999999999999999999999988887543
Q ss_pred CcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.|.+++|+|++.++++++.+ .+++|++...
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 69999999999999988765 5999998654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=327.71 Aligned_cols=312 Identities=14% Similarity=0.198 Sum_probs=244.4
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
.+++..+.+|....+.+++|+|++++|++|+.|+.|++||+.++...... ...++...|.+++|+|++++|++++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 34667788887768999999999999999999999999999888654332 23455668999999999999999999999
Q ss_pred EEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecc
Q 001178 656 IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLE 735 (1131)
Q Consensus 656 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 735 (1131)
+++|+...+...
T Consensus 85 v~iw~~~~~~~~-------------------------------------------------------------------- 96 (345)
T 3fm0_A 85 TCIWKKNQDDFE-------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEEECCC-EE--------------------------------------------------------------------
T ss_pred EEEEEccCCCeE--------------------------------------------------------------------
Confidence 999987543000
Q ss_pred ccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeecee
Q 001178 736 DISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQH 815 (1131)
Q Consensus 736 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 815 (1131)
. +..
T Consensus 97 ----------------------------------------------~--------~~~---------------------- 100 (345)
T 3fm0_A 97 ----------------------------------------------C--------VTT---------------------- 100 (345)
T ss_dssp ----------------------------------------------E--------EEE----------------------
T ss_pred ----------------------------------------------E--------EEE----------------------
Confidence 0 000
Q ss_pred ecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc---eeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 816 WQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF---KVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 816 w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
+ .+|...|.+++|+|++++|++++ |++|++||+.++ .++..+..|...|.+++|+| ++.+|+
T Consensus 101 ------------~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 166 (345)
T 3fm0_A 101 ------------L-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLA 166 (345)
T ss_dssp ------------E-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEE
T ss_pred ------------c-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEE
Confidence 0 14778888999999999999988 889999998765 45667888999999999999 899999
Q ss_pred EEeCCCcEEEEEeecce--eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----------eeeeeec
Q 001178 892 IGMEDSTIQIYNVRVDE--VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR----------KSIAIQL 959 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~----------~~~~~~~ 959 (1131)
+|+.|++|++|+..+++ +...+.+|.+.|++++|+|+|++|++++.|++|++|+....... .......
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 99999999999998875 45788999999999999999999999999999999997432211 0111222
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCcccce----e--eecCCCCCCCeEEEEEccCC-CEEEEEecCC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIR----Q--WVPQDVLSSPISSAAYSCNS-QLIYATFTDG 1031 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~----~--~~~~~~~~~~v~~i~~s~dg-~~l~s~~~dg 1031 (1131)
..+.+...+..++|+|++..|+++ .|+.|++|+...+.... . ...+..|...|++++|+|++ .+||+|+.||
T Consensus 247 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp ECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred ecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 333355789999999999999885 59999999987643211 1 11234568999999999998 4999999999
Q ss_pred cEEEEECCCCceeeE
Q 001178 1032 SIGVFDADSLRLRCR 1046 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~ 1046 (1131)
+|++|++.+++....
T Consensus 327 ~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 327 EVAFWKYQRPEGLHH 341 (345)
T ss_dssp CEEEEEECC------
T ss_pred cEEEEEecCCCCccc
Confidence 999999988776543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=370.05 Aligned_cols=521 Identities=12% Similarity=0.085 Sum_probs=376.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+...+.+.+|||+ + ||..+. +.|++|++.+++.. .+.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~--------------------~lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTR--------------------KIVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEE--------------------EEECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEE--------------------EeeeCCCcccCeEECCCCCEEE
Confidence 5568999999964 4 555543 69999999887653 2568999999999999999999
Q ss_pred EEeCC------CeEEEEEecCCCccceeeeeecCcCCe-------eEEEEecCCCceEEEEEcCC------CcEEEEeCC
Q 001178 426 VAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGV-------NDLAFSYPNKQLCIVTCGDD------KLIRVWDLS 486 (1131)
Q Consensus 426 s~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V-------~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~ 486 (1131)
+++.+ ..|.+||+.+++. ..+..|...+ .+++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999988752 2577888888 9999999998 67777754 457788855
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEec------------CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCC
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV------------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 554 (1131)
+.....+..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 55555555443 34566764 5 7777653 345667754443455566788889999999988 4
Q ss_pred EEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC---
Q 001178 555 RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--- 630 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 630 (1131)
.++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++.... +..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccc
Confidence 4444432 45566665432 33444454443 35667999999988887 48999999995443 33443321
Q ss_pred ------CCCCcceEEEc-CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 631 ------GLPSLPRLRFN-KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 631 ------~~~~i~~v~~s-p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
+...+..++|+ |||+.+++++ ++.+.+|+...+.. ..
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~~---------------------------------- 331 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-LK---------------------------------- 331 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-EE----------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-EE----------------------------------
Confidence 11258899999 9999998887 78899998765410 00
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCcc-ceEEEEeecCCceE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSAS-KVARLLYTNSGIGI 782 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l 782 (1131)
+ ..+.. .+..++|+ +|+.+
T Consensus 332 --------------------------------------------------------~---~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 332 --------------------------------------------------------V---PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp --------------------------------------------------------C---SCCSCEEEEEECSS-SEEEE
T ss_pred --------------------------------------------------------c---cCCCcceEEeeeEc-CCCeE
Confidence 0 01333 67788999 99999
Q ss_pred EEeeecceee-EEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEE
Q 001178 783 LALWSNGVQK-LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFN 860 (1131)
Q Consensus 783 ~~~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd 860 (1131)
+.++.++.+. +|++.. +.... +. .+...+..++|||||++|++++ ++.|++||
T Consensus 352 ~~~s~~~~l~~~~d~~~----------------------~~~~~--l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRT----------------------GKAEK--FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEETTEEEEEEEETTT----------------------CCEEE--CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEECCCceEEEEECCC----------------------CCceE--ec-CCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888766665 665432 22211 22 4667899999999999999988 78999999
Q ss_pred CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC----------cEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 861 MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS----------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 861 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----------~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+.+++....+..|...+.+++||| |+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||+
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~ 484 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK 484 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred CCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence 999998888878889999999999 888888877654 89999999887 677888988999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCceeee-------ee----------------------eec--------CCCCCCCCceEEEE
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKS-------IA----------------------IQL--------PAGKLPVGETRVQF 973 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~-------~~----------------------~~~--------~~~~~~~~v~~v~~ 973 (1131)
+|++++.++...+|+......... .. +.. ....+...+..+++
T Consensus 485 ~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~ 564 (1045)
T 1k32_A 485 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 564 (1045)
T ss_dssp EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred EEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEE
Confidence 999999988888887543221000 00 000 00012245778999
Q ss_pred cCCCcEEEE------------E--eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 974 HSDQVRLLV------------N--HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 974 s~d~~~l~~------------~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+|||.++++ + ....+++||+.+++..... ..+.+++|||||++|++++.+ .|++||+.
T Consensus 565 s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 565 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred cCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 999987775 1 2457889999888753322 368899999999999999855 89999998
Q ss_pred CCc
Q 001178 1040 SLR 1042 (1131)
Q Consensus 1040 ~~~ 1042 (1131)
+++
T Consensus 637 ~~~ 639 (1045)
T 1k32_A 637 EKP 639 (1045)
T ss_dssp SCT
T ss_pred cCc
Confidence 877
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=327.35 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=242.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.|.+++|+|||+ +++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 667899999999998 57777766666665443322211 2347999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeee--cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc--eeEEecCCccCe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHEAPV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~h~~~v 500 (1131)
+++ ||.|++||+.++........+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554444444 7999999999999999 899999999999999 5555 567788899999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ +++++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 5689999999999999999999888888889999999999999999999986 899999999999988
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
..+. ....+.+++|+|+++++++++.++.|++||+.+++... +. .+...|.+++|+|+++++++++.||.|++|+
T Consensus 219 ~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 8775 33479999999999999999999999999999887643 33 3444899999999999999999999999999
Q ss_pred cCCC
Q 001178 661 NADG 664 (1131)
Q Consensus 661 ~~~~ 664 (1131)
+.++
T Consensus 294 ~~~~ 297 (337)
T 1gxr_A 294 TPYG 297 (337)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 8765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=318.58 Aligned_cols=250 Identities=23% Similarity=0.347 Sum_probs=224.2
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999998876443 5789999999999999999 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
| .+++.+..+.+|...|.+++|++ ++.++++++.|+.|++||+++......+..|...|.++.|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88899999999999999999965 5579999999999999999999888888899999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc-
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN- 641 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s- 641 (1131)
++.|++||+++++.+..+...+...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8999999999999888887666668999999999999999999999999999999998888766543223333444
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++.++++|+.||.|++||+.++
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC
T ss_pred CCCcEEEEECCCCEEEEEECCCc
Confidence 67899999999999999998765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=318.72 Aligned_cols=315 Identities=13% Similarity=0.162 Sum_probs=263.5
Q ss_pred CccccccCCCCCcccccCCC---------cccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccc
Q 001178 316 SVDEATYPVPSQQATWSLDD---------LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSK 386 (1131)
Q Consensus 316 ~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~ 386 (1131)
.+..++++|+|+........ ........++|...|++++|+|+++ +|++|+ ||.|++||+.+++....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~~~- 87 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP- 87 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC-
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCceee-
Confidence 46678899999865443321 1234555668999999999999998 588888 99999999988764431
Q ss_pred cceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCC
Q 001178 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPN 466 (1131)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~ 466 (1131)
+. .....+|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|++
T Consensus 88 -~~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 88 -VS------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -SE------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTS
T ss_pred -ee------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCC
Confidence 10 0012378999999999999999999999999999999987632 334678899999999999999
Q ss_pred CceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEE
Q 001178 467 KQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCT 545 (1131)
Q Consensus 467 ~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~ 545 (1131)
+ ++++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.
T Consensus 154 ~--~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 154 K--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp S--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred C--EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 9 899999999999999 78888899999999999999965 55899999999999999999887776654 566799
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 625 (1131)
+++|+|+++++++++. ++.|++||+.+++.. .+..|.. .+.+++|+|+++++++++.||.|++||+.+++.+..
T Consensus 229 ~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 229 SLGYCPTGEWLAVGME----SSNVEVLHVNKPDKY-QLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTSSCEE-EECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCCEEEEEcC----CCcEEEEECCCCCeE-EEcCCcc-ceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 9999999999999986 889999999988754 4555444 899999999999999999999999999999988755
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
... ...+.+++|+|+++++++++.||.|++|++
T Consensus 303 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 303 SKE---SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEC---SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecC---CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 443 337999999999999999999999999986
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=357.61 Aligned_cols=292 Identities=21% Similarity=0.292 Sum_probs=249.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|+|++..+|++|+.||+|+|||+.++...... ....+.+|...|.+++|+|+|++|
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--------------AQRRLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--------------ccceecCCCCcEEEEEECCCCCEE
Confidence 599999999999987668999999999999999875432210 112477999999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe----cCCccCe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF----EGHEAPV 500 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~h~~~v 500 (1131)
++|+.|++|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 999999999999999876543 6789999999999999999 799999999999999655554443 4789999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++......+++++.|++|++||+++......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.+
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKL 596 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEE
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceE
Confidence 9999988765578999999999999999999888899999999999999999999999986 999999999999988
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-----------------CCCcceEEEcCC
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-----------------LPSLPRLRFNKE 643 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~i~~v~~sp~ 643 (1131)
..+.. ...+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+++++|+|+
T Consensus 597 ~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 597 YSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp ECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred EEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 77654 34799999999988777665 56699999999988877653211 113578999999
Q ss_pred CCEEEEEECCCcEEEEecC
Q 001178 644 GNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~~ 662 (1131)
|++|++|+.||.|++|++.
T Consensus 674 g~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEEcCCCeEEEEecc
Confidence 9999999999999999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=316.91 Aligned_cols=307 Identities=14% Similarity=0.206 Sum_probs=232.0
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC--eEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ .....+....|...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566778888766 8999999987 9999999999999999875 344444333355689999999999999999999
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.|++|+........
T Consensus 80 ~~v~iw~~~~~~~~~----------------------------------------------------------------- 94 (330)
T 2hes_X 80 STVSIWAKEESADRT----------------------------------------------------------------- 94 (330)
T ss_dssp SCEEEEEC------------------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc-----------------------------------------------------------------
Confidence 999999975320000
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeec
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAP 813 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 813 (1131)
.. .. + +..
T Consensus 95 --------------------------------~~-----------~~-~--------~~~-------------------- 102 (330)
T 2hes_X 95 --------------------------------FE-----------MD-L--------LAI-------------------- 102 (330)
T ss_dssp --------------------------------CC-----------CE-E--------EEE--------------------
T ss_pred --------------------------------cc-----------ce-e--------EEE--------------------
Confidence 00 00 0 000
Q ss_pred eeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 814 QHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 814 ~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
+ .+|...|.+++|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.
T Consensus 103 --------------~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~ 166 (330)
T 2hes_X 103 --------------I-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEA 166 (330)
T ss_dssp --------------E-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSS
T ss_pred --------------E-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCC
Confidence 0 14788899999999999999998 89999999842 356778899999999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecc--eeEEeecccccCeeEEEEccC--CCEEEEEeCCCcEEEEEcCCCcee---eeeeeecCC
Q 001178 889 IIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTN--LNILVSSGSDAQLIFWNTDTWEKR---KSIAIQLPA 961 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~d--g~~l~s~~~Dg~v~lwd~~~~~~~---~~~~~~~~~ 961 (1131)
+|++|+.|++|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+... .........
T Consensus 167 ~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 9999999999999999876 678899999999999999999 778999999999999998764211 011222233
Q ss_pred CCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc--ceeeecCCCCCC-CeEEEEEcc--CCCEEEEEecCCcEEEE
Q 001178 962 GKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC--IRQWVPQDVLSS-PISSAAYSC--NSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 962 ~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~-~v~~i~~s~--dg~~l~s~~~dg~i~vw 1036 (1131)
..+...+.+++|++++.+++++.|+.|++|+..+++. .... ...|.. .|++++|+| ++++|++|+.||.|++|
T Consensus 247 ~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR--ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324 (330)
T ss_dssp SCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE--SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEE
T ss_pred cccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc--ccccccceEEEEEEecCCCceEEEEecCCCcEEEE
Confidence 3345789999999887555556799999999987642 2222 122355 899999999 78999999999999999
Q ss_pred ECCC
Q 001178 1037 DADS 1040 (1131)
Q Consensus 1037 d~~~ 1040 (1131)
++++
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=340.56 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=238.4
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 8899999999999999877654 23344 445566889999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
+.|+.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|+.|++|| .+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999876433 4578999999999999999 899999999999999 7888999999999999999997
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCceeEEecC---CCceEEEE---------------------EEccCCCEEEEEeec
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA---PGLWCTTM---------------------LYSADGSRLFSCGTS 562 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~---------------------~~s~~g~~l~~~~~~ 562 (1131)
+ ++.+|++++.||.|++||+++++....+.. +...+.++ +|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 5 568999999999999999999888777764 33344444 45788999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCCeE-EEEEeccCCCCCcceEEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~v~~ 640 (1131)
++.|++||+++++.+..+...+...+.+++|+|++. +|++++.||.|++||+.+++. +..+..+. ...+.++.+
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~ 343 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYF 343 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEE
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEe
Confidence 899999999999988888766666899999999998 999999999999999998754 56665532 236777755
Q ss_pred cCCCCEEEEEECCCcEEEEecCCC
Q 001178 641 NKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++++|++++.|+.|++|++...
T Consensus 344 -~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 344 -AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -ETTEEEEEETTTEEEEEEEECCT
T ss_pred -CCCCEEEEecCCccEEEEeccCC
Confidence 57889999999999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=340.77 Aligned_cols=347 Identities=9% Similarity=0.082 Sum_probs=263.3
Q ss_pred ccCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEecC---CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 405 VKDSSISVSRVAWSP-DGNFIGVAFTKHLIHLYTYQG---SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 405 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
..+|.+.|++++|+| ++++||+|+.||+|++||+.+ +........+ +|...|++++|+|+++ +|++|+.|+.|
T Consensus 59 ~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i 135 (437)
T 3gre_A 59 MENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQI 135 (437)
T ss_dssp CTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEE
Confidence 379999999999999 999999999999999999987 5433323233 5999999999999999 89999999999
Q ss_pred EEEeC----CCceeEEecC------------CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--CCc
Q 001178 481 RVWDL----SGRKLFQFEG------------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--PGL 542 (1131)
Q Consensus 481 ~iwd~----~~~~~~~~~~------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~ 542 (1131)
++||. +++.+..+.+ +...+.++.+...+++.++++++.||.|++||+++.+....+.. |..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 99994 5555444332 45566666665667889999999999999999999998888887 678
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEe----CCCCEEEEEEcCCcEEEEEcC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD----TTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
.|.+++|+|++++|++++. ++.|++||+++++.+..+...+...|.+++|+ +++.+|++++.||.|++||+.
T Consensus 216 ~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CEEEEEECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 9999999999999999986 89999999999999998863333489999655 457799999999999999999
Q ss_pred CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
+++.+..+..+.. .+..+.|+|+++.+ ...
T Consensus 292 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l--------------~~~---------------------------------- 321 (437)
T 3gre_A 292 KGHCQYAFINSDE--QPSMEHFLPIEKGL--------------EEL---------------------------------- 321 (437)
T ss_dssp TTEEEEEEESSSS--CCCGGGGSCBCSSG--------------GGC----------------------------------
T ss_pred CCcEEEEEEcCCC--CCccceeccccccc--------------ccc----------------------------------
Confidence 9988887765543 45555555543221 000
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
T Consensus 322 -------------------------------------------------------------------------------- 321 (437)
T 3gre_A 322 -------------------------------------------------------------------------------- 321 (437)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
.+ ....|...|.+++|+ ++++|++++ |+.|+
T Consensus 322 -----------~~------------------------------------~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~ 353 (437)
T 3gre_A 322 -----------NF------------------------------------CGIRSLNALSTISVS-NDKILLTDEATSSIV 353 (437)
T ss_dssp -----------CC------------------------------------CCCCSGGGGCCEEEE-TTEEEEEEGGGTEEE
T ss_pred -----------ee------------------------------------cccccCCceEEEEEC-CceEEEecCCCCeEE
Confidence 00 000266778889999 778888888 89999
Q ss_pred EEECCCceeEEEEeCCCC---CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC--CCEE
Q 001178 858 LFNMMNFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN--LNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l 932 (1131)
+||+.+++....+.+|.. ......+++ ...+++.. |+............|.+.|++++|+++ +.+|
T Consensus 354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 354 MFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp EEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEE
T ss_pred EEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEE
Confidence 999999999888887543 355556666 44444433 333344445666789999999999998 7799
Q ss_pred EEEeCCCcEEEEE
Q 001178 933 VSSGSDAQLIFWN 945 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd 945 (1131)
++++.||.|++|+
T Consensus 425 ~s~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VACDNSGLIGIFQ 437 (437)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCceEEEeC
Confidence 9999999999995
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=335.16 Aligned_cols=344 Identities=11% Similarity=0.101 Sum_probs=280.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345579999999999999999999999998876543 34445 4455557899999 899999999999999 7777
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCce
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~ 568 (1131)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 7777889999999999976 5579999999999999999999988899999999999999999999999986 899
Q ss_pred EEEEeCCCCeeeEEEecc--cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 569 LVEWNESEGALKRTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
|++||+++++.+..+..+ +...+.++++.+.+... ....+...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------------~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-----------------------LHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-----------------------CGGGCCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-----------------------eeecccCcccceEEcCCCCE
Confidence 999999999999988764 23367777776654321 01112236899999999999
Q ss_pred EEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 647 LVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
+++++.||.|++||+.++...
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~----------------------------------------------------------- 282 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQT----------------------------------------------------------- 282 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEE-----------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCcee-----------------------------------------------------------
Confidence 999999999999998654100
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCc
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK 806 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 806 (1131)
..
T Consensus 283 --------------------------------------------------------~~---------------------- 284 (420)
T 3vl1_A 283 --------------------------------------------------------IQ---------------------- 284 (420)
T ss_dssp --------------------------------------------------------EE----------------------
T ss_pred --------------------------------------------------------EE----------------------
Confidence 00
Q ss_pred cceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC-EEEEEe-CCeEEEEECCCcee-EEEEeC-CCCCeeEEEE
Q 001178 807 ATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS-YVMSAG-GGKVSLFNMMNFKV-MTTFMS-PPPASTFLAF 882 (1131)
Q Consensus 807 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~ 882 (1131)
+...|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+
T Consensus 285 ---------------------~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 285 ---------------------LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp ---------------------ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred ---------------------cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 0013677889999999998 888888 89999999998754 666665 6677888855
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecc---------eeEEeecccccCeeEEEEccCCC---EEEEEeCCCcEEEEEcCC
Q 001178 883 HPQDNNIIAIGMEDSTIQIYNVRVD---------EVKTKLKGHQKHITGLAFSTNLN---ILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 883 s~~~~~~la~g~~dg~I~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~ 948 (1131)
+ ++.+|++++.||.|++|++... .....+.+|.+.|.+++|+|++. .|++++.+|.+.+|+++.
T Consensus 344 -~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 344 -A-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -E-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred -C-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4 5789999999999999998763 22334668899999999999999 788888999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=344.46 Aligned_cols=275 Identities=9% Similarity=0.086 Sum_probs=211.6
Q ss_pred CcccceeeeccCCCcEEEEEEecCC---------CcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec
Q 001178 335 DLPRAVACTMHQGSSVVSMDFHPFH---------HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1131)
Q Consensus 335 ~~~~~~~~~~~h~~~V~~~~fspdg---------~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1131)
+.+.+...++.+.+.|++|+|+|++ + +||+|+.++. +
T Consensus 121 ~~~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~--------~------------------------- 166 (524)
T 2j04_B 121 ANGKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYM--------D------------------------- 166 (524)
T ss_dssp SSCCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------------------------
T ss_pred CCCCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEeccc--------C-------------------------
Confidence 3355666677789999999999987 4 6888875531 0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccce-eeeeecCcCCeeEEEEecC------CCceEEEEEcCCC
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYP------NKQLCIVTCGDDK 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~l~~s~d------~~~~~l~s~s~d~ 478 (1131)
-..+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|+
T Consensus 167 ---------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dg 235 (524)
T 2j04_B 167 ---------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEG 235 (524)
T ss_dssp ------------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTS
T ss_pred ---------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCC
Confidence 01368999999999999999999988764321 2346678899999999997 45 899999999
Q ss_pred cEEEEe-CCCce-----------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCceEE
Q 001178 479 LIRVWD-LSGRK-----------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGLWCT 545 (1131)
Q Consensus 479 ~i~iwd-~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~ 545 (1131)
+|+||| ..+.. ...+.+|...|.+++|++. ..|++|+.||+|++||+++.. ....+..|...|.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL 312 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence 999999 44421 2467889999999999752 489999999999999998764 3446788999999
Q ss_pred EE--EEccCC-CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 546 TM--LYSADG-SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 546 ~~--~~s~~g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
++ .|+|+| .+|++++. |++|++||+++++....+.+|.. ..+.+++|+|+++.+++++.|++|++||+.++.
T Consensus 313 sv~~~~s~~g~~~laS~S~----D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~ 388 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAV----DGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388 (524)
T ss_dssp EEEEECCTTSCCEEEEEET----TSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT
T ss_pred EEEEEcCCCCCeEEEEecc----CCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc
Confidence 99 578888 89999987 99999999999888777776654 247889999999999999999999999999988
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.+..+..|. ..|.+++|+|+|++|++|+.||+|++|+...
T Consensus 389 ~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 389 AVHPLVSRE--TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCEEEEECS--SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred cceeeecCC--CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 877776654 4899999999999999999999999999643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=315.90 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=207.6
Q ss_pred eccCCCCCEEEEEE-----cC-CCCEEEEEeCCCeEEEEEecCCCc----cceeeeeecCcCCeeEEEEecCCCceEEEE
Q 001178 404 IVKDSSISVSRVAW-----SP-DGNFIGVAFTKHLIHLYTYQGSND----LCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~-----sp-dg~~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s 473 (1131)
++.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 68899999999999 77 999999999999999999976542 123346789999999999999999 8999
Q ss_pred EcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEE
Q 001178 474 CGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLY 549 (1131)
Q Consensus 474 ~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 549 (1131)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+... ...... .|...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999 88899999999999999999965 5589999999999999999743 333322 56778999999
Q ss_pred ccCC----------CEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 550 SADG----------SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 550 s~~g----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++ .++++++. ++.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 78999886 99999999 45677778888765 899999999999999999999999999944
Q ss_pred -CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 620 -VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 -~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
......+.. .+ .|.+++|+|++.+++++ .|+.|++|++.++
T Consensus 245 ~~~~~~~~~~-~~--~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 LTYPQREFDA-GS--TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp CSSCSEEEEC-SS--CEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred CcccceeecC-CC--cEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 444444432 22 69999999999887755 5778999998765
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=327.08 Aligned_cols=294 Identities=15% Similarity=0.199 Sum_probs=244.0
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
....+ +|...|++++|+|+|..+||+|+.||.|+|||+.+++..... ...+|...|.+++|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~ 127 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFN 127 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeC
Confidence 33344 599999999999999337999999999999999987765310 134799999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 419 P-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 419 p-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|.
T Consensus 128 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~ 204 (383)
T 3ei3_B 128 QFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHK 204 (383)
T ss_dssp TTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSS
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCC
Confidence 9 789999999999999999986 33433333345568899999999999 8999999999999998899999999999
Q ss_pred cCeEEEeecccCCcc-EEEEEecCCeEEEEeCCC----CceeEEecCCCceEEEEEEcc-CCCEEEEEeecCCCCceEEE
Q 001178 498 APVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDN----VGSRVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~i 571 (1131)
..|.+++|++. +. ++++++.|+.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++
T Consensus 205 ~~v~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~i 277 (383)
T 3ei3_B 205 AKVTHAEFNPR--CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRV 277 (383)
T ss_dssp SCEEEEEECSS--CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEE
T ss_pred CcEEEEEECCC--CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEE
Confidence 99999999764 45 899999999999999987 3344444 5888999999999 9999999986 899999
Q ss_pred EeCCCCeeeEEEecccC----------------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCc
Q 001178 572 WNESEGALKRTYIGFRK----------------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSL 635 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i 635 (1131)
||+.+++....+.++.. ..+..++|+|++.+ +++.||.|++||+.+++.+..+..+.+...+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 99999888777765431 23334566666665 6678999999999999999999876555577
Q ss_pred ceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 636 PRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 636 ~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
..++|+|++++|++++ |+.|++|++.+
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8889999999999997 99999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.59 Aligned_cols=290 Identities=14% Similarity=0.295 Sum_probs=232.7
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC------------------ceEEEEEEccCCCEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG------------------LWCTTMLYSADGSRL 556 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~~g~~l 556 (1131)
+|...|.+++|+| ++++|++++ ++.+++|++.++.....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 6999999999965 568898876 7899999999887776655432 248999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.|++|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999998766 89999999999999999999999999999999887776443 689
Q ss_pred eEEEcC-CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcc
Q 001178 637 RLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPS 715 (1131)
Q Consensus 637 ~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~ 715 (1131)
+++|+| +++++++++.|+.|++||..++. ....+.. .
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~-------------------------~---------------- 248 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDS-------------------------E---------------- 248 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecc-------------------------c----------------
Confidence 999999 89999999999999999986651 1000000 0
Q ss_pred ccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 716 TILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
.....
T Consensus 249 --------------------------------------------~~~~~------------------------------- 253 (393)
T 1erj_A 249 --------------------------------------------NESGT------------------------------- 253 (393)
T ss_dssp ------------------------------------------------C-------------------------------
T ss_pred --------------------------------------------ccCCC-------------------------------
Confidence 00001
Q ss_pred ecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCC-----------
Q 001178 796 WNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMN----------- 863 (1131)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~----------- 863 (1131)
+|...|.+++|+|+|++|++++ |++|++||+.+
T Consensus 254 -----------------------------------~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 254 -----------------------------------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -----------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred -----------------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 2444555555555555555555 45555555443
Q ss_pred -ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEcc------CCCEEEEEe
Q 001178 864 -FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST------NLNILVSSG 936 (1131)
Q Consensus 864 -~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~------dg~~l~s~~ 936 (1131)
+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++ ++++|++++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 345667788999999999999 899999999999999999999999999999999999999986 688999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||+|++|++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999865
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=351.35 Aligned_cols=531 Identities=11% Similarity=0.042 Sum_probs=369.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------CCcEE
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIR 481 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~ 481 (1131)
+...+.+.+||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999995 58888776 68999999887532 4778999999999999999 5666543 34799
Q ss_pred EEeCCCceeEEecCCccCe-------EEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCCCceEEEEE
Q 001178 482 VWDLSGRKLFQFEGHEAPV-------YSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1131)
+||..+.....+..|...+ ..++|+| ||+++++++.+ ..|..|++.++.... +..+ ....+.
T Consensus 84 ~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~~ 158 (1045)
T 1k32_A 84 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHIL 158 (1045)
T ss_dssp EEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEEE
T ss_pred EEECCCCCeEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Ccceee
Confidence 9996666688889998888 8999965 55677777754 357777776654432 2222 234567
Q ss_pred EccCCCEEEEEeecCC--------CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-
Q 001178 549 YSADGSRLFSCGTSKE--------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN- 619 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~- 619 (1131)
|+| | ++++++...+ ++....+|....+.....+.+|.. .+.++.|+++ ..+++++.++.+.+|.+..
T Consensus 159 ~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~ 234 (1045)
T 1k32_A 159 FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVGH-RIYFITDIDGFGQIYSTDLD 234 (1045)
T ss_dssp EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEETT-EEEEEECTTSSCEEEEEETT
T ss_pred eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeCC-EEEEEEeccCceEEEEEeCC
Confidence 999 8 7777642111 122344443222233445555544 8899999988 5666777889999998653
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
+.....+..+. .+...+|+|||+.++.+ .++.|.+|+.... . +..+..+..
T Consensus 235 g~~~~~l~~~~---~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~-l~~l~~~~~----------------------- 285 (1045)
T 1k32_A 235 GKDLRKHTSFT---DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-K-IEKIEIGDL----------------------- 285 (1045)
T ss_dssp SCSCEECCCCC---SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-C-EEECCCCCC-----------------------
T ss_pred CCcceEecCCC---CcceeeEcCCCCEEEEE-eCCEEEEecCCce-E-eeeeccCcc-----------------------
Confidence 33334443332 46778999999988887 4889999987322 1 101100000
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee-cC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT-NS 778 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~ 778 (1131)
.....| ..+...+..++|+ |+
T Consensus 286 ---------------------------------------~~~~~~-------------------~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 286 ---------------------------------------ESPEDR-------------------IISIPSKFAEDFSPLD 307 (1045)
T ss_dssp ---------------------------------------CBCCSE-------------------EEECGGGGEEEEEECG
T ss_pred ---------------------------------------cccccc-------------------cccccccceeeecCCC
Confidence 000000 0145678899999 99
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCC-CeeEEEecCCCCEEEEEe-CCeE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAED-VVPCVALSKNDSYVMSAG-GGKV 856 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~i~~l~~s~dg~~la~~~-dg~i 856 (1131)
|+.+++++ ++.+.+|++.. +.... +. .+.. .+..++|+ ||+.|+.++ ++.+
T Consensus 308 G~~la~~~-~~~i~~~~~~~----------------------~~~~~--~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSG----------------------TYVLK--VP-EPLRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTS----------------------SBEEE--CS-CCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred CCEEEEEE-cCEEEEEcCCC----------------------CceEE--cc-CCCcceEEeeeEc-CCCeEEEEECCCce
Confidence 99998887 77787776533 22111 11 2455 78899999 999999988 5678
Q ss_pred E-EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEE
Q 001178 857 S-LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSS 935 (1131)
Q Consensus 857 ~-vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 935 (1131)
. +|++.+++... +..+...+..++|+| ++++||+++.++.|++||+.+++....+.+|.+.+.+++|||||++|+++
T Consensus 361 ~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~ 438 (1045)
T 1k32_A 361 LGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 438 (1045)
T ss_dssp EEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred EEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEE
Confidence 8 89998876554 347778899999999 89999999999999999999999888888899999999999999999988
Q ss_pred eCCC----------cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCccc------
Q 001178 936 GSDA----------QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMEC------ 998 (1131)
Q Consensus 936 ~~Dg----------~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~------ 998 (1131)
+.++ .|++||+.+++.. .... +...+..++|+|||++|++.+ ++...+|+......
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~g~~~-----~l~~--~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~ 511 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEGRKIF-----AATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVS 511 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTEEE-----ECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCB
T ss_pred ecCccccccCCCCCeEEEEECCCCcEE-----EeeC--CCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCc
Confidence 7654 8999999986521 1111 125677899999999988765 44455554322111
Q ss_pred ----------------------------------ceeeecCCCCCCCeEEEEEccCCCEEEE-------------EecCC
Q 001178 999 ----------------------------------IRQWVPQDVLSSPISSAAYSCNSQLIYA-------------TFTDG 1031 (1131)
Q Consensus 999 ----------------------------------~~~~~~~~~~~~~v~~i~~s~dg~~l~s-------------~~~dg 1031 (1131)
.........+...+..++|+|||+++++ .+.+.
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~ 591 (1045)
T 1k32_A 512 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591 (1045)
T ss_dssp EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred eeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCc
Confidence 0001111123578999999999998885 12345
Q ss_pred cEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1032 SIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.|.+||+.+++...... .+..+.|+| |+..|++++.| .|++|++.+++
T Consensus 592 ~l~~~d~~~~~~~~l~~----------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 592 VLLKYDVKTRKVTEVKN----------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEETTTCCEEEEEE----------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred eEEEEECCCCcEEEeec----------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 78889998887532220 122578889 67889988877 79999998766
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=335.50 Aligned_cols=322 Identities=15% Similarity=0.206 Sum_probs=264.5
Q ss_pred cccCCCCCcccccCCCccc-ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeeccccccc
Q 001178 320 ATYPVPSQQATWSLDDLPR-AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSM 398 (1131)
Q Consensus 320 ~~~s~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 398 (1131)
++++.++.+.+|....... .....+.|...|++++|+|+++ +|++|+.||.|+|||+.+......
T Consensus 39 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~------------- 104 (416)
T 2pm9_A 39 ANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAIN------------- 104 (416)
T ss_dssp SSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCC-------------
T ss_pred cccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCC-eEEEEccCCeEEEeeccccccccc-------------
Confidence 4557778888888876543 3555677999999999999998 489999999999999987211100
Q ss_pred ceeceeccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCC------ccceeeeeecCcCCeeEEEEecCCCceEE
Q 001178 399 MLQAAIVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSN------DLCQSLEIDAHVGGVNDLAFSYPNKQLCI 471 (1131)
Q Consensus 399 ~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~------~~~~~~~~~~h~~~V~~l~~s~d~~~~~l 471 (1131)
....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ .......+.+|...|.+++|+|++.. ++
T Consensus 105 --~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l 181 (416)
T 2pm9_A 105 --SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH-VF 181 (416)
T ss_dssp --EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTT-EE
T ss_pred --chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCc-EE
Confidence 01146789999999999998 8999999999999999999876 33322345689999999999999433 89
Q ss_pred EEEcCCCcEEEEe-CCCceeEEecCC------ccCeEEEeecccCCccEEEEEecCC---eEEEEeCCCC-ceeEEec-C
Q 001178 472 VTCGDDKLIRVWD-LSGRKLFQFEGH------EAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDNV-GSRVDYD-A 539 (1131)
Q Consensus 472 ~s~s~d~~i~iwd-~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~-~~~~~~~-~ 539 (1131)
++++.|+.|++|| .+++.+..+..| ...|.+++|++.. ..++++++.|+ .|++||+++. .....+. .
T Consensus 182 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 9999999999999 778888888776 7899999997643 26899999999 9999999986 4555666 7
Q ss_pred CCceEEEEEEcc-CCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEc
Q 001178 540 PGLWCTTMLYSA-DGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 540 ~~~~v~~~~~s~-~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~ 617 (1131)
|...|.+++|+| ++++|++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++ .++++++.||.|++|++
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred ccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 888999999999 9999999986 89999999999999999998765 89999999999 89999999999999999
Q ss_pred CCCeEEEEEec--------------------c-------------CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 618 DNVNMLTSTEA--------------------E-------------GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 618 ~~~~~~~~~~~--------------------~-------------~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++........ + .+...+.+++|+|+|++|++++.|+.|+||++.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 336 QNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 87653221100 0 03446779999999999999999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=320.93 Aligned_cols=297 Identities=14% Similarity=0.166 Sum_probs=250.5
Q ss_pred eec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 342 CTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 342 ~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
..+ +|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQA 73 (397)
T ss_dssp EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEecc
Confidence 344 4999999999999 4 69999999999999999887221100 01146689999999999999
Q ss_pred ----C---CEEEEEeCCCeEEEEEecCCCccc--eeeeeecC-----cCCeeEEEEe----cCCCceE-EEEEcCCCcEE
Q 001178 421 ----G---NFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAH-----VGGVNDLAFS----YPNKQLC-IVTCGDDKLIR 481 (1131)
Q Consensus 421 ----g---~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h-----~~~V~~l~~s----~d~~~~~-l~s~s~d~~i~ 481 (1131)
| ++|++++.|+.|++||+.+++... ....+.+| ...|.+++|+ |+++ + |++++.|+.|+
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 999999999999999999877510 02356778 5899999999 9999 7 99999999999
Q ss_pred EEe-CC------CceeE-----Ee-------cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC---
Q 001178 482 VWD-LS------GRKLF-----QF-------EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--- 539 (1131)
Q Consensus 482 iwd-~~------~~~~~-----~~-------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--- 539 (1131)
+|| .. ++.+. .+ ..|...|.+++|++ ++ ++++++.||.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 55 56665 66 44889999999965 55 999999999999999999888888888
Q ss_pred C---CceEEEEEEccCCCEEEEEeecCCCC---ceEEEEeCCCCeeeEEEec-------------ccCCceEEEEEeCCC
Q 001178 540 P---GLWCTTMLYSADGSRLFSCGTSKEGD---SHLVEWNESEGALKRTYIG-------------FRKKSAGVVQFDTTR 600 (1131)
Q Consensus 540 ~---~~~v~~~~~s~~g~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~ 600 (1131)
| ...|.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999887 554 89999999999
Q ss_pred CEEEEEEcCCcEEEEEcCCCeEEEEEe------cc-------------CCCCCcceEEEcCCC----------CEEEEEE
Q 001178 601 NRILAAGEDNQIKFWDMDNVNMLTSTE------AE-------------GGLPSLPRLRFNKEG----------NLLVVTT 651 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~i~~v~~sp~~----------~~l~~~~ 651 (1131)
++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999999888 43 014489999999998 7999999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999999775
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=342.07 Aligned_cols=343 Identities=10% Similarity=0.084 Sum_probs=232.2
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC
Q 001178 408 SSISVSRVAWSPDG---------NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK 478 (1131)
Q Consensus 408 h~~~V~~~~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~ 478 (1131)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 56789999999987 799999866420 01368888 799999999
Q ss_pred cEEEEe-CCCcee----EEecCCccCeEEEeeccc----CCccEEEEEecCCeEEEEeCCCCce-----------eEEec
Q 001178 479 LIRVWD-LSGRKL----FQFEGHEAPVYSVCPHQK----ENIHFIFSTAVDGKIKAWLYDNVGS-----------RVDYD 538 (1131)
Q Consensus 479 ~i~iwd-~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~ 538 (1131)
+|+||| ..++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555432 346678899999999986 3467999999999999999976532 23567
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEEEecccCCceEEE--EEeCCC-CEEEEEEcCCcEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRTYIGFRKKSAGVV--QFDTTR-NRILAAGEDNQIKF 614 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i 614 (1131)
.|...|.+++|++++ .|++++. |+.|++||++++. +...+.+|.. .|.++ +|++++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999864 7888886 9999999998764 4556777665 89988 578887 89999999999999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999988766666554432357899999999999999999999999976541 00000
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
.
T Consensus 394 ---------------------------------------------------------------------~---------- 394 (524)
T 2j04_B 394 ---------------------------------------------------------------------V---------- 394 (524)
T ss_dssp ---------------------------------------------------------------------E----------
T ss_pred ---------------------------------------------------------------------e----------
Confidence 0
Q ss_pred eecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-C
Q 001178 775 YTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G 853 (1131)
Q Consensus 775 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d 853 (1131)
+|...|.+++|+|+|++|++|+ |
T Consensus 395 --------------------------------------------------------gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 395 --------------------------------------------------------SRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --------------------------------------------------------ECSSCEEEEECCSSCCBCEEEETT
T ss_pred --------------------------------------------------------cCCCceEEEEeCCCCCeEEEEECC
Confidence 2455555666666666666655 5
Q ss_pred CeEEEEECCCceeEEEEe-----CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee-cceeEEeecccccCeeEEEEcc
Q 001178 854 GKVSLFNMMNFKVMTTFM-----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s~ 927 (1131)
++|++||+... .+.... .+...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|.+.|.+|+|+|
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECC
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCC
Confidence 66666665432 111111 0112466889999 666442 222 33344433 5677888999999999999999
Q ss_pred CCC---EEEEEeCCCcEEEEEcCC
Q 001178 928 NLN---ILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 928 dg~---~l~s~~~Dg~v~lwd~~~ 948 (1131)
++. +||+|+.||.|+||++..
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 964 999999999999999876
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=333.85 Aligned_cols=293 Identities=18% Similarity=0.260 Sum_probs=236.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNF 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~ 423 (1131)
.|...|+|++|+|.+..+||+|+.||+|+|||+.+++.... ..+.+|.+.|++|+|+| |+.+
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~~ 179 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTNQ 179 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTTE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCCE
Confidence 48899999999996555799999999999999988764321 12568999999999998 7899
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
|++|+.||+|++||++++. .........+...+.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.++
T Consensus 180 l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 180 FYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred EEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence 9999999999999998753 222222233455789999999999 8999999999999998888999999999999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
+|+|..+ .++++++.|+.|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.++...
T Consensus 257 ~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 9987543 588899999999999998766443 33467789999999999999999987 999999999999888
Q ss_pred EEEecccCC-----ceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceE-EEcC
Q 001178 581 RTYIGFRKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL-RFNK 642 (1131)
Q Consensus 581 ~~~~~~~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v-~~sp 642 (1131)
..+..|... ......|+|++..+++++ .++.|++||..+++.+..+..+ +...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEECC
Confidence 777665431 122356777777666654 3467999999999988877543 33367777 6999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|.+|++|+ |+.|+||++.++
T Consensus 411 dg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEc-CCcEEEEECCcC
Confidence 999998875 789999999877
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=314.18 Aligned_cols=286 Identities=13% Similarity=0.126 Sum_probs=252.5
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
..+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++
T Consensus 28 l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSS
T ss_pred EEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcCCCC
Confidence 346999999999999998 59999999999999999887664 4678999999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----CcEEEEe-CCCc--------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWD-LSGR-------- 488 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd-~~~~-------- 488 (1131)
+|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 99999999999999999987554 334 888999999999999 78999888 9999999 3332
Q ss_pred ---eeEEecCCcc--CeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 489 ---KLFQFEGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 489 ---~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++++|++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 238 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR- 238 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-
Confidence 3445556666 899999965 557999999999999999998 6677788888999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC--------------cEEEEEcCCCeEEEEEec
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--------------QIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~ 628 (1131)
++.|++||+.+++.+..+. ....+..++|+|+++++++++.++ .+++||..+++.+..+..
T Consensus 239 ---d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 239 ---DTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp ---TSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred ---CceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 8999999999999988887 344799999999999999999888 899999999999988876
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 314 ~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 314 HFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 654 8999999999999999999999999999765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=306.49 Aligned_cols=287 Identities=17% Similarity=0.273 Sum_probs=249.7
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++.+++ +|.+.|++++| |+++ +|++|+.||.|+|||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344555 49999999999 9898 59999999999999998876554 46688999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCc
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHE 497 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~ 497 (1131)
+|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876544455578899999999999 456 799999999999999 778888999999
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
..+.++++.+. ++..+++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+++
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999762 457999999999999999 3445555555 778999999999998 777775 89999999999
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999988765 89999999998 699999999999999999999988877654 799999999998 6679999999
Q ss_pred EEEecCCC
Q 001178 657 KILANADG 664 (1131)
Q Consensus 657 ~iw~~~~~ 664 (1131)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999766
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=316.88 Aligned_cols=274 Identities=19% Similarity=0.301 Sum_probs=239.9
Q ss_pred cCCCcE-EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 345 HQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 345 ~h~~~V-~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+|.+.| +| ++++|+ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +.+
T Consensus 116 ~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 116 GHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--TTE
T ss_pred ccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--CCE
Confidence 487765 55 555676 59999999999999999988765 467999999999998 679
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...|.+
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 244 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEE
Confidence 9999999999999999986543 678999999999996 44 799999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
+++ ++.++++++.||.|++||+++......+..|...|.++.| ++.++++++. ++.|++||+++++.+..
T Consensus 245 ~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~ 314 (445)
T 2ovr_B 245 VQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHT 314 (445)
T ss_dssp EEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred EEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEE
Confidence 988 4578999999999999999999888899999999999999 8899999986 89999999999999999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+ .+...|.+++|+ ++++++++.||.|++||+
T Consensus 315 ~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 315 LTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 988765 6777766 4679999999999999999999998888753 244578999996 579999999999999998
Q ss_pred CCC
Q 001178 662 ADG 664 (1131)
Q Consensus 662 ~~~ 664 (1131)
.++
T Consensus 390 ~~~ 392 (445)
T 2ovr_B 390 KTG 392 (445)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=308.76 Aligned_cols=299 Identities=20% Similarity=0.312 Sum_probs=245.4
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCCCcc--ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
+++||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876542 23446789999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCC--CEE
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADG--SRL 556 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g--~~l 556 (1131)
++|+ ..+........+...+....+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 9999 77777777778888888888754 45789999999999999987655443 445677889999999875 456
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||.++++.+..+.+|.. .|.+++|+|++++|++++.||.|++||+.+.+.+..+..+. .+.
T Consensus 189 ~s~~~----d~~i~i~d~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~ 260 (340)
T 4aow_A 189 VSCGW----DKLVKVWNLANCKLKTNHIGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---IIN 260 (340)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCEEEEEECCCCceeeEecCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eEE
Confidence 67765 88999999999999999998766 89999999999999999999999999999999988887553 689
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccc
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPST 716 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~ 716 (1131)
++.|+|++.++ +++.|+.|++||+.++. ....+....
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~-~~~~~~~~~----------------------------------------- 297 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKI-IVDELKQEV----------------------------------------- 297 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTE-EEEEECCC------------------------------------------
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCe-EEEeccccc-----------------------------------------
Confidence 99999987655 56679999999987652 111110000
Q ss_pred cccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEee
Q 001178 717 ILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKW 796 (1131)
Q Consensus 717 ~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~ 796 (1131)
... ....|...|.+++|+|+|++|++++.||.|++|++
T Consensus 298 ---------------------------------------~~~---~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 298 ---------------------------------------IST---SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ------------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ---------------------------------------eee---eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 000 00237889999999999999999999999999998
Q ss_pred cCC
Q 001178 797 NRT 799 (1131)
Q Consensus 797 ~~~ 799 (1131)
.++
T Consensus 336 ~tG 338 (340)
T 4aow_A 336 TIG 338 (340)
T ss_dssp EC-
T ss_pred CCc
Confidence 765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=320.42 Aligned_cols=278 Identities=18% Similarity=0.261 Sum_probs=241.1
Q ss_pred ccCCCcE-EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 344 MHQGSSV-VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 344 ~~h~~~V-~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+|...| .|+.|+ ++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++
T Consensus 118 ~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~~- 174 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHGG- 174 (464)
T ss_dssp ECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECSTT-
T ss_pred cCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCCC-
Confidence 3577774 666664 45 69999999999999999988665 467999999999999998
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-CCCc-----------
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGR----------- 488 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~----------- 488 (1131)
+|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++|| .++.
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 99999999999999999987543 6789999999999995 555 899999999999999 4443
Q ss_pred ------------eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 489 ------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 489 ------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
.+..+.+|...|.++. +++.++++++.||.|++||+++.+....+..|...|.+++|+|+++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred ceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 2556788999999884 345799999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
++++. ++.|++||+.+++.+..+.+|.. .+.+++|+ ++++++++.||.|++||+.++......... ..+.
T Consensus 326 ~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~ 395 (464)
T 3v7d_B 326 ISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSA 395 (464)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCC
T ss_pred EEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCcc
Confidence 99986 89999999999999999998766 89999997 589999999999999999998776665422 2578
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++|++++.++++++ ||.|++||+.++
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 889999999999998 899999999876
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=316.57 Aligned_cols=316 Identities=19% Similarity=0.332 Sum_probs=271.6
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEe
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWL 527 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd 527 (1131)
.+.+|.+.|.. +++++++ ++++|+.|++|++|| .+++.+..+.+|...|.+++|+ +.++++++.||.|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57889887533 3555677 899999999999999 8899999999999999999985 36999999999999999
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
+.+++....+..|...|.++.++ ++.+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999988999999999999995 577999886 89999999999999999988765 8888888 778999999
Q ss_pred cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 608 EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 608 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
.||.|++||+.+++.+..+..+.. .|.++.| ++.++++++.||.|++||+.++. ....
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~----------------- 314 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHT----------------- 314 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEE-----------------
T ss_pred CCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEE-----------------
Confidence 999999999999999888875544 7899998 78899999999999999986541 0000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
T Consensus 315 -------------------------------------------------------------------------------- 314 (445)
T 2ovr_B 315 -------------------------------------------------------------------------------- 314 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
+ .+|...+.++.+ ++++
T Consensus 315 --------------------------~-----------------------------------~~~~~~v~~~~~--~~~~ 331 (445)
T 2ovr_B 315 --------------------------L-----------------------------------TGHQSLTSGMEL--KDNI 331 (445)
T ss_dssp --------------------------E-----------------------------------CCCCSCEEEEEE--ETTE
T ss_pred --------------------------E-----------------------------------cCCcccEEEEEE--eCCE
Confidence 0 024445555555 5678
Q ss_pred EEEEe-CCeEEEEECCCceeEEEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee-----ccccc
Q 001178 848 VMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL-----KGHQK 918 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~-----~~h~~ 918 (1131)
+++++ ||.|++||+.+++.+..+.. |...|.+++|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+
T Consensus 332 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 408 (445)
T 2ovr_B 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGG 408 (445)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCc
Confidence 88888 89999999999999999886 78889999995 469999999999999999999988887 57899
Q ss_pred CeeEEEEccCCCEEEEEeCCCc----EEEEEcCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~----v~lwd~~~ 948 (1131)
.|++++|+|++.+|++++.||+ |.+||++.
T Consensus 409 ~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 409 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999999999999999999998 99999876
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=315.54 Aligned_cols=289 Identities=12% Similarity=0.207 Sum_probs=239.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcC---CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCG---DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
+|...|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 399999999999999878888887 99999999998875431 23378999999999999
Q ss_pred --CCEEEEEeCCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEE------ecCCCceEEEEEcCCCcEEEEe-CCCc-e
Q 001178 421 --GNFIGVAFTKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAF------SYPNKQLCIVTCGDDKLIRVWD-LSGR-K 489 (1131)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~------s~d~~~~~l~s~s~d~~i~iwd-~~~~-~ 489 (1131)
|++|++|+.||.|++||+.+++ .+ ..+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPV---YSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCS---EEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccE---EEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999876 33 367899999999954 67888 899999999999999 5555 6
Q ss_pred eEEecCCcc----CeEEEeecc--cCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc---CCCEEEEEe
Q 001178 490 LFQFEGHEA----PVYSVCPHQ--KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA---DGSRLFSCG 560 (1131)
Q Consensus 490 ~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~ 560 (1131)
+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++...... ..+...|.+++|+| ++.++++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 231 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATS 231 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEEC
Confidence 777766555 788888432 45678999999999999999998776443 55677899999999 999999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEe-----cccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC--------------
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYI-----GFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV-------------- 620 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------- 620 (1131)
. ++.|++||+++++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+
T Consensus 232 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~ 306 (357)
T 3i2n_A 232 L----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG 306 (357)
T ss_dssp S----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC
T ss_pred C----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccc
Confidence 6 8999999998877665554 6544 899999999998 8999999999999999754
Q ss_pred -----eEEEEEeccCCCCCcceEEEcCCCCEEE-EEECCCcEEEEecCCC
Q 001178 621 -----NMLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADG 664 (1131)
Q Consensus 621 -----~~~~~~~~~~~~~~i~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~ 664 (1131)
+.+..+..+ ...|.+++|+|++++++ +++.||.|++|++.+.
T Consensus 307 ~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 307 VAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455544 44899999999999998 7999999999998765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=315.64 Aligned_cols=292 Identities=15% Similarity=0.104 Sum_probs=244.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc--ccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE--RLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
|.++|++++|+|+|+ +|++|+.||.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 68999999999999998876 332 46689999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce---e-EEecCCcc
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK---L-FQFEGHEA 498 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~---~-~~~~~h~~ 498 (1131)
|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeee-eeEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 999999999999999887633 2334577999999999999999 899999999999999 54442 2 33467899
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCC------------------CCceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYD------------------NVGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.|.+++|++ ++.++++++.||.|++||++ .......+..+...|.+++|+|++++|++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999976 55799999999999999954 4566667778888999999999999999998
Q ss_pred ecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEE-------------
Q 001178 561 TSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTS------------- 625 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~------------- 625 (1131)
. ++.|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++....
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 6 89999999999999999988655 89999999999877777 999999999987 431100
Q ss_pred -----------------------Eec-cCCCCCcceEEEc-CCC---CEEEEEECCCcEEEEecCCCchhh
Q 001178 626 -----------------------TEA-EGGLPSLPRLRFN-KEG---NLLVVTTADQGIKILANADGLRAL 668 (1131)
Q Consensus 626 -----------------------~~~-~~~~~~i~~v~~s-p~~---~~l~~~~~dg~i~iw~~~~~~~~~ 668 (1131)
... .+|...|++++|+ ++| .+|++++.||.|++|++.++...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~ 366 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHC
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhh
Confidence 111 2455689999866 666 999999999999999997764433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-32 Score=316.09 Aligned_cols=342 Identities=14% Similarity=0.168 Sum_probs=269.2
Q ss_pred EEecCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 535 VDYDAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 535 ~~~~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
..+.+|... +.++.+ +++++++++. ++.|++||+.+++.+..+.+|.. .|.+++|++++ .+++|+.||+|+
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECSTT-EEEEEETTSCEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCCc-CEEEEEEcCCC-EEEEEeCCCCEE
Confidence 355666665 455555 5789999986 99999999999999999998766 89999999987 999999999999
Q ss_pred EEEcCCCeEEEEEeccCCCCCcceEEEc--CCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcc
Q 001178 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFN--KEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSA 691 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~~~i~~v~~s--p~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1131)
+||+.+++.+..+..+.. .|.+++|+ +++.++++++.||.|++||+.++.........
T Consensus 187 vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~------------------ 246 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE------------------ 246 (464)
T ss_dssp EEETTTTEEEEEECCCSS--CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------------------------
T ss_pred EEECCCCcEEEEECCCCC--ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc------------------
Confidence 999999999888875544 89999998 57899999999999999998765211100000
Q ss_pred ceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceE
Q 001178 692 VVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVA 771 (1131)
Q Consensus 692 ~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~ 771 (1131)
....
T Consensus 247 ----------------------------------------------------------------------------~~~~ 250 (464)
T 3v7d_B 247 ----------------------------------------------------------------------------HDYP 250 (464)
T ss_dssp ----------------------------------------------------------------------------CCSS
T ss_pred ----------------------------------------------------------------------------CCcc
Confidence 0000
Q ss_pred EEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 772 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
.+.+.+++...+.. ...+|...+.++ ++++++++++
T Consensus 251 ~~~~~~~~~~~~~~------------------------------------------~~~~~~~~v~~~--~~~~~~l~~~ 286 (464)
T 3v7d_B 251 LVFHTPEENPYFVG------------------------------------------VLRGHMASVRTV--SGHGNIVVSG 286 (464)
T ss_dssp EEESCGGGCTTEEE------------------------------------------EECCCSSCEEEE--EEETTEEEEE
T ss_pred eEeeccCCCeEEEE------------------------------------------EccCccceEEEE--cCCCCEEEEE
Confidence 01111111100000 001466666665 6889999999
Q ss_pred e-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCC
Q 001178 852 G-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 852 ~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+ ||.|++||+.+++++..+.+|...|.+++|+| ++.++++|+.||.|++||+.+++++..+.+|...|.+++|+ +.
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DK 363 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CC
Confidence 8 89999999999999999999999999999999 89999999999999999999999999999999999999997 57
Q ss_pred EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCC
Q 001178 931 ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSS 1010 (1131)
Q Consensus 931 ~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 1010 (1131)
+|++++.||.|++||+.+++..... ++...+..++|++++.++++++|+.|++||+.+++.+..+... |..
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~--~~~ 434 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILK--DAD 434 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE-------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTT--TCS
T ss_pred EEEEEeCCCcEEEEECCCCceeeee-------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhcc--CCC
Confidence 9999999999999999986543222 1225678899999999999999999999999999988763322 378
Q ss_pred CeEEEEEccCCCEEEEEecCCcEEEEE
Q 001178 1011 PISSAAYSCNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~dg~i~vwd 1037 (1131)
.|++++|+ ++.++++++.||.+.+|-
T Consensus 435 ~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 435 QIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred cEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999997 445555666677666554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=315.72 Aligned_cols=290 Identities=15% Similarity=0.250 Sum_probs=242.0
Q ss_pred cCCCcEEEEEEecC---CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 345 HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 345 ~h~~~V~~~~fspd---g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999985 444566666778999999998776542 1 11122347889999999999
Q ss_pred ---CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CCCceeEEe--
Q 001178 421 ---GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-- 493 (1131)
Q Consensus 421 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-- 493 (1131)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999876543 6788999999999999 777 899999999999999 778888887
Q ss_pred -cCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe----------------------------cCCCceE
Q 001178 494 -EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY----------------------------DAPGLWC 544 (1131)
Q Consensus 494 -~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------------------~~~~~~v 544 (1131)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+ ..+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 78999999999976 5579999999999999999876543322 2377889
Q ss_pred EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--------------eEEEecccCCceEEEEEeCC--CCEEEEEEc
Q 001178 545 TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--------------KRTYIGFRKKSAGVVQFDTT--RNRILAAGE 608 (1131)
Q Consensus 545 ~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~ 608 (1131)
.+++|+ ++++++++. ++.|++||+.++.. +..+..|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999886 89999999887643 677777655 7899999999 999999999
Q ss_pred CCcEEEEEcCCCe----EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 609 DNQIKFWDMDNVN----MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 609 dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875 34466666545689999999999999999999999999975
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=321.18 Aligned_cols=310 Identities=13% Similarity=0.179 Sum_probs=247.3
Q ss_pred ccCCCCCcc----cccCCCcccceeeec-c-CCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCC---Cccccccccee
Q 001178 321 TYPVPSQQA----TWSLDDLPRAVACTM-H-QGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGL---RERLVSKPFKI 390 (1131)
Q Consensus 321 ~~s~~~~~~----~~~~~~~~~~~~~~~-~-h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~---~~~~~~~~~~~ 390 (1131)
.|+|+++.. .|. ..++++..+ . |.+.|++++|+| +++ +||+|+.||+|+|||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~~w~---~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~----- 104 (437)
T 3gre_A 34 EFGPIQEIVRSPNMGN---LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS----- 104 (437)
T ss_dssp GGCCCCCCCCCCCGGG---CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----
T ss_pred hcCCcccccccccccc---ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----
Confidence 455665533 343 345566666 4 889999999999 998 699999999999999876 331110
Q ss_pred ecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEec---CCCcccee-------eeeec--CcCCee
Q 001178 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ---GSNDLCQS-------LEIDA--HVGGVN 458 (1131)
Q Consensus 391 ~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~-------~~~~~--h~~~V~ 458 (1131)
....+|...|.+++|+|++++|++|+.||+|++||+. +++..... ..+.. +...+.
T Consensus 105 ------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 105 ------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp ------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred ------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 0122589999999999999999999999999999995 44433211 01112 556677
Q ss_pred EEE--EecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC--CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce
Q 001178 459 DLA--FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 459 ~l~--~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~ 533 (1131)
++. +++++. ++++|+.|+.|++|| .+++.+..+.+ |...|.+++|++ ++.+|++++.||.|++||+++...
T Consensus 173 ~~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~ 248 (437)
T 3gre_A 173 RMRAFVNEEKS--LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVL 248 (437)
T ss_dssp EEEEEECSSCE--EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccE
Confidence 777 456777 899999999999999 88899999988 899999999965 468999999999999999999888
Q ss_pred eEEec-CCCceEEEEEEc----cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc----------------------
Q 001178 534 RVDYD-APGLWCTTMLYS----ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF---------------------- 586 (1131)
Q Consensus 534 ~~~~~-~~~~~v~~~~~s----~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------------- 586 (1131)
...+. .+...|.+++++ +++.+|++++. ++.|++||+.+++.+..+.++
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 77765 677789999665 56789999876 899999999999999888765
Q ss_pred ---cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC---------------------------------
Q 001178 587 ---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG--------------------------------- 630 (1131)
Q Consensus 587 ---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------- 630 (1131)
+...|.+++|+ ++++|++++.||.|++||+.+++....+..+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 33357889999 77899999999999999999988777665421
Q ss_pred --CCCCcceEEEcCC--CCEEEEEECCCcEEEEe
Q 001178 631 --GLPSLPRLRFNKE--GNLLVVTTADQGIKILA 660 (1131)
Q Consensus 631 --~~~~i~~v~~sp~--~~~l~~~~~dg~i~iw~ 660 (1131)
+...|++++|+++ +.+|++|+.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5568999999998 78999999999999995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=320.12 Aligned_cols=350 Identities=14% Similarity=0.167 Sum_probs=246.3
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEec-----------cCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----------EGGLP 633 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 633 (1131)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....... ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577788877777777777655 899999999 999999999999999999998765443321 13455
Q ss_pred CcceEEEcC-CCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCC
Q 001178 634 SLPRLRFNK-EGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712 (1131)
Q Consensus 634 ~i~~v~~sp-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~ 712 (1131)
.|.+++|+| ++.++++++.||.|++||+.++.. ..
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~------------------------------------------- 136 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-AD------------------------------------------- 136 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EE-------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ce-------------------------------------------
Confidence 899999999 778999999999999999865410 00
Q ss_pred CccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee
Q 001178 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK 792 (1131)
Q Consensus 713 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~ 792 (1131)
T Consensus 137 -------------------------------------------------------------------------------- 136 (408)
T 4a11_B 137 -------------------------------------------------------------------------------- 136 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC---CCCEEEEEe-CCeEEEEECCCceeEE
Q 001178 793 LWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK---NDSYVMSAG-GGKVSLFNMMNFKVMT 868 (1131)
Q Consensus 793 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~ 868 (1131)
.+ .+...+.++++++ ++.++++++ ++.|++||+.+++.+.
T Consensus 137 ~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 137 VF------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp EE------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred ec------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 00 0233445566655 455888888 8999999999999999
Q ss_pred EEeCCCCCeeEEEEeCCCCc-EEEEEeCCCcEEEEEeecce-eEEee---------------cccccCeeEEEEccCCCE
Q 001178 869 TFMSPPPASTFLAFHPQDNN-IIAIGMEDSTIQIYNVRVDE-VKTKL---------------KGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~I~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~s~dg~~ 931 (1131)
.+..|...|.+++|+| ++. ++++|+.||.|++||+.++. .+..+ .+|.+.|++++|+|++++
T Consensus 181 ~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 181 ILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp EECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred eecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 9999999999999999 555 79999999999999998664 33333 579999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP 1011 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 1011 (1131)
|++++.||.|++||+.+++..........................+.+++++.++.|++||+.+++.+..+..| ...
T Consensus 260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~ 336 (408)
T 4a11_B 260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKT 336 (408)
T ss_dssp EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSC
T ss_pred EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCe
Confidence 99999999999999998765433222222222222333444455666777788999999999999999988776 789
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1012 ISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1012 v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
|++++|+|++++|++++.||.|++||+.+++.+........ ...+.|.....+.+++.|+.+++|
T Consensus 337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---------------KSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------------
T ss_pred EEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---------------ccccccccceeecccCccCceeec
Confidence 99999999999999999999999999999887655443221 123344455677888899999999
Q ss_pred ecCC
Q 001178 1092 EPSE 1095 (1131)
Q Consensus 1092 ~~~~ 1095 (1131)
+...
T Consensus 402 ~~~~ 405 (408)
T 4a11_B 402 SHPQ 405 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 8764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-31 Score=301.20 Aligned_cols=323 Identities=17% Similarity=0.235 Sum_probs=263.3
Q ss_pred eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
....+.+|...|++++|+|++++|++++. ++.|++||+.+++.+..+.+|.. .|.+++|+|++++|++++.||.|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSK----DSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEES----SSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeC----CCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeE
Confidence 33467789999999999999999999986 89999999999999999988766 89999999999999999999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-----CcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
++||+.+++.+..+.. ...+.+++|+|+++++++++.+ +.|++|++..... ...+
T Consensus 99 ~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~-~~~~---------------- 158 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA-THEL---------------- 158 (369)
T ss_dssp EEEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT-TCCE----------------
T ss_pred EEEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc-ceee----------------
Confidence 9999999999888873 2379999999999999999999 9999999865410 0000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
... ..
T Consensus 159 ---------------------------------------------------------~~~------------------~~ 163 (369)
T 3zwl_B 159 ---------------------------------------------------------TKV------------------SE 163 (369)
T ss_dssp ---------------------------------------------------------EEE------------------CS
T ss_pred ---------------------------------------------------------ccc------------------cc
Confidence 000 00
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
..+. .+ ........+.+++|+|++++
T Consensus 164 ~~~~--------------------~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 189 (369)
T 3zwl_B 164 EPIH--------------------KI----------------------------------ITHEGLDAATVAGWSTKGKY 189 (369)
T ss_dssp SCSE--------------------EE----------------------------------ECCTTCCCEEEEEECGGGCE
T ss_pred ceee--------------------ec----------------------------------cCCcCccceeEEEEcCCCCE
Confidence 0000 00 00012337899999999999
Q ss_pred EEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE
Q 001178 848 VMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 848 la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
|++++ +|.|++||+.+ ++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.+++|
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 267 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVI 267 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEe
Confidence 99998 89999999998 788999999999999999999 89999999999999999999999888887 7889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecC
Q 001178 926 STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~ 1005 (1131)
+|+++++++++.++.+.+|...... ....+++||..+++.+..+..|
T Consensus 268 ~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 268 TPLKEFIILGGGQEAKDVTTTSANE---------------------------------GKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp CSSSSEEEEEECCC----------------------------------------------CEEEEEETTTCCEEEEEECC
T ss_pred cCCCceEEEeecCCCceEEEEecCC---------------------------------CcceeEEEecCCCcchhheecc
Confidence 9999999999999988777654411 1236899999999999888777
Q ss_pred CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEe
Q 001178 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 1006 ~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1047 (1131)
...|++++|+|++++|++++.||.|++|+++++.....+
T Consensus 315 ---~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 315 ---FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ---cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 789999999999999999999999999999877654443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=319.46 Aligned_cols=303 Identities=17% Similarity=0.234 Sum_probs=231.9
Q ss_pred eEEEecccCCceEEEEEeCC-CCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEEECCCcEE
Q 001178 580 KRTYIGFRKKSAGVVQFDTT-RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVTTADQGIK 657 (1131)
Q Consensus 580 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~~~dg~i~ 657 (1131)
.....+|.. .|++++|+|. +++|++|+.||.|+|||+.+++....+...+|...|++++|+| ++.+|++++.||+|+
T Consensus 112 ~~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 334444443 7999999994 5689999999999999999887766666666777999999998 689999999999999
Q ss_pred EEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceecccc
Q 001178 658 ILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDI 737 (1131)
Q Consensus 658 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 737 (1131)
+||+.++.. .
T Consensus 191 iwd~~~~~~--~-------------------------------------------------------------------- 200 (435)
T 4e54_B 191 LQDFKGNIL--R-------------------------------------------------------------------- 200 (435)
T ss_dssp EEETTSCEE--E--------------------------------------------------------------------
T ss_pred EeeccCCce--e--------------------------------------------------------------------
Confidence 999754300 0
Q ss_pred CCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeec
Q 001178 738 SDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQ 817 (1131)
Q Consensus 738 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~ 817 (1131)
. +. .
T Consensus 201 -------------------~-------------------------~~-~------------------------------- 204 (435)
T 4e54_B 201 -------------------V-------------------------FA-S------------------------------- 204 (435)
T ss_dssp -------------------E-------------------------EE-C-------------------------------
T ss_pred -------------------E-------------------------Ee-c-------------------------------
Confidence 0 00 0
Q ss_pred CCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC
Q 001178 818 PSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED 896 (1131)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 896 (1131)
...+...+.+++|+|++++|++|+ ||.|++||+.+ +.+..+.+|...|.+++|+|++..++++|+.|
T Consensus 205 -----------~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 205 -----------SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp -----------CSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred -----------cCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 001334566789999999999998 89999999864 56677889999999999999556689999999
Q ss_pred CcEEEEEeecceeEE---eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEE
Q 001178 897 STIQIYNVRVDEVKT---KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~---~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+.|++||+.+.+... ...+|...|++++|+|||++|++++.||+|++||+.+++......................|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 999999998765443 34689999999999999999999999999999999987765443322211111123445567
Q ss_pred cCCCcEEEEEe-------------CCeEEEEeCCCcccceeeecCCCCCCCeEEE-EEccCCCEEEEEecCCcEEEEECC
Q 001178 974 HSDQVRLLVNH-------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSA-AYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 974 s~d~~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i-~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
+|++.+++++. ++.|++||..+++.+..+..+ |...|.++ +|+|||++|++|+ |+.|+||+++
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~--~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP--ESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS--SCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC--CCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 77777666542 357999999999988877543 36788887 6999999999886 8899999999
Q ss_pred CCcee
Q 001178 1040 SLRLR 1044 (1131)
Q Consensus 1040 ~~~~~ 1044 (1131)
+++..
T Consensus 430 ~gk~r 434 (435)
T 4e54_B 430 EARTR 434 (435)
T ss_dssp -----
T ss_pred cCeee
Confidence 88753
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=308.16 Aligned_cols=301 Identities=14% Similarity=0.122 Sum_probs=228.6
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCC-------CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGD-------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.-+.+|+|++|+|||+ +|++|+.| +.|+||++..+.......+. ......+.+|...|.++++
T Consensus 12 ~~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~ 81 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDA 81 (365)
T ss_dssp ECSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEE
T ss_pred CCCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEe
Confidence 3456899999999997 68888653 36999999876543211111 1112247789999988876
Q ss_pred cCCCCEEEEE-----------eCCCeEEEEEecCCCcccee------eeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 418 SPDGNFIGVA-----------FTKHLIHLYTYQGSNDLCQS------LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 418 spdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
+ ++.+++| +.|+++++|++......... .....+...+.+++|||||+.+.+++++.|++|
T Consensus 82 ~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 82 S--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp E--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred C--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 5 4566655 45788999999876432111 112334566899999999996445677789999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE--ecCCCceEEEEEEccCCCEEE
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~ 557 (1131)
+||| .+++++..+. |...|.+++|+| +++++++++.+ .+++|+..++..... ...+...|.+++|+|++++++
T Consensus 160 ~iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EEeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 9999 7888888775 778899999964 66899998855 456666666655443 345677899999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCee----eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEE-eccCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST-EAEGGL 632 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 632 (1131)
+++.+......+++|+...+.. ...+.+|.. .|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..| .
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~ 312 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--S 312 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--S
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--c
Confidence 9987544445788999876653 334556554 8999999999999999999999999999999988775 444 4
Q ss_pred CCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..|++++|+|||++|++++.|++|+||++...
T Consensus 313 ~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 313 FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 48999999999999999999999999999655
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=307.76 Aligned_cols=289 Identities=16% Similarity=0.263 Sum_probs=242.1
Q ss_pred cCCCc--EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 345 HQGSS--VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 345 ~h~~~--V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
+|.+. +.+++|++ .. +++++.||.|+|||+.+++.... ....|...|.+++|+|+++
T Consensus 89 ~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS 147 (401)
T ss_dssp TCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred CCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence 45555 44555655 44 56677899999999999876542 2234889999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C-CCceeEEecCCccCe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L-SGRKLFQFEGHEAPV 500 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~-~~~~~~~~~~h~~~v 500 (1131)
+|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++|| . .+..+..+.+|.+.|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 220 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV 220 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence 99999999999999999887544 677999999999994 45 799999999999999 3 577788899999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++|++ ++.+|++++.||.|++||+++......+..+...|.+++|+|++..+++.+ ++..++.|++||+.+++.+
T Consensus 221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~-~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG-GGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE-CCTTTCEEEEEETTTCCEE
T ss_pred eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe-cCCCCCEEEEEECCCCCEE
Confidence 9999976 568999999999999999999888888888999999999999876555543 1123899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEE
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~i 658 (1131)
..+.. ...+.+++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|++.+|++++.||.|++
T Consensus 298 ~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 298 NTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred EEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 88863 34799999999999999954 899999999999877766555555668999999999999999999999999
Q ss_pred EecCCCch
Q 001178 659 LANADGLR 666 (1131)
Q Consensus 659 w~~~~~~~ 666 (1131)
|++.++..
T Consensus 376 w~~~~~~~ 383 (401)
T 4aez_A 376 WRVYDGDH 383 (401)
T ss_dssp EECCC---
T ss_pred EECCCCcc
Confidence 99988743
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=304.68 Aligned_cols=306 Identities=15% Similarity=0.255 Sum_probs=246.9
Q ss_pred EEeCCCCeeeEEEecccCCceEEEEEeCCC-CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEE
Q 001178 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTR-NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLV 648 (1131)
Q Consensus 571 iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~ 648 (1131)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+++
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 445566677778887665 89999999999 899999999999999999988888877655666899999999 789999
Q ss_pred EEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCC
Q 001178 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 728 (1131)
+++.|+.|++||+.+.. ..
T Consensus 136 s~~~d~~i~iwd~~~~~--~~----------------------------------------------------------- 154 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSV--IQ----------------------------------------------------------- 154 (383)
T ss_dssp EEETTTEEEEEETTSCE--EE-----------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCCc--eE-----------------------------------------------------------
Confidence 99999999999975320 00
Q ss_pred CCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccc
Q 001178 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1131)
Q Consensus 729 ~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1131)
.+.
T Consensus 155 ----------------------------------------------------------------~~~------------- 157 (383)
T 3ei3_B 155 ----------------------------------------------------------------VFA------------- 157 (383)
T ss_dssp ----------------------------------------------------------------EEE-------------
T ss_pred ----------------------------------------------------------------EEe-------------
Confidence 000
Q ss_pred eeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCC
Q 001178 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDN 887 (1131)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 887 (1131)
....+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| ++
T Consensus 158 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~ 216 (383)
T 3ei3_B 158 -------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RC 216 (383)
T ss_dssp -------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SC
T ss_pred -------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CC
Confidence 0003567788999999999999998 899999999 5778889999999999999999 66
Q ss_pred c-EEEEEeCCCcEEEEEeec----ceeEEeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001178 888 N-IIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961 (1131)
Q Consensus 888 ~-~la~g~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~ 961 (1131)
. +|++|+.|+.|++||+.+ +.++..+ +|.+.|++++|+| ++++|++++.|+.|++||+.+++...........
T Consensus 217 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 217 DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC
T ss_pred CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc
Confidence 6 999999999999999998 5666666 6999999999999 9999999999999999999987764433321111
Q ss_pred -CCCC----------CCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC
Q 001178 962 -GKLP----------VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 962 -~~~~----------~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
..+. ..+..++|+|++++ +.+.|+.|++||+.+++.+..+..+. +...+..++|+||+++|++|+ |
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEEE-T
T ss_pred ccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEec-C
Confidence 0011 23344666666666 33469999999999999998887642 367788889999999999997 9
Q ss_pred CcEEEEECCC
Q 001178 1031 GSIGVFDADS 1040 (1131)
Q Consensus 1031 g~i~vwd~~~ 1040 (1131)
+.|++||+++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.25 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=223.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCC--cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLR--ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
+.+.|++++|+|+|+ +||+|+.||.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 667999999999998 6999999999999999987 3332 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc---eeEEecC-Ccc
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEG-HEA 498 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~-h~~ 498 (1131)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++|| ..++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773334456788999999999999999 799999999999999 5554 3677777 999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCC------------------CceeEEecCCCceEEEEEEccCCCEEEEEe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN------------------VGSRVDYDAPGLWCTTMLYSADGSRLFSCG 560 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 560 (1131)
.|.+++|++ ++.+|++++.|+.|++||++. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999976 558999999999999999853 2233344 7788899999999999999998
Q ss_pred ecCCCCceEEEEeCCCCee----eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe---------------
Q 001178 561 TSKEGDSHLVEWNESEGAL----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN--------------- 621 (1131)
Q Consensus 561 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------- 621 (1131)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+.....
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 6 89999999999887 777887665 89999999999999888776655 66654211
Q ss_pred ------------------------EEEEEec-----------cCCCCCcceEEEcCCC-C---EEEEEECCCcEEEEec
Q 001178 622 ------------------------MLTSTEA-----------EGGLPSLPRLRFNKEG-N---LLVVTTADQGIKILAN 661 (1131)
Q Consensus 622 ------------------------~~~~~~~-----------~~~~~~i~~v~~sp~~-~---~l~~~~~dg~i~iw~~ 661 (1131)
....... ..|...|+++.+.+.. . .+++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 1155578899876543 3 6999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=311.13 Aligned_cols=294 Identities=12% Similarity=0.119 Sum_probs=250.5
Q ss_pred eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc------eeEEecCCCceEEEEEEccC----C---CEE
Q 001178 490 LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------SRVDYDAPGLWCTTMLYSAD----G---SRL 556 (1131)
Q Consensus 490 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~s~~----g---~~l 556 (1131)
...+.+|.+.|.+++|++ .+|++++.||.|++|++.... ....+..|...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456779999999999965 699999999999999999887 67788889999999999999 9 999
Q ss_pred EEEeecCCCCceEEEEeCCCCee-----eEEEeccc----CCceEEEEEe----CCCCE-EEEEEcCCcEEEEEcCC---
Q 001178 557 FSCGTSKEGDSHLVEWNESEGAL-----KRTYIGFR----KKSAGVVQFD----TTRNR-ILAAGEDNQIKFWDMDN--- 619 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~----~~~v~~~~~s----~~~~~-l~~~~~dg~i~iwd~~~--- 619 (1131)
++++. ++.|++||+.+++. +..+..+. ...+.+++|+ |++++ |++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99986 89999999998886 78888774 4589999999 99999 99999999999999988
Q ss_pred ---CeEEE-----EEec-----cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccccc
Q 001178 620 ---VNMLT-----STEA-----EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1131)
Q Consensus 620 ---~~~~~-----~~~~-----~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1131)
++.+. .+.. ..+...|.+++|+|++ ++++++.||.|++||+.++. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~----------------- 221 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLY----------------- 221 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEE-----------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeE-----------------
Confidence 55554 5543 3345579999999999 99999999999999986541 000
Q ss_pred ccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCC
Q 001178 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1131)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1131)
T Consensus 222 -------------------------------------------------------------------------------- 221 (397)
T 1sq9_A 222 -------------------------------------------------------------------------------- 221 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCC---CCCeeEEEecC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA---EDVVPCVALSK 843 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~i~~l~~s~ 843 (1131)
.+. ....| ...|.+++|+|
T Consensus 222 --------------------------~~~--------------------------------~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 222 --------------------------NFE--------------------------------SQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp --------------------------EEE--------------------------------CCC---CCCCCEEEEEECS
T ss_pred --------------------------EEe--------------------------------ccccccccCCccceEEECC
Confidence 000 00024 67789999999
Q ss_pred CCCEEEEEe-C---CeEEEEECCCceeEEEEeC-------------CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 844 NDSYVMSAG-G---GKVSLFNMMNFKVMTTFMS-------------PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 844 dg~~la~~~-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
++++|++++ + +.|++||+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence 999999998 7 8999999999999999998 899999999999 899999999999999999999
Q ss_pred ceeEEeec------cc---------------ccCeeEEEEccCC----------CEEEEEeCCCcEEEEEcCCC
Q 001178 907 DEVKTKLK------GH---------------QKHITGLAFSTNL----------NILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 907 ~~~~~~~~------~h---------------~~~V~~l~~s~dg----------~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
++.+..+. +| ...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 323 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999999 88 9999999999998 79999999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=307.43 Aligned_cols=317 Identities=16% Similarity=0.259 Sum_probs=244.9
Q ss_pred ecCCccCeEEEeeccc--CCccEEEEEecCCeEEEEeCCCCceeEEecC-----CCceEEEEEEccC----CCEEEEEee
Q 001178 493 FEGHEAPVYSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-----PGLWCTTMLYSAD----GSRLFSCGT 561 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~s~~----g~~l~~~~~ 561 (1131)
..+|..+|.+++|+|. .....+++++.++.|++||+.+.+....+.. +...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4489999999999874 2235677777788999999997776554432 4567999999999 678999886
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeEEEEEec-cCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNMLTSTEA-EGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~v~ 639 (1131)
++.|++||+.+++.+..+.+|.. .|.+++|+| ++.+|++++.||.|++||+.+++.+..+.. ..+...|.+++
T Consensus 94 ----dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 ----RGIIRIINPITMQCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp ----TCEEEEECTTTCCEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred ----CCEEEEEEchhceEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 89999999999999999988765 899999999 899999999999999999999998888732 23445899999
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
|+|++.++++++.||.|++||+.++ .....+.... .++|+
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~-------------------~~~~~-------------------- 208 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSK-RMMNAIKESY-------------------DYNPN-------------------- 208 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSH-HHHHHHHHHH-------------------TCCGG--------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCC-ccccccceeE-------------------EecCC--------------------
Confidence 9999999999999999999999876 3443333210 23333
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
+..+...........+.
T Consensus 209 -----------------------------------------------------------~~~~~~~~~~~~~~~~~---- 225 (366)
T 3k26_A 209 -----------------------------------------------------------KTNRPFISQKIHFPDFS---- 225 (366)
T ss_dssp -----------------------------------------------------------GCSSCCCCEEECCCSEE----
T ss_pred -----------------------------------------------------------CCcccccceeeccCccc----
Confidence 00000000000000000
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCce-------------
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFK------------- 865 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~------------- 865 (1131)
....|...|.+++|+ ++++++++ |+.|++||+.++.
T Consensus 226 ----------------------------~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 226 ----------------------------TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp ----------------------------ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ----------------------------cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 001366777788887 56777776 7788888877653
Q ss_pred -eEEEEeCCCCCeeEEEEeCCC--CcEEEEEeCCCcEEEEEeecce----eEEeeccc--ccCeeEEEEccCCCEEEEEe
Q 001178 866 -VMTTFMSPPPASTFLAFHPQD--NNIIAIGMEDSTIQIYNVRVDE----VKTKLKGH--QKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 866 -~~~~~~~~~~~i~~l~~s~~~--~~~la~g~~dg~I~iwd~~~~~----~~~~~~~h--~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.+..+..|...|.+++|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred heeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 3777888999999999999 7 9999999999999999999875 34477777 79999999999999999999
Q ss_pred CCCcEEEEEcCC
Q 001178 937 SDAQLIFWNTDT 948 (1131)
Q Consensus 937 ~Dg~v~lwd~~~ 948 (1131)
.||.|++||+.+
T Consensus 355 ~dg~i~iwd~~~ 366 (366)
T 3k26_A 355 DDASIWRWDRLR 366 (366)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCEEEEEEecC
Confidence 999999999853
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=306.60 Aligned_cols=281 Identities=15% Similarity=0.263 Sum_probs=239.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
..+.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 688886 899999999999876421 2457889999999999999999999
Q ss_pred CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeec
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPH 506 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~ 506 (1131)
.||+|++||+.+++.+. .+.+|...|.+++++ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987554 678999999988875 55 799999999999999 4566778899999999999986
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCce----eEEecCCCceEEEEEEccCCCEE-EEEeecCCCCceEEEEeCCCCeeeE
Q 001178 507 QKENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRL-FSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+ ++.++++++.|+.+++|+...... ......+...|.+++|+|++..+ ++++ +..|+.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CTTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ecCCCEEEEEeCCccccce
Confidence 5 558999999999999999987653 34566788899999999976655 4443 2348999999999999998
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
.+..+. .+.++.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|.+++|+|+|++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 887643 688899999999988865 789999999999999999876644 89999999999999999999999999
Q ss_pred ecCCC
Q 001178 660 ANADG 664 (1131)
Q Consensus 660 ~~~~~ 664 (1131)
++.+.
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98664
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=293.45 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=211.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. .....++.+|.++|++++|+++ ++ +|++|+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 467999999999999999999999999999999997542 1233468899999999999864 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccC----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSAD---- 552 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~---- 552 (1131)
||| .+++ .+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 5553 567788999999999998875578999999999999999987532 3566788889999999997
Q ss_pred ---------CCEEEEEeecCCCCceEEEEeCCCCe----eeEEEecccCCceEEEEEeCCC---CEEEEEEcCCcEEEEE
Q 001178 553 ---------GSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWD 616 (1131)
Q Consensus 553 ---------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd 616 (1131)
+++|++++. |+.|++||+++++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998765 5667777665 89999999985 7999999999999999
Q ss_pred cCCCe---EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+.+.. ....+....+...|.+++|+|++++|++++.|+.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 98743 12223223445579999999999999999999999999975
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=308.99 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=245.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|||
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC----
Confidence 567999999999998 699999999999 7444432 35899999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCcc-----Ce
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA-----PV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~-----~v 500 (1131)
.++++.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|+|||..+ ++..+. |.. .|
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCE
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccE
Confidence 5666666665432211 22 5688999999999999 799999999999999544 667777 765 49
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCce-------eEEe----cCCCceEEEEEEccCCCEEEEEeecCCCCceE
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS-------RVDY----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHL 569 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i 569 (1131)
.+++|+| +|++|++|+.||+|++||+..+.. ...+ .+|..+|.+++|+||| +++++. |+.+
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999954 678999999999999999988752 3444 5567799999999999 666665 8999
Q ss_pred EEEeCCCCee---eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE--cCCC
Q 001178 570 VEWNESEGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF--NKEG 644 (1131)
Q Consensus 570 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~--sp~~ 644 (1131)
++||+.++.. .+++..++...|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++| +|++
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 9999988774 356643344589999999 58898887 69999999998877444433 4558999999 9999
Q ss_pred CEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcc
Q 001178 645 NLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSA 724 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~ 724 (1131)
..+++++.+|+ ++|....- +++|+
T Consensus 280 ~~La~a~edG~-klw~~d~~------------------------------~~spd------------------------- 303 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLEDEL------------------------------HVTAD------------------------- 303 (588)
T ss_dssp EEEEECSSCEE-EEEESSSE------------------------------EEECC-------------------------
T ss_pred CEEEEEcCCCC-EEEeeccE------------------------------EECCC-------------------------
Confidence 99999999999 99987510 35555
Q ss_pred ccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee
Q 001178 725 ARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1131)
Q Consensus 725 ~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1131)
+..+++ .|+++++|+....... . -.+...|.+++|+|||..+++++.
T Consensus 304 ----~~l~a~--~d~~v~lW~~~g~~l~---------~-~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 304 ----NIIAPY--LEKKFKKWSTIWNEFN---------N-YETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ----CSSHHH--HHHHHHHTTTTTTSSS---------S-SCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ----ceEEEE--cCCEEEEEECCCCcee---------e-eccceEEEEEEECCCCCEEEEEEe
Confidence 222333 3789999987542210 0 124567899999999999988775
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=304.17 Aligned_cols=324 Identities=13% Similarity=0.098 Sum_probs=243.3
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1131)
..|...|.+++|+|++++|++++. ++.|++||..+++ .+..+.+|.. .+.+++|+|++++|++++.||.|++|
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeC----CCEEEEEeCCCCcEEeeeeecCCCC-cccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 457788999999999999999976 8999999999887 7888887665 89999999999999999999999999
Q ss_pred EcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceec
Q 001178 616 DMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTT 695 (1131)
Q Consensus 616 d~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1131)
|+.+++.........+...|.+++|+|+++++++++.|+.|++|++..+... .
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~-~-------------------------- 132 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-W-------------------------- 132 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-E--------------------------
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc-e--------------------------
Confidence 9999887766655556668999999999999999999999999998654100 0
Q ss_pred ccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEe
Q 001178 696 ITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLY 775 (1131)
Q Consensus 696 ~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 775 (1131)
. ...
T Consensus 133 --------------------------------------------------~--------~~~------------------ 136 (372)
T 1k8k_C 133 --------------------------------------------------V--------CKH------------------ 136 (372)
T ss_dssp --------------------------------------------------E--------EEE------------------
T ss_pred --------------------------------------------------e--------eee------------------
Confidence 0 000
Q ss_pred ecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CC
Q 001178 776 TNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GG 854 (1131)
Q Consensus 776 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg 854 (1131)
+...|...|.+++|+|++++|++++ ||
T Consensus 137 ----------------------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 137 ----------------------------------------------------IKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp ----------------------------------------------------ECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ----------------------------------------------------eecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 0002344555555555555555555 55
Q ss_pred eEEEEE------------------CCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc
Q 001178 855 KVSLFN------------------MMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1131)
Q Consensus 855 ~i~vwd------------------~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h 916 (1131)
.|++|| ...++.+..+..|...|.+++|+| ++.+|++++.||.|++||+.+++++..+..|
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 555555 346778888888999999999999 8899999999999999999999999999999
Q ss_pred ccCeeEEEEccCCCEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEE---
Q 001178 917 QKHITGLAFSTNLNILVSSGSDAQLIFWNTDT--WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIY--- 991 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vw--- 991 (1131)
..+|++++|+|++.+|+++ .|+.|++|++.. ++-.. ........ . -..+....+++|
T Consensus 244 ~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~---~~~~~~~~----~----------~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF---GGRLDVPK----Q----------SSQRGLTARERFQNL 305 (372)
T ss_dssp SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE---CCCCCCC----------------------CHHHHHHHC
T ss_pred CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE---eeccCccc----c----------chhhhcchhhhhhhc
Confidence 9999999999999988887 899999999987 43111 11110000 0 011112334444
Q ss_pred eCCCcccc------eeeecCCCCCCCeEEEEEc-cCC---CEEEEEecCCcEEEEECCCCce
Q 001178 992 DGSKMECI------RQWVPQDVLSSPISSAAYS-CNS---QLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 992 d~~~~~~~------~~~~~~~~~~~~v~~i~~s-~dg---~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
+.. +... ..+. .+|...|++++|. ++| ++|++|+.||.|++|++.+++.
T Consensus 306 ~~~-~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 306 DKK-ASSEGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCC-C---------CCCS--SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccc-cccccCcccccccc--ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 322 2221 2221 2458899999966 677 9999999999999999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=328.73 Aligned_cols=248 Identities=22% Similarity=0.294 Sum_probs=214.4
Q ss_pred eccCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEecCCCcc--ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDG-NFIGVAFTKHLIHLYTYQGSNDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i 480 (1131)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 578999999999999875 79999999999999999865432 22346789999999999999999 89999999999
Q ss_pred EEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe---cCCCceEEEEEEccCC--C
Q 001178 481 RVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY---DAPGLWCTTMLYSADG--S 554 (1131)
Q Consensus 481 ~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g--~ 554 (1131)
+||| .++..+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 78888999999999999999965 5579999999999999998654333222 3567789999999987 5
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 634 (1131)
.+++++. ++.|++||+++++....+.+|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888886 89999999999999999988766 8999999999999999999999999999999988776543 36
Q ss_pred cceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 635 LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
|.+++|+|++.++++++ ++.|++||+.++
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 89999999998887765 556999999876
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=290.56 Aligned_cols=249 Identities=14% Similarity=0.226 Sum_probs=205.8
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++.... ...+.+|.+.|.+++|+|+ |+
T Consensus 7 ~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~-----------------~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp SCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCC-----------------CEEECCCSSCEEEEEECCGGGCS
T ss_pred CCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEE-----------------EEEEccccCCeEEEEecCCCcCC
Confidence 5999999999999998 59999999999999997542111 1157799999999999874 89
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCc--eeEEecCCc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGR--KLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~--~~~~~~~h~ 497 (1131)
+||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.+|.
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~ 145 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred EEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence 999999999999999988742 223357789999999999998 67 899999999999999 4432 245678999
Q ss_pred cCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccCC---CEEEEE
Q 001178 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSADG---SRLFSC 559 (1131)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g---~~l~~~ 559 (1131)
..|.+++|+|.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++ .+|+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 999999998752 35799999999999999998765 445678899999999999995 889999
Q ss_pred eecCCCCceEEEEeCCCCe--eeE-EE--ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 560 GTSKEGDSHLVEWNESEGA--LKR-TY--IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~--~~~-~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+. |+.|++||..++. ... .+ ..+ ...+.+++|+|++++|++++.||.|++|+...
T Consensus 226 s~----D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ET----TSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EC----CCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 86 9999999987643 222 22 233 34799999999999999999999999999763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=299.58 Aligned_cols=202 Identities=10% Similarity=0.097 Sum_probs=167.8
Q ss_pred CCCCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 832 AEDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
+...+.+++|||||+++++++ |++|+|||+.+++++..+. |...|.+++|+| ++++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999987654 6899999999999999886 677899999999 89999998854 56777777766
Q ss_pred eEE--eecccccCeeEEEEccCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSDA----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 909 ~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~Dg----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++.............. .+...|.+++|+|||++||+
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEE
Confidence 543 4567999999999999999999999887 688899877654322222222 22368999999999999998
Q ss_pred Ee-CCeEEEEeCCCcccceee-ecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 983 NH-ETQLAIYDGSKMECIRQW-VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 983 ~~-d~~i~vwd~~~~~~~~~~-~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
++ |+.|+|||+.+++++..+ .+| ..+|++++|||||++||+|+.|++|+|||++..
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH---~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAH---SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSS---SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EcCCCEEEEEECCCCcEEEEecCcc---cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 65 899999999999988875 345 889999999999999999999999999999643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=287.43 Aligned_cols=281 Identities=15% Similarity=0.272 Sum_probs=234.3
Q ss_pred EEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC
Q 001178 350 VVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT 429 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~ 429 (1131)
.++|+||+++ +||+|. |++|+|||+.+|+.+... .+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~-----------------~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999987 688875 999999999999876421 24588899999999999999999999
Q ss_pred CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeecc
Q 001178 430 KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQ 507 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~ 507 (1131)
||+|++||+++++.+. .+.+|...+.++.+. +. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987554 678999888776654 55 799999999999999 44566788899999999999864
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCce----eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 508 KENIHFIFSTAVDGKIKAWLYDNVGS----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.++++++.||.|++||+++++. ......+...|.++.++|++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 557999999999999999987653 2345567778999999998776654332 234789999999988877665
Q ss_pred ecccCCceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.. ...+..+.|+++++.+++++ .|+.|++||+.+++++..+..|.. .|++++|+|++++|++++.||+|+|||+
T Consensus 238 ~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp EC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred cc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 53 33688999999999888765 799999999999999999876644 8999999999999999999999999998
Q ss_pred CCC
Q 001178 662 ADG 664 (1131)
Q Consensus 662 ~~~ 664 (1131)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=311.62 Aligned_cols=300 Identities=12% Similarity=0.201 Sum_probs=232.7
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC------------C
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS------------I 410 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 410 (1131)
.+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++....... ........+.+|. .
T Consensus 24 ~~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 24 DVAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CCCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccC
Confidence 356789999999999998 699999999999999998763210000 0000112467888 8
Q ss_pred CEEEEEEcCCC--CEEEEEeCCCeEEEEEecCCCccc------------------------------------eeee-ee
Q 001178 411 SVSRVAWSPDG--NFIGVAFTKHLIHLYTYQGSNDLC------------------------------------QSLE-ID 451 (1131)
Q Consensus 411 ~V~~~~~spdg--~~las~~~d~~i~vwd~~~~~~~~------------------------------------~~~~-~~ 451 (1131)
.|.+++|+|++ .+|++++.|++|++||+.++.... .... ..
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 89999999998 799999999999999998743210 0011 36
Q ss_pred cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC--CceeE-------EecCCccCeEEEeecccCCccEEEEEecCCe
Q 001178 452 AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS--GRKLF-------QFEGHEAPVYSVCPHQKENIHFIFSTAVDGK 522 (1131)
Q Consensus 452 ~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~--~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 522 (1131)
+|...|.+++|+|+++ +|++| .|+.|++||.. ++.+. .+.+|...|.+++|+|.. ..+|++++.||.
T Consensus 175 ~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCCe
Confidence 7999999999999999 78888 79999999943 44444 366899999999997542 179999999999
Q ss_pred EEEEeCCCCce----eEEecCCCc------------eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEec
Q 001178 523 IKAWLYDNVGS----RVDYDAPGL------------WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYIG 585 (1131)
Q Consensus 523 i~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~ 585 (1131)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+++ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 567777765 899999999999999886 48999999997 888888887
Q ss_pred ccCCc--------------eEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----------------------
Q 001178 586 FRKKS--------------AGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE---------------------- 629 (1131)
Q Consensus 586 ~~~~~--------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 629 (1131)
|.... +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 64310 223899999999999999999999999998876422111
Q ss_pred --------CCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 630 --------GGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 630 --------~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.....|..++|+|++++|++++.++ +.+|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1223678899999999999998775 777764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=310.92 Aligned_cols=224 Identities=9% Similarity=0.041 Sum_probs=180.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.-...|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~ 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC
Confidence 4467899999999999999999999999 755544 346899999999999998 37777777755
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc-----eEEEEEEccCCCEEEEEee
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL-----WCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~ 561 (1131)
+..+..+ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|+|||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 5454444 4588999999965 668999999999999999544 333444 444 4999999999999999987
Q ss_pred cCCCCceEEEEeCCCCee-------eEEE----ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE---EEEEe
Q 001178 562 SKEGDSHLVEWNESEGAL-------KRTY----IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM---LTSTE 627 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~-------~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~ 627 (1131)
||+|++||+.++.. +.++ .+| ...|.+++|+|+| +++++.|++|++||+.++.. ...+.
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 99999999998753 5666 443 3589999999998 88999999999999988773 24443
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
. .+...|.+++|+ |..+++++ ++.|++|++.++
T Consensus 223 ~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 223 N-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp C-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred c-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 2 233479999999 68898887 699999998765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=301.63 Aligned_cols=300 Identities=16% Similarity=0.172 Sum_probs=239.3
Q ss_pred cCCCcEEEEEEec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCC
Q 001178 345 HQGSSVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~ 422 (1131)
.|.+.|++++|+| +++ +||+|+.||.|+|||+.+++.......... .........+|...|.+++|+| ++.
T Consensus 41 ~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred ccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEEEccCCCc
Confidence 4999999999999 998 699999999999999998876543111000 0000112347999999999999 788
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC---CCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d---~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
+|++++.|+.|++||+.+++... . ..+...+.+++|++. +. ++++++.|+.|++|| .+++.+..+.+|..
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTAD---V-FNFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSHILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEE---E-EECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCEEECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCccce---e-ccCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceeeeecCCCC
Confidence 99999999999999999876543 2 237788999999984 44 799999999999999 78888999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEe---------------cCCCceEEEEEEccCCCEEEEEeec
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDY---------------DAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~---------------~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.|.+++|++... .++++++.||.|++||++..... ..+ ..+...|.+++|+|++++|++++.
T Consensus 188 ~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 265 (408)
T 4a11_B 188 EILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT- 265 (408)
T ss_dssp CEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-
T ss_pred cEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-
Confidence 999999976432 36899999999999999876532 222 456778999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccC----CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRK----KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++.|++||+.+++....+..+.. ..+........+..+++++.++.|++||+.+++.+..+..+.. .|.++
T Consensus 266 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~v~~~ 340 (408)
T 4a11_B 266 ---DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK--TVDCC 340 (408)
T ss_dssp ---TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS--CEEEE
T ss_pred ---CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC--eEEEE
Confidence 89999999998876554432211 1122222334456777888899999999999999998876554 89999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++++|++++.||.|++|++.++
T Consensus 341 ~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 341 VFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp EEETTTTEEEEEETTSCEEEEEECC-
T ss_pred EEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999887
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=306.74 Aligned_cols=245 Identities=13% Similarity=0.157 Sum_probs=194.5
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
+...|.+++|+|+|.+|++++.|+.+++|++..... .... ...+|...|.+++|+|++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~~~--~~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KHAR--TFSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EECC--CBCCCSSCEEEEEECTTT
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EEEE--EEecCCceEEEEEEeCCC
Confidence 557899999999999999999999999999764310 0000 112589999999999999
Q ss_pred CEEEEEe-CCeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce---eEEeecc-cc
Q 001178 846 SYVMSAG-GGKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE---VKTKLKG-HQ 917 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~-h~ 917 (1131)
++|++++ |++|++||+.+++ ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++ ....+.+ |.
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 146 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR 146 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCC
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccC
Confidence 9999999 8999999999877 6777888999999999999 89999999999999999999887 4677777 99
Q ss_pred cCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCCCCCceEEEEcCCCcEEEEE-
Q 001178 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR-------------KSIAIQLPAGKLPVGETRVQFHSDQVRLLVN- 983 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~-------------~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~- 983 (1131)
+.|++++|+|++++|++++.|+.|++||+...+.. ........ .+...+.+++|+|++++|+++
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEE
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEe
Confidence 99999999999999999999999999999643211 11122222 344789999999999999986
Q ss_pred eCCeEEEEeCCCccc----ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 984 HETQLAIYDGSKMEC----IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 984 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.|+.|++||+.+++. +..+..| ...|++++|+|||++|++++.|+.+ +|+..
T Consensus 225 ~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 225 HDSSVTIAYPSAPEQPPRALITVKLS---QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TTTEEC-CEECSTTSCEEECCCEECS---SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCcEEEEECCCCCCcceeeEeecCC---CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 589999999999987 6777666 7899999999999999999865555 67665
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-31 Score=296.83 Aligned_cols=252 Identities=14% Similarity=0.203 Sum_probs=207.1
Q ss_pred eeccCCCCCEEEEEEcCCCCEE-EEEeC---CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC---CCceEEEEEc
Q 001178 403 AIVKDSSISVSRVAWSPDGNFI-GVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP---NKQLCIVTCG 475 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spdg~~l-as~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d---~~~~~l~s~s 475 (1131)
.++.+|...|.+++|+|++..+ ++|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 3567899999999999999655 55655 89999999998764321 23479999999999999 57 799999
Q ss_pred CCCcEEEEe-CCCc-eeEEecCCccCeEEEeecc----cCCccEEEEEecCCeEEEEeCCCCc-eeEEecCCCc----eE
Q 001178 476 DDKLIRVWD-LSGR-KLFQFEGHEAPVYSVCPHQ----KENIHFIFSTAVDGKIKAWLYDNVG-SRVDYDAPGL----WC 544 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~----~v 544 (1131)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+++.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 6666 7889999999999997743 5677899999999999999999876 5556654433 78
Q ss_pred EEEE----EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC---CCCEEEEEEcCCcEEEEEc
Q 001178 545 TTML----YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 545 ~~~~----~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~ 617 (1131)
.++. |+|+++++++++. ++.|++||+++++..... .+ ...+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWET-NI-KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEEE-EC-SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeeec-CC-CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7889999999986 899999999999875543 33 44899999999 8999999999999999999
Q ss_pred CCCeEEEEEe---ccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 618 DNVNMLTSTE---AEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 618 ~~~~~~~~~~---~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8766544332 123445899999999998 8999999999999998765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-30 Score=285.54 Aligned_cols=239 Identities=15% Similarity=0.227 Sum_probs=210.8
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++.. ..+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG---TVVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE---EEEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE---EEeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 57899999999999 99999999999999999999886543 35678999999999999999 89999999999999
Q ss_pred e-CC---CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEcc-CCCEEEE
Q 001178 484 D-LS---GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSA-DGSRLFS 558 (1131)
Q Consensus 484 d-~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~ 558 (1131)
+ .. ++.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++.+.| +++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9 32 3567888999999999998 236899999999999999 5666777888899999999998 9999999
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ++.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .|.++
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~ 231 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCI 231 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eEEEE
Confidence 986 89999999 56777788875666899999999987 99999999999999999999988876554 89999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|+|++ .+++++.||.|++||+.++
T Consensus 232 ~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 232 KLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EEecCC-CEEEEecCCEEEEEECCCC
Confidence 999999 5889999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.8e-30 Score=291.60 Aligned_cols=280 Identities=11% Similarity=0.116 Sum_probs=236.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-E
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-F 423 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~ 423 (1131)
.|.+.|++++|+|+++ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 4999999999999998 58999999999999998876211 0012448999999999999999 9
Q ss_pred EEEEeCCCeEEEEEe-cCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CC---------Ccee
Q 001178 424 IGVAFTKHLIHLYTY-QGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LS---------GRKL 490 (1131)
Q Consensus 424 las~~~d~~i~vwd~-~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~---------~~~~ 490 (1131)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 87653 35778 999999999999 77 899999999999999 55 6666
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-Cce--eEEecCCCceEEEEEEcc-CCCEEEEEeecCCCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGS--RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKEGD 566 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~~ 566 (1131)
..+. |...|.+++|++ + .+++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 6666 889999999964 3 299999999999999988 443 334456677899999999 9999999986 8
Q ss_pred ceEEEEeCCCC------eeeEEEecccC--------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 567 SHLVEWNESEG------ALKRTYIGFRK--------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 567 ~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
+.|++|+.... +....+..|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999877 77788887642 379999999999999999999999999999999988876550 3
Q ss_pred CCcceEEEcCCCCEEEEEECCCc-EEEEe
Q 001178 633 PSLPRLRFNKEGNLLVVTTADQG-IKILA 660 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~~dg~-i~iw~ 660 (1131)
..|.+++ |++++|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 3788888 99999999999998 44333
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-30 Score=299.77 Aligned_cols=272 Identities=23% Similarity=0.330 Sum_probs=235.4
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|...|+|++| +++ ++++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999888 676 59999999999999999887664 46799999999999 88999
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee---EEecCCccCe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL---FQFEGHEAPV 500 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~---~~~~~h~~~v 500 (1131)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987554 6789999999999974 4 799999999999999 555554 6778999999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.++++ ++.++++++.||.|++||+++......+..|...|.++.+ +++++++++. ++.|++||+++++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4479999999999999999999999999999999999998 4789999986 899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe---------EEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN---------MLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
..+.+|.. .+.+++| ++.++++|+.||.|++||+.++. .+..+..|. ..|.+++| ++.++++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCCEEEEEe
Confidence 99998765 8998888 78899999999999999997665 666666554 48999999 678899999
Q ss_pred CCCcEEEEecCCC
Q 001178 652 ADQGIKILANADG 664 (1131)
Q Consensus 652 ~dg~i~iw~~~~~ 664 (1131)
.||.|++||+.+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-31 Score=291.88 Aligned_cols=249 Identities=16% Similarity=0.238 Sum_probs=203.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| +++
T Consensus 11 ~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ---CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGSS
T ss_pred cccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCCC
Confidence 5999999999999998 59999999999999998765321 114679999999999986 489
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCce---eEEecCC
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRK---LFQFEGH 496 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~---~~~~~~h 496 (1131)
+||+|+.|++|++||++++.. .....+.+|...|.+++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+|
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred EEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 999999999999999988642 233467899999999999998 56 799999999999999 44322 3556789
Q ss_pred ccCeEEEeecccC---------------CccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceEEEEEEccCC----C
Q 001178 497 EAPVYSVCPHQKE---------------NIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWCTTMLYSADG----S 554 (1131)
Q Consensus 497 ~~~v~~~~~~~~~---------------~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g----~ 554 (1131)
...|.+++|+|.. ++.+|++++.|+.|++||++.. .....+..|...|.+++|+|++ .
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence 9999999998752 1468999999999999999754 2445677888999999999987 8
Q ss_pred EEEEEeecCCCCceEEEEeCCCC---e-eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEG---A-LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
+|++++. |+.|++|++.+. . ....+..| ...+.+++|+|++++|++++.|+.|++|+...
T Consensus 230 ~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 230 TIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEEET----TCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred eEEEEcC----CCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 8999986 999999998762 1 12334444 44899999999999999999999999999763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=292.54 Aligned_cols=249 Identities=16% Similarity=0.301 Sum_probs=203.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57799999999999999999999999999999999886532 23468899999999999864 66 799999999999
Q ss_pred EEe-CCC--ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccC---
Q 001178 482 VWD-LSG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSAD--- 552 (1131)
Q Consensus 482 iwd-~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 552 (1131)
+|| .++ ..+..+.+|...|.+++|+|..++.+|++++.|+.|++||++.... ...+..|...|.++.|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 555 4667788999999999998876678999999999999999987532 2344567778999999997
Q ss_pred --------------CCEEEEEeecCCCCceEEEEeCCCC---eeeEEEecccCCceEEEEEeCCC----CEEEEEEcCCc
Q 001178 553 --------------GSRLFSCGTSKEGDSHLVEWNESEG---ALKRTYIGFRKKSAGVVQFDTTR----NRILAAGEDNQ 611 (1131)
Q Consensus 553 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~ 611 (1131)
+++|++++. |+.|++||.+.+ +.+..+.+|.. .|.+++|+|++ .+|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888876 899999999755 45666777665 89999999986 78999999999
Q ss_pred EEEEEcCCC---e-EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecC
Q 001178 612 IKFWDMDNV---N-MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 612 i~iwd~~~~---~-~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 11223333 3479999999999999999999999999975
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=298.79 Aligned_cols=295 Identities=14% Similarity=0.193 Sum_probs=240.2
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-CCCEEEEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP-DGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las~ 427 (1131)
....++++|+...++++|+.||.|+|||+........ ....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 4557899999876677789999999999965433210 1114679999999999999 99999999
Q ss_pred eCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe--cCCccCe
Q 001178 428 FTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF--EGHEAPV 500 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~--~~h~~~v 500 (1131)
+.||+|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987421 233468899999999999999843 799999999999999 888888888 8899999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cCCCce-EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLW-CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.+++|++ ++.+|++++.||.|++||+++......+ ..+... +.++.|+|++++++++. +...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE-CTTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec-cCCCCceEEEEcCcccc
Confidence 9999976 5689999999999999999998888777 566654 89999999999998883 11238999999998866
Q ss_pred e-eEEEecccCCceEEEEEeCCCCEEEE-EEcCCcEEEEEcCCCeE-EEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 579 L-KRTYIGFRKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNM-LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 579 ~-~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
. +......+...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 44444334447999999999999875 45799999999998874 555555545558999999999988764 5679
Q ss_pred EEEEecCCC
Q 001178 656 IKILANADG 664 (1131)
Q Consensus 656 i~iw~~~~~ 664 (1131)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999775
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=290.44 Aligned_cols=289 Identities=16% Similarity=0.233 Sum_probs=237.4
Q ss_pred ccceeeec-cCCCcEEEEEEecC---CCcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCC
Q 001178 337 PRAVACTM-HQGSSVVSMDFHPF---HHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS 411 (1131)
Q Consensus 337 ~~~~~~~~-~h~~~V~~~~fspd---g~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 411 (1131)
+...+..+ .|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ ++.+. ..+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCC
Confidence 34455555 49999999999999 46 699999999999999987 43331 146789999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEE--ecCCCceEEEEEcCCCcEEEEe-CCCc
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAF--SYPNKQLCIVTCGDDKLIRVWD-LSGR 488 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~--s~d~~~~~l~s~s~d~~i~iwd-~~~~ 488 (1131)
|.+++|+|++++|++++.||.|++||+.+++.. .+.+|...|.+++| ++++. +|++++.|+.|++|| .+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 999999999999999999999999999987644 35679999999999 88887 899999999999999 7888
Q ss_pred eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccCCCE----EEEEeec
Q 001178 489 KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSR----LFSCGTS 562 (1131)
Q Consensus 489 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~----l~~~~~~ 562 (1131)
.+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .....+.++.+.++... +++++.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI- 236 (368)
T ss_dssp CSEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET-
T ss_pred EEEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC-
Confidence 888888665 566666542 478899999999999998776554332 23345667777666554 888876
Q ss_pred CCCCceEEEEeCCCC---eeeEEEecccCC-----------ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 563 KEGDSHLVEWNESEG---ALKRTYIGFRKK-----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
++.|++|++... ..+..+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 237 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 237 ---EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ---TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred ---CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 999999999887 567777776543 599999999999999999999999999999999888875
Q ss_pred cCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 629 ~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.. .|.+++|+|++++|++++.|+..+.|++
T Consensus 314 ~~~--~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 314 LDQ--PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CSS--CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCC--CceEEEECCCCCeEEEEecccccccccc
Confidence 544 8999999999999999999886555544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=286.42 Aligned_cols=285 Identities=16% Similarity=0.247 Sum_probs=232.1
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
...+..++||+++ +++.+.|++|++||..+ |......-..+|...|++++|+|||+
T Consensus 105 d~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 105 DYYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp CTTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSS
T ss_pred cccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCcEEEEEECCCCC
Confidence 3456679999764 45556699998887654 32222111225788999999999999
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeecccccCeeEEE
Q 001178 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 924 (1131)
+|++|+ ||+|+|||+.+++++..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999999 8999999999999999999999999988875 579999999999999998764 55678899999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE-EE---eCCeEEEEeCCCcccce
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL-VN---HETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~-~~---~d~~i~vwd~~~~~~~~ 1000 (1131)
|+|+++++++++.|+.+++|+..+++.......... .+...|..++|+|++..++ ++ .|+.|++||+.++++..
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 999999999999999999999988664332222221 2337899999999776544 43 38999999999999988
Q ss_pred eeecCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCe
Q 001178 1001 QWVPQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 1001 ~~~~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~ 1078 (1131)
.+..+ ..+.++.|+++++.+++++ .|+.|+|||+.+++.+..+.+| .+.|. +++|+| ++.+
T Consensus 316 ~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH----------~~~V~--~l~~sp-dg~~ 378 (420)
T 4gga_A 316 AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVL--SLTMSP-DGAT 378 (420)
T ss_dssp EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEE--EEEECT-TSSC
T ss_pred eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC----------CCCEE--EEEEcC-CCCE
Confidence 87765 5899999999999988876 7899999999999999888753 33344 788999 6789
Q ss_pred EEEEecCCcEEEEecCCCc
Q 001178 1079 LAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1079 l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
|+||+.|++|+|||+.+.+
T Consensus 379 l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 379 VASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTEEEEECCSCSS
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999997654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=289.44 Aligned_cols=284 Identities=16% Similarity=0.180 Sum_probs=235.9
Q ss_pred CCCCC--EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 407 DSSIS--VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 407 ~h~~~--V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|++++|+|+++ +|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence 55554 44566654 56888889999999999998754321 223889999999999999 899999999999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+++.+..+.+|...|.+++|+ +.++++++.||.|++||++. ......+..|...|.+++|+|++++|++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 237 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN- 237 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC-
Confidence 8889999999999999999983 36999999999999999984 5556678889999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC-EEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN-RILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
++.|++||+++++.+..+..|.. .+.+++|+|++. .+++++ .|+.|++||+.+++.+..+..+. .|.+++
T Consensus 238 ---d~~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~~~~ 310 (401)
T 4aez_A 238 ---DNVVQIWDARSSIPKFTKTNHNA-AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVTSLI 310 (401)
T ss_dssp ---TSCEEEEETTCSSEEEEECCCSS-CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEEEEE
T ss_pred ---CCeEEEccCCCCCccEEecCCcc-eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEE
Confidence 89999999999999988887655 899999999775 555554 69999999999999988886433 699999
Q ss_pred EcCCCCEEEEEE--CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccc
Q 001178 640 FNKEGNLLVVTT--ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTI 717 (1131)
Q Consensus 640 ~sp~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~ 717 (1131)
|+|+++++++++ .||.|++|++.++.. .
T Consensus 311 ~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~------------------------------------------------- 340 (401)
T 4aez_A 311 WSPHSKEIMSTHGFPDNNLSIWSYSSSGL-T------------------------------------------------- 340 (401)
T ss_dssp ECSSSSEEEEEECTTTCEEEEEEEETTEE-E-------------------------------------------------
T ss_pred ECCCCCeEEEEeecCCCcEEEEecCCccc-e-------------------------------------------------
Confidence 999999999954 899999999865410 0
Q ss_pred ccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeec
Q 001178 718 LNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWN 797 (1131)
Q Consensus 718 l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~ 797 (1131)
.. ..+ ..|...|.+++|+|+|..|++++.||.+++|++.
T Consensus 341 ------------------------~~--------------~~~---~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 341 ------------------------KQ--------------VDI---PAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ------------------------EE--------------EEE---ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ------------------------eE--------------EEe---cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 00 001 1277889999999999999999999999999876
Q ss_pred CC
Q 001178 798 RT 799 (1131)
Q Consensus 798 ~~ 799 (1131)
.+
T Consensus 380 ~~ 381 (401)
T 4aez_A 380 DG 381 (401)
T ss_dssp C-
T ss_pred CC
Confidence 54
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=279.13 Aligned_cols=260 Identities=12% Similarity=0.163 Sum_probs=217.0
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~ 422 (1131)
+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |++
T Consensus 9 gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEYGR 72 (351)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGGCS
T ss_pred ccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCCCC
Confidence 5999999999999998 599999999999999987653211 1124678999999999999 699
Q ss_pred EEEEEeCCCeEEEEEecCCCcc------ceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCCceeEEe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDL------CQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~------~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 493 (1131)
+|++|+.||.|++||+.++... .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .+++.+..+
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccc
Confidence 9999999999999999886421 334567889999999999999 88 899999999999999 666654433
Q ss_pred c-------------CCccCeEEEeeccc-CCccEEEEEecCCeEEEEeCCCCce--eEEecCCCceEEEEEEccCC----
Q 001178 494 E-------------GHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADG---- 553 (1131)
Q Consensus 494 ~-------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g---- 553 (1131)
. +|...+.+++|+|. .++..+++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 2 68889999999875 1357999999999998888777665 45667788899999999998
Q ss_pred CEEEEEeecCCCCceEEEEeCCCC----------------------------------------------eeeEEEeccc
Q 001178 554 SRLFSCGTSKEGDSHLVEWNESEG----------------------------------------------ALKRTYIGFR 587 (1131)
Q Consensus 554 ~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~~~~~ 587 (1131)
++|++++. |+.|++||+.++ +.+..+.+|.
T Consensus 231 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 231 QLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred eEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 78999886 899999998765 5666677765
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
. .|.+++|+|++++|++++.||.|++|++.+++....+.
T Consensus 307 ~-~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 307 G-EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp S-CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred c-cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 5 89999999999999999999999999999876655443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=290.17 Aligned_cols=248 Identities=12% Similarity=0.182 Sum_probs=204.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCc--------cceeeeeecCc------------CCeeEEEEecCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSND--------LCQSLEIDAHV------------GGVNDLAFSYPN 466 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~~~~h~------------~~V~~l~~s~d~ 466 (1131)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987652 11344678998 889999999998
Q ss_pred --CceEEEEEcCCCcEEEEe-CCCcee---------------------------------------EE-ecCCccCeEEE
Q 001178 467 --KQLCIVTCGDDKLIRVWD-LSGRKL---------------------------------------FQ-FEGHEAPVYSV 503 (1131)
Q Consensus 467 --~~~~l~s~s~d~~i~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~~ 503 (1131)
. .|++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 432221 12 36899999999
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEE--------ecCCCceEEEEEEccCC-CEEEEEeecCCCCceEEEEeC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--------YDAPGLWCTTMLYSADG-SRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--------~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
+|++ ++++|+++ .|+.|++||++....... +..|...|.+++|+|++ ++|++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9976 56799998 799999999985444333 45678899999999999 99999986 899999999
Q ss_pred CCCee----eEEEecccC-----------CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCC----
Q 001178 575 SEGAL----KRTYIGFRK-----------KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPS---- 634 (1131)
Q Consensus 575 ~~~~~----~~~~~~~~~-----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 634 (1131)
++++. +..+..+.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 778877654 27999999999999999999 9999999997 777777776642111
Q ss_pred ---------cceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 635 ---------LPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 635 ---------i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999887
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-28 Score=268.73 Aligned_cols=282 Identities=16% Similarity=0.255 Sum_probs=228.1
Q ss_pred eEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 770 i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
...++||+++ +++++.|++|++||+.+ |+.+......+|...|.+++|+|++++|+
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~t----------------------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 4678999886 45556799998887654 32222111225788999999999999999
Q ss_pred EEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc-eeEEeecccccCeeEEEEcc
Q 001178 850 SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQKHITGLAFST 927 (1131)
Q Consensus 850 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~s~ 927 (1131)
+|+ ||+|++||+.+++++..+.+|...+.++.+ ++.++++|+.++.+++|+.... ..+..+.+|...+..+.+++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 999 899999999999999999999988877666 4579999999999999998865 55677899999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE---E-eCCeEEEEeCCCcccceeee
Q 001178 928 NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV---N-HETQLAIYDGSKMECIRQWV 1003 (1131)
Q Consensus 928 dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~---~-~d~~i~vwd~~~~~~~~~~~ 1003 (1131)
++++|++++.|++|++||+.+++.......... .+...+..++++|++..++. + .++.|++|+...........
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~ 238 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 238 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc
Confidence 999999999999999999998764333322222 22367899999998775543 2 37899999999887766544
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEe--cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATF--TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
. ...+..++|+++++.+++++ .|+.|++||+.+++.+..+.+| .+.|. +++|+| ++.+|+|
T Consensus 239 ~----~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH----------~~~V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 239 A----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH----------TSRVL--SLTMSP-DGATVAS 301 (318)
T ss_dssp C----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC----------SSCEE--EEEECT-TSSCEEE
T ss_pred c----eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC----------CCCEE--EEEEcC-CCCEEEE
Confidence 3 56899999999999888765 7999999999999999888753 34444 688999 6789999
Q ss_pred EecCCcEEEEecCCCc
Q 001178 1082 GLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~~~~~ 1097 (1131)
||.||+|+|||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999997654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-29 Score=278.74 Aligned_cols=252 Identities=12% Similarity=0.167 Sum_probs=212.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLI 480 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i 480 (1131)
++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 67899999999999999999999999999999999876432 33456789999999999999 577 89999999999
Q ss_pred EEEe-CCC---------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec------------
Q 001178 481 RVWD-LSG---------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD------------ 538 (1131)
Q Consensus 481 ~iwd-~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------------ 538 (1131)
++|| ..+ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 9999 554 557888899999999999876436899999999999999998766443221
Q ss_pred -CCCceEEEEEEccC---CCEEEEEeecCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCC----CEEEEEEc
Q 001178 539 -APGLWCTTMLYSAD---GSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTR----NRILAAGE 608 (1131)
Q Consensus 539 -~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~ 608 (1131)
.+...+.++.|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .|.+++|+|++ ++|++++.
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEET
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEcC
Confidence 45668999999997 899999986 88888888877765 556666554 89999999998 79999999
Q ss_pred CCcEEEEEcCCC----------------------------------------------eEEEEEeccCCCCCcceEEEcC
Q 001178 609 DNQIKFWDMDNV----------------------------------------------NMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 609 dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
||.|++||+..+ +.+..+.. +...|++++|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~ 316 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNL 316 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEECS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcC
Confidence 999999999865 34444443 444899999999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++++|++++.||.|++|++.++
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTT
T ss_pred CCCEEEEecCCCcEEEEecCcC
Confidence 9999999999999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-29 Score=283.40 Aligned_cols=257 Identities=14% Similarity=0.210 Sum_probs=210.9
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
..++ +|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~ 65 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAH 65 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECC
T ss_pred cEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCC
Confidence 3344 4999999999999998 59999999999999997432211 114678999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCC--ceeEE
Q 001178 420 D--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQ 492 (1131)
Q Consensus 420 d--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~ 492 (1131)
+ +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++|| ..+ .....
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEE
Confidence 7 99999999999999999998752 233467789999999999999 88 899999999999999 444 34456
Q ss_pred ecCCccCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCcee----EEecCCCceEEEEEEccC---CC
Q 001178 493 FEGHEAPVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVGSR----VDYDAPGLWCTTMLYSAD---GS 554 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~---g~ 554 (1131)
+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+ ++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 77899999999998742 5689999999999999999876533 466778889999999999 89
Q ss_pred EEEEEeecCCCCceEEEEeCCCCee--eEEEecc--cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGF--RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
+|++++. ++.|++||+.++.. ....... +...+.+++|+|++++|++++.||.|++|++.....
T Consensus 223 ~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 223 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 9999986 89999999988642 1122211 344799999999999999999999999999985443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=278.35 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=211.1
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999987632233456689999999999999872 38899999999999
Q ss_pred eC-CCceeEEecC--CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC---------CceeEEecCCCceEEEEEEcc
Q 001178 484 DL-SGRKLFQFEG--HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN---------VGSRVDYDAPGLWCTTMLYSA 551 (1131)
Q Consensus 484 d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~ 551 (1131)
|. .......+.+ |...|.+++|++ +..+++++.|+.|++||+++ ......+. +...+.+++|+|
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred EeccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 97 8888888999 999999999986 57999999999999999886 55444444 677899999999
Q ss_pred CCCEEEEEeecCCCCceEEEEeCCC-Cee-eEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCC------eE
Q 001178 552 DGSRLFSCGTSKEGDSHLVEWNESE-GAL-KRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNV------NM 622 (1131)
Q Consensus 552 ~g~~l~~~~~~~~~~~~i~iwd~~~-~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~ 622 (1131)
++ +++++. ++.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|++... +.
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 88 777765 88999999987 543 2333333455899999999 9999999999999999999887 66
Q ss_pred EEEEeccCC-------CCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 623 LTSTEAEGG-------LPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~~~~~~~~~-------~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 677766532 337999999999999999999999999998765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=280.56 Aligned_cols=253 Identities=19% Similarity=0.287 Sum_probs=215.5
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|.+++|+|++++||+|+.||.|++||+..+. ......+.+|...|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 578999999999999999999999999999999998533 2334467899999999999987 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEcc-----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1131)
+|| .+++ .+..+.+|...|.+++|++..++.++++++.||.|++||++... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 6665 67788899999999999876446899999999999999998874 3446677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCCe----eeEEEecccCCceEEEEEeCC---CCEEEEEEcCCcEEEEE
Q 001178 552 --------DGSRLFSCGTSKEGDSHLVEWNESEGA----LKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 552 --------~g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1131)
++.++++++. ++.|++||++++. ....+.+|.. .+.+++|+|+ +.+|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8999999987764 4456666554 8999999999 89999999999999999
Q ss_pred cCCCe---EEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVN---MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~---~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.++. .........+...|.+++|+|++++|++++.||.|++|++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99864 3333333345558999999999999999999999999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=283.29 Aligned_cols=233 Identities=20% Similarity=0.311 Sum_probs=206.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
.+|...|.|++| |+++|++|+.||+|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 367778998877 89999999999999999999887543 67899999999999 677 899999999999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee---EEecCCCceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR---VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+++.... ..+..|...|.++.+ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 88999999999999999999852 58999999999999999887765 567788889999999 7889999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.|++||+++++.+..+.+|.. .+.++.+ +++++++|+.||.|++||+.+++.+..+..+.. .|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe-
Confidence 89999999999999999998766 7888888 468999999999999999999999988876544 7899998
Q ss_pred CCCCEEEEEECCCcEEEEecCCC
Q 001178 642 KEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
++.++++|+.||.|++||+.++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHH
T ss_pred -cCCEEEEEeCCCcEEEEECCCC
Confidence 6889999999999999998544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=275.12 Aligned_cols=295 Identities=15% Similarity=0.179 Sum_probs=233.9
Q ss_pred CCCceeEEecCCccCeEEEeecccC-CccEEEEEecCCeEEEEeCCC-Ccee-EEecCCCceEEEEEEccCCCEEEEEee
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDN-VGSR-VDYDAPGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
...+.+..+.+|.+.|.+++|++.. ++.+|++++.||.|++||+++ .... ..+..|...|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 5566778889999999999997642 258999999999999999987 4443 567788999999999999999999986
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEE--eCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF--DTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
++.|++||+.+++.+.. ..| ...+.+++| ++++.+|++++.||.|++||+.+++.+..+..+. .+.++.
T Consensus 107 ----dg~v~iwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~ 177 (368)
T 3mmy_A 107 ----DKTAKMWDLSSNQAIQI-AQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCAD 177 (368)
T ss_dssp ----TSEEEEEETTTTEEEEE-EEC-SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEE
T ss_pred ----CCcEEEEEcCCCCceee-ccc-cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEE
Confidence 89999999999987764 344 448999999 8999999999999999999999999888887654 455555
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCcccccc
Q 001178 640 FNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~ 719 (1131)
+. ...+++++.++.+.+|++..........
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------------------------ 207 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRI------------------------------------------------ 207 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEEC------------------------------------------------
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhc------------------------------------------------
Confidence 55 4578889999999999986541100000
Q ss_pred CCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCC
Q 001178 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRT 799 (1131)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~ 799 (1131)
T Consensus 208 -------------------------------------------------------------------------------- 207 (368)
T 3mmy_A 208 -------------------------------------------------------------------------------- 207 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE----EEEEe-CCeEEEEECCCc---eeEEEEe
Q 001178 800 EQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY----VMSAG-GGKVSLFNMMNF---KVMTTFM 871 (1131)
Q Consensus 800 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~ 871 (1131)
...+...+.++++.++... +++++ +|.|++|++... ..+..+.
T Consensus 208 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~ 258 (368)
T 3mmy_A 208 -----------------------------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK 258 (368)
T ss_dssp -----------------------------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE
T ss_pred -----------------------------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeee
Confidence 0001222233333333322 66666 788888888876 5566677
Q ss_pred CCCC------------CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 872 SPPP------------ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 872 ~~~~------------~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
.|.. .|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|+|++|++++.|+
T Consensus 259 ~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 259 CHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp CSEEC----CCCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred eeecccccccccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 6665 799999999 899999999999999999999999999999999999999999999999999998
Q ss_pred cEEEEEcCC
Q 001178 940 QLIFWNTDT 948 (1131)
Q Consensus 940 ~v~lwd~~~ 948 (1131)
..+.|++-.
T Consensus 338 ~~~~~~~~~ 346 (368)
T 3mmy_A 338 WSKGHEFYN 346 (368)
T ss_dssp STTCGGGCC
T ss_pred ccccccccC
Confidence 666665544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-28 Score=281.01 Aligned_cols=299 Identities=10% Similarity=0.010 Sum_probs=232.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCc---ccccccceeeccccc----------------------------
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRE---RLVSKPFKIWDMSNC---------------------------- 396 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~---------------------------- 396 (1131)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+. .|.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAG-----KWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEE-----EEECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeee-----ecCCccccccccccccchhhccccccccccccccc
Confidence 4789999999998 46655 47899999999998 332 2221100
Q ss_pred ------------ccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEec--CCCccceeeeeecCcCCeeEEE
Q 001178 397 ------------SMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLA 461 (1131)
Q Consensus 397 ------------~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~ 461 (1131)
..........+|.+.|.+++|+|+|++| |+|+.||.|++||+. +++.+... ....|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEE
Confidence 0000111234677789999999999996 899999999999999 77655432 1236778999999
Q ss_pred EecCCCceEEEEEcCCCcEEEEe-CCCceeE----EecCCccCeEEEeeccc-CCccEEEEEecCCeEEEEeCCCCceeE
Q 001178 462 FSYPNKQLCIVTCGDDKLIRVWD-LSGRKLF----QFEGHEAPVYSVCPHQK-ENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1131)
Q Consensus 462 ~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1131)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||++++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 5555443 77889999999999875 226899999999999999999888776
Q ss_pred E-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc------------------------CCc
Q 001178 536 D-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR------------------------KKS 590 (1131)
Q Consensus 536 ~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------------------~~~ 590 (1131)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999986 8999999999999888886431 236
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEEc--CCC---eEEEEEeccCCCCCcceEEEcCCCCEEEEEEC------CCcEEE
Q 001178 591 AGVVQFDTTRNRILAAG-EDNQIKFWDM--DNV---NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA------DQGIKI 658 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~------dg~i~i 658 (1131)
+..++|+|+++++++++ .|+.|++|++ ..+ +.+..+..+ ..+.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 88899999999999999 8999999999 555 666666655 37999999996533333332 455888
Q ss_pred EecCCC
Q 001178 659 LANADG 664 (1131)
Q Consensus 659 w~~~~~ 664 (1131)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 887543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=280.56 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=205.8
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCCc-cceeeeeecCcCCeeEEEEec-CCCceEEEEEcCCCcEEEEe-CC
Q 001178 411 SVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSND-LCQSLEIDAHVGGVNDLAFSY-PNKQLCIVTCGDDKLIRVWD-LS 486 (1131)
Q Consensus 411 ~V~~~~~spdg~~la-s~~~d~~i~vwd~~~~~~-~~~~~~~~~h~~~V~~l~~s~-d~~~~~l~s~s~d~~i~iwd-~~ 486 (1131)
....++++|+...++ +++.||.|+||++..... ......+.+|.+.|++++|+| +++ +|++|+.|+.|+||| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688999876544 578899999999965422 233345789999999999999 787 899999999999999 55
Q ss_pred C-------ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCCCEEE
Q 001178 487 G-------RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 487 ~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~ 557 (1131)
+ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+++++....+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 5 5678899999999999997643 259999999999999999999888888 78889999999999999999
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEE-ecccCCceEEEEEeCCCCEEEEE---EcCCcEEEEEcCCCeE-EEEEeccCCC
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTY-IGFRKKSAGVVQFDTTRNRILAA---GEDNQIKFWDMDNVNM-LTSTEAEGGL 632 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 632 (1131)
+++. ++.|++||+++++.+..+ ..|....+..+.|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9986 899999999999999988 67666558899999999999998 7899999999998764 333322 233
Q ss_pred CCcceEEEcCCCCEEEEEE-CCCcEEEEecCCC
Q 001178 633 PSLPRLRFNKEGNLLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 633 ~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~ 664 (1131)
..+.+++|+|+++++++++ .||.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4789999999999997554 7999999998766
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-28 Score=269.71 Aligned_cols=277 Identities=14% Similarity=0.163 Sum_probs=213.1
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.|.+.|++++|||||+ +||+|+.+| ++|||+.+++.... .+...+..++++++++.+
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 688888665 78999987765431 112247889999998887
Q ss_pred E-EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC-ceeEEecCCccCeE
Q 001178 425 G-VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG-RKLFQFEGHEAPVY 501 (1131)
Q Consensus 425 a-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~-~~~~~~~~h~~~v~ 501 (1131)
+ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CCc
Confidence 4 56778999999999987654 343 67799999999764 3333 378999999 555 56666554 333
Q ss_pred EEeecccCCccEEEE--EecCCeEEEEeCCCCc----------------eeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 502 SVCPHQKENIHFIFS--TAVDGKIKAWLYDNVG----------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444443 34554 6899999999998765 15678889999999999999999999987
Q ss_pred CCCce-EEEEeCCCCeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEE--EE-------------
Q 001178 564 EGDSH-LVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT--ST------------- 626 (1131)
Q Consensus 564 ~~~~~-i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~------------- 626 (1131)
|++ |++||+++++.+..+. +.+...|.+++|+|++++|++++.|++|++||+..+.... .+
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 898 9999999999999998 5345589999999999999999999999999997653111 10
Q ss_pred -----ec-cCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 627 -----EA-EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 627 -----~~-~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 111123477999999999999999999999998665
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=243.08 Aligned_cols=299 Identities=12% Similarity=0.089 Sum_probs=201.8
Q ss_pred CEEEEEEcCCCC---EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC
Q 001178 411 SVSRVAWSPDGN---FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1131)
Q Consensus 411 ~V~~~~~spdg~---~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 487 (1131)
.+.++-|-.-|- .+++++. ..|++|+..++..-+..+++..|..+|..++|.||...++.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN----------- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence 466676755443 5666664 5899999999865567778999999999999999988744444332
Q ss_pred ceeEEecCCccCeEEEeecccC--CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 488 RKLFQFEGHEAPVYSVCPHQKE--NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 488 ~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
-+...|.+++++|++ -++++++++.+ +.+|++ ++|+.+.+++. ..
T Consensus 109 -------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l----------------------~~g~lv~ss~~--g~ 155 (356)
T 2w18_A 109 -------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL----------------------TKRRLVSSSGT--LS 155 (356)
T ss_dssp -------SSEEEEEEECC------CCEEEEEEEEE--EEEEEE----------------------TTTEEEEEESS--ST
T ss_pred -------ccccceEEEEECCCccccccEEEeCCCe--EEEEec----------------------CCCcEEEeccc--CC
Confidence 255678889886531 05788887744 667754 23444444321 12
Q ss_pred CceEEEEeC-CCCeeeEEEecccCCceEEEEEeC---CCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC-CCCCcceEEE
Q 001178 566 DSHLVEWNE-SEGALKRTYIGFRKKSAGVVQFDT---TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRF 640 (1131)
Q Consensus 566 ~~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~v~~ 640 (1131)
++.|++|++ .+|+.+..+.+|.. .+..++|++ ++..|++++.|++|+|||+.+++.+.++..+. +...+.+++|
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 677888887 44777677666555 788889998 77999999999999999999999999887432 2334566677
Q ss_pred cCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccC
Q 001178 641 NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNG 720 (1131)
Q Consensus 641 sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~ 720 (1131)
+|+|.++++++.+.. +|++
T Consensus 235 SpdG~~lvs~s~~~~--~w~l----------------------------------------------------------- 253 (356)
T 2w18_A 235 SEMGLLFIVLSHPCA--KESE----------------------------------------------------------- 253 (356)
T ss_dssp EETTEEEEEEC---------------------------------------------------------------------
T ss_pred CCCCCEEEEeccCCC--ccee-----------------------------------------------------------
Confidence 887777766554322 1221
Q ss_pred CCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCC
Q 001178 721 ADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTE 800 (1131)
Q Consensus 721 ~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~ 800 (1131)
++++.
T Consensus 254 --------------------------------------------------------------aSGs~------------- 258 (356)
T 2w18_A 254 --------------------------------------------------------------SLRSP------------- 258 (356)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred --------------------------------------------------------------eccCC-------------
Confidence 12222
Q ss_pred CCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEE-----eCCCC
Q 001178 801 QNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTF-----MSPPP 875 (1131)
Q Consensus 801 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-----~~~~~ 875 (1131)
|++|++||..+++++..+ .+|..
T Consensus 259 ----------------------------------------------------D~tIklWd~~tgk~l~v~~~~~p~Gh~~ 286 (356)
T 2w18_A 259 ----------------------------------------------------VFQLIVINPKTTLSVGVMLYCLPPGQAG 286 (356)
T ss_dssp ----------------------------------------------------CEEEEEEETTTTEEEEEEEECCCTTCCC
T ss_pred ----------------------------------------------------CcEEEEEECCCCEEEEEEEeeccCCCcc
Confidence 334444444444443332 13333
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEc
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNT 946 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~ 946 (1131)
.+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+|...+. +++|||||++|++|+.|++|+|||+
T Consensus 287 ~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 287 RFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 3333333 467899999999999999999999999999988765 6899999999999999999999986
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-27 Score=270.95 Aligned_cols=304 Identities=10% Similarity=0.077 Sum_probs=242.9
Q ss_pred cccccCCC--cccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec
Q 001178 328 QATWSLDD--LPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1131)
Q Consensus 328 ~~~~~~~~--~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1131)
..+|..+. ........+.....+.+++|+|++ .++++++.++.|++||+.+++...... ...+
T Consensus 101 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~ 165 (433)
T 3bws_A 101 EKLIALDKEGITHRFISRFKTGFQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKY 165 (433)
T ss_dssp TCEEECCBTTCSEEEEEEEECSSCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECC--------------CHHH
T ss_pred eEEEEECCCCCcceEEEEEcCCCCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecC--------------cccc
Confidence 34444444 233555666666778899999955 478888889999999999987664211 1135
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD- 484 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd- 484 (1131)
.+|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++||
T Consensus 166 ~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 166 KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDR 241 (433)
T ss_dssp HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEEC
Confidence 6899999999999999999999999999999999876543 56688999999999999984 446777899999999
Q ss_pred CCCceeEEecCCccCeEEEeecccCCccEEEEEe--------cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEE
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA--------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
.+++.+..+..+ ..+.+++|++ +++.+++++ .||.|++||+.+++..... .+...+.+++|+|+++.+
T Consensus 242 ~~~~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 242 KTKLEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKI 317 (433)
T ss_dssp TTTEEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEE
T ss_pred CCCcEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEE
Confidence 777777777654 4588898865 557888887 4899999999887665544 334468899999999877
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEc---------------CCcEEEEEcCCCe
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGE---------------DNQIKFWDMDNVN 621 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~ 621 (1131)
++++. .++.|++||..+++.+..+.. ...+..++|+|+++++++++. ||.|++||+.+++
T Consensus 318 ~~~~~---~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDM---CCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEET---TTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEec---CCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 65532 388999999999998887763 347889999999999988876 5799999999999
Q ss_pred EEEEEeccCCCCCcceEEEcCCCCEEEEEEC-CCcEEEEecC
Q 001178 622 MLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1131)
Q Consensus 622 ~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 662 (1131)
.+..+..+. .+.+++|+|+|+++++++. |+.|++|++.
T Consensus 393 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 393 VKEFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 888887533 6899999999999998875 9999999975
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=276.87 Aligned_cols=265 Identities=15% Similarity=0.240 Sum_probs=212.8
Q ss_pred eeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 340 ~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
....+.|.+.|++++|+|++..+||+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 34566799999999999985458999999999999999763111000 000001124679999999999999
Q ss_pred CCC-EEEEEeCCCeEEEEEecCCCcc----ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCC---cee
Q 001178 420 DGN-FIGVAFTKHLIHLYTYQGSNDL----CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSG---RKL 490 (1131)
Q Consensus 420 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~---~~~ 490 (1131)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999874321 223456789999999999995444 899999999999999 444 567
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeEEecCCCceEEEEEEccCCC-EEEEEeecCCCCce
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGS-RLFSCGTSKEGDSH 568 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~~ 568 (1131)
..+..|...|.+++|++... .++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 78889999999999976432 4799999999999999998 455667888999999999999996 5777765 899
Q ss_pred EEEEeCCC--------------CeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCCC
Q 001178 569 LVEWNESE--------------GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 569 i~iwd~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 620 (1131)
|++||+.. .+.+..+.+|.. .+..++|+|+++ ++++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999976 255566666544 899999999998 8999999999999998753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=302.30 Aligned_cols=251 Identities=14% Similarity=0.200 Sum_probs=209.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC--CC
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD--GN 422 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g~ 422 (1131)
+|.+.|++++|+|+|++ |++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ ++
T Consensus 7 gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSCS
T ss_pred cCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCCC
Confidence 49999999999999984 8999999999999997433211 1147799999999999998 99
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEEEEe-CCC--ceeEEecCCc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIRVWD-LSG--RKLFQFEGHE 497 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~iwd-~~~--~~~~~~~~h~ 497 (1131)
+|++|+.||+|++||+.+++. .....+.+|...|++++|+|+ ++ .+++|+.|+.|++|| ..+ .....+.+|.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHA 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCS
T ss_pred EEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCC
Confidence 999999999999999998752 233467889999999999999 88 899999999999999 444 3455677899
Q ss_pred cCeEEEeecccC-----------CccEEEEEecCCeEEEEeCCCCc----eeEEecCCCceEEEEEEccC---CCEEEEE
Q 001178 498 APVYSVCPHQKE-----------NIHFIFSTAVDGKIKAWLYDNVG----SRVDYDAPGLWCTTMLYSAD---GSRLFSC 559 (1131)
Q Consensus 498 ~~v~~~~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~---g~~l~~~ 559 (1131)
..|.+++|++.. ++..+++|+.||.|++||+++.. ....+..|...|.+++|+|+ +++++++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 999999998742 56899999999999999998763 34466788899999999999 8999999
Q ss_pred eecCCCCceEEEEeCCCCe-----eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 560 GTSKEGDSHLVEWNESEGA-----LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
+. ++.|++||+.++. ....... +...+.+++|+|+++++++++.||.|++|++..+.
T Consensus 226 s~----Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQ----DRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ES----SSCEEEEEESSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ec----CCEEEEecCCCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 86 8999999998864 2222222 34478899999999999999999999999998643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=263.46 Aligned_cols=239 Identities=10% Similarity=0.179 Sum_probs=186.1
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
..+|...|.+++|+|||++||+|+.++ +++||+.+++... ..+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-----SQEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-----EEECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-----eeecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 468999999999999999999998775 7899998765332 122235888999998884 446788899999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 8888888886 677999999854 2 34443 4889999999887 44443333 445566777 67776511
Q ss_pred CCCCceEEEEeCCCCe----------------eeEEEecccCCceEEEEEeCCCCEEEEEEcCCc-EEEEEcCCCeEEEE
Q 001178 563 KEGDSHLVEWNESEGA----------------LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQ-IKFWDMDNVNMLTS 625 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~ 625 (1131)
..++.|++||+.++. .+..+.+|.. .|.+++|+|++.+|++++.|++ |++||+.+++.+..
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 238899999999865 2677887765 8999999999999999999998 99999999999988
Q ss_pred EeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 626 TEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 626 ~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+....+...|.+++|+|++++|++++.|+.|++||+..+
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 873223448999999999999999999999999999765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=243.94 Aligned_cols=219 Identities=17% Similarity=0.135 Sum_probs=166.1
Q ss_pred CccceEEEEeecC----CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEe
Q 001178 766 SASKVARLLYTNS----GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1131)
Q Consensus 766 ~~~~i~~l~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1131)
+...|..++++|+ +..++.++.+ +++|++
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l--------------------------------------------- 142 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL--------------------------------------------- 142 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence 4466788999999 8888887754 444531
Q ss_pred cCCCCEEEEEe---CCeEEEEEC-CCceeEEEEeCCCCCeeEEEEeC--CCCcEEEEEeCCCcEEEEEeecceeEEeecc
Q 001178 842 SKNDSYVMSAG---GGKVSLFNM-MNFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 842 s~dg~~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~ 915 (1131)
++|+.+.++. |+.|++|++ .+++.+..+..|...++.++|++ +++.+||+|+.|++|+|||+.+++++.++.+
T Consensus 143 -~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 143 -TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp -TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 4566666654 788999998 55888888888888888888887 4679999999999999999999999999987
Q ss_pred ccc---CeeEEEEccCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 916 HQK---HITGLAFSTNLNIL------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 916 h~~---~V~~l~~s~dg~~l------------~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
|.. .+.+++|+|||.++ ++|+.|++|++||..+++.........+.++. ..+. ..+.++.++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~l--sg~~sg~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFL--EGDVKDHCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEE--EEEEETTEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeE--ccccCCCEE
Confidence 543 67788999999876 56888999999999998766544433344433 2233 333347778
Q ss_pred EEEe-CCeEEEEeCCCcccceeeecCCCCCCC-eEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 981 LVNH-ETQLAIYDGSKMECIRQWVPQDVLSSP-ISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 981 ~~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~-v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
++++ |+.|+|||+.+++++..+.+| ... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH---~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPV---SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCC---CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 8865 999999999999999998876 444 446899999999999999999999995
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=263.87 Aligned_cols=279 Identities=10% Similarity=0.070 Sum_probs=217.1
Q ss_pred EEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC
Q 001178 461 AFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1131)
Q Consensus 461 ~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1131)
.+.+++. ++++|+.|++|++|| .+++.+..+. ...|.++.+++. +++++.|++|++|+.+.
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4445676 899999999999999 8888887776 567777877654 99999999999998642
Q ss_pred CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCCcEEEEEc
Q 001178 540 PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 540 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~ 617 (1131)
.+.+|+..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 4677888888877777644455899999999 9999999999999999999
Q ss_pred CCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccc
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTIT 697 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 697 (1131)
.+++.+.....+. ...+.+++|+|++.++++|+.||.|++||+.++......
T Consensus 157 ~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------------- 208 (343)
T 3lrv_A 157 EDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSR--------------------------- 208 (343)
T ss_dssp SSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEE---------------------------
T ss_pred CCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccE---------------------------
Confidence 9998866654332 236999999999999999999999999998765100000
Q ss_pred ccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeec
Q 001178 698 PVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1131)
Q Consensus 698 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1131)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 3lrv_A 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEE
Q 001178 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVS 857 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~ 857 (1131)
+...|...|.+++|+|+|.+|+++++++|+
T Consensus 209 --------------------------------------------------~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~ 238 (343)
T 3lrv_A 209 --------------------------------------------------FPVDEEAKIKEVKFADNGYWMVVECDQTVV 238 (343)
T ss_dssp --------------------------------------------------CCCCTTSCEEEEEECTTSSEEEEEESSBEE
T ss_pred --------------------------------------------------EeccCCCCEEEEEEeCCCCEEEEEeCCeEE
Confidence 001267888999999999999999977999
Q ss_pred EEECCCceeEEEEeC---CCCCe--eEEEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeecccccCeeEEEEcc---C
Q 001178 858 LFNMMNFKVMTTFMS---PPPAS--TFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQKHITGLAFST---N 928 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~---~~~~i--~~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~---d 928 (1131)
+||+.+++.+..+.. |...+ .+++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +
T Consensus 239 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~ 313 (343)
T 3lrv_A 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTAD 313 (343)
T ss_dssp EEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CC
T ss_pred EEEcCCCCcceeecccccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccc
Confidence 999988876655443 33334 3699999 8999999998 999999999765433222 5688899998 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 001178 929 LNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 929 g~~l~s~~~Dg~v~lwd~~~ 948 (1131)
...+++++.|+.+.++-...
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp CCEEEEEEETTEEEEEEECS
T ss_pred cceeEEEecCCceEEEEecC
Confidence 89999999999999886544
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-26 Score=260.56 Aligned_cols=274 Identities=10% Similarity=0.074 Sum_probs=220.2
Q ss_pred cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEec
Q 001178 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQ 439 (1131)
Q Consensus 361 ~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~ 439 (1131)
+++++++.|+.|++||+.+++.+. .+.+|. .+.+++|+|+|++| ++++.|++|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~-------------------~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA-------------------TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE-------------------EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE-------------------EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 578999999999999999987664 234454 58999999999987 667789999999999
Q ss_pred CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEE
Q 001178 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FST 517 (1131)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~ 517 (1131)
+++.+. .+..|. .+.+++|+|+++. ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ +++
T Consensus 63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~ 134 (391)
T 1l0q_A 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (391)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence 887543 344444 8999999999994 446777889999999 677777776644 5688999865 44655 788
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEe
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1131)
+.|+.|++||+.+++....+..+ ..+..++|+|+++++++++. .++.|++||+.+++.+..+.. ...+.+++|+
T Consensus 135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~ 208 (391)
T 1l0q_A 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKV--EAAPSGIAVN 208 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEEC--SSEEEEEEEC
T ss_pred CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEec--CCCccceEEC
Confidence 88999999999988877776655 45699999999998865432 278999999999988877764 2368889999
Q ss_pred CCCCEEEEEE---cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE-EEEECCCcEEEEecCCCchhhhhhh
Q 001178 598 TTRNRILAAG---EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 598 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.++ +....+.
T Consensus 209 ~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~ 283 (391)
T 1l0q_A 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMA 283 (391)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEE
Confidence 9999999888 68999999999999888887654 47899999999987 56678999999999887 3443333
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=267.38 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=210.3
Q ss_pred eccCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEecCC-------CccceeeeeecCcCCeeEEEEecCCCceEEEEEc
Q 001178 404 IVKDSSISVSRVAWSPD-GNFIGVAFTKHLIHLYTYQGS-------NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
...+|.+.|++++|+|+ +.+||+++.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999862 112344568899999999999999886 699999
Q ss_pred CCCcEEEEe-CCCce-------eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCC---ceeEEecCCCceE
Q 001178 476 DDKLIRVWD-LSGRK-------LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNV---GSRVDYDAPGLWC 544 (1131)
Q Consensus 476 ~d~~i~iwd-~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v 544 (1131)
.||.|++|| ..+.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999 44221 4567789999999999873 3479999999999999999987 4566777888999
Q ss_pred EEEEEccCCC-EEEEEeecCCCCceEEEEeCCC-CeeeEEEecccCCceEEEEEeCCCC-EEEEEEcCCcEEEEEcCC--
Q 001178 545 TTMLYSADGS-RLFSCGTSKEGDSHLVEWNESE-GALKRTYIGFRKKSAGVVQFDTTRN-RILAAGEDNQIKFWDMDN-- 619 (1131)
Q Consensus 545 ~~~~~s~~g~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~-- 619 (1131)
++++|+|++. .+++++. ++.|++||+++ +..+..+..|.. .+.+++|+|+++ +|++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 9999999998 5777775 89999999998 567788887655 899999999985 689999999999999987
Q ss_pred ------------CeEEEEEeccCCCCCcceEEEcCCCC-EEEEEECCCcEEEEecCCC
Q 001178 620 ------------VNMLTSTEAEGGLPSLPRLRFNKEGN-LLVVTTADQGIKILANADG 664 (1131)
Q Consensus 620 ------------~~~~~~~~~~~~~~~i~~v~~sp~~~-~l~~~~~dg~i~iw~~~~~ 664 (1131)
.+.+..... +...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 356 EEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 244444443 344799999999999 9999999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=259.32 Aligned_cols=354 Identities=13% Similarity=0.101 Sum_probs=259.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEecCCCccceeeeeecCcCCeeEEE---EecCCCceEEE-----------
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA---FSYPNKQLCIV----------- 472 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~---~s~d~~~~~l~----------- 472 (1131)
....|..+.++|....++..... ...+++.. .....+..++ |+|++..++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 34567778888865444433211 11222221 1223455666 66666532222
Q ss_pred -EEcCCC--cEEEEeC-CC--ceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-----EecCCC
Q 001178 473 -TCGDDK--LIRVWDL-SG--RKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-----DYDAPG 541 (1131)
Q Consensus 473 -s~s~d~--~i~iwd~-~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-----~~~~~~ 541 (1131)
+++.++ .|..||. ++ +.+..+..+ ..+.+++|++ ++.++++++.|+.|++||+.+++... .+..|.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 233344 4455553 33 445555544 4456888876 56788888899999999999887765 334677
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCC
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNV 620 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 620 (1131)
..+.+++|+++++++++++. ++.|++||..+++.+..+..+.. .+.+++|+|+++++++++ .|+.|++||+.++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTGK-WSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSSS-SEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCCC-CeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 78999999999999999876 89999999999999888886544 799999999999886555 7999999999999
Q ss_pred eEEEEEeccCCCCCcceEEEcCCCCEEEEEE--------CCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT--------ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 621 ~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+.+..+..+. .+.+++|+|+++.+++++ .|+.|++||+.++.. .
T Consensus 245 ~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-~------------------------ 296 (433)
T 3bws_A 245 LEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-I------------------------ 296 (433)
T ss_dssp EEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-E------------------------
T ss_pred cEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-E------------------------
Confidence 8887776543 589999999999999887 477788887654300 0
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
T Consensus 297 -------------------------------------------------------------------------------- 296 (433)
T 3bws_A 297 -------------------------------------------------------------------------------- 296 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE-
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA- 851 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~- 851 (1131)
... .+...+.+++|+|+++.++++
T Consensus 297 ----------~~~---------------------------------------------~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 297 ----------DTI---------------------------------------------GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp ----------EEE---------------------------------------------EEEECEEEEEECSSTTEEEEEE
T ss_pred ----------eec---------------------------------------------cCCCCcceEEECCCCCEEEEEe
Confidence 000 012245678899999866544
Q ss_pred e-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC---------------CCcEEEEEeecceeEEeecc
Q 001178 852 G-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME---------------DSTIQIYNVRVDEVKTKLKG 915 (1131)
Q Consensus 852 ~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---------------dg~I~iwd~~~~~~~~~~~~ 915 (1131)
+ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 4 7999999999999888876 567799999999 8888887776 57999999999998888876
Q ss_pred cccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCC
Q 001178 916 HQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDT 948 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~ 948 (1131)
+ ..+.+++|+|||++|++++. |+.|++|+++.
T Consensus 400 ~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 G-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp S-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 4 57999999999999988875 99999999874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=292.70 Aligned_cols=253 Identities=19% Similarity=0.281 Sum_probs=212.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecC--CCceEEEEEcCCCcEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYP--NKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~~~l~s~s~d~~i~ 481 (1131)
++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.++|++++|+++ ++ +|++|+.||.|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 578999999999999999999999999999999998543 2334468899999999999998 77 899999999999
Q ss_pred EEe-CCCc--eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEcc-----
Q 001178 482 VWD-LSGR--KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSA----- 551 (1131)
Q Consensus 482 iwd-~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 551 (1131)
+|| .+++ .+..+.+|...|.+++|++..++..+++++.||.|++||++... ....+..+...|.++.|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67788899999999999876446899999999999999998773 3446677888999999999
Q ss_pred --------CCCEEEEEeecCCCCceEEEEeCCCC----eeeEEEecccCCceEEEEEeCC---CCEEEEEEcCCcEEEEE
Q 001178 552 --------DGSRLFSCGTSKEGDSHLVEWNESEG----ALKRTYIGFRKKSAGVVQFDTT---RNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 552 --------~g~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd 616 (1131)
++.++++++. ++.|++||++++ .....+.+|.. .|.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999876 55566777655 8999999999 89999999999999999
Q ss_pred cCCCeEE---EEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 617 MDNVNML---TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 617 ~~~~~~~---~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+.++... .......+...|.+++|+|+++++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 11222334557999999999999999999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=253.82 Aligned_cols=327 Identities=10% Similarity=0.106 Sum_probs=253.3
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEE
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTM 547 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 547 (1131)
++++++.|+.|++|| .+++.+..+..|. .+.+++|++ ++..+ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 7788888887765 488999865 45655 677799999999999888877776555 79999
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 626 (1131)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999877653 26899999999999988887543 67899999999977 67778999999999999988887
Q ss_pred eccCCCCCcceEEEcCCCCEE-EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
..+. .+..++|+|+++.+ ++++.++.|++||+.++.. ..
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~------------------------------------ 194 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-ID------------------------------------ 194 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EE------------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-EE------------------------------------
Confidence 7643 46899999999887 5667789999999765410 00
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEe
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILAL 785 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 785 (1131)
T Consensus 195 -------------------------------------------------------------------------------- 194 (391)
T 1l0q_A 195 -------------------------------------------------------------------------------- 194 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe----CCeEEEEEC
Q 001178 786 WSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG----GGKVSLFNM 861 (1131)
Q Consensus 786 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~----dg~i~vwd~ 861 (1131)
.. .+...+.+++|+|+|+++++++ ++.|++||+
T Consensus 195 -------~~------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 195 -------TV------------------------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp -------EE------------------------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred -------EE------------------------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 00 0223456788899998888775 588999999
Q ss_pred CCceeEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeecceeEEeecccccCee---EEE------------E
Q 001178 862 MNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEVKTKLKGHQKHIT---GLA------------F 925 (1131)
Q Consensus 862 ~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~---~l~------------~ 925 (1131)
.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 232 GTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 9999988888754 588999999 66655 7778999999999999999888877765432 122 2
Q ss_pred ccCC----------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 926 STNL----------NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 926 s~dg----------~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
+.+. ..+...+.|..+++|++..+.... .......|+++|.+.+.
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------------SSSCEECCSSCEEEEEE
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCCCcccC------------cCCCeEEeCCCceEEEE
Confidence 2221 246666778899999998765311 11234679999988774
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=266.35 Aligned_cols=303 Identities=12% Similarity=0.093 Sum_probs=199.8
Q ss_pred CCcEEEEEE---ecCCCcEEEEEcCCCeEEEEECCCCccccc-----ccceeeccccccc-----ceeceeccCCCCCEE
Q 001178 347 GSSVVSMDF---HPFHHTLLVVGCGDGEITLWDVGLRERLVS-----KPFKIWDMSNCSM-----MLQAAIVKDSSISVS 413 (1131)
Q Consensus 347 ~~~V~~~~f---spdg~~llasg~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~ 413 (1131)
.....+++| +|++..++++| .++.|.+|+......... .....|....... .........|...+.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 345566666 46666666666 478899998643322111 0111111111000 001112334555666
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEecCCCccc--eeeeeecCcCCeeEEEEec--------CCCceEEEEEcCCCcEEEE
Q 001178 414 RVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSY--------PNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~~~~h~~~V~~l~~s~--------d~~~~~l~s~s~d~~i~iw 483 (1131)
...+++++.+||+|+.|++|++||+++++... ....+.+|.+.|++++|+| |++ +|+|||.|++|+||
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~W 171 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIW 171 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEE
Confidence 66777788899999999999999999876532 2234789999999999998 777 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------------------------
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------------------------- 537 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------------------------- 537 (1131)
| .++.++..+.+|..+|.+++|+|.. ..+|++++.||+|++||+++.......
T Consensus 172 d~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 250 (393)
T 4gq1_A 172 RLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS 250 (393)
T ss_dssp EEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred ECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence 9 7788888888999999999998743 358999999999999999876543321
Q ss_pred cCCCceEEEEEEc-cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEE------------------EEEeC
Q 001178 538 DAPGLWCTTMLYS-ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGV------------------VQFDT 598 (1131)
Q Consensus 538 ~~~~~~v~~~~~s-~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~s~ 598 (1131)
..+...+.++.|+ ++++.+++++. ++.+++||+..++....+..+.. .+.. ..++|
T Consensus 251 ~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 251 SGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred ccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEcc
Confidence 2345567788886 79999999986 89999999988776655544322 1211 22333
Q ss_pred -CCC-EEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 599 -TRN-RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 599 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.+. ++++|+.||.|++||+.+++.......+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 233 566788899999999999988777665544 799999999999999998776 555554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=261.15 Aligned_cols=243 Identities=14% Similarity=0.097 Sum_probs=201.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeee--------------------------------------
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEID-------------------------------------- 451 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------------- 451 (1131)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977665 57899999999987211111222
Q ss_pred ----------------cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C--CCceeEEec--CCccCeEEEeecccCC
Q 001178 452 ----------------AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L--SGRKLFQFE--GHEAPVYSVCPHQKEN 510 (1131)
Q Consensus 452 ----------------~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~--~~~~~~~~~--~h~~~v~~~~~~~~~~ 510 (1131)
+|.+.|++++|+|+++. ++++++.|+.|+||| . +++.+..+. .|...|.+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 35557999999999993 248999999999999 6 688888876 5678999999965 5
Q ss_pred ccEEEEEecCCeEEEEeCCCCceeE----EecCCCceEEEEEEccC---CCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 511 IHFIFSTAVDGKIKAWLYDNVGSRV----DYDAPGLWCTTMLYSAD---GSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+.+|++++.||.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 6899999999999999998766543 56678889999999999 999999986 899999999999988875
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----------------------CCCCCcceEEE
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----------------------GGLPSLPRLRF 640 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~i~~v~~ 640 (1131)
...+...+.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|..++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 53344589999999 9999999999999999999999988887632 12236889999
Q ss_pred cCCCCEEEEEE-CCCcEEEEec
Q 001178 641 NKEGNLLVVTT-ADQGIKILAN 661 (1131)
Q Consensus 641 sp~~~~l~~~~-~dg~i~iw~~ 661 (1131)
+|+++++++++ .++.|++|++
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEe
Confidence 99999999999 8999999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-27 Score=261.20 Aligned_cols=267 Identities=9% Similarity=0.073 Sum_probs=208.6
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
.+.+++. ++++|+.||+|++||+.+++.+.. +. ...|.+++|+|+ +++++.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 3445665 699999999999999999887642 11 346778888888 9999999999
Q ss_pred EEEEec---------CCCccceeeeeecCcCCeeEEEEec--CCCceEEEEEcCCCcEEEEe-CCCceeEEec-CCccCe
Q 001178 434 HLYTYQ---------GSNDLCQSLEIDAHVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE-GHEAPV 500 (1131)
Q Consensus 434 ~vwd~~---------~~~~~~~~~~~~~h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~-~h~~~v 500 (1131)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++.+.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3322221 1236778999999999 998 899999999999999 7777766654 455689
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999965 5689999999999999999998877 67777 889999999999999999998 3499999999887
Q ss_pred eeEEEeccc--CCce--EEEEEeCCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC---CCCEEEEE
Q 001178 579 LKRTYIGFR--KKSA--GVVQFDTTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK---EGNLLVVT 650 (1131)
Q Consensus 579 ~~~~~~~~~--~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp---~~~~l~~~ 650 (1131)
.+..+..+. ...+ .+++|+|++++|++++. |+.|++|++......... .++..++|++ +...++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 665444311 1122 36999999999999998 999999999765433222 1467778888 88899999
Q ss_pred ECCCcEEEEecC
Q 001178 651 TADQGIKILANA 662 (1131)
Q Consensus 651 ~~dg~i~iw~~~ 662 (1131)
+.||.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999988643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-24 Score=256.80 Aligned_cols=336 Identities=13% Similarity=0.117 Sum_probs=256.3
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC--CCCeeeEEEec
Q 001178 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE--SEGALKRTYIG 585 (1131)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~ 585 (1131)
++++.++++++.|++|.+||..+++....+..... +..++|+|||++|++++. ++.|.+||+ .+++.+..+..
T Consensus 146 ~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~----d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 146 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECC----CCeEEEEECcCCCCcEEEEEec
Confidence 34567889999999999999999888877764333 889999999999999986 689999999 88988888874
Q ss_pred ccCCceEEEEEeC----CCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccC---------CCCCcceEEEcCCCCEE-EEE
Q 001178 586 FRKKSAGVVQFDT----TRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEG---------GLPSLPRLRFNKEGNLL-VVT 650 (1131)
Q Consensus 586 ~~~~~v~~~~~s~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---------~~~~i~~v~~sp~~~~l-~~~ 650 (1131)
......++|+| +++++++++ .+++|.+||..+++++..+...+ ....+..+.++|++..+ ++.
T Consensus 221 --g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 221 --GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp --CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred --CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 33578899999 999999987 48999999999999998887532 12257788999976654 455
Q ss_pred ECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCC
Q 001178 651 TADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEK 730 (1131)
Q Consensus 651 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 730 (1131)
..++.|.+||..+... .
T Consensus 299 ~~~g~i~vvd~~~~~~-l-------------------------------------------------------------- 315 (543)
T 1nir_A 299 KETGKVLLVNYKDIDN-L-------------------------------------------------------------- 315 (543)
T ss_dssp TTTTEEEEEECTTSSS-C--------------------------------------------------------------
T ss_pred CCCCeEEEEEecCCCc-c--------------------------------------------------------------
Confidence 5678898888754410 0
Q ss_pred ceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcccee
Q 001178 731 PRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAA 810 (1131)
Q Consensus 731 ~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 810 (1131)
. +..
T Consensus 316 -----------~--------------------------------------------------~~~--------------- 319 (543)
T 1nir_A 316 -----------T--------------------------------------------------VTS--------------- 319 (543)
T ss_dssp -----------E--------------------------------------------------EEE---------------
T ss_pred -----------e--------------------------------------------------eEE---------------
Confidence 0 000
Q ss_pred eeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC----CCCCeeEEEEeC
Q 001178 811 VAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHP 884 (1131)
Q Consensus 811 ~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~ 884 (1131)
+ .+...+..++|+|||+++++++ +++|.+||+.+++++..+.. |.+....+ ++|
T Consensus 320 -----------------i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 320 -----------------I--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp -----------------E--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred -----------------e--ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 0 0123355789999999877665 68999999999999988874 44433333 577
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEe-------CCCcEEEEEcCCC
Q 001178 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSG-------SDAQLIFWNTDTW 949 (1131)
Q Consensus 885 ~~~~~la~g~-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-------~Dg~v~lwd~~~~ 949 (1131)
+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++|+|||++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 4578888876 689999999998 899999999999999999999999999987 2678999999886
Q ss_pred ceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-
Q 001178 950 EKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF- 1028 (1131)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~- 1028 (1131)
+...... .+..+.+...+...+..+.|+|||+.|+++.
T Consensus 460 ~~~~~~~-----------------------------------------~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 460 DAKYQVL-----------------------------------------PIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp TSCCEEE-----------------------------------------CHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCeEEe-----------------------------------------echhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 5321100 0001111111256889999999999888773
Q ss_pred ----cCCcEEEEECCCCceeeEecCC
Q 001178 1029 ----TDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1029 ----~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.|+.|.|||..+++++..+...
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999888753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=265.18 Aligned_cols=248 Identities=8% Similarity=-0.016 Sum_probs=174.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC-----
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP----- 419 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp----- 419 (1131)
.|...+....+++++. +||+|+.|++|+|||+.+++......+ ..+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 4555666666777776 799999999999999998876432111 24789999999999998
Q ss_pred ---CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE---
Q 001178 420 ---DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ--- 492 (1131)
Q Consensus 420 ---dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~--- 492 (1131)
||++||+|+.|++|+|||+.++.... .+.+|..+|.+++|+|++.. +|++++.|++|++|| .+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998876443 56789999999999999865 799999999999999 55543221
Q ss_pred ----------------------ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEE-
Q 001178 493 ----------------------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLY- 549 (1131)
Q Consensus 493 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~- 549 (1131)
..+|...+.++.|.. +++..+++++.|+++++||+........+..+...+..+.+
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 236778888888863 56789999999999999999876655554444433333332
Q ss_pred -----------------cc-CCC-EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 550 -----------------SA-DGS-RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 550 -----------------s~-~g~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
.| .+. ++++++. ++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESSE
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence 22 233 4445543 89999999999998888887665 899999999999999998776
Q ss_pred cEEEEEcC
Q 001178 611 QIKFWDMD 618 (1131)
Q Consensus 611 ~i~iwd~~ 618 (1131)
+.+|.+.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 6666553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=257.29 Aligned_cols=274 Identities=11% Similarity=0.099 Sum_probs=214.4
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCEEEEEeCCCe
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIGVAFTKHL 432 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~las~~~d~~ 432 (1131)
+|+|+++ ++++++.|++|.+||..+++.+.. +. ++. +.+++|+|||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 789999999999999999987652 33 443 889999999999999999999
Q ss_pred EEEEEe--cCCCccceeeeeecCcCCeeEEEEec----CCCceEEEEEc-CCCcEEEEe-CCCceeEEecCC--------
Q 001178 433 IHLYTY--QGSNDLCQSLEIDAHVGGVNDLAFSY----PNKQLCIVTCG-DDKLIRVWD-LSGRKLFQFEGH-------- 496 (1131)
Q Consensus 433 i~vwd~--~~~~~~~~~~~~~~h~~~V~~l~~s~----d~~~~~l~s~s-~d~~i~iwd-~~~~~~~~~~~h-------- 496 (1131)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.||| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765443 444 445689999999 999 566666 589999999 888888877642
Q ss_pred --cc-CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 497 --EA-PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 497 --~~-~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
.. .+.++.+++.. ..++++...++.|.+||+.+.+... .+ .+...+..+.|+|+|+++++++. .++.|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 22 68888887643 3677788899999999998765433 33 24556788999999999887653 2678999
Q ss_pred EeCCCCeeeEEEec----ccCCceEEEEEeCC-CCEEEEEE-cCCcEEEEEcCC-------CeEEEEEeccCCCCCcceE
Q 001178 572 WNESEGALKRTYIG----FRKKSAGVVQFDTT-RNRILAAG-EDNQIKFWDMDN-------VNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 572 wd~~~~~~~~~~~~----~~~~~v~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~i~~v 638 (1131)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||+.+ .+.++.+..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988874 222 12222 5777 44555554 589999999998 889999987764 57889
Q ss_pred EEcCCCCEEEEEEC-------CCcEEEEecCCC
Q 001178 639 RFNKEGNLLVVTTA-------DQGIKILANADG 664 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~-------dg~i~iw~~~~~ 664 (1131)
.++|++++|++++. +++|.+||+.++
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 99999999999872 679999998776
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=239.59 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=217.3
Q ss_pred CCcEEEEEEecCCCcEEEEEc----CCC----eEEEEEC--CCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGC----GDG----EITLWDV--GLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
...|...+|++.|..++++|+ .|| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888899999988888886 467 8999999 888765321 2456777777777
Q ss_pred EcC--------------CCCEEEEEeCC------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 417 WSP--------------DGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 417 ~sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
+++ .+..++.++.+ +.|++||+.++. . ..+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~---~~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-Q---FVVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-C---EEEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-C---EEEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 664 26677766654 799999998643 3 25778999999999999999 7888887
Q ss_pred CC---cEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEE-EEecCCe--EEEEeCCCCceeEEecCCCceEEEEEE
Q 001178 477 DK---LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-STAVDGK--IKAWLYDNVGSRVDYDAPGLWCTTMLY 549 (1131)
Q Consensus 477 d~---~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 549 (1131)
|+ .|++|| .+++. ..+..|...+.+++|+| +++.|+ +++.|+. |++||++++.. ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 999999 55554 46777888999999965 556666 6666654 99999987654 456667778999999
Q ss_pred ccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC---CcEEEEEcCCCeEEEEE
Q 001178 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED---NQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 550 s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~ 626 (1131)
+|||++|++++. .++...|++||..+++.. .+.. +...+..++|+|+|++|++++.+ +.|++||+.+++.. .+
T Consensus 275 spdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l 350 (415)
T 2hqs_A 275 FPDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL 350 (415)
T ss_dssp CTTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred CCCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence 999999998873 233448999999887643 3333 23467889999999999988764 58999999988764 33
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCC---cEEEEecCCC
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ---GIKILANADG 664 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg---~i~iw~~~~~ 664 (1131)
..+ . .+.+++|+|+|++|++++.++ .|++|++..+
T Consensus 351 ~~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 351 SST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CCS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred cCC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 322 2 689999999999999988877 7899987543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=254.11 Aligned_cols=303 Identities=12% Similarity=0.087 Sum_probs=209.1
Q ss_pred CCcEEEEEEecCCCcEEEEEcC-CC-----eEEEEECCCCcccccccceeec-----ccccccceeceeccCCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCG-DG-----EITLWDVGLRERLVSKPFKIWD-----MSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
...|++++|||||++ |++++. |+ .|++||+.+++........-.. +.......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 557999999999995 777776 88 9999999998764311100000 00000000000000001347899
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEecCCC--ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 416 AWSPDGNFIGVAFTKHLIHLYTYQGSN--DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 416 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
+|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 222 3667888999999999999 677776 46999999 44544433
Q ss_pred ecCCccC----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001178 493 FEGHEAP----------------VYSVCPHQKENIHFIFSTAVDG---------------------------------KI 523 (1131)
Q Consensus 493 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg---------------------------------~i 523 (1131)
...+... +.+++|+ +||+.|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3333332 3667775 5668888887765 78
Q ss_pred EEEeCCC-CceeEEec--CCCceEEEEEEccCCCEEEEEee-cCCCCceEEEEeCCCCeeeEEEecccCC---ceEEEEE
Q 001178 524 KAWLYDN-VGSRVDYD--APGLWCTTMLYSADGSRLFSCGT-SKEGDSHLVEWNESEGALKRTYIGFRKK---SAGVVQF 596 (1131)
Q Consensus 524 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~ 596 (1131)
.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||..+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8999987 66544332 35668999999 99999998764 2234678999999999887777655432 2457899
Q ss_pred eCCCCEEEEEEcCCcEEEEEcC-CCeEEEEEeccCCCCCcceE-EEcCCCCEEEEEEC-CC--cEEEEecCC
Q 001178 597 DTTRNRILAAGEDNQIKFWDMD-NVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTA-DQ--GIKILANAD 663 (1131)
Q Consensus 597 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~~~~~-dg--~i~iw~~~~ 663 (1131)
+|+|+++++++.||.+++|.+. .+. ...+..+ ...+..+ .|+|+++.++..+. ++ .++||++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988889999988888765 344 5544433 2356676 59999997765544 44 889998753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=229.70 Aligned_cols=289 Identities=12% Similarity=0.076 Sum_probs=214.0
Q ss_pred cccCCCC----CcccccCCCccccee--eec-cCCCcEEEEEEec--------------CCCcEEEEEcC--C---CeEE
Q 001178 320 ATYPVPS----QQATWSLDDLPRAVA--CTM-HQGSSVVSMDFHP--------------FHHTLLVVGCG--D---GEIT 373 (1131)
Q Consensus 320 ~~~s~~~----~~~~~~~~~~~~~~~--~~~-~h~~~V~~~~fsp--------------dg~~llasg~~--d---g~v~ 373 (1131)
+.+..+| .+.+|......++.+ ..+ .|...+..+++++ .+.++++++.. + +.|+
T Consensus 83 ~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~ 162 (415)
T 2hqs_A 83 VTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELR 162 (415)
T ss_dssp EEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEE
T ss_pred EEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEE
Confidence 3344566 577787721223333 334 4888888888886 25554444433 2 7999
Q ss_pred EEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCCccceeeee
Q 001178 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQSLEI 450 (1131)
Q Consensus 374 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~~ 450 (1131)
+||+.++... .+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+
T Consensus 163 i~d~~g~~~~--------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l 218 (415)
T 2hqs_A 163 VSDYDGYNQF--------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QV 218 (415)
T ss_dssp EEETTSCSCE--------------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EE
T ss_pred EEcCCCCCCE--------------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----Ee
Confidence 9999754322 3567889999999999999999999875 9999999988643 36
Q ss_pred ecCcCCeeEEEEecCCCceEEE-EEcCCCc--EEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEec-CC--eEE
Q 001178 451 DAHVGGVNDLAFSYPNKQLCIV-TCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DG--KIK 524 (1131)
Q Consensus 451 ~~h~~~V~~l~~s~d~~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~ 524 (1131)
..|...+.+++|+|||+. |+ +++.|+. |++||..+.....+..|...+.+++|+| +++.|++++. ++ .|.
T Consensus 219 ~~~~~~~~~~~~spdg~~--la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~ 294 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVY 294 (415)
T ss_dssp ECCSSCEEEEEECTTSSE--EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEE
T ss_pred ecCCCcccCEEEcCCCCE--EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEE
Confidence 678889999999999994 55 7766655 9999954445577888999999999964 5678887775 45 677
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
+||+.++.. ..+..+...+.+++|+|||++|++++.. +++..|++||+.+++.. .+..+ . .+..++|+|++++|+
T Consensus 295 ~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~-~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 295 KVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSST-F-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCS-S-SCEEEEECTTSSEEE
T ss_pred EEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCC-C-CcCCeEEcCCCCEEE
Confidence 778877653 3445566789999999999999988752 23579999999988764 34433 2 788999999999999
Q ss_pred EEEcCC---cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 605 AAGEDN---QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 605 ~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
+++.++ .|++||+..+ ....+..+. ..|.+++|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~g~-~~~~l~~~~--~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGR-FKARLPATD--GQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETTSC-CEEECCCSS--SEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECCCC-cEEEeeCCC--CCCcCCcccccc
Confidence 988777 7999998754 445555443 379999999964
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=245.09 Aligned_cols=244 Identities=11% Similarity=0.042 Sum_probs=184.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----eEEEEEecCCCccceeeeeecCc------------------------CCee
Q 001178 409 SISVSRVAWSPDGNFIGVAFT-KH-----LIHLYTYQGSNDLCQSLEIDAHV------------------------GGVN 458 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~~~~h~------------------------~~V~ 458 (1131)
...|.+++|||||++|++++. |+ .|.+||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999986432 222222 2388
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCc---eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGR---KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV 535 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 535 (1131)
+++|||||+ +|++++. +.|++||..+. .+..+..|...+..++|+| ||++|++++ ++.|++||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777765 89999995444 6677888888999999964 668888877 5699999998866554
Q ss_pred EecCCCce----------------EEEEEEccCCCEEEEEeecCC-----------------------------CCceEE
Q 001178 536 DYDAPGLW----------------CTTMLYSADGSRLFSCGTSKE-----------------------------GDSHLV 570 (1131)
Q Consensus 536 ~~~~~~~~----------------v~~~~~s~~g~~l~~~~~~~~-----------------------------~~~~i~ 570 (1131)
....+... +..+.|+|||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333221 477999999999999875221 112789
Q ss_pred EEeCCC-CeeeEEEec-ccCCceEEEEEeCCCCEEEEEEc-----CCcEEEEEcCCCeEEEEEeccCCC--CCcceEEEc
Q 001178 571 EWNESE-GALKRTYIG-FRKKSAGVVQFDTTRNRILAAGE-----DNQIKFWDMDNVNMLTSTEAEGGL--PSLPRLRFN 641 (1131)
Q Consensus 571 iwd~~~-~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~v~~s 641 (1131)
+||+.+ ++....... .+...+..++| |||++|++++. +..|++||+.+++....+..+... ..+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876544332 23346888999 99999987664 567999999999877766554321 135689999
Q ss_pred CCCCEEEEEECCCcEEEEecC
Q 001178 642 KEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 642 p~~~~l~~~~~dg~i~iw~~~ 662 (1131)
|||+++++++.+|.++||.+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999999999999988888764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=253.20 Aligned_cols=287 Identities=9% Similarity=0.090 Sum_probs=207.1
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~l 424 (1131)
..+.+++|||||+ ++++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++|
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l 75 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA 75 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence 3467889999998 4666 689999999999987643 3445554 49999999999999
Q ss_pred EEEeCC---------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEec
Q 001178 425 GVAFTK---------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFE 494 (1131)
Q Consensus 425 as~~~d---------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~ 494 (1131)
|+++.+ +.|.+||+.+++. .......+|...+..++|||||+ .|+.++. +.|++|| .+++......
T Consensus 76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence 999874 7888999999875 22223345666699999999999 5777665 7999999 5666555444
Q ss_pred CCccCe------------------EEEeecccCCccEEEEEecCC----------------------------------e
Q 001178 495 GHEAPV------------------YSVCPHQKENIHFIFSTAVDG----------------------------------K 522 (1131)
Q Consensus 495 ~h~~~v------------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~ 522 (1131)
.+...+ .+++|+ +||+.|++++.|+ .
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 444333 678885 5668888887553 7
Q ss_pred EEEEeCCCCceeEEecCC------CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCce----E
Q 001178 523 IKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA----G 592 (1131)
Q Consensus 523 i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v----~ 592 (1131)
|++||+.++.....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..++...+ .
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999887755555543 567899999999999877765444467899999999987776654433333 3
Q ss_pred EEEEeCCCCEEEE--EEcCC------cEEEEE-cCCCeE--EEEEeccCCCCCcce-EEEcCCCCEEEEEECC---CcEE
Q 001178 593 VVQFDTTRNRILA--AGEDN------QIKFWD-MDNVNM--LTSTEAEGGLPSLPR-LRFNKEGNLLVVTTAD---QGIK 657 (1131)
Q Consensus 593 ~~~~s~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~i~~-v~~sp~~~~l~~~~~d---g~i~ 657 (1131)
.++|+|||+.|+. +..++ .|++|| ..++.. ...+... + ..+.. ++|+|||+.|+..+.+ +.++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 387 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQ 387 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence 6899999997765 44566 577777 344441 3333221 1 13444 6899999999877665 7889
Q ss_pred EEecCC
Q 001178 658 ILANAD 663 (1131)
Q Consensus 658 iw~~~~ 663 (1131)
+|++..
T Consensus 388 l~~~~~ 393 (723)
T 1xfd_A 388 LYSANT 393 (723)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 998754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=244.09 Aligned_cols=386 Identities=10% Similarity=0.074 Sum_probs=250.4
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC--ceEEEEEeCCCCEEEEEEcC---------CcE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK--SAGVVQFDTTRNRILAAGED---------NQI 612 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d---------g~i 612 (1131)
+.+++|+|||+++++ +. ++.|++||..+++....+..+... .+..++|+|||++|++++.+ +.|
T Consensus 19 ~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred ccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 567899999997765 33 779999999999888777665431 38899999999999998864 788
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
++||+.+++.........+...+..++|+|||+.|+.++. +.|++|++.++.. .+....+...+
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~-------------- 157 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGV-------------- 157 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTT--------------
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCc--------------
Confidence 8999999876322222233334889999999999999886 7999999876621 11000000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
+..+. .-|-.. .+-...+..
T Consensus 158 ---------------------------------------~~~g~-----~~~v~~----------------ee~~~~~~~ 177 (723)
T 1xfd_A 158 ---------------------------------------IYNGL-----SDWLYE----------------EEILKTHIA 177 (723)
T ss_dssp ---------------------------------------EEEEE-----CCHHHH----------------HTTSSSSEE
T ss_pred ---------------------------------------eECcc-----cceeEE----------------EEeccCcce
Confidence 00000 000000 001224578
Q ss_pred EEeecCCceEEEeeec-ceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEE
Q 001178 773 LLYTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSA 851 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~ 851 (1131)
++|||||+.|++++.+ +.+.+|++.... ..+...+..+.|+++|.. .
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~G~~---~ 225 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------GSIYPTVKPYHYPKAGSE---N 225 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------SSSSCCCEEEECCBTTSC---C
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccC-----------------------------CcCCCcceeccCCCCCCC---C
Confidence 9999999999988865 456666653210 012234678899888863 2
Q ss_pred eCCeEEEEECCCceeEEEEeCC------CCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecceeEEeeccc-ccCe
Q 001178 852 GGGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVKTKLKGH-QKHI 920 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~~~~~~~~h-~~~V 920 (1131)
.+..|++||+.+++....+..+ ...+..++||| |+++|++.... ..|++||+.++++...+..+ .+.+
T Consensus 226 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL 304 (723)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred CeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence 2457999999998876666654 55789999999 88888776533 57999999998877666543 3444
Q ss_pred e----EEEEccCCCEEEE--EeCCC------cEEEEE-cCCCceeeeeeeecCCCCCCCCceE-EEEcCCCcEEEEE-eC
Q 001178 921 T----GLAFSTNLNILVS--SGSDA------QLIFWN-TDTWEKRKSIAIQLPAGKLPVGETR-VQFHSDQVRLLVN-HE 985 (1131)
Q Consensus 921 ~----~l~~s~dg~~l~s--~~~Dg------~v~lwd-~~~~~~~~~~~~~~~~~~~~~~v~~-v~~s~d~~~l~~~-~d 985 (1131)
. .++|||||+.|+. ...|+ .|.+|| ..+++... ......+. ..+.. ++|+|||+.|+.. .+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD--WDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS--SCEEEEEEEETTTTEEEEEESS
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC--eEEEeeeEEcCCCCEEEEEEcC
Confidence 3 8899999998775 45666 566777 34432000 01111111 23343 6999999999764 33
Q ss_pred ---CeEEEEeCCCcc--cceeeecCCCCCCCeEEEEEccCCCEEEEEecC-C--cEEEEECCCCceeeEe
Q 001178 986 ---TQLAIYDGSKME--CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-G--SIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 986 ---~~i~vwd~~~~~--~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-g--~i~vwd~~~~~~~~~~ 1047 (1131)
+.+++|++.... ....+.....+...+..++|||||++|+..... + ...+++..++..+..+
T Consensus 381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 678999886432 233333211125678899999999988876532 2 3445666555544443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-20 Score=208.69 Aligned_cols=280 Identities=10% Similarity=0.058 Sum_probs=202.3
Q ss_pred EEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC-CC
Q 001178 353 MDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-KH 431 (1131)
Q Consensus 353 ~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~ 431 (1131)
..|.+++.+++++++.++.|.+||..+++.... ...+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 457777777889999999999999999887642 22345556 9999999997776665 88
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-C--cEEEEe-CCCceeEEecCCccCeEEEeecc
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-K--LIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-~--~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1131)
.|.+||+.+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+.. .....+++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECC
Confidence 9999999988751 224555666666699999999 56655555 3 899999 67777776654 34568888865
Q ss_pred cCCccEE-EEEecCCe-EEEEeCCCCceeE----EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--
Q 001178 508 KENIHFI-FSTAVDGK-IKAWLYDNVGSRV----DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL-- 579 (1131)
Q Consensus 508 ~~~~~~l-~s~s~dg~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~-- 579 (1131)
+++++ ++...++. |.+|+++...... ...........++|+|+|+++++++. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 44544 45556688 9999988654432 22233456899999999998777653 378999999999888
Q ss_pred -eEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeE--EEEEecc--CCCC---CcceEEEcCCCCEEEEE
Q 001178 580 -KRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNM--LTSTEAE--GGLP---SLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 580 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~i~~v~~sp~~~~l~~~ 650 (1131)
+..+... ..+..++|+|+++++++++ .++.|.+||+.+++. +..+... .... ....++|+|++++|+++
T Consensus 213 ~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 213 LLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp EEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred eeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEe
Confidence 7777643 3567899999999777655 578899999999887 4433322 1111 12458999999988766
Q ss_pred EC-CCcEEEEecCCC
Q 001178 651 TA-DQGIKILANADG 664 (1131)
Q Consensus 651 ~~-dg~i~iw~~~~~ 664 (1131)
+. ++.|.+|++...
T Consensus 291 ~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 291 ANISRELKVFTISGK 305 (331)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred cCCCCcEEEEEecCC
Confidence 65 569999998765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=233.77 Aligned_cols=237 Identities=9% Similarity=-0.001 Sum_probs=165.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCc-----------------CCeeEEEEecCCCceEEEE
Q 001178 412 VSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHV-----------------GGVNDLAFSYPNKQLCIVT 473 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~-----------------~~V~~l~~s~d~~~~~l~s 473 (1131)
+..+.|+ |..+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4457788 66777777788 8 9999998752 32 22222 56999999999 52 3444
Q ss_pred EcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-----CceeEEecCCCce-----
Q 001178 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-----VGSRVDYDAPGLW----- 543 (1131)
Q Consensus 474 ~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~----- 543 (1131)
. ++.|++||..+.....+..+...+.+++|+| +|+.|+++ .|+.|++|++.+ ++...........
T Consensus 99 ~--~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 T--QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp E--TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred E--CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 3 5999999955555556666777888888854 66788874 789999999987 5544333322222
Q ss_pred ---------EEEEEEccCCCEEEEEeecC-----------------------------CCCceEEEEeCCCCeeeEEEec
Q 001178 544 ---------CTTMLYSADGSRLFSCGTSK-----------------------------EGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 544 ---------v~~~~~s~~g~~l~~~~~~~-----------------------------~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
+.++.|+|||++|++++.+. ..+..|++||+.+++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 47899999999999987321 1357899999998886554432
Q ss_pred -ccCCceEEEEEeCCCCEEEEEEcCC-----cEEEEEcCCCeEEEEEeccCC---CCCcceEEEcC--CCCEEEEEECCC
Q 001178 586 -FRKKSAGVVQFDTTRNRILAAGEDN-----QIKFWDMDNVNMLTSTEAEGG---LPSLPRLRFNK--EGNLLVVTTADQ 654 (1131)
Q Consensus 586 -~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~---~~~i~~v~~sp--~~~~l~~~~~dg 654 (1131)
.+...+..++|+|||++|++++.++ .|++||+.+++....+..... ...+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2334688999999999999988775 899999999843333322111 11346789999 999999888888
Q ss_pred cEEEEecC
Q 001178 655 GIKILANA 662 (1131)
Q Consensus 655 ~i~iw~~~ 662 (1131)
.++||.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=208.72 Aligned_cols=276 Identities=9% Similarity=0.090 Sum_probs=211.6
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcC------CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCG------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
......+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+.+++|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~ 96 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATI 96 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEE
Confidence 3456688999999999875554433 67999999999876542 11 1234678999
Q ss_pred cCCCCEEEEE-eCCCeEEEEEecCCCccceeeeeecCcC---------CeeEEEEecCCCceEEEEE-cCCCcEEEEe-C
Q 001178 418 SPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVG---------GVNDLAFSYPNKQLCIVTC-GDDKLIRVWD-L 485 (1131)
Q Consensus 418 spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~---------~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd-~ 485 (1131)
+|||++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+++. +++++ +.++.|.+|| .
T Consensus 97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGG 172 (353)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETT
T ss_pred CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCC
Confidence 9999966554 557999999999987544 2333322 2789999999995 23333 4688999999 7
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC----CCceEEEEEEccCCCEEEEEee
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA----PGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
+++.+..+..+...+.+++|++ +++.+++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred CCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 7888777775666678888854 567899999999999999998887766554 3446888999999998887763
Q ss_pred cCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE
Q 001178 562 SKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF 640 (1131)
Q Consensus 562 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~ 640 (1131)
.++.|.+||..+++.+..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|
T Consensus 251 ---~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~ 321 (353)
T 3vgz_A 251 ---KAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLAL 321 (353)
T ss_dssp ---SSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEE
T ss_pred ---CCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEE
Confidence 26899999999999888877533 24589999999776665 68999999999999888876543 5789999
Q ss_pred cCCCCEEEEEECCC
Q 001178 641 NKEGNLLVVTTADQ 654 (1131)
Q Consensus 641 sp~~~~l~~~~~dg 654 (1131)
+|+|++++++..++
T Consensus 322 s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 322 SADGKTLYVSVKQK 335 (353)
T ss_dssp CTTSCEEEEEEECC
T ss_pred cCCCCEEEEEEccc
Confidence 99999887776654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-21 Score=236.30 Aligned_cols=321 Identities=10% Similarity=0.085 Sum_probs=219.0
Q ss_pred eeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee-EEecCCc-----------------cCeEEEeecccCCccEEEEE
Q 001178 457 VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL-FQFEGHE-----------------APVYSVCPHQKENIHFIFST 517 (1131)
Q Consensus 457 V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 517 (1131)
+..+.|+ |. .+++++.|+ | +|| .+|+.+ ..+..|. ..|.+++|+++ +.++++
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--TEEEEE-
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--CeEEEE-
Confidence 5567888 55 466667777 8 999 677663 4444333 46899999764 344444
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-----CeeeEEEecccCCc--
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-----GALKRTYIGFRKKS-- 590 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~-- 590 (1131)
.++.|++||+.+++... +..+...+.+++|+|||++|+++. ++.|++||+.+ ++............
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 45999999998765543 344555688899999999999964 78999999988 77665444332211
Q ss_pred -----------eEEEEEeCCCCEEEEEE---------------------------------cCCcEEEEEcCCCeEEEEE
Q 001178 591 -----------AGVVQFDTTRNRILAAG---------------------------------EDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 591 -----------v~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 626 (1131)
+..++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47799999999999987 4467999999998865544
Q ss_pred eccCCCCCcceEEEcCCCCEEEEEECCC-----cEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccc
Q 001178 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQ-----GIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLS 701 (1131)
Q Consensus 627 ~~~~~~~~i~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~ 701 (1131)
....+...+..++|+|||+.|++++.++ .|.+||..++.. ...
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~------------------------------- 299 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRT------------------------------- 299 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEE-------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeE-------------------------------
Confidence 3323334688999999999999887665 788887655410 000
Q ss_pred ccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCce
Q 001178 702 KAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIG 781 (1131)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 781 (1131)
T Consensus 300 -------------------------------------------------------------------------------- 299 (706)
T 2z3z_A 300 -------------------------------------------------------------------------------- 299 (706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC--CCCEEEEEe-CCeEEE
Q 001178 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK--NDSYVMSAG-GGKVSL 858 (1131)
Q Consensus 782 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~--dg~~la~~~-dg~i~v 858 (1131)
+...... .....+.+++|+| ||+++++++ ++.++|
T Consensus 300 ~~~~~~~------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 300 LFVETDK------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp EEEEECS------------------------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred EEEccCC------------------------------------------CeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 0000000 0111234578899 999888877 678888
Q ss_pred EECC-CceeEEEEeCCCCCeeE-EEEeCCCCcEEE-EEeCCC----cEEEEEeecceeEEeecccccCeeEEEEccCCCE
Q 001178 859 FNMM-NFKVMTTFMSPPPASTF-LAFHPQDNNIIA-IGMEDS----TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 859 wd~~-~~~~~~~~~~~~~~i~~-l~~s~~~~~~la-~g~~dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
|.+. ++..+..+..+...+.. ++|+| +++.|+ +++.++ .|+.||+.+++ ...+. |...+.+++|||||++
T Consensus 338 ~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 338 YLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSE
T ss_pred EEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCE
Confidence 8776 66777777777777876 89999 666554 455544 56666666665 33343 6778999999999999
Q ss_pred EEEEeCC----CcEEEEEcCCCc
Q 001178 932 LVSSGSD----AQLIFWNTDTWE 950 (1131)
Q Consensus 932 l~s~~~D----g~v~lwd~~~~~ 950 (1131)
|+..+.+ +.|++||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 8876544 469999998865
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=207.56 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=198.5
Q ss_pred EeecCCce-EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 774 LYTNSGIG-ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 774 ~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
.|.+++.. +++...++.|.+||+.. ++...... .+...+ +++|+|||+++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~ 58 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT--LGYDFV-DTAITSDCSNVVVTS 58 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE--CCCCEE-EEEECSSSCEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE--ccCCcc-eEEEcCCCCEEEEEe
Confidence 44555555 45555688898887644 22211111 124445 999999999777665
Q ss_pred --CCeEEEEECCCcee-EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC---cEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 853 --GGKVSLFNMMNFKV-MTTFMSPPPASTFLAFHPQDNNIIAIGMEDS---TIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 853 --dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
++.|.+||+.+++. ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+..+ ....+++|+
T Consensus 59 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 59 DFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp STTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred CCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 68999999999988 777776666666699999 888888655553 8999999999988877654 446899999
Q ss_pred cCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc---c
Q 001178 927 TNLNILVSS-GSDAQ-LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC---I 999 (1131)
Q Consensus 927 ~dg~~l~s~-~~Dg~-v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~---~ 999 (1131)
|||++|+++ ..++. |.+|++............... .......++|+|||++++++. ++.|++||+.+++. +
T Consensus 137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 137 PNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL 214 (331)
T ss_dssp TTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred CCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence 999865554 55688 999999864432211111111 124578999999999776643 78999999999888 6
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCce--eeEecCCccccCCCCCCCCccc-cEEEEEcCCC
Q 001178 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRL--RCRIAPSAYMSQASPNSSQTVF-PLVVTSHPQE 1075 (1131)
Q Consensus 1000 ~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-~~~v~~~p~~ 1075 (1131)
..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+...... ...... .-.++|+|+
T Consensus 215 ~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~spd- 283 (331)
T 3u4y_A 215 NAVGT----NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI------DPRPLFGANQMALNKT- 283 (331)
T ss_dssp EEEEC----SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC------CCGGGTTCCCEEECTT-
T ss_pred eeccC----CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc------CCCCcccccceEECCC-
Confidence 66554 35678999999999887766 478899999999887 3333221100 011111 124789994
Q ss_pred CCeE-EEEecCCcEEEEecCCCccccccc
Q 001178 1076 PNQL-AVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1076 ~~~l-~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+.+| +++..++.|.+||+......+...
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKVVGYVAG 312 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCEEEECTT
T ss_pred CCEEEEecCCCCcEEEEEecCCcccceec
Confidence 5555 555567799999998876544433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=203.66 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=176.6
Q ss_pred CCCCeeEEEecCCCCEEEEEe-C-CeEEEEECC--Cce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEe
Q 001178 832 AEDVVPCVALSKNDSYVMSAG-G-GKVSLFNMM--NFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNV 904 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~ 904 (1131)
+...+.+++|+|+|++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 456678899999999988887 4 899999997 554 344555444 789999999 777665555 5889999999
Q ss_pred ---ecceeEEeecccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcCC-Cceeeee--eeecCCCCCCCCceEEEEcCCC
Q 001178 905 ---RVDEVKTKLKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDT-WEKRKSI--AIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 905 ---~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~-~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.+.+.+..+..+ ..+.+++|+|+|++|++++ .|+.|.+||+.+ ++..... ...... ...+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE---GAGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST---TCCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC---CCCcceEEECCCC
Confidence 445555555544 4589999999999888877 899999999987 5432222 222221 2567889999999
Q ss_pred cEEEEE--eCCeEEEEeCCC--ccc--ceeeec---CCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECC--CC--ce
Q 001178 978 VRLLVN--HETQLAIYDGSK--MEC--IRQWVP---QDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDAD--SL--RL 1043 (1131)
Q Consensus 978 ~~l~~~--~d~~i~vwd~~~--~~~--~~~~~~---~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~--~~--~~ 1043 (1131)
++++++ .++.+++|++.. ++. ...... .......+.+++|+|||++|+++. .++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 987664 478999999953 432 222221 111134677899999999887555 78999999998 33 33
Q ss_pred eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCccccccc
Q 001178 1044 RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
+..+.... . +..++|+| ++.+|++++ .|+.|.+|++....+++...
T Consensus 270 ~~~~~~~~----------~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 316 (343)
T 1ri6_A 270 EGFQPTET----------Q---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEK 316 (343)
T ss_dssp EEEEECSS----------S---CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred eeeecCCC----------c---cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEc
Confidence 33332211 1 33588999 566676666 68999999776555544433
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=203.60 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=188.7
Q ss_pred EEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecC-CCc
Q 001178 365 VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG-SND 443 (1131)
Q Consensus 365 sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~-~~~ 443 (1131)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34668999999999877542 345788999999999999999987 78999999998 764
Q ss_pred cceeeeeecC-cCCeeEEEEecCCCceEEEEEc--CCCcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEE-EE
Q 001178 444 LCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIF-ST 517 (1131)
Q Consensus 444 ~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~ 517 (1131)
.. ...+| ...+.+++|+||++ ++++++ .++..+||. ..+.....+..+. .+..++|++ +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 32 23344 46789999999999 677776 445566665 4555555565444 488888865 456665 78
Q ss_pred ecCCeEEEEeCCCC-ceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCeeeEEEecccCCceEEEE
Q 001178 518 AVDGKIKAWLYDNV-GSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGALKRTYIGFRKKSAGVVQ 595 (1131)
Q Consensus 518 s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~ 595 (1131)
+.++.+++|+++.. .....+..+...+.++.|+|+|+++++++. .++.+.+|++. .+.....+..+. ..+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSA-YGDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCS-EEEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCC-cccCCeE
Confidence 89999999997543 334455566678999999999999887763 14566777654 344555555544 3788899
Q ss_pred EeCCCCEEEEEEcC-----------CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 596 FDTTRNRILAAGED-----------NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 596 ~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+++.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999887644443323334789999999999998887653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-19 Score=200.26 Aligned_cols=273 Identities=13% Similarity=0.153 Sum_probs=190.4
Q ss_pred CcEEEEEcCCCeEEEEECCC-CcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEE
Q 001178 360 HTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK-HLIHLYT 437 (1131)
Q Consensus 360 ~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d-~~i~vwd 437 (1131)
++++++++.|+.|++||+.. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 45666668899999999963 322110 112466788999999999999988886 9999999
Q ss_pred ec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC-CCc---eeEEecCCccCeEEEeecccCCc
Q 001178 438 YQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGR---KLFQFEGHEAPVYSVCPHQKENI 511 (1131)
Q Consensus 438 ~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~-~~~---~~~~~~~h~~~v~~~~~~~~~~~ 511 (1131)
+. +++ ......+..+. .+.+++|+|+++. +++++..++.|.+||. .+. .+..+.. ...+.+++|++ ++
T Consensus 67 ~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--dg 140 (343)
T 1ri6_A 67 IAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--DN 140 (343)
T ss_dssp ECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--TS
T ss_pred ecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--CC
Confidence 98 444 22333444443 7899999999994 3445556899999994 332 3333433 34578888854 55
Q ss_pred cEEEEEe-cCCeEEEEeCCC-CceeE----EecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCee--e
Q 001178 512 HFIFSTA-VDGKIKAWLYDN-VGSRV----DYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGAL--K 580 (1131)
Q Consensus 512 ~~l~s~s-~dg~i~~wd~~~-~~~~~----~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~--~ 580 (1131)
+.+++++ .++.|++||+.+ +.... .... ....+..++|+|+|+++++++. .++.|.+|++. +++. .
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEE
Confidence 6777776 899999999987 43321 2222 3446889999999998877652 27899999985 3443 2
Q ss_pred EEEeccc-----CCceEEEEEeCCCCEEEEEE-cCCcEEEEEcC--CC--eEEEEEeccCCCCCcceEEEcCCCCEEEEE
Q 001178 581 RTYIGFR-----KKSAGVVQFDTTRNRILAAG-EDNQIKFWDMD--NV--NMLTSTEAEGGLPSLPRLRFNKEGNLLVVT 650 (1131)
Q Consensus 581 ~~~~~~~-----~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~ 650 (1131)
..+.... ...+..++|+|++++++++. .++.|++|++. ++ +.+..+.... .+..++|+|+|++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEEe
Confidence 2332111 12455799999999887554 78999999998 33 3444444332 37899999999988888
Q ss_pred E-CCCcEEEEecC
Q 001178 651 T-ADQGIKILANA 662 (1131)
Q Consensus 651 ~-~dg~i~iw~~~ 662 (1131)
+ .++.+.+|++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 8 58999999654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-19 Score=200.18 Aligned_cols=199 Identities=13% Similarity=0.108 Sum_probs=153.9
Q ss_pred eEEEecCCCCEEEEE-------------eCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 837 PCVALSKNDSYVMSA-------------GGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
.+++|+|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 346677777666666 358899999999998888775 45688899999 78877777 68999999
Q ss_pred eecceeEEeecccccCeeEEEEccCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeec
Q 001178 904 VRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA------------------------QLIFWNTDTWEKRKSIAIQL 959 (1131)
Q Consensus 904 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg------------------------~v~lwd~~~~~~~~~~~~~~ 959 (1131)
+.+++.+..+..+.. ...+.|+|||+.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 999988877765441 11337899998776554332 4689999987754 22221
Q ss_pred CCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECC
Q 001178 960 PAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDAD 1039 (1131)
Q Consensus 960 ~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~ 1039 (1131)
.....+..++|+|||++++++ ++.|++||+.+++.+..+... ..+.+++|+|||++|++++.++.|++||+.
T Consensus 238 ---~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 ---IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ---ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ---CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 112467789999999999988 799999999999888776543 467899999999999999999999999999
Q ss_pred CCceeeEecCC
Q 001178 1040 SLRLRCRIAPS 1050 (1131)
Q Consensus 1040 ~~~~~~~~~~~ 1050 (1131)
+++.+..+...
T Consensus 310 ~~~~~~~~~~~ 320 (337)
T 1pby_B 310 TLEKKGQVDLP 320 (337)
T ss_dssp TCCEEEEEECG
T ss_pred CCcEEEEEEcC
Confidence 99988887644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-19 Score=198.35 Aligned_cols=273 Identities=13% Similarity=0.115 Sum_probs=205.8
Q ss_pred ccceEEEEeecCCceEEEeee-------cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEE
Q 001178 767 ASKVARLLYTNSGIGILALWS-------NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1131)
...+..++++|+|+.+++++. ++.+.+||... ++.... + .....+..+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----------------------~~~~~~-~--~~~~~~~~~ 94 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----------------------LEVTQA-I--HNDLKPFGA 94 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT----------------------CCEEEE-E--EESSCCCSE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----------------------CeEEEE-E--ecCCCcceE
Confidence 456778999999998888774 45676666433 322221 0 012346679
Q ss_pred EecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCC---------eeEEEEeCCCCcEEEEEe--CCCcEEEEEeec
Q 001178 840 ALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPA---------STFLAFHPQDNNIIAIGM--EDSTIQIYNVRV 906 (1131)
Q Consensus 840 ~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~s~~~~~~la~g~--~dg~I~iwd~~~ 906 (1131)
+|+|||++++++. ++.|.+||..+++.+..+..+... +.+++|+| +++++++++ .++.|.+||..+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~ 173 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGN 173 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTT
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCC
Confidence 9999999776665 589999999999998888765432 78899999 676666655 478899999999
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-- 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-- 984 (1131)
++.+..+..+...+.+++|+|||++|++++.++.|.+||+.+++....... ........+..++|+|++++++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL--LDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC--CCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc--CCCCCCcccceEEECCCCCEEEEEeCC
Confidence 999888886667789999999999999999999999999999776544332 1111224577899999999887754
Q ss_pred CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCc
Q 001178 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063 (1131)
Q Consensus 985 d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1131)
++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||..+++.+..+....
T Consensus 252 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~------------ 314 (353)
T 3vgz_A 252 AAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT------------ 314 (353)
T ss_dssp SSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS------------
T ss_pred CCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC------------
Confidence 5899999999999888776542 25689999999777666 68999999999999887765321
Q ss_pred cccEEEEEcCCCCCeEEEEecCC
Q 001178 1064 VFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1064 v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
.+..++|+| ++++|+++..++
T Consensus 315 -~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 315 -HPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp -EEEEEEECT-TSCEEEEEEECC
T ss_pred -CCCeEEEcC-CCCEEEEEEccc
Confidence 345689999 556565555553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.2e-19 Score=200.88 Aligned_cols=314 Identities=15% Similarity=0.131 Sum_probs=200.8
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCC--CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQN--PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
...+..+++++++..+++++.++ +++|+....... ..+.. ..+........ + .+...|.+++|+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~--~~~~~v~~l~~spd 103 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDP-----NKIVDKVQGLL----V--PMKFPIHHLALSCD 103 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCT-----TCEEECCCCEE----E--CCSSCEEEEEECTT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCc-----ccccccCcccc----c--cCCCcccEEEEcCC
Confidence 34578899999999999988887 888775431110 00000 00000000000 1 35678999999999
Q ss_pred CCEEE----EEe-CCeEEEEECCCc--------ee---EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 845 DSYVM----SAG-GGKVSLFNMMNF--------KV---MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 845 g~~la----~~~-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
|++|+ +++ |++|+|||+.++ +. +..+.+|...|.+++|+|+++.+||+++.||+|++||+.++.
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~ 183 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV 183 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc
Confidence 99999 566 799999998765 22 445567889999999999558999999999999999999988
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC-CCCCCCCceEEEEcCCCcEEEEEe--C
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP-AGKLPVGETRVQFHSDQVRLLVNH--E 985 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~-~~~~~~~v~~v~~s~d~~~l~~~~--d 985 (1131)
.+....+|...|++++|+|+|++|++++.||+|++||+. ++.......... ...+...+.+++|++++.++++.. +
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 777778899999999999999999999999999999998 333222211111 111224789999999999887632 3
Q ss_pred C------eEEEEeCCCccc--c---eeeecC----CCCCCCeEEEEEccCCCEEEEEec-CCcEEEEECCCCc-ee--eE
Q 001178 986 T------QLAIYDGSKMEC--I---RQWVPQ----DVLSSPISSAAYSCNSQLIYATFT-DGSIGVFDADSLR-LR--CR 1046 (1131)
Q Consensus 986 ~------~i~vwd~~~~~~--~---~~~~~~----~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~~~-~~--~~ 1046 (1131)
| .+++|++...+. . ..+... .....+-..+.+-+|.+++++++. .+.|.|....... .. ..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 2 389999986421 1 111111 011233344455588888877774 3446666543211 01 11
Q ss_pred ecCCc--cccCCCCCCCCccccEEEEE--cCCC------------CCeEEEEecCCcEEEEecCC
Q 001178 1047 IAPSA--YMSQASPNSSQTVFPLVVTS--HPQE------------PNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1047 ~~~~~--~~~~~~~~~~~~v~~~~v~~--~p~~------------~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.... .+|.. ......+++.+++ +..+ --.|.+-+.||.+..|.+-.
T Consensus 343 ~~d~~ra~lP~~--~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVT--DKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBC--TTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCC--CCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11111 11111 1122233333333 2211 12788889999999999865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-19 Score=196.08 Aligned_cols=301 Identities=11% Similarity=0.101 Sum_probs=201.9
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCc--eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL--WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR-- 587 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 587 (1131)
+++++++.++.|.+||+.+.+....+..... .+..++|+|+|+++++++. .++.|.+||..+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654332 4788999999988776653 26799999999999887776432
Q ss_pred --CCceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 588 --KKSAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 588 --~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
...+..++|+|+++++++++ .++.|++||+.+++.+..+.... .+..++|+|++++++++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11456789999999998886 57999999999998887776532 57889999999988887 6
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
+.|.+||+.++. ....+...... ....++|+
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~~--------------~~~~~s~d---------------------------------- 184 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSWE--------------AETYAQPD---------------------------------- 184 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTTT--------------TTTBCCCB----------------------------------
T ss_pred CeEEEEECCCCc-EeeeeeccccC--------------CCceeCCC----------------------------------
Confidence 899999997762 21111100000 00022232
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceee--EEeecCCCCCCCCccceee
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQK--LWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~--iw~~~~~~~~~~~~~~~~~ 811 (1131)
|..+++.+..+... +|.................
T Consensus 185 ---------------------------------------------g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (337)
T 1pby_B 185 ---------------------------------------------VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRT 219 (337)
T ss_dssp ---------------------------------------------CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEE
T ss_pred ---------------------------------------------ccEEeeeccCCCceeeeeecccccccccccccccc
Confidence 22222111111000 0100000000000000111
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEE
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 891 (1131)
.+.+|++.+++.....+ ..+...+.+++|+|||++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+| ++++|+
T Consensus 220 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~ 295 (337)
T 1pby_B 220 GLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVW 295 (337)
T ss_dssp EEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEE
T ss_pred ceEEEeCCCCCceEeec-CCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEE
Confidence 23344555544331111 1245677889999999999988 799999999999988887643 4678999999 888888
Q ss_pred EEeCCCcEEEEEeecceeEEeeccccc
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
+++.++.|++||+.+++.+..+..+.+
T Consensus 296 ~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 296 LGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 889999999999999988888765543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=195.94 Aligned_cols=255 Identities=10% Similarity=0.068 Sum_probs=188.2
Q ss_pred CCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCC-Ccccccccceeecccccccceec
Q 001178 324 VPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGL-RERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
.++.+.+|.... .+......|...|.+++|+|||++ |++++ ++.|++||+.+ ++...
T Consensus 20 ~~~~i~~~d~~~--~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~------------------ 77 (297)
T 2ojh_A 20 MRSSIEIFNIRT--RKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK------------------ 77 (297)
T ss_dssp CCEEEEEEETTT--TEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE------------------
T ss_pred cceeEEEEeCCC--CceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE------------------
Confidence 344566676554 344455678999999999999995 66665 78999999998 76543
Q ss_pred eeccCC-CCCEEEEEEcCCCCEEEEEe--CCCeEEEEEec--CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC
Q 001178 403 AIVKDS-SISVSRVAWSPDGNFIGVAF--TKHLIHLYTYQ--GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1131)
Q Consensus 403 ~~~~~h-~~~V~~~~~spdg~~las~~--~d~~i~vwd~~--~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d 477 (1131)
+..+| ...|.+++|+|||++|++++ .++.+.||.+. ++. . ..+..+ ..+..++|+||++. ++++++.|
T Consensus 78 -~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~-~~~~~~~~spdg~~-l~~~~~~~ 150 (297)
T 2ojh_A 78 -VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-P---RLMTKN-LPSYWHGWSPDGKS-FTYCGIRD 150 (297)
T ss_dssp -CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-C---EECCSS-SSEEEEEECTTSSE-EEEEEEET
T ss_pred -eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-e---EEeecC-CCccceEECCCCCE-EEEEECCC
Confidence 23344 47789999999999999998 44556666654 433 2 123333 34899999999994 34478889
Q ss_pred CcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC-CCceeEEecCCCceEEEEEEccCC
Q 001178 478 KLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRVDYDAPGLWCTTMLYSADG 553 (1131)
Q Consensus 478 ~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g 553 (1131)
+.++||+ ..+.....+..|...+.+++|++ +++.++.++ .++.+++|+++ .......+..+...+..+.|+|+|
T Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 228 (297)
T 2ojh_A 151 QVFDIYSMDIDSGVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG 228 (297)
T ss_dssp TEEEEEEEETTTCCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS
T ss_pred CceEEEEEECCCCcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC
Confidence 9999999 55666677888888999999965 556666655 69999999987 445556666677789999999999
Q ss_pred CEEEEEeecCC-------CCceEEEEeCCCCeeeEEE--ecccCCceEEEEEeCCCCEEEEEEcCC
Q 001178 554 SRLFSCGTSKE-------GDSHLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 554 ~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
++|++++.... ....|++||+.+++..... .++. ..+..++|+|++++|++++.+.
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ-GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST-TTSCSCCBCTTSSEEEEEEECC
T ss_pred CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC-cccccceECCCCCEEEEEEecc
Confidence 99998875221 2367999999888664433 3433 3688899999999998887654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=217.41 Aligned_cols=273 Identities=11% Similarity=0.037 Sum_probs=193.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcC-CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCG-DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+..+|++++|||||++ ||.++. ||+++||++.+++... +...+...|.+++|||| +.+
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~-------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK-------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE-------------------CCSSCCSEECEECTTCS-EEE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe-------------------eecccccccccccCCCC-eEE
Confidence 3457999999999996 666555 9999999987665432 12233468999999999 777
Q ss_pred EEEeC---CCeEEEEEecC--CCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 425 GVAFT---KHLIHLYTYQG--SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 425 as~~~---d~~i~vwd~~~--~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++++. +....+|.+.. ..... .+..+ ..+...+|+|||+.+++++++.|+.. +|| .+++. ..+..+..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~-~~l~~~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGL-RELARLPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEE-EEEEEESS
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcE-EEeecCCC
Confidence 77765 45667776654 22111 22222 23457799999987566666666554 999 55544 44433333
Q ss_pred CeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
.+++|+ +||+.|++++.+ +.|++||+++++.. .+..+...+..++|+|||+.|++... ++...|++||+
T Consensus 153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 667775 567899988877 78999999877654 56677778999999999999995443 23348999999
Q ss_pred CCCeeeEEEecccCCceEEEE--------EeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 575 SEGALKRTYIGFRKKSAGVVQ--------FDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.+++.. .+.++.. .+..+. |+|||..+++++.++.+++|++ ++.... .. ..+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~--~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQ--GNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CS--SEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CC--CceEEEEec-CCEE
Confidence 988877 5554432 455555 9999988889999999999999 665441 11 357899999 9999
Q ss_pred EEEEECCCc---EEEEecC
Q 001178 647 LVVTTADQG---IKILANA 662 (1131)
Q Consensus 647 l~~~~~dg~---i~iw~~~ 662 (1131)
+++++.+.. +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 888877644 5556543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=192.22 Aligned_cols=249 Identities=12% Similarity=0.175 Sum_probs=167.9
Q ss_pred CCCeeEEEecCCCCEEEEEe---CCeEEEEECCCce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~ 906 (1131)
...+..++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++..
T Consensus 39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~ 117 (347)
T 3hfq_A 39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAA 117 (347)
T ss_dssp CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECT
T ss_pred cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCC
Confidence 45567899999999444443 3789999998776 3444455677889999999 888777777 789999999962
Q ss_pred -c--eeEEeecc---------cccCeeEEEEccCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCCCCCceEEEE
Q 001178 907 -D--EVKTKLKG---------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGETRVQF 973 (1131)
Q Consensus 907 -~--~~~~~~~~---------h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~~ 973 (1131)
+ +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ .....++|
T Consensus 118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g---~~p~~~~~ 194 (347)
T 3hfq_A 118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG---FGPRHLVF 194 (347)
T ss_dssp TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT---CCEEEEEE
T ss_pred CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC---CCCceEEE
Confidence 2 33333321 12348899999999977777778999999998 443322222222221 45678999
Q ss_pred cCCCcEEEEE--eCCeEEEEeCCC--ccc--ceeeecCCC---CCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCC-C-
Q 001178 974 HSDQVRLLVN--HETQLAIYDGSK--MEC--IRQWVPQDV---LSSPISSAAYSCNSQLIYAT-FTDGSIGVFDADS-L- 1041 (1131)
Q Consensus 974 s~d~~~l~~~--~d~~i~vwd~~~--~~~--~~~~~~~~~---~~~~v~~i~~s~dg~~l~s~-~~dg~i~vwd~~~-~- 1041 (1131)
+|||+++++. .++.+++|++.. ++. +..+..... ....+..++|+|||++|+++ ..++.|.+|++.. +
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 9999977775 378899999874 442 222222110 01458899999999988554 4689999999973 2
Q ss_pred -ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEec-CCcEEEEecCCCcc
Q 001178 1042 -RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLT-DGSVKVIEPSETER 1098 (1131)
Q Consensus 1042 -~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~-Dg~v~iW~~~~~~~ 1098 (1131)
+.+..+..+ . ..+..++|+| ++++|++++. ++.|.+|++....+
T Consensus 275 ~~~~~~~~~~----------~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 275 LTLIQQISTE----------G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp EEEEEEEECS----------S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEeEEEecC----------C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 333333211 1 1234689999 5667766665 58999997754443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=222.90 Aligned_cols=378 Identities=11% Similarity=0.038 Sum_probs=239.7
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC--CceEEEEEeCCCCEEEEEEc---------CCcEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK--KSAGVVQFDTTRNRILAAGE---------DNQIKF 614 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~---------dg~i~i 614 (1131)
.+.|+|||+++++. . ++.|++||..+++....+..+.. ..+..++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999655543 2 78999999999988776665432 13788999999999998876 789999
Q ss_pred EEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCcccee
Q 001178 615 WDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694 (1131)
Q Consensus 615 wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1131)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++........++..
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------ 152 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------ 152 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------------------
Confidence 999998763111111 2588999999999999886 789999998766211000000000
Q ss_pred cccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEE
Q 001178 695 TITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLL 774 (1131)
Q Consensus 695 ~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 774 (1131)
.++.|.. -|-... ........++
T Consensus 153 ------------------------------------~v~~g~~-----~~v~~e----------------e~~~~~~~~~ 175 (719)
T 1z68_A 153 ------------------------------------KIFNGIP-----DWVYEE----------------EMLATKYALW 175 (719)
T ss_dssp ------------------------------------TEEESSC-----CHHHHH----------------HTTCSSCCEE
T ss_pred ------------------------------------CeEcccc-----cceeee----------------ecccCcccEE
Confidence 0000000 000000 0012235799
Q ss_pred eecCCceEEEeeec-ceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeC
Q 001178 775 YTNSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853 (1131)
Q Consensus 775 ~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~d 853 (1131)
|||||+.|++++.| +.+.+|.+.... ..+...+..+.+...|.. ...
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~yp~~g~~---~~~ 223 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYG-----------------------------DEQYPRTINIPYPKAGAK---NPV 223 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECC-----------------------------SSSSCEEEEEECCBTTSC---CCE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccC-----------------------------CCCCccceeecCCCCCCC---CCe
Confidence 99999999998865 455555432210 012233455566555431 113
Q ss_pred CeEEEEECCCceeE---E-----EEeCCCCCeeEEEEeCCCCcEEEEEeCCC----cEEEEE----eecceeEEee----
Q 001178 854 GKVSLFNMMNFKVM---T-----TFMSPPPASTFLAFHPQDNNIIAIGMEDS----TIQIYN----VRVDEVKTKL---- 913 (1131)
Q Consensus 854 g~i~vwd~~~~~~~---~-----~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~I~iwd----~~~~~~~~~~---- 913 (1131)
..|++||+.+++.. . .+..|...+..++||| |++++++....+ .|++|| ..++++...+
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 47999999988753 1 1235677899999999 688887754332 488899 7778776666
Q ss_pred cccccCee-----EEEEccCCCEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 914 KGHQKHIT-----GLAFSTNLNILVS--SGSDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 914 ~~h~~~V~-----~l~~s~dg~~l~s--~~~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
.+|.+.+. .++|+|||+.|+. ...+| .|.+|++.+++.. ....+ ...+..+.++ +++.++...
T Consensus 303 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-----~lt~~--~~~v~~~~~~-d~~~i~~~~ 374 (719)
T 1z68_A 303 ESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAI-----QITSG--KWEAINIFRV-TQDSLFYSS 374 (719)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCE-----ECSCS--SSCEEEEEEE-CSSEEEEEE
T ss_pred ccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceE-----ecccC--ceEEEEEEEE-eCCEEEEEE
Confidence 47777777 8999999996554 44555 5777777665421 11111 1346677777 777777643
Q ss_pred -C-----CeEEEEeCCC--ccc-ceeeec-CCCCCCCeEEEEEccCCCEEEEEe-cC--CcEEEEECCCCceeeEec
Q 001178 985 -E-----TQLAIYDGSK--MEC-IRQWVP-QDVLSSPISSAAYSCNSQLIYATF-TD--GSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 -d-----~~i~vwd~~~--~~~-~~~~~~-~~~~~~~v~~i~~s~dg~~l~s~~-~d--g~i~vwd~~~~~~~~~~~ 1048 (1131)
+ +..++|.+.. +.. ...+.. ...+...+..+.|||||++++... .+ ..+.+||+.+++....+.
T Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 375 NEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 3 6677887653 321 222221 111256788999999999777543 22 468999998887655444
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=222.91 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=190.2
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCC---CEEEEEEcCCCCEEEEEe
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSI---SVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~las~~ 428 (1131)
+++|+|||+ +++++ .|++|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999995 56654 59999999999987653 2223322 488999999999999987
Q ss_pred C---------CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCc
Q 001178 429 T---------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHE 497 (1131)
Q Consensus 429 ~---------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~ 497 (1131)
. ++.|++||+.+++.+.. ..+ ...+.+++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRG-NEL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCS-SCC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccc-eec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 78999999999865210 112 25689999999999 566664 78999999 555544322 2333
Q ss_pred cCe-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEEE
Q 001178 498 APV-----------------YSVCPHQKENIHFIFSTAVDG----------------------------------KIKAW 526 (1131)
Q Consensus 498 ~~v-----------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~~w 526 (1131)
..| .+++|+ +||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 322 367775 5678999887652 78899
Q ss_pred eCCCCcee--EE------ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEe----CCCCeeeEEE----ecccCCc
Q 001178 527 LYDNVGSR--VD------YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN----ESEGALKRTY----IGFRKKS 590 (1131)
Q Consensus 527 d~~~~~~~--~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 590 (1131)
|+.++... .. +..+...+..++|+||++.+++.....+....|++|| ..+++....+ .++ ...
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGW 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSC
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-Cce
Confidence 99887642 12 2346678999999999877766543333346799999 8887765444 233 324
Q ss_pred eE-----EEEEeCCCCEEEE--EEcCC--cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-----CcE
Q 001178 591 AG-----VVQFDTTRNRILA--AGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-----QGI 656 (1131)
Q Consensus 591 v~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-----g~i 656 (1131)
+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999986554 33455 577778777663 333322 2246677777 77777776655 778
Q ss_pred EEEecCC
Q 001178 657 KILANAD 663 (1131)
Q Consensus 657 ~iw~~~~ 663 (1131)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=194.37 Aligned_cols=220 Identities=12% Similarity=0.068 Sum_probs=158.6
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE-
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG- 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la- 425 (1131)
...++.+++++++. ++++|+.++ |+||+........... .+... ...........|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPNK-IVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTTC-EEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCccc-ccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 588888787 8998864321100000 00000 00000111224677899999999999999
Q ss_pred ---EEeCCCeEEEEEecCC--------CccceeeeeecCcCCeeEEEEecC-CCceEEEEEcCCCcEEEEe-CCCceeEE
Q 001178 426 ---VAFTKHLIHLYTYQGS--------NDLCQSLEIDAHVGGVNDLAFSYP-NKQLCIVTCGDDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 ---s~~~d~~i~vwd~~~~--------~~~~~~~~~~~h~~~V~~l~~s~d-~~~~~l~s~s~d~~i~iwd-~~~~~~~~ 492 (1131)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999765 222234456789999999999998 55 899999999999999 66766667
Q ss_pred ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC-------CceEEEEEEccCCCEEEEEeecC--
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-------GLWCTTMLYSADGSRLFSCGTSK-- 563 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~~~~~~~-- 563 (1131)
..+|...|.+++|++ ++++|++|+.||.|++||.+ +.....+..+ ...|.++.|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999975 46899999999999999998 4444433332 23799999999998887665421
Q ss_pred -CCCceEEEEeCCCC
Q 001178 564 -EGDSHLVEWNESEG 577 (1131)
Q Consensus 564 -~~~~~i~iwd~~~~ 577 (1131)
.....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234899998754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-18 Score=208.77 Aligned_cols=381 Identities=9% Similarity=0.017 Sum_probs=240.9
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc--e--EEEEEeCCCCEEEEEEcC---------C
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS--A--GVVQFDTTRNRILAAGED---------N 610 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--v--~~~~~s~~~~~l~~~~~d---------g 610 (1131)
..++.|+|||+++++. ++.|++||..+++....+.++.... + ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999888874 6799999999999887777765322 2 337899999999998876 5
Q ss_pred cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCc
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1131)
.+++||+.+++... +. .+...+..++|||||+.||.+. ++.|++|+..++........++...
T Consensus 93 ~~~~~d~~~~~~~~-l~--~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EE--RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SS--CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cc--cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999988653 22 2233689999999999998884 6899999987762110000000000
Q ss_pred cceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccce
Q 001178 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1131)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1131)
++.+ +.-|-..+ +.....
T Consensus 156 -----------------------------------------~~~g-----~~~~v~~e----------------e~~~~~ 173 (740)
T 4a5s_A 156 -----------------------------------------IYNG-----ITDWVYEE----------------EVFSAY 173 (740)
T ss_dssp -----------------------------------------EEES-----BCCHHHHH----------------HTSSSS
T ss_pred -----------------------------------------eecC-----cccccccc----------------hhcCCC
Confidence 0000 00000000 001223
Q ss_pred EEEEeecCCceEEEeeecc-eeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEE
Q 001178 771 ARLLYTNSGIGILALWSNG-VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVM 849 (1131)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la 849 (1131)
..+.|||||+.|+....|. .+.+|++....... .+...+..+.+.+.|...
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~---------------------------~~~~~~~~~~yp~~G~~~- 225 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES---------------------------LQYPKTVRVPYPKAGAVN- 225 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT---------------------------CSSCEEEEEECCBTTSCC-
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCC---------------------------CCCCcceeecCCCCcCcC-
Confidence 4689999999999887654 47777754211100 133455667777776431
Q ss_pred EEeCCeEEEEECCC---ce--eEEEEe------CCCCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecce----eE
Q 001178 850 SAGGGKVSLFNMMN---FK--VMTTFM------SPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDE----VK 910 (1131)
Q Consensus 850 ~~~dg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~----~~ 910 (1131)
...+|++||+.+ ++ ....+. ++...+..++|+| |+++++..... ..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 123699999998 73 233343 2667799999999 78876665432 369999999887 32
Q ss_pred E--ee--cccccCee-----EEEEccCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 911 T--KL--KGHQKHIT-----GLAFSTNLNILV-SSGS-D--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 911 ~--~~--~~h~~~V~-----~l~~s~dg~~l~-s~~~-D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
. .+ .+|.+.|. .++|+|||+.|+ ..+. + ..|++||+.+++.. .+..+. ..+..+. .+|+
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~ 374 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTS 374 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECS
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeC
Confidence 2 22 45666554 789999999877 6654 3 46888898875532 222221 3344443 2446
Q ss_pred cEEEEEeCC--------eEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceee
Q 001178 978 VRLLVNHET--------QLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRC 1045 (1131)
Q Consensus 978 ~~l~~~~d~--------~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~ 1045 (1131)
+.++....+ .|+..++..+.....+... ......+..+.|||||++++..... ..+.+++..+++...
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 666654322 5666666655433233211 1113578899999999987766533 468888988776655
Q ss_pred Eec
Q 001178 1046 RIA 1048 (1131)
Q Consensus 1046 ~~~ 1048 (1131)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-16 Score=178.51 Aligned_cols=178 Identities=11% Similarity=0.098 Sum_probs=122.5
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCce-------e------EEEEeCCCCCeeEEEEeCCCCcEEEEEe-CC
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFK-------V------MTTFMSPPPASTFLAFHPQDNNIIAIGM-ED 896 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~-------~------~~~~~~~~~~i~~l~~s~~~~~~la~g~-~d 896 (1131)
...+.+++|+|||+++++++ ++.|.+|++.... . ......+...+..++|+| +++++++++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCC
Confidence 34577899999999777665 6889999877533 1 111223455688999999 788776666 68
Q ss_pred CcEEEEEeeccee--EEee---cccccCeeEEEEccCCCEEEEEeC--CCcEEEEEcC--CCceeeeeeeecCCCCCCCC
Q 001178 897 STIQIYNVRVDEV--KTKL---KGHQKHITGLAFSTNLNILVSSGS--DAQLIFWNTD--TWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 897 g~I~iwd~~~~~~--~~~~---~~h~~~V~~l~~s~dg~~l~s~~~--Dg~v~lwd~~--~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+.|.+|++.+++. +..+ ..+.....+++|+|||++|+++.. ++.|.+|+++ +++......... ...
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-----g~~ 307 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-----GIH 307 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-----SSC
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-----CCC
Confidence 9999999997754 2222 334455789999999999876665 4899999996 333222222211 146
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEe--CCCcccceeeecCCCCCCCeEEEEEc
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYD--GSKMECIRQWVPQDVLSSPISSAAYS 1018 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd--~~~~~~~~~~~~~~~~~~~v~~i~~s 1018 (1131)
+..++|+|||++|+++. ++.+.+|+ ..+++........ +...+.|++|.
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~--~~~~p~~v~~~ 360 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI--KVDKPVCLKFV 360 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE--ECSSEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee--eCCCCeEEEEc
Confidence 77899999999888864 68899964 4566654432111 14578898886
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=205.57 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=175.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcC---CCcEEEE
Q 001178 409 SISVSRVAWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---DKLIRVW 483 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~---d~~i~iw 483 (1131)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 457999999999999999887 999999999776532 345555 68999999999 5 6776654 5556776
Q ss_pred e--C--CCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 484 D--L--SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 484 d--~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
. . .+... .+..+. .+...+|++++++..+++++.++. .+||+++++.......+. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 5 55554 443322 344567777776555655555554 499998876555443333 789999999999988
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCC--cEEEEEcCCCeEEEEEeccCCCCCcce
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDN--QIKFWDMDNVNMLTSTEAEGGLPSLPR 637 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~ 637 (1131)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 763333378999999888765 5555443 688999999999999888888 8999999998877 44333 235666
Q ss_pred EE--------EcCCCCEEEEEECCCcEEEEec
Q 001178 638 LR--------FNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 638 v~--------~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999997
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-17 Score=183.06 Aligned_cols=245 Identities=10% Similarity=0.102 Sum_probs=169.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCCcEEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFT---KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRV 482 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~i 482 (1131)
.+...+..++|+|||+ |++++. ++.|.+|++.+++ ......+..+...+..++|+|||+ +|++++ .++.|.+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEV 112 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEE
Confidence 3446678899999999 555543 6899999998765 233334456778899999999999 566555 7899999
Q ss_pred EeC--CCc--eeEEecC---------CccCeEEEeecccCCccEEEEEecCCeEEEEeCCC-CceeE--EecC-CCceEE
Q 001178 483 WDL--SGR--KLFQFEG---------HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDN-VGSRV--DYDA-PGLWCT 545 (1131)
Q Consensus 483 wd~--~~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~--~~~~-~~~~v~ 545 (1131)
||. .+. .+..+.. +...+.+++|++ +++++++...++.|++|++.. +.... .+.. ....+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 993 232 2233321 122477888865 456677777789999999983 32221 1222 333678
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCC--Cee--eEEEecccC-----CceEEEEEeCCCCEEEE-EEcCCcEEEE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESE--GAL--KRTYIGFRK-----KSAGVVQFDTTRNRILA-AGEDNQIKFW 615 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~~~~~-----~~v~~~~~s~~~~~l~~-~~~dg~i~iw 615 (1131)
.++|+|||+++++++. .++.|.+|++.. ++. +..+..... ..+..++|+|+|++|++ ...++.|.+|
T Consensus 191 ~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVF 267 (347)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEE
T ss_pred eEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEE
Confidence 8999999998877653 367899998763 553 223332221 24778999999998754 5568999999
Q ss_pred EcCC---CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC-CcEEEEecC
Q 001178 616 DMDN---VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD-QGIKILANA 662 (1131)
Q Consensus 616 d~~~---~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d-g~i~iw~~~ 662 (1131)
++.. .+.+..+..++. .+..++|+|+|++|++++.+ +.+.+|++.
T Consensus 268 ~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 268 AVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 9973 244444544332 57899999999998888764 899999653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-17 Score=188.36 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=192.2
Q ss_pred cCCCcEEE-----EEEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 345 HQGSSVVS-----MDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 345 ~h~~~V~~-----~~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.|...+.. .+|||||+++++++..+| .|.+||+.+++... +..++...+..++|
T Consensus 28 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 28 PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTFGGFL 88 (388)
T ss_dssp CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSSSCEE
T ss_pred CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCccceEE
Confidence 35555665 899999997555544467 48888998887653 24456556657789
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEE--EecCCCceEEEE----------------------
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA--FSYPNKQLCIVT---------------------- 473 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~--~s~d~~~~~l~s---------------------- 473 (1131)
||||+.|+.++.++.|.+||+.+++... ....+...+.... +++|++ +++.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T 3pe7_A 89 SPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFHEFYF 163 (388)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhhhhhc
Confidence 9999999999999999999999986432 2334455454444 489998 4543
Q ss_pred EcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCCC--ceEE
Q 001178 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAPG--LWCT 545 (1131)
Q Consensus 474 ~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~--~~v~ 545 (1131)
.+.+..|.+||..+.....+..+...+..++|+|. +++.|+..+.+ ..|.++|.+..... .+..+. ..+.
T Consensus 164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~ 241 (388)
T 3pe7_A 164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCT 241 (388)
T ss_dssp GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEE
T ss_pred cCCcceEEEEECCCCceEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccc
Confidence 23457899999444445566667778888888651 55777766543 37777887654433 333333 3578
Q ss_pred EEEEccCCCEEEEEeecCC-CCceEEEEeCCCCeeeEE--EecccC--CceEEEEEeCCCCEEEEE---------EcCCc
Q 001178 546 TMLYSADGSRLFSCGTSKE-GDSHLVEWNESEGALKRT--YIGFRK--KSAGVVQFDTTRNRILAA---------GEDNQ 611 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~-~~~~i~iwd~~~~~~~~~--~~~~~~--~~v~~~~~s~~~~~l~~~---------~~dg~ 611 (1131)
.+.|+|||+.|+..+.... ....|++||+.+++.... +.++.. .......|+|+|+.|+.. ..+..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 8999999998877664221 123599999998875332 222100 001123699999877754 45678
Q ss_pred EEEEEcCCCeEEEEEeccCCCC--------CcceEEEcCCCCEEEEEEC-CCcEEEEecC
Q 001178 612 IKFWDMDNVNMLTSTEAEGGLP--------SLPRLRFNKEGNLLVVTTA-DQGIKILANA 662 (1131)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~--------~i~~v~~sp~~~~l~~~~~-dg~i~iw~~~ 662 (1131)
|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 322 LYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp EEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred EEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 9999999887644333222110 3678899999998887664 6777777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=186.65 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=183.6
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcE-EEEEeCCCcEEEEEeecceeEEeec
Q 001178 838 CVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNI-IAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 838 ~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~-la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.++++++++++++++ +++|.+||+.+++.+..+..+. ..+..++|+| ++++ ++++..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 6664 5566678999999999998877765
Q ss_pred ccc------cCeeEEEEccCCCEEEEEeCC------------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC
Q 001178 915 GHQ------KHITGLAFSTNLNILVSSGSD------------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD 976 (1131)
Q Consensus 915 ~h~------~~V~~l~~s~dg~~l~s~~~D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 976 (1131)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++........ . ....+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~--~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--P--MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--E--CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--c--CCCcccceeECCC
Confidence 332 337899999999999998865 89999999885532221111 1 1135788999999
Q ss_pred CcEEEEEeCCeEEEEeCCCcccceeeecCCC-------------------------------------------------
Q 001178 977 QVRLLVNHETQLAIYDGSKMECIRQWVPQDV------------------------------------------------- 1007 (1131)
Q Consensus 977 ~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~------------------------------------------------- 1007 (1131)
|+ ++++ ++.|++||+.+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5554 44599999998887665543210
Q ss_pred ----------------CCCCeEEEEEcc-CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEE
Q 001178 1008 ----------------LSSPISSAAYSC-NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVT 1070 (1131)
Q Consensus 1008 ----------------~~~~v~~i~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~ 1070 (1131)
+...+.+++|+| ||++|+++ ++.|.+||+.+++.+..+.... .+..++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~ 301 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-------------TYYCVA 301 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-------------CCCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-------------CccceE
Confidence 012456788889 99999988 8899999999998877765321 123588
Q ss_pred EcCCCCCeEEEEecCCcEEEEecCCCccccccccC
Q 001178 1071 SHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1071 ~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~~p 1105 (1131)
|+| ++.+|++++.++.|.+||+.+.+....+..|
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 999 5567777888999999999988766655555
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-17 Score=183.12 Aligned_cols=248 Identities=14% Similarity=0.164 Sum_probs=166.3
Q ss_pred CCCeeEEEecCCCCEEEEEeC-----CeEEEEECCC--cee--EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEE
Q 001178 833 EDVVPCVALSKNDSYVMSAGG-----GKVSLFNMMN--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYN 903 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~d-----g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd 903 (1131)
...+..++|+|||++|++++. +.|.+|++.. ++. +.....+......+++ . ++.++++...++.|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-d-g~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-N-GKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-C-SSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-C-CCEEEEEECCCCEEEEEE
Confidence 455677999999999998884 6899998865 443 3344445566777777 2 444444444788999999
Q ss_pred eecceeEEee------c--------ccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCce------eee----eeee
Q 001178 904 VRVDEVKTKL------K--------GHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEK------RKS----IAIQ 958 (1131)
Q Consensus 904 ~~~~~~~~~~------~--------~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~~------~~~----~~~~ 958 (1131)
+.....+..+ . .+...+.+++|+|||++|++++ .++.|.+|++..... ... ....
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 9754322211 1 1223458899999999766555 588999999886442 111 1112
Q ss_pred cCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEecC--Cc
Q 001178 959 LPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--GS 1032 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d--g~ 1032 (1131)
... ......++|+|||++++++. ++.|.+|++.+++. +..+.....+......++|+|||++|+++..+ +.
T Consensus 207 ~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 207 VAP---GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CCT---TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred cCC---CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 221 25678999999999887754 78999999987654 33333332234567899999999999877755 89
Q ss_pred EEEEECC--CCce--eeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecCCCccc
Q 001178 1033 IGVFDAD--SLRL--RCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPSETERK 1099 (1131)
Q Consensus 1033 i~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~~~~~~ 1099 (1131)
|.+|++. +++. +..+.. ...+..++|+| ++++|++++ .++.|.+|++....++
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~-------------g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT-------------GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC-------------SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEEcCCCCcEEEeeEecC-------------CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCc
Confidence 9999996 4542 222221 11234689999 567777776 6799999877654443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=184.99 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=184.9
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc-CCCCCEEEEEEcCCCCEEE-EEeC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK-DSSISVSRVAWSPDGNFIG-VAFT 429 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg~~la-s~~~ 429 (1131)
.++++++++ ++++++.+++|.+||+.+++.+.. +. +....+..++|+|||++++ ++..
T Consensus 4 g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 4 GPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKS-------------------CVMPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSSCCSSCEEEECTTSSEEEEEETT
T ss_pred cccccCCCE-EEEEeCCCCeEEEEECCCCcEEEE-------------------EecCCCCCCceeEECCCCCEEEEEeCC
Confidence 456788776 788999999999999999876542 11 2222577899999999665 4556
Q ss_pred CCeEEEEEecCCCccceeeeee-cC-----cCCeeEEEEecCCCceEEEEEcCC------------CcEEEEe-CCCce-
Q 001178 430 KHLIHLYTYQGSNDLCQSLEID-AH-----VGGVNDLAFSYPNKQLCIVTCGDD------------KLIRVWD-LSGRK- 489 (1131)
Q Consensus 430 d~~i~vwd~~~~~~~~~~~~~~-~h-----~~~V~~l~~s~d~~~~~l~s~s~d------------~~i~iwd-~~~~~- 489 (1131)
++.|.+||+.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+|| .+++.
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8999999999876543 222 22 23478999999999 56666654 8999999 55332
Q ss_pred --eEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------------------c---e
Q 001178 490 --LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------------------L---W 543 (1131)
Q Consensus 490 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------------------~---~ 543 (1131)
+..+. +...+.+++|++ +++ +++++ +.|.+||..+++....+.... . .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 23333 334577888855 556 55554 349999998877666554332 0 3
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
...+++++++........ ....+..++..+++....-.......+..++|+| ++++++++ ++.|++||+.+++.
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence 345666665532211110 0122333566555432211111333677899999 99999888 88999999999998
Q ss_pred EEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 623 LTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 623 ~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+..+.... .+.+++|+|++++|++++.++.|.+||..++
T Consensus 288 ~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 288 IKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 88776443 4689999999998988888999999999876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=180.33 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=170.1
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECC-CceeEEEEeC-CCCCeeEEEEeCCCCc--EEEEEe-------------CC
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMM-NFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGM-------------ED 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~~~~--~la~g~-------------~d 896 (1131)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988884599999997 7776544321 113366789999 777 455553 68
Q ss_pred CcEEEEEee-cceeEEeec----ccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCCCCCce
Q 001178 897 STIQIYNVR-VDEVKTKLK----GHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTD-TWEKRKSIAIQLPAGKLPVGET 969 (1131)
Q Consensus 897 g~I~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~ 969 (1131)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++........... +...+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 465544433 25567999999999998887654 6799999998 66543222222111 125688
Q ss_pred EEEEcCCCcEEEEEe--CCeEEEEeCC--Ccccce---eeecCC----CCCC------CeEEEE-EccCCCEEEEEecCC
Q 001178 970 RVQFHSDQVRLLVNH--ETQLAIYDGS--KMECIR---QWVPQD----VLSS------PISSAA-YSCNSQLIYATFTDG 1031 (1131)
Q Consensus 970 ~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~~~~---~~~~~~----~~~~------~v~~i~-~s~dg~~l~s~~~dg 1031 (1131)
.++|+|||++|+++. ++.+.+|+++ +++... .+.... .+.. .+..++ |+|||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988764 6789999765 455421 121111 1122 588999 999999998877433
Q ss_pred ------cEEEEECC-CCceeeE---ecCCccccCCCCCCCCccccEEEEEcCC--CCCeEEEEecC-CcEEEEecCCC
Q 001178 1032 ------SIGVFDAD-SLRLRCR---IAPSAYMSQASPNSSQTVFPLVVTSHPQ--EPNQLAVGLTD-GSVKVIEPSET 1096 (1131)
Q Consensus 1032 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~v~~~p~--~~~~l~s~~~D-g~v~iW~~~~~ 1096 (1131)
.|.+|++. ++++... +.... . .+..++|+|. ++++|++++.+ ++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~----------~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPT----------S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSS----------C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCC----------C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6664431 21111 0 1113678885 56788888864 89999999765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=7.9e-17 Score=199.67 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=89.4
Q ss_pred CeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeE-----EEeecccCCccEEEEEecC---------
Q 001178 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVY-----SVCPHQKENIHFIFSTAVD--------- 520 (1131)
Q Consensus 456 ~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~-----~~~~~~~~~~~~l~s~s~d--------- 520 (1131)
...+++|+|||+ +++++ |++|++|| .++++...+.+|..... .+.| ++||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEE--CTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEE--CCCCCEEEEEECCeeeEEEccc
Confidence 466899999998 77776 89999999 78887777777765432 2445 5677899988876
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
+.+.+||+.+++.. .+..+...+...+|||||+.||.+. ++.|++|+..+++..+
T Consensus 92 ~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-----~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 92 ASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-----NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp EEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-----TTEEEEESSTTSCCEE
T ss_pred eEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-----CCeEEEEECCCCceEE
Confidence 56679999987654 3455566799999999999999985 6789999998876543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-17 Score=183.21 Aligned_cols=253 Identities=10% Similarity=0.010 Sum_probs=171.5
Q ss_pred ccCCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC
Q 001178 405 VKDSSISVSR-----VAWSPDGNFIGVAFT-KH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD 476 (1131)
Q Consensus 405 ~~~h~~~V~~-----~~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~ 476 (1131)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 4456655655 889999999999987 66 48888988876432 2345555666789999999 7888888
Q ss_pred CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEE----------------------ecCCeEEEEeCCCCce
Q 001178 477 DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------------------AVDGKIKAWLYDNVGS 533 (1131)
Q Consensus 477 d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------s~dg~i~~wd~~~~~~ 533 (1131)
++.|++|| .+++....+..+...+....+..++++..++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 666666556556665555555446677777642 2447899999988754
Q ss_pred eEEecCCCceEEEEEEcc-CCCEEEEEeecCC--CCceEEEEeCCCCeeeEEEecccC-CceEEEEEeCCCCEEEEEEc-
Q 001178 534 RVDYDAPGLWCTTMLYSA-DGSRLFSCGTSKE--GDSHLVEWNESEGALKRTYIGFRK-KSAGVVQFDTTRNRILAAGE- 608 (1131)
Q Consensus 534 ~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~- 608 (1131)
... ..+...+..+.|+| ||+.|+.+..... ....|+++|...+... .+..+.. ..+...+|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYL 258 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecC
Confidence 443 34455689999999 9999988874221 1448899998765543 3333332 24677899999997765443
Q ss_pred CC----cEEEEEcCCCeEEEEEeccCCC---CCcceEEEcCCCCEEEEE---------ECCCcEEEEecCCC
Q 001178 609 DN----QIKFWDMDNVNMLTSTEAEGGL---PSLPRLRFNKEGNLLVVT---------TADQGIKILANADG 664 (1131)
Q Consensus 609 dg----~i~iwd~~~~~~~~~~~~~~~~---~~i~~v~~sp~~~~l~~~---------~~dg~i~iw~~~~~ 664 (1131)
++ .|++||+.+++........... .....+.|+|||+.|+.. ..+..|.+||+.++
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 259 KGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 22 3999999998754433222200 012345799999988754 44568999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-16 Score=174.83 Aligned_cols=249 Identities=8% Similarity=0.033 Sum_probs=170.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEec-CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-----------
Q 001178 408 SSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQ-GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG----------- 475 (1131)
Q Consensus 408 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s----------- 475 (1131)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 33467889999999999999888 99999997 665332 1122211 236679999999853355553
Q ss_pred --CCCcEEEEe-C-CCceeEEec----CCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCC-CCceeE--Eec--CCC
Q 001178 476 --DDKLIRVWD-L-SGRKLFQFE----GHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYD-NVGSRV--DYD--APG 541 (1131)
Q Consensus 476 --~d~~i~iwd-~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~--~~~--~~~ 541 (1131)
.++++.+|+ . +|+....+. .+...+.+++|+| +|++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 689999999 3 466554443 2456788998864 567777665 46899999998 554322 232 235
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCeeeE---EEecccC-----C-------ceEEEE-EeCCCCEE
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKR---TYIGFRK-----K-------SAGVVQ-FDTTRNRI 603 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~-----~-------~v~~~~-~s~~~~~l 603 (1131)
..+..++|+|||+++++++. .++.|.+|+.. +++... .+..... . .+..++ |+|+|++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 56899999999999988763 25688888654 565432 2322111 1 367899 99999988
Q ss_pred EEEEcC-C-----cEEEEEcC-CCeEEEEEe-ccCCCCCcceEEEcC---CCCEEEEEECC-CcEEEEecCCC
Q 001178 604 LAAGED-N-----QIKFWDMD-NVNMLTSTE-AEGGLPSLPRLRFNK---EGNLLVVTTAD-QGIKILANADG 664 (1131)
Q Consensus 604 ~~~~~d-g-----~i~iwd~~-~~~~~~~~~-~~~~~~~i~~v~~sp---~~~~l~~~~~d-g~i~iw~~~~~ 664 (1131)
+++..+ + .|.+|++. +++...... ..........++|+| +|++|++++.+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 566543211 111122467899999 89999998864 89999998654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-15 Score=169.44 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=207.4
Q ss_pred CccEEEEEe------cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCC
Q 001178 510 NIHFIFSTA------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEG 577 (1131)
Q Consensus 510 ~~~~l~s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~ 577 (1131)
++++++... .|+.|.+||..+++....+.....+ .++|+|||++++++... ++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555543 4789999999888777666655444 89999999999988631 112567999999999
Q ss_pred eeeEEEeccc-----CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEE-EeccCCCCCcceEEEcCCC-CEEE
Q 001178 578 ALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTS-TEAEGGLPSLPRLRFNKEG-NLLV 648 (1131)
Q Consensus 578 ~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~v~~sp~~-~~l~ 648 (1131)
+.+..+.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 8888776421 123556899999999999874 68999999999988877 54332 1235567765 6778
Q ss_pred EEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCC
Q 001178 649 VTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGI 728 (1131)
Q Consensus 649 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 728 (1131)
+.+.||.+.+|+.....+.... .+
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~--~~------------------------------------------------------ 191 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQ--SR------------------------------------------------------ 191 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEE--EE------------------------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeee--cc------------------------------------------------------
Confidence 8889999999987542111100 00
Q ss_pred CCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccc
Q 001178 729 EKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1131)
Q Consensus 729 ~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1131)
...+|+... .. ..+.+++++..++..+.++.+.++|+.......
T Consensus 192 -----------~~~~~~~~~-------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~----- 235 (361)
T 2oiz_A 192 -----------SKQMFSVKD-------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV----- 235 (361)
T ss_dssp -----------CCCCSCTTT-------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-----
T ss_pred -----------ccceEcCCC-------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee-----
Confidence 000011000 00 011224555556666666777777764321100
Q ss_pred eeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe------------CCeEEEEECCCceeEEEEeCCCCC
Q 001178 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG------------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
...|............ .......++|+||++.+.++. .++|.+||+.+++.+.++..+.
T Consensus 236 ----~~~~~~~~~~~~~~~~---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 236 ----DGPWSLLNDEDKAKNW---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp ----EEEEESCCHHHHHTTC---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred ----cccccccCcccccccc---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 0112211110000000 011122378999988877653 2479999999999999998876
Q ss_pred eeEEEEeCCCCcEEEEEeCCCcEEEEEeecc--eeEEeecccccCeeEEEEccCCC
Q 001178 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKTKLKGHQKHITGLAFSTNLN 930 (1131)
Q Consensus 877 i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~s~dg~ 930 (1131)
+.+++|+| ++++|++++. ++|.+||..++ +.+..+..+......++++|||+
T Consensus 307 p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 307 ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999 7888888877 99999999999 99988877777789999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-15 Score=171.24 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=156.2
Q ss_pred CCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ce
Q 001178 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DE 908 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~ 908 (1131)
.....++++|||++|++++ +++|.+||+.+++.+.+ +... ....+.+.|+++..+++.+.||.+.+|+... ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998876 46899999999998887 5532 2333667785557888899999999999865 55
Q ss_pred eEE------eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCC
Q 001178 909 VKT------KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSD 976 (1131)
Q Consensus 909 ~~~------~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d 976 (1131)
... .+..+..++ .+.+++++..++..+.++.|.++|+............... +........++|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 441 222223332 3445788888888888999999999765422111111100 000122234789999
Q ss_pred CcEEEEEe------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC--c
Q 001178 977 QVRLLVNH------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL--R 1042 (1131)
Q Consensus 977 ~~~l~~~~------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~--~ 1042 (1131)
+..+++.. .+.|.+||+.+++.+..+..+ . +.+++|+|||++|++++. +.|.+||..++ +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence 88887742 247999999999999988776 3 899999999999999886 99999999999 8
Q ss_pred eeeEecCCccccCCCCCCCCccccEEEEEcCC
Q 001178 1043 LRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ 1074 (1131)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~ 1074 (1131)
.+..+.... ..+..+.++|+
T Consensus 339 ~~~~i~~~G------------~~P~~~~~~p~ 358 (361)
T 2oiz_A 339 LLRTIEGAA------------EASLQVQFHPV 358 (361)
T ss_dssp EEEEETTSC------------SSEEEEEECCC
T ss_pred eeEEeccCC------------CCcEEEEecCC
Confidence 887764222 23446888884
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-16 Score=179.82 Aligned_cols=282 Identities=10% Similarity=-0.025 Sum_probs=182.2
Q ss_pred EEEEEEecCCCcEEEEEcCC--CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 350 VVSMDFHPFHHTLLVVGCGD--GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 350 V~~~~fspdg~~llasg~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
+.+++|||||++++++...+ ..|.+||+.+++... +..++......++|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 77889999999755555443 378888998876542 112222223347899999999999
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeE-------------------EEEecCCCceEEEEE-----cCCCcEEEE
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVND-------------------LAFSYPNKQLCIVTC-----GDDKLIRVW 483 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~-------------------l~~s~d~~~~~l~s~-----s~d~~i~iw 483 (1131)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999998876432 12223332222 356778774 3332 466789999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCceeEEecCC-CceEEEEEEccCCCE
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGSRVDYDAP-GLWCTTMLYSADGSR 555 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 555 (1131)
| .+++. ..+..+...+..+.|++. ++..|+..+.+ ..|.+|+++........... ...+..+.|+|||++
T Consensus 174 d~~~g~~-~~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGEL-EVIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcE-EeeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 44544 444456777888888652 34555555433 36888888655433222211 336888999999998
Q ss_pred EEEEeecCC-CCceEEEEeCCCCeeeEEEecccCCceEEEEEeC-CCCEEEEEE----------------cCCcEEEEEc
Q 001178 556 LFSCGTSKE-GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT-TRNRILAAG----------------EDNQIKFWDM 617 (1131)
Q Consensus 556 l~~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~ 617 (1131)
|+.++.... ..+.|++||+.+++....... . ... ..|+| +++++++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVM-P--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeC-C--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 887764211 124599999988876543322 1 233 88999 999888754 3478999999
Q ss_pred CCCeEEEEEeccCCC--------CCcceEEEcCCCCEEEEEEC-CCcEEEEec
Q 001178 618 DNVNMLTSTEAEGGL--------PSLPRLRFNKEGNLLVVTTA-DQGIKILAN 661 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~--------~~i~~v~~sp~~~~l~~~~~-dg~i~iw~~ 661 (1131)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754332221100 01467899999998887765 555555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-16 Score=178.22 Aligned_cols=179 Identities=8% Similarity=0.051 Sum_probs=116.4
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeEEeeccc-ccCeeEEEE
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKTKLKGH-QKHITGLAF 925 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~h-~~~V~~l~~ 925 (1131)
+..|.+||+.+++..... .+...+..+.|+|+++..|+..+.+ ..|.+|++.+++........ ...+..++|
T Consensus 167 ~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred cceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 356888888877665544 3456789999999445656555543 35888887765543333321 235888999
Q ss_pred ccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe---------------
Q 001178 926 STNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--------------- 984 (1131)
Q Consensus 926 s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--------------- 984 (1131)
+|||++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||++++++.
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-----SEE-EEEECSSSSEEEEEECCC----------CC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-----CCC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 9999988877654 459999998876432211 11 122 89999 999888642
Q ss_pred --CCeEEEEeCCCcccceeeecCCCC--------CCCeEEEEEccCCCEEEEEec-CCcEEEE--ECCCCc
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVL--------SSPISSAAYSCNSQLIYATFT-DGSIGVF--DADSLR 1042 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~--------~~~v~~i~~s~dg~~l~s~~~-dg~i~vw--d~~~~~ 1042 (1131)
+..|++||+.+++.. .+..+... ...+..++|+|||++|+.++. ++...+| ++.++.
T Consensus 317 ~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred CCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 368999999887753 33333100 002567799999998888774 4554454 555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-13 Score=159.78 Aligned_cols=330 Identities=13% Similarity=0.073 Sum_probs=227.4
Q ss_pred CCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC--CCeeeEEEecc
Q 001178 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES--EGALKRTYIGF 586 (1131)
Q Consensus 509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~~ 586 (1131)
+.+.++++...++.|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+..+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEecC
Confidence 34456777788999999999998877766543 34678999999999998874 7899999995 78888777642
Q ss_pred cCCceEEEEEe----CCCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccCC---------CCCcceEEEcCCCCEEEEE-E
Q 001178 587 RKKSAGVVQFD----TTRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEGG---------LPSLPRLRFNKEGNLLVVT-T 651 (1131)
Q Consensus 587 ~~~~v~~~~~s----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~---------~~~i~~v~~sp~~~~l~~~-~ 651 (1131)
. ....++|+ |+|+++++++. ++.+.++|..+.+.+..+...+. ...+..+..++++..+++. .
T Consensus 240 ~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 S--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp S--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred C--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 2 45679999 69998888664 69999999999999888764321 1134556666655444333 3
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
.+|.|.++|..+..
T Consensus 318 ~~g~v~~vd~~~~~------------------------------------------------------------------ 331 (567)
T 1qks_A 318 ETGKILLVDYTDLN------------------------------------------------------------------ 331 (567)
T ss_dssp TTTEEEEEETTCSS------------------------------------------------------------------
T ss_pred CCCeEEEEecCCCc------------------------------------------------------------------
Confidence 34566666543220
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
.+.+..+
T Consensus 332 ----------------------------------------------------------~~~v~~i--------------- 338 (567)
T 1qks_A 332 ----------------------------------------------------------NLKTTEI--------------- 338 (567)
T ss_dssp ----------------------------------------------------------EEEEEEE---------------
T ss_pred ----------------------------------------------------------cceeeee---------------
Confidence 0000000
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeC
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHP 884 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~ 884 (1131)
........+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-.. -++|
T Consensus 339 -------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p 398 (567)
T 1qks_A 339 -------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHP 398 (567)
T ss_dssp -------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEET
T ss_pred -------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECC
Confidence 0123355788999999988876 68999999999998877764 2221112 2578
Q ss_pred CCCcEEEEEe-CCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEEEeC-------CCcEEEEEcCCC
Q 001178 885 QDNNIIAIGM-EDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVSSGS-------DAQLIFWNTDTW 949 (1131)
Q Consensus 885 ~~~~~la~g~-~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-------Dg~v~lwd~~~~ 949 (1131)
+++.+.+++. .+++|.++|..+ .+.+..+......-..+.++|++++|.+... ..+|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4466666554 468999999987 6677777765444455789999999888663 358999999876
Q ss_pred ce---eee-eeeecC----CCCCCCCceEEEEcCCCcEEEEE------eCCeEEEEeCCCcccceeeec
Q 001178 950 EK---RKS-IAIQLP----AGKLPVGETRVQFHSDQVRLLVN------HETQLAIYDGSKMECIRQWVP 1004 (1131)
Q Consensus 950 ~~---~~~-~~~~~~----~~~~~~~v~~v~~s~d~~~l~~~------~d~~i~vwd~~~~~~~~~~~~ 1004 (1131)
+. ... ..+... .......+..+.|+|+|+.+.++ .++.|.|+|..+++.+..+..
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 11 111 111110 01112568899999999988875 268999999999998887764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=158.47 Aligned_cols=247 Identities=15% Similarity=0.114 Sum_probs=183.0
Q ss_pred CCcEEEEEEecCCCcEEEEEcCC------------------------CeEEEEECCCCcccccccceeecccccccceec
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGD------------------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
-..|.+++|+|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 35799999999997 67777766 4789999888776431
Q ss_pred eeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCC-ccceeeee---------ecCcCCeeEEEEec-CCCceEE
Q 001178 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN-DLCQSLEI---------DAHVGGVNDLAFSY-PNKQLCI 471 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~---------~~h~~~V~~l~~s~-d~~~~~l 471 (1131)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 122455678999999999999888889999999986542 222 22 24455789999999 677 77
Q ss_pred EEEc-CCCcEEEEeCCCceeEEecCC----------ccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--
Q 001178 472 VTCG-DDKLIRVWDLSGRKLFQFEGH----------EAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-- 538 (1131)
Q Consensus 472 ~s~s-~d~~i~iwd~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-- 538 (1131)
++.+ .++.|++||.+|+.+..+... -.....+++.+. .+.++++...+++|++|+.++++....+.
T Consensus 159 v~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 7776 689999999888888777432 234788988643 25778888889999999998777666653
Q ss_pred CCCceEEEEEEccCCCEEEEEee---cCCCCceEEEEeCCCCeeeEEEec--ccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGT---SKEGDSHLVEWNESEGALKRTYIG--FRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
.....+..++++| +..++..+. .......|++|+..+++.+..+.. ........++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 443333321 012255899999999999888741 1223578899999997777788899999
Q ss_pred EEEcCC
Q 001178 614 FWDMDN 619 (1131)
Q Consensus 614 iwd~~~ 619 (1131)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.8e-15 Score=179.27 Aligned_cols=206 Identities=9% Similarity=-0.010 Sum_probs=144.8
Q ss_pred eeecCcCCeeEEEEecCCCceEEEEE--cCCCcEEEEe-CCCceeEEecCCccCeE---------EEeecccCCccE-EE
Q 001178 449 EIDAHVGGVNDLAFSYPNKQLCIVTC--GDDKLIRVWD-LSGRKLFQFEGHEAPVY---------SVCPHQKENIHF-IF 515 (1131)
Q Consensus 449 ~~~~h~~~V~~l~~s~d~~~~~l~s~--s~d~~i~iwd-~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 515 (1131)
.+.+|...+..++|++++- ++++. +.++...||. ..+.....+..|...+. ...|..++|++. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567889999999997754 67777 6788999999 66677777877776666 555653466777 66
Q ss_pred EEec-CCeEEEEeCC--CCceeEEecC-----CCceEEEEEEccCCCEEEEEeecC------CCCceEEEEeCCC-----
Q 001178 516 STAV-DGKIKAWLYD--NVGSRVDYDA-----PGLWCTTMLYSADGSRLFSCGTSK------EGDSHLVEWNESE----- 576 (1131)
Q Consensus 516 s~s~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~------~~~~~i~iwd~~~----- 576 (1131)
.++. +..|.+|++. .......+.. +...+..++|+|||+.|++++.+. .+...|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 5543 5667777665 2033444444 456789999999999999887521 1226899999987
Q ss_pred -CeeeEEEe-cccCCceEEEEEeCCCCEEEEEEcC--------CcEEEEEcC-CC---eEEEEEeccCCCCCcceEEEcC
Q 001178 577 -GALKRTYI-GFRKKSAGVVQFDTTRNRILAAGED--------NQIKFWDMD-NV---NMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 577 -~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
++.. .+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++ +.......+. ..+..++|+|
T Consensus 176 ~~~~~-~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~--~~~~~~~~sp 251 (662)
T 3azo_A 176 RSAVR-ELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE--EAIAQAEWAP 251 (662)
T ss_dssp GGGSE-ESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT--BCEEEEEECT
T ss_pred CCcee-EEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC--ceEcceEECC
Confidence 5543 333 333 366778999999999987755 379999999 56 4333333222 2688999999
Q ss_pred CCCEEEEEECCCcEEEEe
Q 001178 643 EGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~ 660 (1131)
||++++++..++...||.
T Consensus 252 dg~l~~~~~~~~~~~l~~ 269 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHR 269 (662)
T ss_dssp TSCEEEEECTTSSCEEEE
T ss_pred CCeEEEEECCCCCeEEEE
Confidence 999888887788444443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-13 Score=158.43 Aligned_cols=322 Identities=10% Similarity=0.122 Sum_probs=216.5
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC--CCeEEEEEeccCCCCCcceEEEc--
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD--NVNMLTSTEAEGGLPSLPRLRFN-- 641 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~v~~s-- 641 (1131)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+. +++.+..+.... ....++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s~~ 250 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETSKM 250 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEECCS
T ss_pred CCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEccc
Confidence 7899999999999998887432 56689999999999999999999999996 778877776533 35789999
Q ss_pred --CCCCEEEEEEC-CCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 642 --KEGNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 642 --p~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
|||++++++.. ++.+.++|..+.. .+..+.
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~---------------------------------------------- 283 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQS---------------------------------------------- 283 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEE----------------------------------------------
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEe----------------------------------------------
Confidence 69999887765 5899999865541 111000
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecC
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNR 798 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~ 798 (1131)
+.+...
T Consensus 284 -----------------------------------------------------------------~~~~~~--------- 289 (567)
T 1qks_A 284 -----------------------------------------------------------------TRGMTY--------- 289 (567)
T ss_dssp -----------------------------------------------------------------CCEECT---------
T ss_pred -----------------------------------------------------------------cccccc---------
Confidence 000000
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEE--EEeCCC
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMT--TFMSPP 874 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~--~~~~~~ 874 (1131)
+ +. .+ .....+..+.+++++..+++.. .|+|.++|..+.+.+. .+. ..
T Consensus 290 ------------------~---~~----~~--~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~ 341 (567)
T 1qks_A 290 ------------------D---EQ----EY--HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AE 341 (567)
T ss_dssp ------------------T---TC----CE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CC
T ss_pred ------------------c---cc----cc--cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-cc
Confidence 0 00 00 0122455667777766555544 5888888887654322 222 23
Q ss_pred CCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeecceeEEeecc-----cccCeeEEEEccCCCE-EEEEe-CCCcEEEEEc
Q 001178 875 PASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDEVKTKLKG-----HQKHITGLAFSTNLNI-LVSSG-SDAQLIFWNT 946 (1131)
Q Consensus 875 ~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~s~dg~~-l~s~~-~Dg~v~lwd~ 946 (1131)
.....+.|+| ++++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++.. +++.. .+++|.++|.
T Consensus 342 ~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 342 RFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp SSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 4577889999 677665554 678999999999988766543 43322222 5787544 44443 4689999999
Q ss_pred CC-------CceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--------CCeEEEEeCCCc-----ccc-eeee--
Q 001178 947 DT-------WEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--------ETQLAIYDGSKM-----ECI-RQWV-- 1003 (1131)
Q Consensus 947 ~~-------~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--------d~~i~vwd~~~~-----~~~-~~~~-- 1003 (1131)
.+ ++...... .. + ..-..+.++|++++|.+.. .+.|.++|+.+. ... ..+.
T Consensus 420 ~~~~~~~~~~kvv~~i~--~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~ 493 (567)
T 1qks_A 420 DPEGHPDNAWKILDSFP--AL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 493 (567)
T ss_dssp CTTTCTTTBTSEEEEEE--CS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred CCCCCccccCEEEEEEe--cC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccc
Confidence 87 33322222 11 1 2335578999999999864 358999999877 211 2221
Q ss_pred ---cCCCCCCCeEEEEEccCCCEEEEEe-----cCCcEEEEECCCCceeeEecC
Q 001178 1004 ---PQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 1004 ---~~~~~~~~v~~i~~s~dg~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
........+..+.|++||+++.++. .++.|.|+|..+++++..+..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 494 EWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp HHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred cccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 1111145789999999999877764 379999999999999988874
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-14 Score=156.55 Aligned_cols=251 Identities=11% Similarity=0.054 Sum_probs=182.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C------------------------CeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCC
Q 001178 833 EDVVPCVALSKNDSYVMSAG-G------------------------GKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQD 886 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~ 886 (1131)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+...+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 46689999999999998877 4 379999999998887665 3445789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEeecce-eEEee---------cccccCeeEEEEcc-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDE-VKTKL---------KGHQKHITGLAFST-NLNILVSSG-SDAQLIFWNTDTWEKRKS 954 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~s~-dg~~l~s~~-~Dg~v~lwd~~~~~~~~~ 954 (1131)
++++++...++.|++|+..... .+..+ .++.....+|+++| ++.++++.+ .++.|++|+.+ ++....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999976442 44444 34555789999999 788888886 69999999954 333222
Q ss_pred eeeecCC----CCCCCCceEEEEcCC-CcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE-
Q 001178 955 IAIQLPA----GKLPVGETRVQFHSD-QVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT- 1027 (1131)
Q Consensus 955 ~~~~~~~----~~~~~~v~~v~~s~d-~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~- 1027 (1131)
....... ...-.....++++|+ +.++++. .++.|++|+..+++.+..+... .+...+.+++|+| +..+++.
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEET-TEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecC-CEEEEeCC
Confidence 2111000 001134789999999 5554554 3788999999988888877543 2356789999999 4333333
Q ss_pred ------ecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1028 ------FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1028 ------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
..+..|++|++.+++.+..+.... .....+..++++| ++.++++...+++|++|++....
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~---------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVR---------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSS---------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEECS
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCC---------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCccc
Confidence 344589999999999888775211 1223456789999 55899999999999999987543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=147.82 Aligned_cols=245 Identities=14% Similarity=0.168 Sum_probs=177.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-cCCCCEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-SPDGNFI 424 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-spdg~~l 424 (1131)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.. +... ....+|...+.++++ .++++++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~-----~~~~--------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQ-----FGEC--------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEE-----ECCB--------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEE-----eccc--------CCCcccccCceEEEEEcCCCeEE
Confidence 446799999999997 78888889999999987 443321 0000 001245567899999 5778777
Q ss_pred EEEeC-CCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec--CCccCe
Q 001178 425 GVAFT-KHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE--GHEAPV 500 (1131)
Q Consensus 425 as~~~-d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~h~~~v 500 (1131)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|++||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 76643 78999999 4554332 232 3445789999999998 7888888899999997788777664 345568
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC--ceEEEEEEccCCCEEEEEeecCCCCc-eEEEEeCCCC
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG--LWCTTMLYSADGSRLFSCGTSKEGDS-HLVEWNESEG 577 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~-~i~iwd~~~~ 577 (1131)
..+++.+ +++++++.+.++.|++||... .....+.... ..+..++++++|+.+++... ++ .|.+|+. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8898854 567777778899999999753 4444444332 46889999999988777653 54 8999995 56
Q ss_pred eeeEEEecccC-CceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 578 ALKRTYIGFRK-KSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 578 ~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
+.+..+..+.. ..+..++++|+++.+++ +.++.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 67776665432 23678999999976665 67999999998653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-10 Score=139.81 Aligned_cols=587 Identities=11% Similarity=0.071 Sum_probs=338.9
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.|....... ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA--------FTVYQHNEDDP------NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSSC--------EEEECCCTTCT------TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCCc--------eEEEeCCCCCC------CcccccceeEEEECCCCCEEE-
Confidence 45899999999995 45677666 56666322 22222110000 001245799999999998665
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCc----CCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-C-ccC-
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-H-EAP- 499 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~----~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-h-~~~- 499 (1131)
|+.+| +..||..+++.. .+.... ..|.++...++|. +.+.. . +.+.+||........+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLIST-P-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEEEE-T-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEEEE-C-CceEEEECCCCEEEeccCCCCCCcc
Confidence 44455 889998765421 121111 1288999988887 44443 3 568899943333332221 1 123
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-cCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
|.++... .++ .+..++.++.+..|+..+....... ......|.++...++|...+... ++-|..||..+++
T Consensus 175 i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTE
T ss_pred eEEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCe
Confidence 7777653 333 4555676656888887665433211 12245688888888887666542 3348999988766
Q ss_pred eeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-----CCCCCcceEEEcCCCCEE
Q 001178 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-----GGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~i~~v~~sp~~~~l 647 (1131)
....... .....|.++...++|. +..|+.+ -|.+|+..++......... -....|.++...++|. +
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-l 323 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-M 323 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-E
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-E
Confidence 5432221 1123688888887776 4445555 5899998877654432211 1123688888888887 4
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
.+|+.++-|..|+..+.. +..+ .+.
T Consensus 324 Wigt~~~Gl~~~~~~~~~--~~~~-------------------------~~~---------------------------- 348 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNR--FKNI-------------------------RNI---------------------------- 348 (795)
T ss_dssp EEEESSSCEEEECGGGGS--SEEE-------------------------CCC----------------------------
T ss_pred EEEECCCCeEEeCCCccc--ceEE-------------------------cCC----------------------------
Confidence 557777778888754320 0000 000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
. . ...-....|.++...++|. |.+++.++-+..|+.......
T Consensus 349 --------------------~-----------~-~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~----- 390 (795)
T 4a2l_A 349 --------------------P-----------Y-KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT----- 390 (795)
T ss_dssp --------------------T-----------T-SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE-----
T ss_pred --------------------C-----------C-CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE-----
Confidence 0 0 0000234577888887776 445566656666654321110
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEe----CCCCCeeEEEE
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAF 882 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~ 882 (1131)
.+....+... ..-....|.+++..++|+.|.+|. ++.|.+||..+++...... .+...|.++..
T Consensus 391 -------~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 391 -------SYTLQEDESA----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp -------EECCC----------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEE
T ss_pred -------EEecCCCCcc----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEE
Confidence 0000000000 001246789999999998444555 6789999998876543322 23457899998
Q ss_pred eCCCCcEEEEEeCCCcEEEEEeecceeEEeecc------cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001178 883 HPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG------HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 883 s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~------h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
.+ ++.+.+ |+. +-+.+|+..+++....... +...|.++...++|.+.+... +-|..|+..+++. ....
T Consensus 460 d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~~~~ 533 (795)
T 4a2l_A 460 DG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-QKAS 533 (795)
T ss_dssp CS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-EECC
T ss_pred CC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-EEec
Confidence 88 666554 445 4588899877765432211 235799999999998776554 4588899877543 1000
Q ss_pred eecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC-CCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001178 957 IQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV-LSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~dg~~l~s~~~dg~i~v 1035 (1131)
...........+.++...++|.+.+++.. .+..||..+++... +....+ ....|.++...++|++.+++ ++.|..
T Consensus 534 ~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~ 609 (795)
T 4a2l_A 534 ILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISC 609 (795)
T ss_dssp CSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEE
Confidence 00111112256888999999987766554 89999987664332 221111 14579999999999877765 467888
Q ss_pred EECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1036 FDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1036 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|+..+++.. .+......+ ......-++...+ ++ .|..|+.+| +..+++..
T Consensus 610 ~~~~~~~~~-~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 610 FNPETEKFR-NFTESDGLQ------SNQFNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EETTTTEEE-EECGGGTCS------CSCEEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred EcCCCCcEE-EcCCcCCCc------cccCccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 998876543 332222111 1112112344444 44 566777788 66677653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=177.48 Aligned_cols=286 Identities=10% Similarity=0.010 Sum_probs=186.3
Q ss_pred cCCCcEEEEEEecCCCcEEEEE--cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE---------
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVG--CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS--------- 413 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------- 413 (1131)
.|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 21 ~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~ 80 (662)
T 3azo_A 21 SRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYSGF 80 (662)
T ss_dssp HTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTCCC
T ss_pred hcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccCCc
Confidence 4888999999998864 45555 557889999964333221 1334444444
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEEec--C-CCccceeeeeec-----CcCCeeEEEEecCCCceEEEEEcCC----
Q 001178 414 RVAWS--PDGNF-IGVAFT-KHLIHLYTYQ--G-SNDLCQSLEIDA-----HVGGVNDLAFSYPNKQLCIVTCGDD---- 477 (1131)
Q Consensus 414 ~~~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~~~~-----h~~~V~~l~~s~d~~~~~l~s~s~d---- 477 (1131)
..+|+ |||+. |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~ 154 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGE 154 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCC
Confidence 55565 99998 877654 4556666665 2 33 22 2444 677899999999999 67777666
Q ss_pred ------CcEEEEeCCC------ceeEEec-CCccCeEEEeecccCCccEEEEEecC--------CeEEEEeCC-CC---c
Q 001178 478 ------KLIRVWDLSG------RKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVD--------GKIKAWLYD-NV---G 532 (1131)
Q Consensus 478 ------~~i~iwd~~~------~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~---~ 532 (1131)
..|++||..+ .....+. .+...+..++|+ +||+.|+.++.+ ..|++||++ ++ .
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999555 5556666 666677777775 577888877755 379999998 45 3
Q ss_pred eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC-------ceEEEEEeCCCCEEEE
Q 001178 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK-------SAGVVQFDTTRNRILA 605 (1131)
Q Consensus 533 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~~ 605 (1131)
.......+...+..+.|+|||++++++.. ++...|++||..+++.......+... .+..++|++++.++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 33333344677899999999995555432 33348888988777654433322211 0456889999999999
Q ss_pred EEcCCcEEEE--EcCCCeEEEEEeccCCCCCcceE-EEcCCCCEEEEEECCCcEEEE--ecCCC
Q 001178 606 AGEDNQIKFW--DMDNVNMLTSTEAEGGLPSLPRL-RFNKEGNLLVVTTADQGIKIL--ANADG 664 (1131)
Q Consensus 606 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~i~~v-~~sp~~~~l~~~~~dg~i~iw--~~~~~ 664 (1131)
++. +.+++| |+.+++ +..+..+. ..+..+ +++++.-.+++++.+....+| ++.++
T Consensus 311 ~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEc-CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 988 999999 655565 45554432 245555 444433334445555544444 54444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-13 Score=147.07 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=178.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeee---ecCcCCeeEEEEe-cCCCceEEEEEc-CCCcEE
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFS-YPNKQLCIVTCG-DDKLIR 481 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~l~~s-~d~~~~~l~s~s-~d~~i~ 481 (1131)
++-..+.+++++++|+++++...++.|.+||.. ++.+...... .+|...+.++++. +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 555679999999999988888889999999987 3433211110 1345678999995 6665 555553 388999
Q ss_pred EEeCCCceeEEecC-CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec--CCCceEEEEEEccCCCEEEE
Q 001178 482 VWDLSGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD--APGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+||.+++.+..+.. +...+..+++.+ +++++++...++.|.+||.+. .....+. .+...+..++++++|+.+++
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 99988888777643 445688888854 557777777889999999653 3333333 33346899999999987766
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEeccc-CCceEEEEEeCCCCEEEEEEcCC-cEEEEEcCCCeEEEEEeccCCCCCcc
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAAGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLP 636 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~ 636 (1131)
... ++.|++||. +++.+..+.... ......++++++++.+++...++ .|.+|+. +++.+..+..+.....+.
T Consensus 181 ~~~----~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 181 DNR----AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp EGG----GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred ECC----CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 553 778999997 466666665431 13678899999998888877775 9999995 466666666554433467
Q ss_pred eEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 637 RLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 637 ~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
.++++|+|+++++ +.++.|++|++...
T Consensus 255 ~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 255 DVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 8999999986666 67999999997543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-14 Score=157.76 Aligned_cols=264 Identities=10% Similarity=0.104 Sum_probs=175.0
Q ss_pred CCCcEEEEEEecCCCcEEEEE--------cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVG--------CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
.-..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~ 66 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRI 66 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEE
T ss_pred eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEE
Confidence 3456788888 898755542 125689999998876432 2 46889999
Q ss_pred cCCCCEEEEEeCC---C--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC----------------
Q 001178 418 SPDGNFIGVAFTK---H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD---------------- 476 (1131)
Q Consensus 418 spdg~~las~~~d---~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~---------------- 476 (1131)
||||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 67 SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 67 SPDGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCC
T ss_pred CCCCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccce
Confidence 9999999988754 3 37778887765332 333334 999999999994 555442
Q ss_pred -----------CCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCC-------eEEEEeCCCCceeEEe
Q 001178 477 -----------DKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-------KIKAWLYDNVGSRVDY 537 (1131)
Q Consensus 477 -----------d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~ 537 (1131)
...|++|| .+++.+..+.. . .+..++|+ +++ +++++..++ ...+|.++++ ....+
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l 213 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKM 213 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEE
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCC-ceEEe
Confidence 25789999 45554355555 3 77888885 466 777775542 4455555433 33333
Q ss_pred cCCCceEEEEEEccCCCEEEEEeecCC----CCceEEEEeCCCCeeeEEEecccCCceEE-EEEeCCCCEEEEEEcCCcE
Q 001178 538 DAPGLWCTTMLYSADGSRLFSCGTSKE----GDSHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 538 ~~~~~~v~~~~~s~~g~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i 612 (1131)
..+ ..+..+ +|||++|+.++.... ....|++|| +++....... ....+.. +.|+ ++ .+++++.++.+
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE-VDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT-CCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc-CCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 333 444444 999999988764221 245799998 5554333333 3346775 8899 88 88889999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE-EEEecC
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI-KILANA 662 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i-~iw~~~ 662 (1131)
++| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 286 ~l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999 876665443332 23688999999 677777777665 777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-10 Score=140.12 Aligned_cols=535 Identities=9% Similarity=0.043 Sum_probs=317.4
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|.++...++|. |-.|+.+ -+..||..+++... +... .. .....|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~------~~~~---------~~-~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTRD-GLSRYDEEKDIFQN------FFYE---------KN-GKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEESS-CEEEEETTTTEEEE------ECCE---------ET-TEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeCC-chheeCCCCCeEEe------cccc---------cc-CCCceEEEEEECCCCCEEEE
Confidence 35799999999997 3445554 48999987765332 1000 00 00011888998888887664
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecC-cCC-eeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe-cCCccCeEE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAH-VGG-VNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF-EGHEAPVYS 502 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~-V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~-~~h~~~v~~ 502 (1131)
. . +-|..||.++++... . ..++ ... |.++...+++. +. .++.++.+..|| .+++..... ......|.+
T Consensus 148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~ 219 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQA 219 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence 4 3 458899987654211 0 0011 123 88898888886 33 355555688999 444433221 123456777
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC-------CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-------PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+... .++ .+..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..
T Consensus 220 i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~ 290 (795)
T 4a2l_A 220 ILQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEG 290 (795)
T ss_dssp EEEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETT
T ss_pred EEEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCC
Confidence 7653 333 455566555588898876543332211 234699999999988666542 3 58899988
Q ss_pred CCeeeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc----CCCCCcceEEEcCCCC
Q 001178 576 EGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE----GGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 576 ~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~i~~v~~sp~~~ 645 (1131)
+++....... .....|.++...++|. |..|+.++-|..|+..++......... -....|.++...++|.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 7765433211 1224688888888776 666777778999987655432221111 0123578888888876
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
|.+|+.++-|..|+..++. +..+ ...
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~--~~~~-------------------------~~~-------------------------- 395 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQR--FTSY-------------------------TLQ-------------------------- 395 (795)
T ss_dssp -EEEEESSSCEEEECTTTCC--EEEE-------------------------CCC--------------------------
T ss_pred -EEEEECCCCeEEEcCCCCc--EEEE-------------------------ecC--------------------------
Confidence 4557777778888865441 0000 000
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSG 805 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~ 805 (1131)
. + . +...-....|.+++..++|..|.+++.++-+..|+...+..
T Consensus 396 ----------~--~--------~------------~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~---- 439 (795)
T 4a2l_A 396 ----------E--D--------E------------SARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV---- 439 (795)
T ss_dssp --------------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----
T ss_pred ----------C--C--------C------------cccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----
Confidence 0 0 0 00000235678888888887455666655677776443211
Q ss_pred ccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeC------CCCCeeE
Q 001178 806 KATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMS------PPPASTF 879 (1131)
Q Consensus 806 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~------~~~~i~~ 879 (1131)
..+.... .......|.++...++|++.+... +.|.+||..+++....... ....|.+
T Consensus 440 --------~~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 440 --------ENFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITT 502 (795)
T ss_dssp --------EEECTTT--------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEE
T ss_pred --------EEeecCC--------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEE
Confidence 0111000 001356789999999998766655 5688999887755432211 2356899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-------ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001178 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1131)
Q Consensus 880 l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~ 952 (1131)
+...+ ++.+.+ |+. +-|..|+..+++. .+. .+...|.++...++|.+.++.. . -|..||..+++..
T Consensus 503 i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 503 LFRDS-HKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK 575 (795)
T ss_dssp EEECT-TCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE
T ss_pred EEECC-CCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE
Confidence 99988 676555 444 5688999887765 222 2345799999999998766544 3 5888998775432
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC-CCCe--EEEEEccCCCEEEEEec
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL-SSPI--SSAAYSCNSQLIYATFT 1029 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~v--~~i~~s~dg~~l~s~~~ 1029 (1131)
. .....+-....+.++...++|.+.+++ ++.+..|+..+++. ..+....+. ...+ .++...++|++++ |+.
T Consensus 576 ~---~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~ 649 (795)
T 4a2l_A 576 R---YNTTNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKF-RNFTESDGLQSNQFNTASYCRTSVGQMYF-GGI 649 (795)
T ss_dssp E---ECGGGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEE-EEECGGGTCSCSCEEEEEEEECTTSCEEE-EET
T ss_pred E---eCCCCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcE-EEcCCcCCCccccCccCceeECCCCeEEE-ecC
Confidence 1 112222223568888899999876665 57788899876553 233322111 2233 5777788888666 444
Q ss_pred CCcEEEEECC
Q 001178 1030 DGSIGVFDAD 1039 (1131)
Q Consensus 1030 dg~i~vwd~~ 1039 (1131)
+| +..++.+
T Consensus 650 ~G-l~~~~p~ 658 (795)
T 4a2l_A 650 NG-ITTFRPE 658 (795)
T ss_dssp TE-EEEECGG
T ss_pred Cc-eEEEcHH
Confidence 55 5556654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-13 Score=164.37 Aligned_cols=248 Identities=9% Similarity=0.031 Sum_probs=172.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFTKH-----LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 479 (1131)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCcc
Confidence 35656789999999999999876543 899999999875432 222 22367899999999 5676666655
Q ss_pred ---------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEec-----CCeEEEEeCCC----
Q 001178 480 ---------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-----DGKIKAWLYDN---- 530 (1131)
Q Consensus 480 ---------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~---- 530 (1131)
|++|+ .++. .+.....|...+..+.|+ ++|++|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 4443 222333355567778775 56678877664 67899999976
Q ss_pred --Cc-eeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccC-CceEEEEEeCCCCEEE
Q 001178 531 --VG-SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRK-KSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 531 --~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~-~~v~~~~~s~~~~~l~ 604 (1131)
+. ....+..+...+.. .|+++|+.|+..+........|++||+.++. ....+..+.. ..+..++|++++.+++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 32 34444444444444 5889999988877533336689999998774 2344444433 3677788887777778
Q ss_pred EEEcCCc--EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEecCCC
Q 001178 605 AAGEDNQ--IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1131)
Q Consensus 605 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~ 664 (1131)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++... ..+.+.+||+.++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 8888874 666787678777777655 33678889999987666442 2468999998776
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-13 Score=147.50 Aligned_cols=221 Identities=11% Similarity=0.111 Sum_probs=150.9
Q ss_pred CCeeEEEecCCCCEEEEEe-C---Ce--EEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----------
Q 001178 834 DVVPCVALSKNDSYVMSAG-G---GK--VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----------- 896 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----------- 896 (1131)
..+..++|||||++|+..+ + +. |.+|++.+++.......+. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE-DSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT-TSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC-CCCEEEEEEccCCCcCCcEEEc
Confidence 3467899999999999876 2 33 8888998887766555433 99999999 78877777632
Q ss_pred ----------------CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC-------cEEEEEcCCCceee
Q 001178 897 ----------------STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-------QLIFWNTDTWEKRK 953 (1131)
Q Consensus 897 ----------------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-------~v~lwd~~~~~~~~ 953 (1131)
..|++||+.+++.+..+.. . .+..++|+||| +++++..++ ...+|.+++++..
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~- 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE- 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-
Confidence 5799999988887455554 3 78999999999 877776542 3455554443321
Q ss_pred eeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C--------CeEEEEeCCCcccceeeecCCCCCCCeEE-EEEccCCCE
Q 001178 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISS-AAYSCNSQL 1023 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~-i~~s~dg~~ 1023 (1131)
... . + ..+.. ++|||++|+... + ..|++|| +++.......+ ...+.. +.|+ || +
T Consensus 212 ~l~-~---~---~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~---~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 KMF-E---K---VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV---DRGVGQAKIKD-GK-V 275 (347)
T ss_dssp EEE-E---E---ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC---CSEEEEEEEET-TE-E
T ss_pred Eec-c---C---cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC---CcccCCccEEc-Cc-E
Confidence 111 1 1 12333 399999887643 2 3688888 55543333222 567886 9999 88 9
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcE-EEEecC
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSV-KVIEPS 1094 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v-~iW~~~ 1094 (1131)
+++++.++.+++| +.+++....+.. ...+ ..+.|+| .++++++.+++. .+|.+.
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~~-----------~~~v--~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAKG-----------RHWI--MGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEECS-----------SSEE--EEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEEEecCCcEEEE-EcCCceEEEecC-----------CCeE--EeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 9999999999999 886654333221 1122 3577877 577888877765 788775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-12 Score=145.73 Aligned_cols=272 Identities=11% Similarity=0.045 Sum_probs=183.3
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
..|.+++|+|++.. ++..+.++.++.|. ++... .+..+...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 45778889998874 56557788888882 22221 244566678999999999988888
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC----CcEEEEeCCCceeE-Eec--CCccCe
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD----KLIRVWDLSGRKLF-QFE--GHEAPV 500 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d----~~i~iwd~~~~~~~-~~~--~h~~~v 500 (1131)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+..+. .+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999998876332 1224667899999999998 67776666 68999994444333 332 244568
Q ss_pred EEEeecccCCccEEEEEec------CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 501 YSVCPHQKENIHFIFSTAV------DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..+++.+ ++.++++... .+.|..++.++..... +......+..++|+|+|+.++.+.. .++.|++|+.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888864 5566666543 3556666655433322 2222234788999999997766542 2678999998
Q ss_pred CC-CeeeEEE------ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC----CCCcceEEEcCC
Q 001178 575 SE-GALKRTY------IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG----LPSLPRLRFNKE 643 (1131)
Q Consensus 575 ~~-~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~v~~sp~ 643 (1131)
.+ +.....+ .......+..++++++++.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 4332211 1111125677999999998777777899999998 4666666654321 114789999999
Q ss_pred CCEEEEEECCC
Q 001178 644 GNLLVVTTADQ 654 (1131)
Q Consensus 644 ~~~l~~~~~dg 654 (1131)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 87777666653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=149.47 Aligned_cols=251 Identities=13% Similarity=0.112 Sum_probs=179.7
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
.....+++.. ++..++.. ++.|.+||..+++.+.++.. ......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 4466777743 34444444 79999999999999988853 46789999998 676655554899999999999988776
Q ss_pred ecccc-----cCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C
Q 001178 913 LKGHQ-----KHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E 985 (1131)
Q Consensus 913 ~~~h~-----~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d 985 (1131)
+.... .....+++ .+++.+++.. .++.|.+||+.+++....... + .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECCC
Confidence 65433 14567777 4444444443 488999999999775443322 1 3456789999999777753 2
Q ss_pred ----------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccC
Q 001178 986 ----------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 986 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++..... ...
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~- 263 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE- 263 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC-
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec-
Confidence 689999999998877665431 236899999999999998764 9999999988863211 011
Q ss_pred CCCCCCCccccEEEEEcCCCCCeEEEE----ecCCcEEEEecCCCccccccccCCCCCC
Q 001178 1056 ASPNSSQTVFPLVVTSHPQEPNQLAVG----LTDGSVKVIEPSETERKWGVAVPVDNGT 1110 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~p~~~~~l~s~----~~Dg~v~iW~~~~~~~~w~~~~p~~~~~ 1110 (1131)
...-.+..++++|.++.++++. ..+++|.+|+.. ++..|.+.....++.
T Consensus 264 -----~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~ 316 (328)
T 3dsm_A 264 -----FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGA 316 (328)
T ss_dssp -----CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEE
T ss_pred -----CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcce
Confidence 0023455789999777888887 778999999998 776677665444443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-12 Score=140.77 Aligned_cols=242 Identities=7% Similarity=0.001 Sum_probs=172.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.....+++|+|+|+.+++++..++.|..||..++ . . .+..+...+.+++++|+|+++
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-------------------~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-------------------PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-------------------EEESSCSSEEEEEECTTCCEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-------------------EEECCCCCcceeeECCCCcEE
Confidence 356678999999999877889999999999999876 2 2 133466789999999999988
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEE----Ec-------------CCCcEEEEeCC
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVT----CG-------------DDKLIRVWDLS 486 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s----~s-------------~d~~i~iwd~~ 486 (1131)
++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..+|..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 8877778999999988763321111111 123567899999998 6776 32 13456666644
Q ss_pred CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCC-CCce---eEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 487 GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD-NVGS---RVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 487 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
++ +..+..+......++|++ +++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|+..++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---
T ss_pred CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---
Confidence 44 444555667788898854 55677788888999999987 3322 12223334456789999999876665
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEE-eCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-DTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
++.|.+|+.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+..++..+++.
T Consensus 236 ---~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ---GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ---TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ---CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4679999986 777777776443 778889 5888889988875 455666666543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-11 Score=131.82 Aligned_cols=282 Identities=9% Similarity=-0.043 Sum_probs=193.7
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|.+++
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999997 56666667899999987 543210 1123456799999999999888
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1131)
+...++.|..||.. ++ .. ...+......+.++++.++|+ ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IK-EYTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EE-EEECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EE-EEeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 87778899999976 33 22 112233456789999999998 77777778899999975554432 233445678888
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+. +++.+.++...++.|..||. ++..... .......+..++++++|+..++... .+.|.+||. +++.....
T Consensus 148 ~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITEFK 219 (299)
T ss_dssp EC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred Ec--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEEEE
Confidence 75 45567776667789999998 4433322 3333456889999999987666532 678999998 66644321
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCC
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
.......+..+++++++..+++...++.|..||. +++. ..+....+...+.++++ +++.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212336788999999886666557789999998 4543 33333333346889999 8887666554 56777777654
Q ss_pred C
Q 001178 664 G 664 (1131)
Q Consensus 664 ~ 664 (1131)
+
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=138.17 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=186.8
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccc-cC
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQ-KH 919 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~-~~ 919 (1131)
..+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 3457777777 8999999999999999998766 5789999999 888888 45778999998 898888887653 47
Q ss_pred eeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcc
Q 001178 920 ITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKME 997 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~ 997 (1131)
+.++.+.+||+++++.+. ++.|..+|. .++....................+++.++|.++++.. ++.|..||.. |+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 889999999999999887 777877776 4444433332211101112445667899999998864 7899999998 99
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
.+..+... ..+.++.+.++|+++++++.++.|..+|..+|+.+.++....... .....+..+...+ +++
T Consensus 157 ~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~------~~l~~~~~~~~~~-~G~ 225 (276)
T 3no2_A 157 LLNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG------VQLFFVAQLFPLQ-NGG 225 (276)
T ss_dssp EEEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS------CCCSEEEEEEECT-TSC
T ss_pred EEEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC------ccccccccceEcC-CCC
Confidence 88887654 345677889999999998888899999999999998886322110 0123344566666 667
Q ss_pred eEEEEec--C------CcEEEEec-CCCccccccccCCCCCCC
Q 001178 1078 QLAVGLT--D------GSVKVIEP-SETERKWGVAVPVDNGTD 1111 (1131)
Q Consensus 1078 ~l~s~~~--D------g~v~iW~~-~~~~~~w~~~~p~~~~~~ 1111 (1131)
++++... . +..+++++ .+++..|.+....+=|.+
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~ 268 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMI 268 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCC
T ss_pred EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccce
Confidence 7777631 1 23467777 467777999888887777
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=137.36 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=178.2
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEecC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSS-ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~d~~i~vwd~~~ 440 (1131)
+|++++.++.|.+||.++|+.+-. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 789999999999999999987642 22333 4688999999999988 45778999999 6
Q ss_pred CCccceeeeeecC-cCCeeEEEEecCCCceEEEEEcC-CCcEEEEeCCCceeEEecC------CccCeEEEeecccCCcc
Q 001178 441 SNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCGD-DKLIRVWDLSGRKLFQFEG------HEAPVYSVCPHQKENIH 512 (1131)
Q Consensus 441 ~~~~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~------h~~~v~~~~~~~~~~~~ 512 (1131)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+.++.. +......+++ .++++
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77554 33333 34688999999999 6777766 7788888888988877642 1123333433 56778
Q ss_pred EEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC----
Q 001178 513 FIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK---- 588 (1131)
Q Consensus 513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 588 (1131)
++++...++.|..||.+ ++.+..+.... .+.++.+.++|+.++++.. +++|..+|..+|+.+..+.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999998 88877776543 4556788899999988764 66899999999999999874321
Q ss_pred -CceEEEEEeCCCCEEEEEEcC--------CcEEEEEc-CCCeEEEEEeccCCCCCcceEE
Q 001178 589 -KSAGVVQFDTTRNRILAAGED--------NQIKFWDM-DNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 589 -~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..++
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 126678888999888776421 23345555 4677777776665555555543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-13 Score=163.50 Aligned_cols=248 Identities=10% Similarity=-0.013 Sum_probs=168.8
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCC----eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++.+.+.+| .|++||+.+++.... ...+ ..+..++|+|||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence 4447899999999996444433333 899999999886531 1111 125679999999
Q ss_pred CEEEEEeCCCe----------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCc
Q 001178 422 NFIGVAFTKHL----------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKL 479 (1131)
Q Consensus 422 ~~las~~~d~~----------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~ 479 (1131)
+.|+.++.++. |.+|++.++... ........|...+..+.|+|||+. |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 999999886532 111122335666889999999995 444332 678
Q ss_pred EEEEe-CC------Cc-eeEEecCCccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCCce--eEEecCCCc--e
Q 001178 480 IRVWD-LS------GR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVGS--RVDYDAPGL--W 543 (1131)
Q Consensus 480 i~iwd-~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~~--~~~~~~~~~--~ 543 (1131)
|++|| .+ +. ....+..+...+... |.+ ++..|+..+. .+.|.+||+.+... ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 43 33 466676676666553 443 4455555443 33699999987642 233333433 6
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCC
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDN 619 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~ 619 (1131)
+..+.+++++.++++... ++...|++|+..+|+.+..+..+ ...+..+.++|+++.++... ..++|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877666666654 33457888998778877777765 44778889999987666443 357899999988
Q ss_pred Ce
Q 001178 620 VN 621 (1131)
Q Consensus 620 ~~ 621 (1131)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 76
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-12 Score=138.36 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=163.2
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+...+.+++|+|+|+ +++++..++.|.+||..+++... +...+...+.+++|+|+|+++
T Consensus 42 ~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~-------------------~~~~~~~~~~~i~~~~dg~l~ 101 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLF 101 (333)
T ss_dssp SSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEE
T ss_pred ccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEE-------------------EeeCCCCCcceEEECCCCcEE
Confidence 4667889999999998 78888889999999998876542 122455789999999999988
Q ss_pred EEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEec
Q 001178 425 GVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 425 as~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~ 494 (1131)
++...+ +.|.+||.+++.... ...-..+...+.+++++|+|+ ++++... .+.|..+|..+..+..+.
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEE-EEccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEee
Confidence 887766 689999998865321 111113455799999999998 5666553 355666674443344443
Q ss_pred CCccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCC-ceeEE------ecCC-CceEEEEEEccCCCEEEEEeecCCC
Q 001178 495 GHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNV-GSRVD------YDAP-GLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~-~~~~~------~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+...+..++|++ +++.+ ++.+.++.|.+|+++.. ..... .... ...+..++++++|+..++...
T Consensus 179 ~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---- 252 (333)
T 2dg1_A 179 QNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---- 252 (333)
T ss_dssp EEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----
T ss_pred cCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC----
Confidence 3444577888854 55645 45566889999998642 22111 1111 136788999999997776643
Q ss_pred CceEEEEeCCCCeeeEEEecccC-----CceEEEEEeCCCCEEEEEEcCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRK-----KSAGVVQFDTTRNRILAAGEDN 610 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg 610 (1131)
++.|.+||. +++.+..+..... ..+..++|+|+++.|++++.++
T Consensus 253 ~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 253 QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 678999998 5666666654322 1477899999988887766654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-08 Score=123.35 Aligned_cols=594 Identities=13% Similarity=0.121 Sum_probs=335.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-.++|. |-.|+.+| +..||-.+ |+.+.... ... ....-....|.++.-.++|..|-.
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~--------f~~~~~~~-~~~---~~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR--------FITYYKEE-QSS---SVQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS--------EEEECCCS-SCS---SSCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc--------eEEEEcCC-CCC---ccccccccccceEEEcCCCCEEEE
Confidence 46899999999995 55677666 56677432 22222100 000 000011346999999998983445
Q ss_pred EeCCCeEEEEEecCCCccceeee-eec---CcCCeeEEEEec--CCCceEEEEEcCCCcEEEEeCCCceeEEecC-----
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLE-IDA---HVGGVNDLAFSY--PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG----- 495 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~-~~~---h~~~V~~l~~s~--d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----- 495 (1131)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 66774599999887542210000 000 123588888877 665 4445544568889944444444321
Q ss_pred -CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------cCCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
....|.++... .++ .|..++.++-+..||..+....... ......|.++...++|...+... .
T Consensus 160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 12457777653 333 4556776766888887765433211 11234688999988888766542 3
Q ss_pred eEEEEeCCCCeeeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-------cc-----
Q 001178 568 HLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE-------AE----- 629 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 629 (1131)
-+.+||..+++....... .....|.++...+++ .|..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 689999877654432211 123368888877766 46667775678999988765432221 10
Q ss_pred CCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCC
Q 001178 630 GGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709 (1131)
Q Consensus 630 ~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 709 (1131)
-....|.++...++|. |-+|+.++-|..++..... +..+.. .+.
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~-----------------------~~~---------- 353 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY-----------------------SPT---------- 353 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------------------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc-----------------------Ccc----------
Confidence 1123578888888876 4556766777777764431 000000 000
Q ss_pred CCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecc
Q 001178 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNG 789 (1131)
Q Consensus 710 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 789 (1131)
. .....-....|.+++..++|. |.+++.++
T Consensus 354 -----------------------------~--------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~ 383 (781)
T 3v9f_A 354 -----------------------------Q--------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGG 383 (781)
T ss_dssp -----------------------------C--------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSS
T ss_pred -----------------------------c--------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCC
Confidence 0 000001234577888777776 44455455
Q ss_pred eeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEE
Q 001178 790 VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTT 869 (1131)
Q Consensus 790 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~ 869 (1131)
-+..|+...... ..+. .. .......|.+++..++|.+.+...++.|..++..+++....
T Consensus 384 Gl~~~~~~~~~~------------~~~~-~~--------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 384 GINVFENGKRVA------------IYNK-EN--------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII 442 (781)
T ss_dssp CEEEEETTEEEE------------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred cEEEEECCCCeE------------EEcc-CC--------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence 566665432110 0000 00 01235678999998888877654467799999887755432
Q ss_pred Ee--CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc-----ccCeeEEEEccCCCEEEEEeCCCcEE
Q 001178 870 FM--SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH-----QKHITGLAFSTNLNILVSSGSDAQLI 942 (1131)
Q Consensus 870 ~~--~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~dg~~l~s~~~Dg~v~ 942 (1131)
.. .....|.++...+ ++.+.+ |+. +-|..|+..+++........ ...|.++...++|.+.+....+| |.
T Consensus 443 ~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VG 518 (781)
T ss_dssp CSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EE
T ss_pred ccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EE
Confidence 21 2346788998887 666554 555 56888998776543322212 35799999999988766544344 77
Q ss_pred EEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeE-EEEeCCCcccceeeecCCC-CCCCeEEEEEccC
Q 001178 943 FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQL-AIYDGSKMECIRQWVPQDV-LSSPISSAAYSCN 1020 (1131)
Q Consensus 943 lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i-~vwd~~~~~~~~~~~~~~~-~~~~v~~i~~s~d 1020 (1131)
.|+..+++... .....+-....+.++...++|.+.+++. +.+ ..||..+++. ..+....+ ....|.++...++
T Consensus 519 ~~~~~~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~ 593 (781)
T 3v9f_A 519 IYTPDMQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKN 593 (781)
T ss_dssp EECTTCCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSS
T ss_pred EEeCCCCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE-EEccccCCCCCceEEEEEECCC
Confidence 88887654221 1112222235688999999998777666 455 8898876653 22221111 1346889999999
Q ss_pred CCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1021 SQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
|++.+++ ++.|..|+..+++. ..+......+ ......-++...+ ++ .|..|+.+| +..+++..-
T Consensus 594 g~lW~~t--~~Gl~~~~~~~~~~-~~~~~~dGl~------~~~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 594 GNIWAST--NTGISCYITSKKCF-YTYDHSNNIP------QGSFISGCVTKDH-NG-LIYFGSING-LCFFNPDIA 657 (781)
T ss_dssp SCEEEEC--SSCEEEEETTTTEE-EEECGGGTCC------SSCEEEEEEEECT-TS-CEEEEETTE-EEEECSCCG
T ss_pred CCEEEEc--CCceEEEECCCCce-EEecccCCcc------ccccccCceEECC-CC-EEEEECCCc-eEEEChhhc
Confidence 9876654 34588888876653 2332211111 1111111333333 44 566788788 667776543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-13 Score=162.94 Aligned_cols=247 Identities=11% Similarity=-0.039 Sum_probs=163.7
Q ss_pred cCCCCCEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc-
Q 001178 406 KDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL- 479 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~- 479 (1131)
.+|...+.+++|||||++||.+ +.+.+|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4677789999999999999944 4457899999999875411 011111 126899999999 6777777765
Q ss_pred ------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEecCC----eEEEEeCCCCceeEEec
Q 001178 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG----KIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 480 ------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~~wd~~~~~~~~~~~ 538 (1131)
|++|+ .++. .+.....|...+..+.|+ ++|++|+.++.++ .|.+|+..++. ...+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 99999 4444 334444566678888885 5667777776655 66667654443 33333
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--eEEEeccc-CCceEEEEEeCCCCEEEEEEcCCcEEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFR-KKSAGVVQFDTTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw 615 (1131)
.+...+....+ ++|. ++..+.....++.|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444455555 6777 555543222468999999987753 23333333 4467778888 66778888889988888
Q ss_pred EcC-CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC----CCcEEEEecCCC
Q 001178 616 DMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1131)
Q Consensus 616 d~~-~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~ 664 (1131)
.+. .++....+..+. ...+..++++|++..++.... .+.|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554332 225778889999887764433 468999998776
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=165.98 Aligned_cols=248 Identities=10% Similarity=-0.063 Sum_probs=161.8
Q ss_pred CCCcEEEEEEecCCCcEEEEE----cCCCeEEEEECCCCccc-ccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERL-VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg----~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
|...+.+++|||||++++++. +.+.+|++||+.+|+.+ .. .+.+. ....++|+||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 556799999999999644443 33468999999998865 21 01111 1257899999
Q ss_pred CCEEEEEeCCCe-------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC----cEEE
Q 001178 421 GNFIGVAFTKHL-------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRV 482 (1131)
Q Consensus 421 g~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~----~i~i 482 (1131)
|+.|+.++.|.. |++|++.++... ........|...+.++.|+|||+. |+.++.++ .|++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999988776 999999887532 122233446678999999999995 45444444 6777
Q ss_pred EeCCCceeEEecCCccCeEEEeecccCCccEEEEEe---cCCeEEEEeCCCCce---eEEecCC-CceEEEEEEccCCCE
Q 001178 483 WDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGS---RVDYDAP-GLWCTTMLYSADGSR 555 (1131)
Q Consensus 483 wd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~~g~~ 555 (1131)
||..+.....+..+...+....+ +++.+++.+. .++.|.+||++++.. ...+..+ ...+..+.++ ++..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 257 KRPGEKDFRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp ECTTCSSCEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EcCCCCceEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 77433345556556666665555 2334444443 358899999977653 2223222 4467888888 5666
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCeE
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1131)
+++... ++...|++++.. ++..+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 333 v~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 666654 223345555543 5555555544344667788899988776433 347899999998774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-11 Score=136.01 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=142.9
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
...++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++++.+++.+.||.+.+++. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34789999999999876 36799999 99998888 65432 24556645667777889999999999 877653
Q ss_pred eec-----ccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcE
Q 001178 912 KLK-----GHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 912 ~~~-----~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~ 979 (1131)
... ....++ ....+.+++..++..+..+.+.+.|+.+........+.... +..+.....++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 112222 33567777766555557889999999765322111111110 111123445789999998
Q ss_pred EEEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeE
Q 001178 980 LLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCR 1046 (1131)
Q Consensus 980 l~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~ 1046 (1131)
+.+.. .+.|.++|..+++.+..+... ....+++|+|||+ +++++. .++.|.|||+.+++.+..
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 88743 257999999999999888553 4689999999999 777777 489999999999999887
Q ss_pred e
Q 001178 1047 I 1047 (1131)
Q Consensus 1047 ~ 1047 (1131)
+
T Consensus 357 i 357 (373)
T 2mad_H 357 T 357 (373)
T ss_pred e
Confidence 4
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-12 Score=138.57 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=166.3
Q ss_pred ccCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 405 VKDSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 445566788999999998 7788888999999999876 32 3556777899999999998 77777778899999
Q ss_pred e-CCCceeEEecCC----ccCeEEEeecccCCccEEEE----Eec-------------CCeEEEEeCCCCceeEEecCCC
Q 001178 484 D-LSGRKLFQFEGH----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPG 541 (1131)
Q Consensus 484 d-~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~ 541 (1131)
| .+++........ ...+..+++. ++|.++++ ++. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 477654333221 1245667775 46677776 331 2455555544 3333444455
Q ss_pred ceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC-CCee---eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 542 LWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES-EGAL---KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
.....++|+|+|+.+++... ++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 56789999999999844432 6789999986 5554 3444 2233356679999999866555 789999998
Q ss_pred CCCeEEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCC
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANAD 663 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~ 663 (1131)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 6 677776665442 789999 58999999988764 33344433
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-12 Score=137.66 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=144.3
Q ss_pred CeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-ceeE
Q 001178 835 VVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV-DEVK 910 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~-~~~~ 910 (1131)
....++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||.+.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence 345689999999888875 4789999999999999987533 1 223333 566777888899998888876 5543
Q ss_pred Eeeccc----ccCee-EEEEc-cCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec------CCCCCCCCceEEEEcCCCc
Q 001178 911 TKLKGH----QKHIT-GLAFS-TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL------PAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 911 ~~~~~h----~~~V~-~l~~s-~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~v~~s~d~~ 978 (1131)
.....+ ..++. ..+|. ++|++++ .+.+|+|.+.|+.+........... ..+-.......++++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~ 292 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD 292 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCC
Confidence 222111 12222 24664 6775554 5568999999997754221111110 0111123455688899999
Q ss_pred EEEEEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceee
Q 001178 979 RLLVNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 979 ~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~ 1045 (1131)
.+++.. .+.|.++|+.+++.+..+... ..+++++|++|++ +|+++. .++.|.|+|..+++.+.
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg----~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC----CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 988853 246999999999999998764 4788999999997 777765 48999999999999999
Q ss_pred EecC
Q 001178 1046 RIAP 1049 (1131)
Q Consensus 1046 ~~~~ 1049 (1131)
++..
T Consensus 369 ~i~~ 372 (386)
T 3sjl_D 369 SVNQ 372 (386)
T ss_dssp EECC
T ss_pred EecC
Confidence 8874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-12 Score=139.68 Aligned_cols=269 Identities=12% Similarity=-0.010 Sum_probs=182.9
Q ss_pred CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCcccee
Q 001178 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447 (1131)
Q Consensus 368 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 447 (1131)
.+++|.+||..+++..... +.... -.........+++. +++.+++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~~~n---------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FYRAN---------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HHHHH---------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hhhhc---------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3789999999998865421 00000 01122456778774 455666666789999999999876543
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc-----cCeEEEeecccCCccEEEEEe-cC
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE-----APVYSVCPHQKENIHFIFSTA-VD 520 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~d 520 (1131)
+. .......++++++++ ++++...++.|.+|| .+++....+.... .....+++ .++..+++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCC
Confidence 33 345689999999985 666666789999999 6777666665332 14456665 2334444443 48
Q ss_pred CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC------CceEEEEeCCCCeeeEEEecccCCceEEE
Q 001178 521 GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSHLVEWNESEGALKRTYIGFRKKSAGVV 594 (1131)
Q Consensus 521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 594 (1131)
+.|.+||..+.+....+... .....+.++|+|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 99999999988776665543 335688999999876665421000 26899999999998877764333367889
Q ss_pred EEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC-CCCEEEEE----ECCCcEEEEecC
Q 001178 595 QFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK-EGNLLVVT----TADQGIKILANA 662 (1131)
Q Consensus 595 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp-~~~~l~~~----~~dg~i~iw~~~ 662 (1131)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+|+..
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999999888755 89999998877532111111122568899999 55555555 568899999986
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-11 Score=134.66 Aligned_cols=151 Identities=8% Similarity=-0.063 Sum_probs=111.3
Q ss_pred cccCCccEEEEEec-----CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeC
Q 001178 506 HQKENIHFIFSTAV-----DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNE 574 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~ 574 (1131)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777755 689999999998888777655555 4 9999999999887520 011567999999
Q ss_pred CCCeeeEEEeccc------CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE
Q 001178 575 SEGALKRTYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL 646 (1131)
Q Consensus 575 ~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~ 646 (1131)
.+++.+..+.... ......+.|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875321 113445899999999998864 68999999999999998865431 2233334566
Q ss_pred EEEEECCCcEEEEecCC
Q 001178 647 LVVTTADQGIKILANAD 663 (1131)
Q Consensus 647 l~~~~~dg~i~iw~~~~ 663 (1131)
+++.+.||.+.+.++.+
T Consensus 192 ~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEETTSCEEEEECCS
T ss_pred eEEECCCCCEEEEECCC
Confidence 77888888888887654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-10 Score=124.14 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=169.8
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.+...+.+++++++|+.+++...++.|.+||.. ++ +.. ..+..+...+.++++.++|. ++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC
Confidence 455689999999999988877668899999988 44 221 12233456799999999998 67777778899999955
Q ss_pred CceeEEec--CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 487 GRKLFQFE--GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 487 ~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
++. ..+. .....+.++++. +++.++++...++.|..||. ++... .........+..++++++|+..++...
T Consensus 87 g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-- 160 (299)
T 2z2n_A 87 GII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-- 160 (299)
T ss_dssp SCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--
T ss_pred CcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--
Confidence 543 2222 244568888875 45577777777889999998 33332 223334457899999999987776542
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
.+.|..||. +++............+..+++++++..+++...++.|.+|+. +++... +........+..++++++
T Consensus 161 --~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 --NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAG 235 (299)
T ss_dssp --TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECST
T ss_pred --CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCC
Confidence 678999998 666554322222335778999999887666666889999999 665433 333333346789999999
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
|++.++...++.|..|+.
T Consensus 236 g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCEEEEETTTTEEEEEET
T ss_pred CCEEEeccCCceEEEECC
Confidence 986666557788999986
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-10 Score=126.35 Aligned_cols=279 Identities=10% Similarity=-0.018 Sum_probs=191.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
....+.+++++++|+ +.++...++.|.+||.. ++... + .+..+...+.+++++++|++++
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~------~------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE------F------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE------E------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE------E------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999997 66766678999999987 54321 0 1223346799999999999888
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCccCeEEEe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVC 504 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~ 504 (1131)
+...++.|..||.. ++. . ...+......+.++++.++|+ ++++...++.|..+|..++.... +......+..++
T Consensus 78 ~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77778899999987 442 2 122333446789999999998 67777778899999955665432 333445678888
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
+. +++++.++...++.|..++.. +.... ........+..++++++|+..++... .+.|.+|+. +++.....
T Consensus 153 ~d--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LG--SDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp EC--TTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred EC--CCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 75 455666666667899999983 33222 22233456889999999987666532 568999998 55544332
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
.......+..++++++++..++...++.|..|+. +++.. ..........+.++++.++|.+.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2222335788999999886666656789999998 44433 332332234678999999998665544 4 6666654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-12 Score=135.47 Aligned_cols=239 Identities=9% Similarity=-0.043 Sum_probs=164.8
Q ss_pred cEEEEEEecCCCcEEE-EEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 349 SVVSMDFHPFHHTLLV-VGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~lla-sg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999997 666 54678899999976554321 011233567889999999966666
Q ss_pred eCCCeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
. ++.|.+||..+.... .+. .....+.++++.++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 122 2335789999999998 777777788999998 333333222233345677887
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.+ +++++++...++.|.+|+.+..............+..++++++|...++... ++.|.+|+........ ...
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~-~~~ 230 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTV-LPF 230 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEE-CCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCccee-ecc
Confidence 54 5567777777889999998765544332233356889999999976666543 6789999987654332 221
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.....+..++++++|+.+++...++.|+++++...+
T Consensus 231 ~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 231 TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 122357889999999988888889999999987543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-08 Score=124.37 Aligned_cols=540 Identities=11% Similarity=0.040 Sum_probs=309.0
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC--CCCEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP--DGNFIG 425 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~la 425 (1131)
..|.++...++|.. |-.|+.++-+..||..+++... +..... . ...-....|.++.... +|...+
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~------~~~~~~----~--~~~l~~~~i~~i~~d~~~~g~lwi 132 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSV------YQYNPE----D--PQSLITNDVTHITSSVQAGKGLWV 132 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEE------ECCCTT----C--SSSCSCSCEEEEEECSSTTSEEEE
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEe------eccccC----C--CCCcccCcceEEEecCccCCCEEE
Confidence 46999999988862 4456667579999988765432 100000 0 0001124688998888 776544
Q ss_pred EEeCCCeEEEEEecCCCccceeee--ee-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-------
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLE--ID-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG------- 495 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~--~~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------- 495 (1131)
++.++-|..||.++++.. .... .. -....|.++...++|. +..+..++-+..||........+..
T Consensus 133 -~t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 207 (781)
T 3v9f_A 133 -CTYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS 207 (781)
T ss_dssp -EESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred -EECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence 553445888998765421 1100 00 1134588888888876 4445555568889944443333321
Q ss_pred -CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-------CCCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 496 -HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 496 -h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
....|.++... .++. |..++.+ -+..||..+........ .....|.++...++|...+... .+
T Consensus 208 l~~~~i~~i~~d--~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~~ 278 (781)
T 3v9f_A 208 LPGNDVRCIYKD--TNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATE-----LN 278 (781)
T ss_dssp -CCSSEEEEEEC--TTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEES-----SS
T ss_pred CCCCceeEEEEc--CCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeC-----CC
Confidence 13457777653 4444 4445555 68888876554332111 1234689999988887665442 35
Q ss_pred eEEEEeCCCCeeeEEEe-------------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe-------
Q 001178 568 HLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE------- 627 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 627 (1131)
-|.++|..++....... +.....|.++...++|. |..|+.++-|..++..+........
T Consensus 279 Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 357 (781)
T 3v9f_A 279 GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNE 357 (781)
T ss_dssp CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCS
T ss_pred CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccccc
Confidence 68889987665432211 11233688888887765 6667777779999887654332211
Q ss_pred ccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccccc
Q 001178 628 AEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVD 707 (1131)
Q Consensus 628 ~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~ 707 (1131)
..-....|.++...++|.+ .+|+.++-|..|+..++. ...+. +.
T Consensus 358 ~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~--~~~~~-------------------------~~-------- 401 (781)
T 3v9f_A 358 SSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRV--AIYNK-------------------------EN-------- 401 (781)
T ss_dssp SCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEE--EECC------------------------------------
T ss_pred CCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCe--EEEcc-------------------------CC--------
Confidence 0111235788888887764 456666667888764331 00000 00
Q ss_pred CCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee
Q 001178 708 RSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS 787 (1131)
Q Consensus 708 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 787 (1131)
.......|.++...++|...+ ++.
T Consensus 402 -------------------------------------------------------~~~~~~~v~~i~~d~~g~lWi-gt~ 425 (781)
T 3v9f_A 402 -------------------------------------------------------RELLSNSVLCSLKDSEGNLWF-GTY 425 (781)
T ss_dssp ---------------------------------------------------------CCCSBEEEEEECTTSCEEE-EET
T ss_pred -------------------------------------------------------CCCCCcceEEEEECCCCCEEE-Eec
Confidence 000235577777777776444 454
Q ss_pred cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeE
Q 001178 788 NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVM 867 (1131)
Q Consensus 788 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~ 867 (1131)
++-+..++... +..............|.++...++|++.+... +.|.+||..+++..
T Consensus 426 ~~Gl~~~~~~~----------------------~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 426 LGNISYYNTRL----------------------KKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp TEEEEEECSSS----------------------CEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred cCCEEEEcCCC----------------------CcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 44555554322 11111100012356788999988887665544 67999998876654
Q ss_pred EEEeCC-----CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecc---cccCeeEEEEccCCCEEEEEeCCC
Q 001178 868 TTFMSP-----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 868 ~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
...... ...|.++...+ ++.+.+ |+.++-+..|+..+++...-... ....|.++...++|.+.++.. +|
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G 559 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG 559 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE
T ss_pred ecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC
Confidence 433222 35789999888 666554 55545577788766654332111 235689999999988766544 66
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCC---CCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL---SSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~---~~~v~~i~ 1016 (1131)
.|..||..+++... .....+-....+.++...++|.+.+++ .+.|..++..+.+. ..+....+. .-...++.
T Consensus 560 lv~~~d~~~~~~~~---~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~ 634 (781)
T 3v9f_A 560 LVCFPSARNFDYQV---FQRKEGLPNTHIRAISEDKNGNIWAST-NTGISCYITSKKCF-YTYDHSNNIPQGSFISGCVT 634 (781)
T ss_dssp EEEESCTTTCCCEE---ECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEE-EEECGGGTCCSSCEEEEEEE
T ss_pred ceEEECCCCCcEEE---ccccCCCCCceEEEEEECCCCCEEEEc-CCceEEEECCCCce-EEecccCCccccccccCceE
Confidence 54888887654221 112222223567889999999876665 45578888775543 233222111 11235677
Q ss_pred EccCCCEEEEEecCCcEEEEECCC
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
..++|++++ |+.+| +..++...
T Consensus 635 ~~~~G~l~~-g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 635 KDHNGLIYF-GSING-LCFFNPDI 656 (781)
T ss_dssp ECTTSCEEE-EETTE-EEEECSCC
T ss_pred ECCCCEEEE-ECCCc-eEEEChhh
Confidence 788888666 45565 56666553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.5e-12 Score=133.62 Aligned_cols=240 Identities=10% Similarity=0.027 Sum_probs=165.9
Q ss_pred CeeEEEecCCCCEEE-EEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVM-SAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+++++++|++.+ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999766 434 68899999876543322223335688999999 777666555 88999999776543322
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEE
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIY 991 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vw 991 (1131)
.......+.+++++++|+++++...++.|.+|+..+...... ... .......++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-----PFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----CCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----ccc-cCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 223335689999999999888888888999997655332111 111 114567899999998666654 6899999
Q ss_pred eCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEE
Q 001178 992 DGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTS 1071 (1131)
Q Consensus 992 d~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~ 1071 (1131)
+............. ...+.+++++++|.++++...++.|.+|+..+..... ... .+...+..+++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-----------~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-----------TGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-----------CSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-----------CCCCCceeEEE
Confidence 98876544332222 3678999999999877777678899999987654322 110 11123557888
Q ss_pred cCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1072 HPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1072 ~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
.| +++++++...+++|+++++...+.
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCccc
Confidence 88 567999999999999999987763
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-10 Score=128.57 Aligned_cols=274 Identities=9% Similarity=-0.041 Sum_probs=176.9
Q ss_pred EEecCCCcEEEEEc-CCC---eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-
Q 001178 354 DFHPFHHTLLVVGC-GDG---EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF- 428 (1131)
Q Consensus 354 ~fspdg~~llasg~-~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~- 428 (1131)
...|++++++++-. ..+ +|.+||..+++.+.. +.....+ .+++||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 34467765444332 222 899999999886542 1112223 899999999998885
Q ss_pred ---------CCCeEEEEEecCCCccceeeeee--cC---cCCeeEEEEecCCCceEEEEEc--CCCcEEEEeCCCceeEE
Q 001178 429 ---------TKHLIHLYTYQGSNDLCQSLEID--AH---VGGVNDLAFSYPNKQLCIVTCG--DDKLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 429 ---------~d~~i~vwd~~~~~~~~~~~~~~--~h---~~~V~~l~~s~d~~~~~l~s~s--~d~~i~iwd~~~~~~~~ 492 (1131)
.++.|.+||..+.+.+.... +. .+ ...-..++|+|||+ +|+.++ .++.|.++|.+++.+..
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD~t~~~~~~ 162 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVVQGGSSDDQ 162 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEECCCCEEeE
Confidence 36789999998876544221 11 00 12345899999999 455554 25789999933444444
Q ss_pred -ecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-----CCCce-EEEEEEccCCCEEEEEeecCCC
Q 001178 493 -FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-----APGLW-CTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 493 -~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~-v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
+. .... +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 163 ~i~-~~~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---- 232 (373)
T 2mad_H 163 LLS-SPTC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---- 232 (373)
T ss_pred EcC-CCce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----
Confidence 33 2222 33333333 45667788999999999 665542211 11111 233556777666555543
Q ss_pred CceEEEEeCCCCe--eeEEEecc---------cCCceEEEEEeCCCCEEEEEEc----------CCcEEEEEcCCCeEEE
Q 001178 566 DSHLVEWNESEGA--LKRTYIGF---------RKKSAGVVQFDTTRNRILAAGE----------DNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 566 ~~~i~iwd~~~~~--~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 624 (1131)
.+.+.+.|...+. .+..+... .......+.++|++++++++.. ++.|.++|..+++.+.
T Consensus 233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence 6689999986543 22222110 0112344789999998888653 3579999999999999
Q ss_pred EEeccCCCCCcceEEEcCCCC-EEEEEE-CCCcEEEEecCCC
Q 001178 625 STEAEGGLPSLPRLRFNKEGN-LLVVTT-ADQGIKILANADG 664 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~-~l~~~~-~dg~i~iw~~~~~ 664 (1131)
.+.... ....++|+|||+ .++++. .++.|.++|..++
T Consensus 313 ~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 313 QISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 886544 468999999999 777777 5899999999887
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-11 Score=135.65 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=144.8
Q ss_pred eeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 836 VPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 836 i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 34578999999998876 46899999999999998875322 334443446666777888888888765554422
Q ss_pred ----ecccccCe-eEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC------CCCCCCceEEEEcCCCcEEE
Q 001178 913 ----LKGHQKHI-TGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA------GKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 913 ----~~~h~~~V-~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~v~~s~d~~~l~ 981 (1131)
+.....++ ..+.|++++..++..+..+.|.+.|..+............. +........++++||+.+++
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 22112222 23578999988877788899999998764422111111110 00112233478999999887
Q ss_pred EEe-----------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCC-EEEEEe-cCCcEEEEECCCCceeeEe
Q 001178 982 VNH-----------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQ-LIYATF-TDGSIGVFDADSLRLRCRI 1047 (1131)
Q Consensus 982 ~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1047 (1131)
+.. ++.|.++|..+.+.+..+... ....+++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 752 347999999999999998764 3688999999999 888888 5899999999999999887
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-12 Score=154.22 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=159.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCc--
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTK-----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKL-- 479 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~-- 479 (1131)
+|...+..++|||||++||.++.+ .+|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455578899999999999987654 4699999999875431 112222467899999 7 4555555443
Q ss_pred ------------EEEEe-CCCc----eeEEecCCccCeEEEeecccCCccEEEEEecCC-----eEEEEeCCCCc-e-eE
Q 001178 480 ------------IRVWD-LSGR----KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNVG-S-RV 535 (1131)
Q Consensus 480 ------------i~iwd-~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~-~-~~ 535 (1131)
|++|+ .++. .+.....+...+..+.| ++||++|+..+.++ .|++||+.++. . ..
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999 4443 22233334345777777 45677888776544 89999998762 2 33
Q ss_pred EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC-eeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG-ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 536 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
.+..+...+... ++|+|+.|+..+......+.|++||+.++ .....+..+....+..+.++ ++..+++...|+..++
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 444443334444 35899999888754334678999999875 23333334444456667777 4567777888888777
Q ss_pred EEcC-CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEE----CCCcEEEEecCCC
Q 001178 615 WDMD-NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT----ADQGIKILANADG 664 (1131)
Q Consensus 615 wd~~-~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~----~dg~i~iw~~~~~ 664 (1131)
|.+. ++.....+..+. ...+..++++|++..++... ..+.|++||+.++
T Consensus 389 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 7554 455555554322 23578889999987665332 2468999998776
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=152.19 Aligned_cols=247 Identities=8% Similarity=-0.055 Sum_probs=155.2
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCC----CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++++.+.+ .+|++||+.+|+.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 334788999999999644443333 3699999999886531 001112357899999
Q ss_pred CEEEEEeCCCe--------------EEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----CCcEE
Q 001178 422 NFIGVAFTKHL--------------IHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD-----DKLIR 481 (1131)
Q Consensus 422 ~~las~~~d~~--------------i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~-----d~~i~ 481 (1131)
+.|+.++.++. |.+|++.++... ........|...+..+.|||||+. |+..+. ...|+
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99998877654 889998776521 112222234446899999999994 444443 34899
Q ss_pred EEe-CCCc-e-eEEecCCccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCC--ceeEEecCCCceEEEEEEccC
Q 001178 482 VWD-LSGR-K-LFQFEGHEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNV--GSRVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd-~~~~-~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~ 552 (1131)
+|| .++. . ...+..+...+....+ +++..|+..+. ++.|.+||+++. .....+..+...+..+.++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 4441 3 5566655555554432 34566766665 345999998874 2233334444456677777 4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCeE
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1131)
+..+++... ++...|++++. ++...+.+.......+..+.++|+++.++... ..++|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 455555543 23345566665 35555555543344678889999987655332 357899999998873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-10 Score=123.29 Aligned_cols=238 Identities=13% Similarity=0.118 Sum_probs=161.7
Q ss_pred CCeeEEEecCCCCEEEE-------Ee-CCeEEEEECCCceeEEEEe----CCCCCeeEEEEeCCC-CcEEEEEeCCCcEE
Q 001178 834 DVVPCVALSKNDSYVMS-------AG-GGKVSLFNMMNFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGMEDSTIQ 900 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~-~~~la~g~~dg~I~ 900 (1131)
....+++|+++|+++++ .. ++.|.+||..+++...... ++...+.++++++ + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 45678999999988887 33 7899999988877643322 1346789999999 6 77665444 44788
Q ss_pred EEEeecceeEEe-ecc----cccCeeEEEEccCCCEEEEEeCC---------------CcEEEEEcCCCceeeeeeeecC
Q 001178 901 IYNVRVDEVKTK-LKG----HQKHITGLAFSTNLNILVSSGSD---------------AQLIFWNTDTWEKRKSIAIQLP 960 (1131)
Q Consensus 901 iwd~~~~~~~~~-~~~----h~~~V~~l~~s~dg~~l~s~~~D---------------g~v~lwd~~~~~~~~~~~~~~~ 960 (1131)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..|+.. ++.... ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~- 170 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV--DTA- 170 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE--EEE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe--ccC-
Confidence 99987 665433 221 12458899999999988887665 567777765 332211 110
Q ss_pred CCCCCCCceEEEEc----CCCcEEEEE--eCCeEEEEeCC-Ccccc--eeeecCCCCC-CCeEEEEEccCCCEEEEEecC
Q 001178 961 AGKLPVGETRVQFH----SDQVRLLVN--HETQLAIYDGS-KMECI--RQWVPQDVLS-SPISSAAYSCNSQLIYATFTD 1030 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s----~d~~~l~~~--~d~~i~vwd~~-~~~~~--~~~~~~~~~~-~~v~~i~~s~dg~~l~s~~~d 1030 (1131)
......++++ |+++.|.++ .++.|.+|+.. +++.. ..+.....+. ..+..++++++|+++++...+
T Consensus 171 ----~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 171 ----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp ----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred ----CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 0345788999 999766654 36889999976 34321 1111111112 568899999999988888788
Q ss_pred CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC-eEEEEecCCcEEEEecCC
Q 001178 1031 GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN-QLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1031 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~-~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.|.+||..+++....+..+. ..+..++|+| +++ ++++...++.|..|++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~------------~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPF------------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSS------------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCC------------CCceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998787666554221 2345688877 556 556666678999999864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-10 Score=126.40 Aligned_cols=296 Identities=7% Similarity=-0.059 Sum_probs=191.2
Q ss_pred cCCccEEEEEec-C----CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCC
Q 001178 508 KENIHFIFSTAV-D----GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESE 576 (1131)
Q Consensus 508 ~~~~~~l~s~s~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~ 576 (1131)
.++++.++.... + +.|.++|..+.+....+.....+ .+.++|||++++++... +..++.|.++|..+
T Consensus 81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 345555655544 2 79999999999888877766555 89999999999887631 01256899999999
Q ss_pred CeeeEEEecc--c----CCceEEEEEeCCCCEEEEEEc--CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC-CEE
Q 001178 577 GALKRTYIGF--R----KKSAGVVQFDTTRNRILAAGE--DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NLL 647 (1131)
Q Consensus 577 ~~~~~~~~~~--~----~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l 647 (1131)
++.+..+.-. . ......+.|+|||++++++.. ++.|.+.|+.+++.+..+...+ +....|++ +.+
T Consensus 159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~~~~~p~g~~~~ 232 (426)
T 3c75_H 159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------CYHIFPASPTVF 232 (426)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------EEEEEEEETTEE
T ss_pred CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------ceeeccCCCcEE
Confidence 9998877532 0 112345889999999999874 5889999999999998887532 12333433 556
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
++.+.||.+.+.+..++. ......
T Consensus 233 v~~~~dG~~~~V~~~~~~-v~~~~~------------------------------------------------------- 256 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGE-TKVTNT------------------------------------------------------- 256 (426)
T ss_dssp EEEETTSSEEEEECCTTC-CEEEEC-------------------------------------------------------
T ss_pred EEEcCCCCEEEEECCCCc-EEEEee-------------------------------------------------------
Confidence 667778888877763331 110000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
..++... ......+.+++++..++.....+.+.+.|+.......
T Consensus 257 --------------~~~~v~~------------------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v---- 300 (426)
T 3c75_H 257 --------------EVFHTED------------------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF---- 300 (426)
T ss_dssp --------------CCCSCTT------------------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE----
T ss_pred --------------eeeccCC------------------CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE----
Confidence 0000000 0001123566777777666667777777764321100
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-----------CCeEEEEECCCceeEEEEeCCCCC
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-----------GGKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
..-|........... ........+++++|++.+.+.. ++.|.++|+.+++.+.++... ..
T Consensus 301 -----~~~~~~~~~~~i~~g---~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~ 371 (426)
T 3c75_H 301 -----RAPIEALTEAERADD---WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HE 371 (426)
T ss_dssp -----CCCEESSCTTTGGGT---EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EE
T ss_pred -----eeeeeeccccccccc---cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CC
Confidence 001111110000000 0111222468999999877764 247999999999999998743 25
Q ss_pred eeEEEEeCCCCc-EEEEEe-CCCcEEEEEeecceeEEee
Q 001178 877 STFLAFHPQDNN-IIAIGM-EDSTIQIYNVRVDEVKTKL 913 (1131)
Q Consensus 877 i~~l~~s~~~~~-~la~g~-~dg~I~iwd~~~~~~~~~~ 913 (1131)
...++|+| |++ ++++.. .++.|.++|+.+++.+..+
T Consensus 372 P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 372 IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999999 777 777777 5899999999999998886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-10 Score=124.56 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=163.6
Q ss_pred CCCcEEEEEEecCCCcEEEE-------EcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 346 QGSSVVSMDFHPFHHTLLVV-------GCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llas-------g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . . ....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~---~---------~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C---K---------PEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E---C---------CEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E---e---------cccCCCCCCCceEEEe
Confidence 345678999999997 6666 46678999999887765320 0 0 0011344679999999
Q ss_pred CC-CCEEEEEeCCCeEEEEEecCCCccceeeee-ec-CcCCeeEEEEecCCCceEEEEEcCC---------------CcE
Q 001178 419 PD-GNFIGVAFTKHLIHLYTYQGSNDLCQSLEI-DA-HVGGVNDLAFSYPNKQLCIVTCGDD---------------KLI 480 (1131)
Q Consensus 419 pd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~-~~-h~~~V~~l~~s~d~~~~~l~s~s~d---------------~~i 480 (1131)
++ |+++++.. .+.|.+||.+ ++........ .+ +...+.++++.++|+ ++++...+ +.|
T Consensus 80 ~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 76555544 4479999988 5532110111 11 224589999999998 56666544 567
Q ss_pred EEEeCCCceeEEecCCccCeEEEeec--ccCCccEEEE-EecCCeEEEEeCC-CCce-----eEEecCCC-ceEEEEEEc
Q 001178 481 RVWDLSGRKLFQFEGHEAPVYSVCPH--QKENIHFIFS-TAVDGKIKAWLYD-NVGS-----RVDYDAPG-LWCTTMLYS 550 (1131)
Q Consensus 481 ~iwd~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~s~dg~i~~wd~~-~~~~-----~~~~~~~~-~~v~~~~~s 550 (1131)
..||..++... +..+......++++ .+++++.++. ...++.|.+|+++ .+.. ...+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77775555433 33334456777775 1155555544 4568999999976 3321 11222232 567889999
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDN 619 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 619 (1131)
++|+..++... ++.|.+||..+++.+..+..+. ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988777653 6789999998788777776543 368889999999966555 4567899998864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-09 Score=114.72 Aligned_cols=240 Identities=11% Similarity=0.019 Sum_probs=167.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 407 DSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
.....+.+++++++|+.+++...++.|.+||.. ++.. . ..+..+...+.++++.+++. ++++...++.|..||..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-E-FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-E-EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEECCC
Confidence 345678999999999988877778999999987 4422 1 22334446799999999998 67777778899999955
Q ss_pred CceeE-EecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCcee-EEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 487 GRKLF-QFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR-VDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 487 ~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
++... .+......+.++++. +++.++++...++.|..|+.+ +... .........+..+++.++|+..++...
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~--- 165 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ--- 165 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT---
T ss_pred CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC---
Confidence 65532 222234668888875 456777777668899999987 3333 223334457899999999996655532
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEG 644 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~ 644 (1131)
.+.|..++. +++............+..+++++++..+++....+.|.+|+. +++.... ........+.+++++++|
T Consensus 166 -~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g 241 (300)
T 2qc5_A 166 -NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNS 241 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTT
T ss_pred -CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCC
Confidence 568999998 565543222122335778999999876666666778999998 4544332 222223367899999999
Q ss_pred CEEEEEECCCcEEEEec
Q 001178 645 NLLVVTTADQGIKILAN 661 (1131)
Q Consensus 645 ~~l~~~~~dg~i~iw~~ 661 (1131)
++.++...++.|..|+.
T Consensus 242 ~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEETTTTEEEEECT
T ss_pred CEEEeccCCCeEEEECC
Confidence 86666656788888876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-09 Score=122.30 Aligned_cols=253 Identities=10% Similarity=0.021 Sum_probs=165.9
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC--cEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~ 909 (1131)
-.....++++++|+++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+..++..
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence 34578999999999666665 589999999988777665543 2233 99999 788888887766 788888776544
Q ss_pred EEee----cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCC-ceEEEEcCCCcEEEEEe
Q 001178 910 KTKL----KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG-ETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 910 ~~~~----~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~-v~~v~~s~d~~~l~~~~ 984 (1131)
...+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+..... ...++|+|++..|.++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCCCCccccEEEeCCCCEEEEEe
Confidence 3333 224566889999995555555777889999999876532211110 11111111 13999999655555543
Q ss_pred --CCeEEEEeCCCcccceeeecCC------------CCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQD------------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~------------~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
.+.|+.|+.... +..+.+.. ..-.....++|+++|+++++-. .++.|+.|++.++...... +
T Consensus 286 ~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~-g 362 (409)
T 3hrp_A 286 QNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA-G 362 (409)
T ss_dssp TTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE-E
T ss_pred CCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe-C
Confidence 678999987643 23332221 0013578999999999777766 7899999998888754333 2
Q ss_pred CccccCC---CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1050 SAYMSQA---SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1050 ~~~~~~~---~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
....... .........+..+++.|+ +.++++-..+++|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100000 001112345778999995 778888888888888765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-10 Score=123.37 Aligned_cols=176 Identities=12% Similarity=0.084 Sum_probs=136.3
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCce-----------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iw 902 (1131)
..+..+++++...++++|+...+.+|++.+.. ...... +.. |++++| ++.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999997788889976543 112233 445 999999 56788888 88999999
Q ss_pred EeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
|+.+.........|..++.++.+.+.. +++++.||.|.+||++.+.... . ...+++++|||+| ..+.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~-------~~~Vs~v~WSpkG-~~vg 178 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L-------AQNVTSFDVTNSQ-LAVL 178 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E-------EESEEEEEECSSE-EEEE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c-------cCCceEEEEcCCc-eEEE
Confidence 998776666677788889988887653 8889999999999999766432 1 1579999999999 4455
Q ss_pred EeCCeEEEEeCCCccc--ceeeec------CCCCCCCeEEEEEccCCCEEEEEe
Q 001178 983 NHETQLAIYDGSKMEC--IRQWVP------QDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 983 ~~d~~i~vwd~~~~~~--~~~~~~------~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
..||.+++|+...++. .+.+.. +..|...|.+++|.+++.++++=.
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 6799999999887775 444421 113478999999999999988744
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-09 Score=115.38 Aligned_cols=229 Identities=7% Similarity=-0.023 Sum_probs=150.5
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~ 910 (1131)
..-..+..|++++..|...+ ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34456889999766666555 689999999887653 333 346799999999 7776554 3 567999998887654
Q ss_pred Eeecc----cccCeeEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 911 TKLKG----HQKHITGLAFSTNLNILVSSGSD---------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 911 ~~~~~----h~~~V~~l~~s~dg~~l~s~~~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
..... ....+..++++|+|+++++...+ ..-.+|.+............. .....++|+||+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg 160 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDH 160 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTS
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCC
Confidence 33221 12457889999999987765322 234556555322211111110 345689999999
Q ss_pred cEEEEEe--CCeEEEEeC--CCcccc--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 978 VRLLVNH--ETQLAIYDG--SKMECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 978 ~~l~~~~--d~~i~vwd~--~~~~~~--~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
+.|++.. ++.|.+|++ .++... +.+............++++++|++.++...++.|.+||.++|+.+..+....
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 9877654 688999987 455432 1222111113567899999999988887778889999999999888776432
Q ss_pred cccCCCCCCCCccccEEEEEc-CCCCCeEEEEec
Q 001178 1052 YMSQASPNSSQTVFPLVVTSH-PQEPNQLAVGLT 1084 (1131)
Q Consensus 1052 ~~~~~~~~~~~~v~~~~v~~~-p~~~~~l~s~~~ 1084 (1131)
..+.+++|. |+...++++...
T Consensus 241 ------------~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 241 ------------DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ------------SBEEEEEEESGGGCEEEEEEBC
T ss_pred ------------CCceEEEEeCCCCCEEEEEcCC
Confidence 234578998 643344455443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-09 Score=120.21 Aligned_cols=239 Identities=10% Similarity=0.000 Sum_probs=159.7
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
.....++|+|+|+ |+++...++.|++||..+++... +... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~-------------------~~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTT-------------------VHPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEE-------------------EEET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEE-------------------eecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999997 78888878999999998876543 1112 22233 9999999999988
Q ss_pred eCCC--eEEEEEecCCCccceeeeeec-CcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe-----cCCccC
Q 001178 428 FTKH--LIHLYTYQGSNDLCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-----EGHEAP 499 (1131)
Q Consensus 428 ~~d~--~i~vwd~~~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-----~~h~~~ 499 (1131)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..+.....+ .++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8766 788888877653222111122 4567889999995553 44466688999999443333333 222222
Q ss_pred e--EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC---------------CceEEEEEEccCCCEEEEEeec
Q 001178 500 V--YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP---------------GLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 500 v--~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 28888763 3466667778899999987654 2222222 13478999999999665543
Q ss_pred CCCCceEEEEeCCCCeeeEEEeccc--------------CCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFR--------------KKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
..++.|+.|+..++... .+.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02789999998777643 343320 124677999999777777777788887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-10 Score=135.36 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcC----CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCG----DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
|...+..++|||||++++.+-+. ..+|+|||+.+|+.+.. .+.+ .....++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~~~--~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PLKD--VKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EEEE--EESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------ccCC--ceeccEEEe-CC
Confidence 55678999999999965444332 35799999999986531 0111 112467899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEecCCCcc-ceeeeeec-CcCCeeEEEEecCCCceEEEEEc---CCCcEEEE
Q 001178 422 NFIGVAFTKH-------------LIHLYTYQGSNDL-CQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVW 483 (1131)
Q Consensus 422 ~~las~~~d~-------------~i~vwd~~~~~~~-~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iw 483 (1131)
+.|+.++.+. .|.+|++.++..- ........ |...+.++.|+|||+.+ +++.+ .++.|++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998774 3999998876431 12222233 45567899999999963 33333 23589999
Q ss_pred eC-CCc-eeEEecCCccCeEEEeecccCCccEEEEEecC---CeEEEEeCCCCce--eEEecCCCceEEEEEEccCCCEE
Q 001178 484 DL-SGR-KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD---GKIKAWLYDNVGS--RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 484 d~-~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
|. ++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 94 332 456666666655554 3332 23444454443 6799999987654 234444544444 899999998
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC----CcEEEEEcCCCeEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED----NQIKFWDMDNVNML 623 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~ 623 (1131)
+.... .++...|++|++..+ ..+.+.......+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 88764 233458999998754 4444443233356667778888776665544 88999999887643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-09 Score=115.82 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=153.7
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
..--.+..|+|++..++++...++.|..||..+++... + .....+.+++++|+|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~------~---------------~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR------V---------------TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE------E---------------ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE------E---------------eCCCceEEEEECCCCCEEEE
Confidence 34566889999777788888889999999998875421 1 12457999999999996554
Q ss_pred EeCCCeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEE-cC----------CCcEEEEeCCCceeEEe
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTC-GD----------DKLIRVWDLSGRKLFQF 493 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~-s~----------d~~i~iwd~~~~~~~~~ 493 (1131)
. ++.|.+||.++++.. ....... ....+.+++++|+|+ ++++. +. .+.|..+|..++... +
T Consensus 71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 3 567999999876532 2211111 123588999999998 45543 22 123444444454433 3
Q ss_pred cCCccCeEEEeecccCCccEE-EEEecCCeEEEEeCC--CCcee-----EEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 494 EGHEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYD--NVGSR-----VDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 494 ~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
..+......++|++ +++.+ ++.+.++.|..|+++ ++... ..+.........++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33444567888865 45555 556678899999874 33211 122222346789999999987766643
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEEc
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGE 608 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 608 (1131)
.+.|..||..+++.+..+.... ..+++++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~-~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPV-DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSS-SBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCC-CCceEEEEeCCCCCEEEEEcC
Confidence 6789999999899988887653 368899998 88887776654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-10 Score=124.87 Aligned_cols=269 Identities=11% Similarity=0.010 Sum_probs=170.4
Q ss_pred CcEEEEEEecCCCcEEEEEc--CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGC--GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
..+..++++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 566653 2343667766544432 111111 01235667899999999998776
Q ss_pred EEeC-----CCeEEEEEecCCCccceeeeee----cCcCCeeEEEEecCCCceEEEEEc---CCCcEEEEe-CCCceeEE
Q 001178 426 VAFT-----KHLIHLYTYQGSNDLCQSLEID----AHVGGVNDLAFSYPNKQLCIVTCG---DDKLIRVWD-LSGRKLFQ 492 (1131)
Q Consensus 426 s~~~-----d~~i~vwd~~~~~~~~~~~~~~----~h~~~V~~l~~s~d~~~~~l~s~s---~d~~i~iwd-~~~~~~~~ 492 (1131)
+-.. ++.|.+||+.+++.+... .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++....
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999987644322 221 22345789999987653 556655 688999999 66776666
Q ss_pred ecCCccCeE-EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 493 FEGHEAPVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 493 ~~~h~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+.+|..... ...+ ..++..+.+.+.++.++.|. ..+..++++|||+.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 655432111 0122 12445666777788876663 136789999999999887641 335666
Q ss_pred EeCC---CCe-----eeE--EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 572 WNES---EGA-----LKR--TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 572 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
++.. .+. ... ...++.. ....++++++|..+++...++.|.+||..+++........ .......++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 6531 111 000 1112111 3456899999998888888999999998667644333322 22356889999
Q ss_pred CCCCEEEEEECC
Q 001178 642 KEGNLLVVTTAD 653 (1131)
Q Consensus 642 p~~~~l~~~~~d 653 (1131)
+++.++++....
T Consensus 300 ~~g~l~v~~~~~ 311 (343)
T 2qe8_A 300 SDGYLYFDCNQL 311 (343)
T ss_dssp TTSCEEEEECCG
T ss_pred CCCcEEEEeCcc
Confidence 988877766544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-10 Score=122.04 Aligned_cols=197 Identities=9% Similarity=0.007 Sum_probs=130.1
Q ss_pred eEEEecCCCCEEEEEe---CCeEEE--EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec-----
Q 001178 837 PCVALSKNDSYVMSAG---GGKVSL--FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----- 906 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----- 906 (1131)
..++++|||++++++. ++.|.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 4688999999888876 356888 88877 455543221 223443555666777889988888886
Q ss_pred ceeEE----eecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCCCCCceEEEEcCC
Q 001178 907 DEVKT----KLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLP------AGKLPVGETRVQFHSD 976 (1131)
Q Consensus 907 ~~~~~----~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~v~~s~d 976 (1131)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+... .+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 44331 111122343 3 666676666666 8999999876432111111110 0111122233789999
Q ss_pred CcEEEEE-e-C--------CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCE-EEEEe-cCCcEEEEECCCCcee
Q 001178 977 QVRLLVN-H-E--------TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQL-IYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 977 ~~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~-l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
++.++++ . . +.+.++|+.+++.+..+... .....++|+|||++ +++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg----~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG----HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988874 2 2 36779999999999888765 36889999999984 55555 4899999999999999
Q ss_pred eEecC
Q 001178 1045 CRIAP 1049 (1131)
Q Consensus 1045 ~~~~~ 1049 (1131)
.++..
T Consensus 351 ~~I~v 355 (368)
T 1mda_H 351 SSVEL 355 (368)
T ss_dssp EECCC
T ss_pred EEEEC
Confidence 88874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-05 Score=94.01 Aligned_cols=532 Identities=11% Similarity=0.001 Sum_probs=284.0
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecC-CccCeE
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG-HEAPVY 501 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-h~~~v~ 501 (1131)
+|+.+ ....|+..++++.... ....+. .-..+..++|.+.+.. ++++-..++.|+.++..|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~-~~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN-VAIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE-EECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcc-eEEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 4567999999865421 111222 2346889999997764 56666678899999866654443332 224566
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeE
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 581 (1131)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+.+.. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3355566667789999998765544433344446789999997667766542 125678888876443333
Q ss_pred EEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEe
Q 001178 582 TYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 582 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~ 660 (1131)
... .......++++++++.|+.+. ..+.|..+++..... ..+... ......+++.. +.++++-...+.|...|
T Consensus 161 l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 332 233577899999877777665 467899999876544 233222 12345777765 34444444577888888
Q ss_pred cCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCC
Q 001178 661 NADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDK 740 (1131)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~ 740 (1131)
..++.. ...+...... .. .+..+.+. +.........- .+.
T Consensus 235 k~tg~~-~~~l~~~~~~----------p~--~i~v~~~~--------~q~~~n~C~~~-------------------ng~ 274 (628)
T 4a0p_A 235 KTSGQN-RTIIQGHLDY----------VM--DILVFHSS--------RQSGWNECASS-------------------NGH 274 (628)
T ss_dssp TTTCCS-CEEEECSCCS----------CC--EEEEECGG--------GSCCCCTTTTT-------------------GGG
T ss_pred CCCCCc-eEEEecCCCC----------cc--eeeeeeec--------ccccceEeccC-------------------CCC
Confidence 666522 1111111000 00 00111111 00000000000 000
Q ss_pred CcceeeecccCCceeEEEEcCCC-CCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC
Q 001178 741 TKPWELTEIVDPLQCRVVAMPES-TDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS 819 (1131)
Q Consensus 741 v~~w~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~ 819 (1131)
....-+........| ..+.. .-......+. +....|+.+ ....|+-..+....
T Consensus 275 C~~~C~~~~~~~~~C---~C~~g~~l~~d~~~C~---~~~~~Ll~s-~~~~i~~i~l~~~~------------------- 328 (628)
T 4a0p_A 275 CSHLCLAVPVGGFVC---GCPAHYSLNADNRTCS---APTTFLLFS-QKSAINRMVIDEQQ------------------- 328 (628)
T ss_dssp CSSEEEEETTTEEEE---ECSTTCEECTTSSCEE---CCSSEEEEE-ETTEEEEECCCTTC-------------------
T ss_pred cchhhhcCCCCCeeE---EcCCCcEecccCCcCc---cccceeeee-ccceEEEEeccccc-------------------
Confidence 000000000000000 00000 0000111111 112223222 22233322221100
Q ss_pred CCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC------CCCCeeEEEEeCCCCcEEE
Q 001178 820 NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIA 891 (1131)
Q Consensus 820 ~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la 891 (1131)
..-.. ++-..-..+..++|.+....|..+. .+.|+.++.........+.. ....+..+++...++++..
T Consensus 329 -~~~~~--l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~ 405 (628)
T 4a0p_A 329 -SPDII--LPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405 (628)
T ss_dssp -CCCEE--CCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred -CceEE--EEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence 00000 1111234577899999888888776 57898888865443333322 2346889999984456666
Q ss_pred EEeCCCcEEEEEeecceeEEee-cccccCeeEEEEcc-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCCCCC
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKL-KGHQKHITGLAFST-NLNILVSSGSDA--QLIFWNTDTWEKRKSIAIQLPAGKLPVG 967 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~s~-dg~~l~s~~~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 967 (1131)
+-+..+.|.+.+++ |+....+ ........+|++.| .|.++.+-.... .|...+++..... .. .. . .-..
T Consensus 406 td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~l-~~---~-~l~~ 478 (628)
T 4a0p_A 406 TCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-VL-FF---S-GLSK 478 (628)
T ss_dssp EETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-EE-EC---S-SCSC
T ss_pred EcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-EE-Ee---c-cCCC
Confidence 77778889999976 4433333 33456689999999 555555533332 5666666653221 11 11 1 1145
Q ss_pred ceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCcee
Q 001178 968 ETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLR 1044 (1131)
Q Consensus 968 v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~ 1044 (1131)
...+++++++..|..++ .+.|..++++. ...+.+... ......++++.. + .|+.+. ..+.|...|..+|+..
T Consensus 479 P~gla~D~~~~~LYw~D~~~~~I~~~~~dG-~~r~~~~~~--~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 479 PIALALDSRLGKLFWADSDLRRIESSDLSG-ANRIVLEDS--NILQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--SCSCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCC
T ss_pred ccEEEEeCCCCEEEEEeCCCCEEEEEeCCC-CceEEEEcC--CCCCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCc
Confidence 68899999988888765 47899999864 334444321 134567888754 3 455555 5578888888877755
Q ss_pred eEec
Q 001178 1045 CRIA 1048 (1131)
Q Consensus 1045 ~~~~ 1048 (1131)
..+.
T Consensus 554 ~~i~ 557 (628)
T 4a0p_A 554 TKVQ 557 (628)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-09 Score=113.27 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=149.7
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF 428 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~ 428 (1131)
-..+.+|+|+++.+++++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 456789999877788888888999999998775421 1 123579999999999987765
Q ss_pred CCCeEEEEEecCCCccceeeeeec-C-cCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEecCCccCe
Q 001178 429 TKHLIHLYTYQGSNDLCQSLEIDA-H-VGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGHEAPV 500 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~~~~~~~~~~~-h-~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~h~~~v 500 (1131)
.+ .|.+||..+++.. ....... + ...+.+++++|+|+ ++++... .+.|..+| +++ +..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~-~~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGK-VTKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTE-EEEEEEEESSE
T ss_pred CC-CEEEEECCCCcEE-EEeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCc-EEEeeCCCccc
Confidence 33 4999999887632 1111111 1 23589999999998 4554432 24555555 444 33333333456
Q ss_pred EEEeecccCCccEEE-EEecCCeEEEEeCC--CC-ce-----eEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 501 YSVCPHQKENIHFIF-STAVDGKIKAWLYD--NV-GS-----RVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~-s~s~dg~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
..++|++ +++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888854 555554 44567899999986 43 21 1122223446788999999987766542 568999
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEe-CCCCEEEEEEcC
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFD-TTRNRILAAGED 609 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 609 (1131)
||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~~~-~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPG-KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEECSC-SBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEECCC-CCcEEEEEecCCCCEEEEEecC
Confidence 998 577777776543 368899998 888877665543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-09 Score=115.46 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+.......+|+|+|+++++++..++.|..|+. +++.. .+..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~--------------------~~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD--------------------VLLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE--------------------EEEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE--------------------EEeCCCCccceeeECCCCCEE
Confidence 355677899999999888899988999999998 44421 123345678999999999977
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecC-cCCeeEEEEecCCCceEEEE----EcC-------------CCcEEEEeC-
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVT----CGD-------------DKLIRVWDL- 485 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s----~s~-------------d~~i~iwd~- 485 (1131)
++...++.|.+|+.+ ++.........+. ...+.++++.++|+ +.+| |.. .+.|..||.
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 766666889999986 4421111111111 23577899999998 6665 332 256777884
Q ss_pred CCceeEEecCCccCeEEEeecccCCccEEEEEecC------CeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEE
Q 001178 486 SGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD------GKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 486 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
+++.... . .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~-~-~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRM-A-DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEE-E-EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEE-e-cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 5554333 2 445567888854 55667666554 7899999875431 11111122334578899999955
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEE
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 616 (1131)
++. .+.|.+|+. +++.+..+.... .+..++|+++++.|+.++.++ ++.++
T Consensus 254 v~~------~~gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 254 SSS------GTGVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp ECC------SSEEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred Eec------CCcEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 443 234999997 577777776543 477889999998888887754 44433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.3e-10 Score=122.01 Aligned_cols=271 Identities=9% Similarity=0.029 Sum_probs=175.0
Q ss_pred cceEEEEeecCCceEEEeee--cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 768 SKVARLLYTNSGIGILALWS--NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
.....++++++|+.+++... ++.+++|.+.. +... ...-|.. ....+-..+..++++++|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~---~~p~~~~---------~~~~~~~~p~gv~~d~~g 78 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI---PFPPQSG---------NAIITFDTVLGIKSDGNG 78 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE---ESCCCCS---------SCCCCCSCEEEEEECSSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee---cCCCccc---------CcccceeEeeEEEEcCCC
Confidence 46788999999998777532 34367776641 1110 0000000 011356788999999999
Q ss_pred CEEEEEe------CCeEEEEECCCceeEEEEeCC------CCCeeEEEEeCCCCcEEEEEe---CCCcEEEEEeecceeE
Q 001178 846 SYVMSAG------GGKVSLFNMMNFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGM---EDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 846 ~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~I~iwd~~~~~~~ 910 (1131)
++.++-. ++.|.+||+.+++.+..+..+ ...+..++++++++.++++.. .++.|.+||+.+++..
T Consensus 79 ~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 79 IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 8666543 378999999999987776532 235689999984555556655 6789999999988877
Q ss_pred EeecccccCee-EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-C-Ce
Q 001178 911 TKLKGHQKHIT-GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-E-TQ 987 (1131)
Q Consensus 911 ~~~~~h~~~V~-~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d-~~ 987 (1131)
..+.+|..... ...++++|..+.+.+.|+.++.|. ..+..++|+|||+.|+++. . ..
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~~ 218 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHSTS 218 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCSE
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCCe
Confidence 77766533211 145666787888888888876653 2345799999999888764 2 34
Q ss_pred EEEEeCCC---c-----cccee--eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCC
Q 001178 988 LAIYDGSK---M-----ECIRQ--WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 988 i~vwd~~~---~-----~~~~~--~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
++.++... + +.... ..++ ......++++++|.++++...++.|.+||..+++........
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~------- 288 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKIERYSE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE------- 288 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTCEEEEE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-------
T ss_pred EEEEEHHHhcCCCCChhhhhcceEeccc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-------
Confidence 55554321 1 11111 1112 235567899999999988888999999998566543222211
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
....+..++|.+ ++.++++.+..+.+.+|
T Consensus 289 ----~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 ----KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ----GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ----ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 123466789888 56788887765554333
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=133.97 Aligned_cols=244 Identities=12% Similarity=0.148 Sum_probs=157.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-----CCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC--
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAF-----TKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK-- 478 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~-- 478 (1131)
.+|...+..++|||||++||.+. .+.+|++||+.+++.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 35667899999999999998643 235799999999875431 1211 113578999 999 466665553
Q ss_pred -----------cEEEEe-CCCc----eeEEecC-CccCeEEEeecccCCccEEEEEec----CCeEEEEeCCCCc-eeEE
Q 001178 479 -----------LIRVWD-LSGR----KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV----DGKIKAWLYDNVG-SRVD 536 (1131)
Q Consensus 479 -----------~i~iwd-~~~~----~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~~wd~~~~~-~~~~ 536 (1131)
.|++|+ -++. .+..... |......+.++ +++++|+.... ++.|+++|+++.. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT--EDDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 3332 2333333 44556777774 56676654432 3589999998764 3344
Q ss_pred ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCCCEEEEEEcCC---c
Q 001178 537 YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDN---Q 611 (1131)
Q Consensus 537 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~ 611 (1131)
+..+....... ++++|..|+..+......+.|..+++.++.. .+.+..+....+ .|++++++|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887777654322357899999987654 345555554333 7889998887766543 6
Q ss_pred EEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC----CcEEEEecCCC
Q 001178 612 IKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD----QGIKILANADG 664 (1131)
Q Consensus 612 i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d----g~i~iw~~~~~ 664 (1131)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987554 44444322 1245667778888777666544 78999988665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-08 Score=121.69 Aligned_cols=193 Identities=9% Similarity=0.103 Sum_probs=136.8
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------eeEEEEeCCCCcEEEEEeCCC---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGMEDS--- 897 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 897 (1131)
++.|+.||..+++.+.++...... ...++++| ++.++++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 578888999998888776542211 13578888 677777777664
Q ss_pred ----------------cEEEEEeecceeEEeecc--cc-------cCeeEEEEccCC---CEEEEEeCCCcEEEEEcCCC
Q 001178 898 ----------------TIQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNL---NILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 898 ----------------~I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg---~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
.|..+|..+|+.+-.++. |. ....-+....+| ..++.++.+|.|+++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 499999999998876553 31 122233444577 68999999999999999999
Q ss_pred ceeeeeeeecCC--------C--------------------CC-CCCceEEEEcCCCcEEEEEe----------------
Q 001178 950 EKRKSIAIQLPA--------G--------------------KL-PVGETRVQFHSDQVRLLVNH---------------- 984 (1131)
Q Consensus 950 ~~~~~~~~~~~~--------~--------------------~~-~~~v~~v~~s~d~~~l~~~~---------------- 984 (1131)
+.+......... + .. ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 876543321000 0 00 00112578999988887742
Q ss_pred ----------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEE
Q 001178 985 ----------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036 (1131)
Q Consensus 985 ----------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vw 1036 (1131)
.+.|..||+.+++.+..+... .++.+..++.++.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 167999999999988776543 345556677888899999999999999
Q ss_pred ECCCCceeeEecCC
Q 001178 1037 DADSLRLRCRIAPS 1050 (1131)
Q Consensus 1037 d~~~~~~~~~~~~~ 1050 (1131)
|..+|+.+..+...
T Consensus 504 D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 504 HAATGEKLWEAPTG 517 (677)
T ss_dssp ETTTCCEEEEEECS
T ss_pred ECCCCceeeeeeCC
Confidence 99999999988753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=123.31 Aligned_cols=193 Identities=16% Similarity=0.189 Sum_probs=134.3
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeeEEEEeCCCCcEEEEEeCCCc---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 898 (1131)
+|.|..||..+|+.+-.+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 5678888888888877765210 0112578898 6778888888764
Q ss_pred ----------------EEEEEeecceeEEeecc--cc-------cCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 001178 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 899 ----------------I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
|..||.++|+.+-.++. |. .+..-.....+|+ .++.++.+|.++++|..+++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999998876653 22 1222223333665 78899999999999999998
Q ss_pred eeeeeeeec------------------------CCCC---------CCCCceEEEEcCCCcEEEEEe-------------
Q 001178 951 KRKSIAIQL------------------------PAGK---------LPVGETRVQFHSDQVRLLVNH------------- 984 (1131)
Q Consensus 951 ~~~~~~~~~------------------------~~~~---------~~~~v~~v~~s~d~~~l~~~~------------- 984 (1131)
.+....... .... -...-..++|+|+..++++..
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 753222110 0000 001122478999988777641
Q ss_pred ---------------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 985 ---------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 985 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
++.|+.||+.+++.+-.+..+ .++....++..+.++++++.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 367999999999988777654 2334446677888999999999
Q ss_pred cEEEEECCCCceeeEecCC
Q 001178 1032 SIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.||.++|+.+.++...
T Consensus 497 ~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred cEEEEECCCCccceeeeCC
Confidence 9999999999999888743
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-08 Score=110.55 Aligned_cols=233 Identities=12% Similarity=0.083 Sum_probs=152.9
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 407 DSSISVSRVAWSPDGN-FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
.........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+||.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA 114 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence 4455678899999999 5666667889999988 443 22 3445667799999999998 6666666788999996
Q ss_pred CCceeEEecCC-----ccCeEEEeecccCCccEEEE----Eec-------------CCeEEEEeCCCCceeEEecCCCce
Q 001178 486 SGRKLFQFEGH-----EAPVYSVCPHQKENIHFIFS----TAV-------------DGKIKAWLYDNVGSRVDYDAPGLW 543 (1131)
Q Consensus 486 ~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~~wd~~~~~~~~~~~~~~~~ 543 (1131)
.++.. .+..+ ...+..+++. ++|.+.++ |.. .+.|..||.++++..... ....
T Consensus 115 ~g~~~-~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 DGQAH-LLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TSCEE-EEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CCCEE-EEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 56543 22211 1235667774 46677775 332 256777776555443322 3335
Q ss_pred EEEEEEccCCCEEEEEeecC--CCCceEEEEeCCCCeee--EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 544 CTTMLYSADGSRLFSCGTSK--EGDSHLVEWNESEGALK--RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
...++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+ |.++..+ .|.+|+. .
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-C
Confidence 67899999999888775310 01268999998765421 122211222345688999998 4444444 4999998 5
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
++.+..+.... .+.+++|+++++.|++++.++..+
T Consensus 267 g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 66666666543 478999999999998888765433
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.2e-10 Score=121.80 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=134.7
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCC--C-CCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQ--N-PSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~--~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
..+..+++++....+++++.++ +.+|++..... . ..+. .+ ..... .+.. |..++| |
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~-----------~~--~~~~~----~lp~-V~~l~f--d 96 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP-----------LT--FKWEK----EIPD-VIFVCF--H 96 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC-----------CC--CSEEE----ECTT-EEEEEE--E
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc-----------cc--ceEEe----eCCC-eeEEEE--C
Confidence 3688899999999999888874 45587653210 0 0000 00 00000 2345 999999 9
Q ss_pred CCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEE
Q 001178 845 DSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA 924 (1131)
Q Consensus 845 g~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 924 (1131)
+++|+++.++.|++||+.+.........+...+.++.+.+ .. +|+++.||.|.+||+.++.... +...|+|++
T Consensus 97 ~~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~ 169 (388)
T 1xip_A 97 GDQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-NT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD 169 (388)
T ss_dssp TTEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-SE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred CCEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-CC--EEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence 9999999889999999988776666667777888888776 32 8889999999999999877543 556899999
Q ss_pred EccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec----CC-CCCCCCceEEEEcCCCcEEEE
Q 001178 925 FSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQL----PA-GKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 925 ~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~----~~-~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
|||+| ++.|..||++++|+.+.++......+.. .. ..+...+.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 7889999999999998866421111211 11 012378999999999999987
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.2e-08 Score=106.89 Aligned_cols=223 Identities=7% Similarity=0.028 Sum_probs=143.6
Q ss_pred CeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 835 VVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+.+|+|++..++..+ ++.|..||..+++... +. ....+.++++++ +++++++. .+ .|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 346789999866555544 6899999998876543 33 245799999999 78777654 44 499999887765432
Q ss_pred ecc----cccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 913 LKG----HQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 913 ~~~----h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
... ....+.+++++|+|+++++... .+.|..++ +++... .... ......++|+||++.+++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~------~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD------ISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE------ESSEEEEEECTTSCEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC------CcccCCeEEcCCCCEEEE
Confidence 221 1235889999999998776542 24455555 333211 1110 024568999999998766
Q ss_pred Ee--CCeEEEEeCC--Cc-ccc--eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccC
Q 001178 983 NH--ETQLAIYDGS--KM-ECI--RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 983 ~~--d~~i~vwd~~--~~-~~~--~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
+. ++.|.+|++. ++ ... ..+.........+..++++++|.++++...++.|.+|+. +++.+..+....
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~---- 270 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG---- 270 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC----
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC----
Confidence 54 6789999986 55 321 122211111346788999999998887766789999998 576666554221
Q ss_pred CCCCCCCccccEEEEEc-CCCCCeE-EEEecC
Q 001178 1056 ASPNSSQTVFPLVVTSH-PQEPNQL-AVGLTD 1085 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~-p~~~~~l-~s~~~D 1085 (1131)
..+.+++|. | ++..| ++...+
T Consensus 271 --------~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 271 --------KQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp --------SBEEEEEEEST-TSCEEEEEEBCT
T ss_pred --------CCcEEEEEecC-CCCEEEEEecCC
Confidence 124578887 6 44444 444444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-05 Score=88.04 Aligned_cols=525 Identities=9% Similarity=0.021 Sum_probs=268.7
Q ss_pred CCCeEEEEEecCCC-ccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCce--eEEecCCccCeEEEee
Q 001178 429 TKHLIHLYTYQGSN-DLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK--LFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 429 ~d~~i~vwd~~~~~-~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~h~~~v~~~~~ 505 (1131)
....|+..++.+.. ... .+...-.....++|++.+.. ++++-...+.|..++..|.. ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34568888887642 111 12223445789999997764 45555567788888865542 2223333356788888
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
.+. ++++.++-...+.|.+.+++.................+++.|.+.+|+.+..+ ..+.|...++. |.....+..
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~d-G~~~~~l~~ 167 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMD-GSSRFIIIN 167 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETT-SCSCEEEEC
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECC-CCceEEEEe
Confidence 653 33566666778999999988655444443444457789999987777666421 24577777765 443333332
Q ss_pred ccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 586 FRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
........++++++++.|+.+. ..+.|...++............ ......+++..+ .+.++-...+.|...|..++
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 2333567899999877776654 4677888888765443333211 113467777665 34444445678888887666
Q ss_pred chhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcce
Q 001178 665 LRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPW 744 (1131)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w 744 (1131)
.. ...+...... . ..+..+.|... ... ..+...-+++-. .+
T Consensus 245 ~~-~~~i~~~~~~----------p--~~i~v~~~~~q------p~~-~n~C~~~ng~Cs-------~l------------ 285 (619)
T 3s94_A 245 EG-LREIHSDIFS----------P--MDIHAFSQQRQ------PNA-TNPCGIDNGGCS-------HL------------ 285 (619)
T ss_dssp CC-CEECCSCCCC----------C--SEEEECCGGGS------CCC-CCTTTTTGGGCS-------SE------------
T ss_pred cc-cEEEecCCCC----------C--cEEEEEccccC------CCc-cccccCCCCccc-------ce------------
Confidence 32 1111110000 0 00111222100 000 000000000000 00
Q ss_pred eeeccc-CCceeEEEEcCCCC-CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCc
Q 001178 745 ELTEIV-DPLQCRVVAMPEST-DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGL 822 (1131)
Q Consensus 745 ~~~~~~-~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 822 (1131)
-+.... ....|. -+..- -......+. +....++..+..+.|+..++......
T Consensus 286 Cl~~~~~~~~~C~---C~~g~~l~~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~~-------------------- 339 (619)
T 3s94_A 286 CLMSPVKPFYQCA---CPTGVKLLENGKTCK---DGATELLLLARRTDLRRISLDTPDFT-------------------- 339 (619)
T ss_dssp EEECSSTTSEEEE---CCTTCCBCTTSSCBC---SSCSEEEEEEESSCEEEEESSSTTCC--------------------
T ss_pred EECCCCCCCceEe---CCchheecccCcccC---CCCceEEEEEcccceEEEecCCCccc--------------------
Confidence 000000 000000 00000 000000000 00112222233344544443321110
Q ss_pred ccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEE
Q 001178 823 LMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQ 900 (1131)
Q Consensus 823 ~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~ 900 (1131)
.....+ ..-..+..++|.+.+..|..++ .+.|+.+++.+......+...-.....+++.+.++++..+-+..+.|.
T Consensus 340 ~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~ 417 (619)
T 3s94_A 340 DIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIE 417 (619)
T ss_dssp CEECCC--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeEEec--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEE
Confidence 000011 1234567899998777777666 588999998765444444433456788999874566666666778899
Q ss_pred EEEeecceeEEeecccccCeeEEEEccCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 901 IYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG--SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
+.+++.......+...-....+|++.|....|.... ....|...+++..... . .. .. .-.....+++++++.
T Consensus 418 v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~-~-l~---~~-~l~~P~GlalD~~~~ 491 (619)
T 3s94_A 418 VTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV-V-LV---NT-SLGWPNGLALDYDEG 491 (619)
T ss_dssp EEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-EE---CS-SCSCEEEEEEETTTT
T ss_pred EEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE-E-EE---eC-CCCCCeeeEEcccCC
Confidence 998875433222333345678999999744444433 2356777776653321 1 11 11 114567899999888
Q ss_pred EEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCc
Q 001178 979 RLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLR 1042 (1131)
Q Consensus 979 ~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~ 1042 (1131)
.|..++ .+.|..+++........+... -....++++..+ +|+.+. ..+.|...+..+|.
T Consensus 492 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~---l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 492 KIYWGDAKTDKIEVMNTDGTGRRVLVEDK---IPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEEECC---CCSSCCEEEETT--EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEEECCCCEEEEEecCCCceEEEeccC---CCCcEEEEEECC--EEEEeecCCCeEEEEEcCCCc
Confidence 888765 567888888643322222222 122345555433 566655 44677777877774
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.6e-08 Score=117.02 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=59.0
Q ss_pred CCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcC
Q 001178 896 DSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHS 975 (1131)
Q Consensus 896 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 975 (1131)
+|.|..||+.+++.+-..+.+. ++..-.++..+.++++++.|+.|+.||.++++.+..... ..+ ....-+.|..
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~--~~~---~~~~p~ty~~ 527 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA--ASG---VMAAPVTYSV 527 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSC---CCSCCEEEEE
T ss_pred ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC--CCC---cccCceEEEE
Confidence 3789999999999888776553 344446667788999999999999999999987655433 222 2233467778
Q ss_pred CCcEEEE
Q 001178 976 DQVRLLV 982 (1131)
Q Consensus 976 d~~~l~~ 982 (1131)
+|+..++
T Consensus 528 ~G~qyv~ 534 (689)
T 1yiq_A 528 DGEQYVT 534 (689)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8886554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=3.4e-08 Score=119.32 Aligned_cols=351 Identities=12% Similarity=0.129 Sum_probs=201.4
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC----------ceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeE
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK----------SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 622 (1131)
+..+++++. ++.|+.+|..+|+.+-.+...... ....+++ ++..+++++.|+.|+.+|..+|+.
T Consensus 77 ~g~vyv~~~----~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSAS----WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECG----GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECC----CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 445655554 688999999999998887643211 0112333 457899999999999999999999
Q ss_pred EEEEecc-CCC--CCcc-eEEEcCCCCEEEEEEC------CCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 623 LTSTEAE-GGL--PSLP-RLRFNKEGNLLVVTTA------DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 623 ~~~~~~~-~~~--~~i~-~v~~sp~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
+...... ... ..+. .... .+..+++++. ++.|+.||..++....+ +........
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~-~~~~~~~~~------------- 214 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR-WFSVPGDPS------------- 214 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE-EESSCCCTT-------------
T ss_pred EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE-eccCCCCcc-------------
Confidence 9887754 110 0111 1111 2345555543 68999999998843322 111000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
..++....+.....|.... .... . .........
T Consensus 215 -------------------------------------~~~~~~~~~~g~~~w~~~g--~~~~-----~---~~g~~~w~~ 247 (677)
T 1kb0_A 215 -------------------------------------KPFEDESMKRAARTWDPSG--KWWE-----A---GGGGTMWDS 247 (677)
T ss_dssp -------------------------------------SCCSSHHHHHHHTTSCGGG--CHHH-----H---CEECCCCSC
T ss_pred -------------------------------------ccccccccccccccccccC--ceeE-----e---CCCcccccc
Confidence 0000000000011121000 0000 0 001122235
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCC-------CCCeeEEEecCCC
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA-------EDVVPCVALSKND 845 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-------~~~i~~l~~s~dg 845 (1131)
+++++++..++++..++.. |....... ..+.......+..+|..+|+.....-...| ......+....+|
T Consensus 248 ~~~d~~~~~vy~~~~~~~~--w~~~~~~~-~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 248 MTFDAELNTMYVGTGNGSP--WSHKVRSP-KGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp EEEETTTTEEEEECCCEES--SCHHHHST-TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred eeEcCCCCEEEEECCCCcc--ccCCCCCc-cCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 7888888888888776543 33221110 001111112345567777766553221111 1222333444577
Q ss_pred ---CEEEEEe-CCeEEEEECCCceeEEEEeCCCC----------C-e------------------------eEEEEeCCC
Q 001178 846 ---SYVMSAG-GGKVSLFNMMNFKVMTTFMSPPP----------A-S------------------------TFLAFHPQD 886 (1131)
Q Consensus 846 ---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~----------~-i------------------------~~l~~s~~~ 886 (1131)
+.++.++ +|.|.++|..+++.+..+..... . + ..++|+| +
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-Q 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-T
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-C
Confidence 5777777 89999999999999877652210 0 1 1568899 6
Q ss_pred CcEEEEEeC-------------------------------------------CCcEEEEEeecceeEEeecccccCeeEE
Q 001178 887 NNIIAIGME-------------------------------------------DSTIQIYNVRVDEVKTKLKGHQKHITGL 923 (1131)
Q Consensus 887 ~~~la~g~~-------------------------------------------dg~I~iwd~~~~~~~~~~~~h~~~V~~l 923 (1131)
+.++++... .|.|..||+.+++.+-... +..++.+.
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g 482 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGG 482 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCC
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCc
Confidence 666666543 2789999999999887766 44456666
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 924 AFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 924 ~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
.++.++..++.++.||.+++||..+++.+...... .+ ....-+.+..+|+.+++
T Consensus 483 ~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~--~~---~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 483 TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TG---VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SC---CCSCCEEEEETTEEEEE
T ss_pred ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC--CC---cccCCEEEEeCCEEEEE
Confidence 77788889999999999999999999876655432 22 23345666788875554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-08 Score=110.56 Aligned_cols=296 Identities=7% Similarity=-0.128 Sum_probs=182.7
Q ss_pred cEEEEEecCC----eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCCeeeE
Q 001178 512 HFIFSTAVDG----KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGALKR 581 (1131)
Q Consensus 512 ~~l~s~s~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~~~~~ 581 (1131)
...++...++ +|.++|.++.+.+..+.....+ .+.++|||++++++... +..++.|.+||..+++.+.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3444444455 8889999999888887766666 79999999999988631 0126789999999999999
Q ss_pred EEeccc------CCceEEEEEeCCCCEEEEEEc--CCcEEE--EEcCCCeEEEEEeccCCCCCcceEEEcCCC-CEEEEE
Q 001178 582 TYIGFR------KKSAGVVQFDTTRNRILAAGE--DNQIKF--WDMDNVNMLTSTEAEGGLPSLPRLRFNKEG-NLLVVT 650 (1131)
Q Consensus 582 ~~~~~~------~~~v~~~~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~i~~v~~sp~~-~~l~~~ 650 (1131)
.+.... ......+.++|||++++++.. +..+.+ +|..+ +..+...+. ..+.|++ ..+++.
T Consensus 111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~------~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC------FHIHPGAAATHYLG 181 (368)
T ss_dssp EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC------CCCEEEETTEEECC
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc------eEEccCCCeEEEEE
Confidence 886431 113446899999999998874 467888 88877 455543221 1123433 344556
Q ss_pred ECCCcEEEEecCC----CchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCcccc
Q 001178 651 TADQGIKILANAD----GLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAAR 726 (1131)
Q Consensus 651 ~~dg~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 726 (1131)
+.||.+.+.++.+ ..+....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~-------------------------------------------------------- 205 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQ-------------------------------------------------------- 205 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCC--------------------------------------------------------
T ss_pred cCCCCEEEEECccccccCCeEEEE--------------------------------------------------------
Confidence 6788887777755 1000000
Q ss_pred CCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCc
Q 001178 727 GIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGK 806 (1131)
Q Consensus 727 ~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~ 806 (1131)
.+ ..+.+. ..+. + ++++..++..+. +.+.+.|+......
T Consensus 206 ------------~t-~~i~vg-------------------~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~---- 244 (368)
T 1mda_H 206 ------------CT-GAQNCS-------------------SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT---- 244 (368)
T ss_dssp ------------SC-TTSCBC-------------------SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----
T ss_pred ------------ee-eeeeCC-------------------CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----
Confidence 00 001100 0111 2 455555555555 67766665321100
Q ss_pred cceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--C-C-------eEEEEECCCceeEEEEeCCCCC
Q 001178 807 ATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--G-G-------KVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 807 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--d-g-------~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
....|........... ........+++++|++.+.++. . + .+.++|+.+++.+.++.... .
T Consensus 245 -----v~~~~~~~~~~~~~~~---~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~ 315 (368)
T 1mda_H 245 -----MKAAIDGNESGRKADN---FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D 315 (368)
T ss_dssp -----EECCCCSSCTHHHHTT---EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E
T ss_pred -----EEEEEEeccccccccc---cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-C
Confidence 0011222211100000 0111222368999999888653 2 2 57799999999998876433 5
Q ss_pred eeEEEEeCCCCc-EEEEEe-CCCcEEEEEeecceeEEeecccccCeeEEEEc
Q 001178 877 STFLAFHPQDNN-IIAIGM-EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926 (1131)
Q Consensus 877 i~~l~~s~~~~~-~la~g~-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 926 (1131)
...++|+| |++ ++++.. .+++|.++|+.+++.+..+..... -..+++.
T Consensus 316 p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 316 SDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred cceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 88999999 565 666666 599999999999999999886654 3455554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-08 Score=109.04 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=98.3
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCc---------cCeE-EEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHE---------APVY-SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~---------~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
.++.++.++.|..+| .+|+.+..+.... ..+. .+.. ++..++.++.++.|..+|.++++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 477788889999999 7899887665421 2222 2222 23578888999999999999988887665
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc----eEEEEEeCCCCEEEEEEcCCcEEE
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS----AGVVQFDTTRNRILAAGEDNQIKF 614 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~i 614 (1131)
............ +..+++++. ++.|+.+|..+|+.+..+....... ....... +..+++++.++.|..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE--CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543321112222 345666554 7899999999999887776432110 0112222 457888888999999
Q ss_pred EEcCCCeEEEEEec
Q 001178 615 WDMDNVNMLTSTEA 628 (1131)
Q Consensus 615 wd~~~~~~~~~~~~ 628 (1131)
+|..+++.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999988776654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.4e-08 Score=105.05 Aligned_cols=237 Identities=11% Similarity=0.141 Sum_probs=148.9
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEECCCc----eeEEEEe-------CCCCCeeEEEEeCCCCcEEEEEeCC------Cc
Q 001178 840 ALS--KNDSYVMSAG--GGKVSLFNMMNF----KVMTTFM-------SPPPASTFLAFHPQDNNIIAIGMED------ST 898 (1131)
Q Consensus 840 ~~s--~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~d------g~ 898 (1131)
.++ +++++|++.+ ++.|.|+|+.+. +..+++. ........+..+| ++ ++++...+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 446 8899999887 688999999866 6666663 1122456788899 77 66666555 78
Q ss_pred EEEEEeecceeEEeecccccC---eeEEEEccCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001178 899 IQIYNVRVDEVKTKLKGHQKH---ITGLAFSTNLNILVSSG-------------------SDAQLIFWNTDTWEKRKSIA 956 (1131)
Q Consensus 899 I~iwd~~~~~~~~~~~~h~~~---V~~l~~s~dg~~l~s~~-------------------~Dg~v~lwd~~~~~~~~~~~ 956 (1131)
|.++|..+.+.+..+....++ -..+.|+|+++.+++.. .+.+|.+||+.+++......
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 999999999999888633222 34588899999998885 36789999999865443322
Q ss_pred eecCCCCCCCCceEEEE--cCCCcEEEEEe-------CCeEEEEeCCCccc--ceee--ecC-------------CCCCC
Q 001178 957 IQLPAGKLPVGETRVQF--HSDQVRLLVNH-------ETQLAIYDGSKMEC--IRQW--VPQ-------------DVLSS 1010 (1131)
Q Consensus 957 ~~~~~~~~~~~v~~v~~--s~d~~~l~~~~-------d~~i~vwd~~~~~~--~~~~--~~~-------------~~~~~ 1010 (1131)
. . ........+.| +|+++++.++. ++.|.+|..+.+.. .+.+ ... .....
T Consensus 246 v--g--~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 246 L--G--EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp S--C--TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred c--C--CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 2 1 11123344545 99999887743 45676655443321 1110 000 00023
Q ss_pred CeEEEEEccCCCEEEEEec-CCcEEEEECCC---CceeeEecCCccc--cCCCCCCCCccccEEEEEcCCCCCeEEEEe
Q 001178 1011 PISSAAYSCNSQLIYATFT-DGSIGVFDADS---LRLRCRIAPSAYM--SQASPNSSQTVFPLVVTSHPQEPNQLAVGL 1083 (1131)
Q Consensus 1011 ~v~~i~~s~dg~~l~s~~~-dg~i~vwd~~~---~~~~~~~~~~~~~--~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~ 1083 (1131)
....|.+|+||++|.++.. .+.|.+||+.. .+++..+...... +.+.........+-.+.++| |+++|.++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 5788999999999999885 68999999863 3444444322100 00000000001244588888 667777777
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=109.22 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=179.9
Q ss_pred EEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec
Q 001178 459 DLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD 538 (1131)
Q Consensus 459 ~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 538 (1131)
++.+..++. +..++.++.|..||.+++.+..+......+.++.. ..++ .++.++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 445555665 67777888899999777776665544444455554 2343 45555555 888875 444433332
Q ss_pred CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC
Q 001178 539 APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 539 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
..........+. +..+..++. ++.|..+|.. ++....+..... .+.++...+++. ++.++.++.|..+|..
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 222222223333 445555543 6789999988 777666654332 455566666665 6667788999999998
Q ss_pred CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
++.+........ .+.++...+++.+.+ ++ +.|..++ .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 777666654432 567777777776444 33 6677776 33310
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
+|...
T Consensus 207 --------------------------------------------~~~~~------------------------------- 211 (330)
T 3hxj_A 207 --------------------------------------------KWNFY------------------------------- 211 (330)
T ss_dssp --------------------------------------------EEEEC-------------------------------
T ss_pred --------------------------------------------EEEEc-------------------------------
Confidence 00000
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSL 858 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~v 858 (1131)
.....+.+++..++|.+.+...++.|..
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 212 ----------------------------------------------------AGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp ----------------------------------------------------CSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred ----------------------------------------------------cCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 0012234455666665555544667777
Q ss_pred EECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCC
Q 001178 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 859 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
+|. +++.+..+......+..+.+.+ ++. |.+++.+|.|..+|. +++.+..+......+.++...++|. |..++.+
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGN-TDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECT-TSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTT
T ss_pred ECC-CCCEeEEeeCCCCccccceEcC-CCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCC
Confidence 764 4455555554444445566655 454 556888888999995 6776666665566678888877776 4557889
Q ss_pred CcEEEEEcCC
Q 001178 939 AQLIFWNTDT 948 (1131)
Q Consensus 939 g~v~lwd~~~ 948 (1131)
|.+++...+.
T Consensus 315 G~~~~~~~~~ 324 (330)
T 3hxj_A 315 GKFYALFNLE 324 (330)
T ss_dssp SCEEEEEC--
T ss_pred CeEEEEeccc
Confidence 9998887655
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=0.0002 Score=84.96 Aligned_cols=486 Identities=8% Similarity=-0.030 Sum_probs=245.0
Q ss_pred CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEecCCCccce
Q 001178 368 GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQGSNDLCQ 446 (1131)
Q Consensus 368 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~ 446 (1131)
....|+..|+........ .....-..+..++|++.+..|..+. ..+.|..+++.+.....
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~- 76 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ- 76 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE-
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE-
Confidence 456888888876431110 1122344578999999777666554 46789999987653211
Q ss_pred eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeecccCCccEEEEE-ecCCeEE
Q 001178 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFST-AVDGKIK 524 (1131)
Q Consensus 447 ~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~ 524 (1131)
..+..-......+++.+.+.. ++++-...+.|.+.+.+|+....+. ..-.....+++.+.. +.++++- +..+.|.
T Consensus 77 -~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 77 -NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIE 153 (619)
T ss_dssp -EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEE
T ss_pred -EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEE
Confidence 122222356889999997664 5666677889999997777655543 344456778886543 3333443 2245677
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
..+++.................+++++++..|+.+-. ....|...|...........+... ....+++..+ .++
T Consensus 154 r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~~~~~~~~~~~~-~P~gi~~~~~--~ly 227 (619)
T 3s94_A 154 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTLFED--ILY 227 (619)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCCEEC----------CCCEEESSS--EEE
T ss_pred EEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCCccEEEEeCCCC-CceEEEEeCC--EEE
Confidence 6777654444444344456899999998888887743 367899999865433322221111 2234556443 444
Q ss_pred EE-EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEE-cCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccc
Q 001178 605 AA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRF-NKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682 (1131)
Q Consensus 605 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~-sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 682 (1131)
.+ ...+.|...|..+++....+..... ....+.+ +|..+-. + .. .+... .+.-..
T Consensus 228 ~td~~~~~V~~~d~~tg~~~~~i~~~~~--~p~~i~v~~~~~qp~--~------------~n-~C~~~-ng~Cs~----- 284 (619)
T 3s94_A 228 WTDWSTHSILACNKYTGEGLREIHSDIF--SPMDIHAFSQQRQPN--A------------TN-PCGID-NGGCSH----- 284 (619)
T ss_dssp EECTTTCSEEEEESSSCCCCEECCSCCC--CCSEEEECCGGGSCC--C------------CC-TTTTT-GGGCSS-----
T ss_pred EecCCCCEEEEEECCCCcccEEEecCCC--CCcEEEEEccccCCC--c------------cc-cccCC-CCcccc-----
Confidence 44 3567788888877765554432211 1222222 1210000 0 00 00000 000000
Q ss_pred ccccccCccceecccccccccccccCCCCCCccccccCCCccccC-CCCceeccccCCCCcceeeecccCCceeEEEEcC
Q 001178 683 TEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG-IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMP 761 (1131)
Q Consensus 683 ~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~ 761 (1131)
.++.........+.+|. +-.+. .+...+. ....++.-+..+.++..++...... .+.++
T Consensus 285 lCl~~~~~~~~~C~C~~---------------g~~l~-~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~----~~~~~ 344 (619)
T 3s94_A 285 LCLMSPVKPFYQCACPT---------------GVKLL-ENGKTCKDGATELLLLARRTDLRRISLDTPDFT----DIVLQ 344 (619)
T ss_dssp EEEECSSTTSEEEECCT---------------TCCBC-TTSSCBCSSCSEEEEEEESSCEEEEESSSTTCC----CEECC
T ss_pred eEECCCCCCCceEeCCc---------------hheec-ccCcccCCCCceEEEEEcccceEEEecCCCccc----eeEEe
Confidence 00000000000112222 00000 0000000 0111222222344544444332111 11111
Q ss_pred CCCCCccceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEE
Q 001178 762 ESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVA 840 (1131)
Q Consensus 762 ~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~ 840 (1131)
. .....+..++|.+.+..|+.+.. .+.|..++++.... . .+.. ..-.....++
T Consensus 345 ~--~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-------~------------~v~~-----~~~~~p~GlA 398 (619)
T 3s94_A 345 L--EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-------Q------------FVVT-----AQIAHPDGIA 398 (619)
T ss_dssp C--SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E------------EEEC-----SSCSCCCEEE
T ss_pred c--cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-------E------------EEEE-----CCCCCcCceE
Confidence 1 12345678999986666665543 56665555432100 0 0000 1224556899
Q ss_pred ecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC-CCcEEEEEeecceeEEeecccc
Q 001178 841 LSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKTKLKGHQ 917 (1131)
Q Consensus 841 ~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~~~~~h~ 917 (1131)
+...+..|..+. .+.|.+.++.+......+...-.....+++.|..|.+..+-.. .+.|...+++...........-
T Consensus 399 vD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l 478 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSL 478 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCC
Confidence 988667666665 5789999987654333333344678999999944555444322 3566666654322222223334
Q ss_pred cCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCc
Q 001178 918 KHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWE 950 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~ 950 (1131)
...+.|++++++..|..+. ..+.|...+++...
T Consensus 479 ~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 479 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred CCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 5678999998766666554 45678888887644
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-08 Score=109.63 Aligned_cols=217 Identities=13% Similarity=0.106 Sum_probs=139.3
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 415 VAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 415 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
..+..+|. |..++.++.|..|| .+++.+. ....+...+.++...+++. +..++.+ +..+|.+|+.+..+.
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~~ 94 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRFD 94 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGSC
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEEE
Confidence 44445554 45566788899999 7776433 2222344467777777775 5555555 888887776665554
Q ss_pred CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..........+. +..++.++.++.|..+|.+ +............+.++...+++..++ ++. ++.|..+|.
T Consensus 95 ~~~~~~~~~~~~----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~----~~~l~~~d~ 164 (330)
T 3hxj_A 95 TKKAIVSDFTIF----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSN----DNYLYAINP 164 (330)
T ss_dssp C-----CCEEEE----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECT----TSEEEEECT
T ss_pred CCCCcccCceEE----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcC----CCEEEEECC
Confidence 333333333332 2467888889999999988 666666555555566677777887554 432 688999998
Q ss_pred CCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
. ++.+..+.... ..+.++.+.+++. ++.++ +.|..+| .+++......... ..+.++...++|. +.+++.++
T Consensus 165 ~-g~~~~~~~~~~-~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~ 235 (330)
T 3hxj_A 165 D-GTEKWRFKTND-AITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLDG 235 (330)
T ss_dssp T-SCEEEEEECSS-CCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETTT
T ss_pred C-CCEeEEEecCC-CceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCCC
Confidence 8 87776666433 3566677767766 44444 7899999 6777666655433 2578888888775 45566667
Q ss_pred cEEEEe
Q 001178 655 GIKILA 660 (1131)
Q Consensus 655 ~i~iw~ 660 (1131)
.+..++
T Consensus 236 gl~~~~ 241 (330)
T 3hxj_A 236 HLYAIN 241 (330)
T ss_dssp EEEEEC
T ss_pred eEEEEC
Confidence 776665
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=9.7e-08 Score=108.53 Aligned_cols=273 Identities=16% Similarity=0.114 Sum_probs=172.0
Q ss_pred cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEE-e-CCCCEEEEEE------------------cCC
Q 001178 551 ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQF-D-TTRNRILAAG------------------EDN 610 (1131)
Q Consensus 551 ~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~dg 610 (1131)
+||++++.+.. .+.+|.+.|+.+.+..+.+.-........+++ + |+++++++++ .++
T Consensus 99 ~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 99 YDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred cCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 48999988753 36789999999999888665433345777887 5 8999999985 246
Q ss_pred cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCc
Q 001178 611 QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGS 690 (1131)
Q Consensus 611 ~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1131)
.+.+.|..+.+....+...+. ...++++|+|+++++.+.+..- + ..+........
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~-~~i~~~~~~~~-------------- 230 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------G-MTLPEMTAAEM-------------- 230 (595)
T ss_dssp EEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------C-SSHHHHTCCSE--------------
T ss_pred eEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------C-cchhhcccccc--------------
Confidence 799999999999998886552 4678899999999999876321 0 00000000000
Q ss_pred cceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccce
Q 001178 691 AVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKV 770 (1131)
Q Consensus 691 ~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i 770 (1131)
..+.+.+....
T Consensus 231 ------------------------------------------------d~v~V~~~~~~--------------------- 241 (595)
T 1fwx_A 231 ------------------------------------------------DHIVVFNIAEI--------------------- 241 (595)
T ss_dssp ------------------------------------------------EEEEEEEHHHH---------------------
T ss_pred ------------------------------------------------ceEEEeeccce---------------------
Confidence 00001110000
Q ss_pred EEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEE
Q 001178 771 ARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMS 850 (1131)
Q Consensus 771 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~ 850 (1131)
..+.++|+.... +.+.+.|..... +......+ .-.....++.++|||+++++
T Consensus 242 --~~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~I--pvg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 242 --EKAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYI--PIANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp --HHHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEE--EEESSCCCEEECTTSSEEEE
T ss_pred --eEeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEE--ecCCCceEEEEcCCCCEEEE
Confidence 001222332221 224444432210 11100001 01335568999999999999
Q ss_pred Ee--CCeEEEEECCCce------------eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----------
Q 001178 851 AG--GGKVSLFNMMNFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV---------- 906 (1131)
Q Consensus 851 ~~--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~---------- 906 (1131)
++ +++|.++|+.+.+ ...+.. -......++|+| +|...++...|+.|.+||+++
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 88 6889999999763 233333 345689999999 676667778899999999987
Q ss_pred ceeEEeecccccCe-----eEEEEccCCCEEEEEeC---CCc----------EEEEEcCCCc
Q 001178 907 DEVKTKLKGHQKHI-----TGLAFSTNLNILVSSGS---DAQ----------LIFWNTDTWE 950 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V-----~~l~~s~dg~~l~s~~~---Dg~----------v~lwd~~~~~ 950 (1131)
.+.+..+..|-.+- .++.++|||++|+++.. |+. -.++|+.+++
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 55667766554332 23466899999998754 543 2789996544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-07 Score=105.36 Aligned_cols=283 Identities=12% Similarity=0.020 Sum_probs=169.9
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEE
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVS 857 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~ 857 (1131)
+..+++++.++.+..+|..+++ .+|....+.... ........+.+.....++ .+.+++ ++.|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~-------------~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~v~v~~~~g~l~ 116 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGK-------------EIWSVSLAEKDG--WFSKEPALLSGGVTVSGG-HVYIGSEKAQVY 116 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCC-------------EEEEEECCC-----CCSCCCCCEEEEEEEETT-EEEEEETTSEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCc-------------eeeeecCccccc--cccccCcccccCceEeCC-EEEEEcCCCEEE
Confidence 5667777777888777754422 233322111000 000002223222222344 455555 89999
Q ss_pred EEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCe-----eEEEEccCCCEE
Q 001178 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI-----TGLAFSTNLNIL 932 (1131)
Q Consensus 858 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V-----~~l~~s~dg~~l 932 (1131)
.+|..+++.+................ ++ .+++++.++.|..+|..+++.+-......... ...... +..+
T Consensus 117 a~d~~tG~~~W~~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v 191 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAA 191 (376)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEE
T ss_pred EEECCCCCEEEEEeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEE
Confidence 99999999987776543332333333 33 66778899999999999998876655432211 222222 4567
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC-CC---c-eEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCC
Q 001178 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP-VG---E-TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV 1007 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~---v-~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~ 1007 (1131)
+.++.++.|..+|..+++.........+.+... .. + ..... .++..++.+.++.+..+|..+++.+.....
T Consensus 192 ~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--- 267 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKREL--- 267 (376)
T ss_dssp EECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEECC---
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeeccC---
Confidence 788889999999999988655543322111000 00 0 11111 234444445689999999999987755432
Q ss_pred CCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCc
Q 001178 1008 LSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGS 1087 (1131)
Q Consensus 1008 ~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~ 1087 (1131)
.....+.. ++..|++++.++.|..+|..+|+.+......... ......+ .+..|+.++.+|.
T Consensus 268 --~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~---------~~~~~~~-----~~~~l~v~~~~g~ 329 (376)
T 3q7m_A 268 --GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR---------LLTSPVL-----YNGNLVVGDSEGY 329 (376)
T ss_dssp --CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS---------CCCCCEE-----ETTEEEEECTTSE
T ss_pred --CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC---------cccCCEE-----ECCEEEEEeCCCe
Confidence 23444443 4667888888999999999999987766522110 0111112 2358889999999
Q ss_pred EEEEecCCCcccccccc
Q 001178 1088 VKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1088 v~iW~~~~~~~~w~~~~ 1104 (1131)
|..+|..+++..|....
T Consensus 330 l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 330 LHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCcEEEEEec
Confidence 99999999999998765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.96 E-value=0.0005 Score=87.12 Aligned_cols=571 Identities=9% Similarity=0.043 Sum_probs=282.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEecCCCc-----cceeeeeecCcCCeeEEEEecCC---CceEEEEE-c--CCCcEE
Q 001178 413 SRVAWSPDGNFIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDLAFSYPN---KQLCIVTC-G--DDKLIR 481 (1131)
Q Consensus 413 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~~V~~l~~s~d~---~~~~l~s~-s--~d~~i~ 481 (1131)
+|+++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++..... .. .++++ | .+|.++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeEE
Confidence 567777666 778888888777777764321 1222222 345789998886432 22 24433 2 578899
Q ss_pred EEe--CCCceeEEec-CCccCeEEEeecc-cCCccEEEEEecCCeEEEEeCCCCceeEEecCC-----CceEEEEEEccC
Q 001178 482 VWD--LSGRKLFQFE-GHEAPVYSVCPHQ-KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP-----GLWCTTMLYSAD 552 (1131)
Q Consensus 482 iwd--~~~~~~~~~~-~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~~ 552 (1131)
+.. ..-+.+..+. ..-..++.+.... +....+|+.+..+.+ +++.+... ........ ...+.+-.+ .+
T Consensus 407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence 887 4444333332 1224556654321 123357776666665 45544221 22222111 111211111 22
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
+ .++=.. ...|++.+...+..+..+....+..|...+.+ +..++.++ ++.+.++.+..++........ -.
T Consensus 484 ~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~ 553 (1158)
T 3ei3_A 484 Q-QLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTE-ME 553 (1158)
T ss_dssp T-EEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEE-CS
T ss_pred C-eEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccC-CC
Confidence 2 333332 44577777665556666654444456655554 34666665 678888888766433222211 12
Q ss_pred CCcceEEEcCC------CCEEEEEEC-CCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccccc
Q 001178 633 PSLPRLRFNKE------GNLLVVTTA-DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAER 705 (1131)
Q Consensus 633 ~~i~~v~~sp~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~ 705 (1131)
..|.|+++.|. +.++++|.. |++++|+++.+. +.+.... +.. ...|.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~------------L~~-------~~~p~------ 607 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEM------------LGG-------EIIPR------ 607 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEE------------CCS-------SCCEE------
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEE------------CCC-------CCCCc------
Confidence 36899998763 479999997 999999998643 1111000 000 00011
Q ss_pred ccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeeccc-CCceeEEEEcCCCCCCccceEEEEeecCCceEEE
Q 001178 706 VDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIV-DPLQCRVVAMPESTDSASKVARLLYTNSGIGILA 784 (1131)
Q Consensus 706 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 784 (1131)
.-.+..- ....+++.+-.||.+..+.++... .....+...+. ..++.=..+...|..-+.
T Consensus 608 ---------si~l~~~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-----~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 608 ---------SILMTTF-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-----TQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp ---------EEEEEEE-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-----SSCCEEEEEESSSCEEEE
T ss_pred ---------EEEEEEe-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-----CCceEEEEEeeCCceeEE
Confidence 0000000 012345556666666555543211 11111111111 112222222222222222
Q ss_pred eeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCee-EEEecCC--CCEEEEEeCCeEEEEEC
Q 001178 785 LWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVP-CVALSKN--DSYVMSAGGGKVSLFNM 861 (1131)
Q Consensus 785 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~-~l~~s~d--g~~la~~~dg~i~vwd~ 861 (1131)
+.++.-..+|.- .+++....+ ....+. ...|+.. ..-++..+++.++|..+
T Consensus 669 a~s~rp~liy~~-----------------------~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i 722 (1158)
T 3ei3_A 669 ACSDRPTVIYSS-----------------------NHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTI 722 (1158)
T ss_dssp EESSSCEEEEES-----------------------SSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEE
T ss_pred EECCCCEEEEEc-----------------------CCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEEe
Confidence 222222222210 111111111 111222 2234322 23455555666888876
Q ss_pred CCce--eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-------------------------------------------
Q 001178 862 MNFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGMED------------------------------------------- 896 (1131)
Q Consensus 862 ~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------------------------------------------- 896 (1131)
.+.. .++++.- ...+..++++| ..+.++++..+
T Consensus 723 ~~~~~~~~~~ipL-~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 723 DEIQKLHIRTVPL-YESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp CCSSSEEEEEEEC-SSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred cccCCeeEEEEeC-CCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 5432 2333332 35678888888 55544443311
Q ss_pred ------CcEEEEEeecceeEEeecc-cccCeeEEE---EccC-CCEEEEEe----------CCCcEEEEEcCCCceeeee
Q 001178 897 ------STIQIYNVRVDEVKTKLKG-HQKHITGLA---FSTN-LNILVSSG----------SDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 897 ------g~I~iwd~~~~~~~~~~~~-h~~~V~~l~---~s~d-g~~l~s~~----------~Dg~v~lwd~~~~~~~~~~ 955 (1131)
+.|++.|..+.+.+..+.- ....+.+++ |..+ ..+|+.|. ..|.|+++++..++. ...
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv 879 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTV 879 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEE
Confidence 2355666555555544321 122344443 4433 46788775 247899999974322 111
Q ss_pred eeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEE
Q 001178 956 AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGV 1035 (1131)
Q Consensus 956 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~v 1035 (1131)
.... ..+++++++-- +.+|+++-...+++|++...+.++ ..... -..|..+.....|.++++|+.-..|.+
T Consensus 880 ~~~~----v~g~v~al~~~--~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 880 AEKE----VKGAVYSMVEF--NGKLLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp EEEE----ESSCEEEEEEE--TTEEEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred EEEE----cCCcCEEEeee--CCEEEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEhhheEEE
Confidence 1111 11456665533 337888888999999998655433 11110 112333333345789999997777777
Q ss_pred EEC--CCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1036 FDA--DSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1036 wd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
+.+ ..+++...-. ...+....++.|... ..++.+..+|+|.+.+...
T Consensus 951 ~~y~~~~~~L~~~a~-----------D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 951 LAYKPMEGNFEEIAR-----------DFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEETTTTEEEEEEE-----------CCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred EEEEcCCCeEEEEEe-----------ecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence 554 3333322221 122344556666543 4788899999999998765
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=121.97 Aligned_cols=189 Identities=7% Similarity=-0.024 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
++..+++++.|+.|..||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 577899999999999999999986653 333 4565666667777 678888999999999 68888776654422
Q ss_pred CeEEEeecccC-CccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 499 PVYSVCPHQKE-NIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 499 ~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
.... ..|.- .+..+++++.|+.|+.||.++++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~~--~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQ--ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHHT--TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred cccc--cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 1110 01111 23578888999999999999988877665543 2345678888888876 889999999999
Q ss_pred eeeEEEecccCCceEEEEEeCCC---CEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
+.+..+.... .....+..+. ..+++++.||.|+.||..+++.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654321 1223333332 5678889999999999999998877664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=0.00062 Score=86.28 Aligned_cols=175 Identities=11% Similarity=0.083 Sum_probs=106.8
Q ss_pred CeEEEEECCCceeEEEEeCC-CCCeeEEEE---eCCCCcEEEEEe----------CCCcEEEEEeecceeEEee-ccccc
Q 001178 854 GKVSLFNMMNFKVMTTFMSP-PPASTFLAF---HPQDNNIIAIGM----------EDSTIQIYNVRVDEVKTKL-KGHQK 918 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~---s~~~~~~la~g~----------~dg~I~iwd~~~~~~~~~~-~~h~~ 918 (1131)
..|++.|..+++.+..+.-. ...+.+++. ..+...++++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 45888998888887776533 334555553 332357898887 3578999999865433222 23467
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEE--EeCCC
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAI--YDGSK 995 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~v--wd~~~ 995 (1131)
+|++++-- +|++|+.. ...|++|++...+...... .. . ..+..+.....+.++++|+ -..+.+ |+...
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~----~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~ 957 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NH----Y-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPME 957 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EE----C-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTT
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ec----c-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC
Confidence 89998754 35444444 3689999998654322111 10 1 1233334444577888876 334444 55444
Q ss_pred cccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 996 ~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
++....- .+.....++++.|-.++ .++.++.+|.+.+.....
T Consensus 958 ~~L~~~a--~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 958 GNFEEIA--RDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TEEEEEE--ECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CeEEEEE--eecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 4333322 22336789999998665 667788999999997764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-08 Score=105.67 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=150.9
Q ss_pred EEe--cCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccC-CCCCEEEEEEcCCCCEEEEEeCC
Q 001178 354 DFH--PFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD-SSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 354 ~fs--pdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d 430 (1131)
+++ ++++++++.|..++.|.|+|+.+..... ...+..+ ...+... -...-..+..+||| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 447 8999988899999999999997542110 0011110 0001101 11234567888999 66666555
Q ss_pred ------CeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEc-------------------CCCcEEEEe
Q 001178 431 ------HLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCG-------------------DDKLIRVWD 484 (1131)
Q Consensus 431 ------~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s-------------------~d~~i~iwd 484 (1131)
+.|.+.|.++.+.+.... ..... .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 789999999987654321 12222 2234688999999 677764 478999999
Q ss_pred -CCCceeEEecCC--ccCeEEEeecccCCccEEEEEe------cCCeEEEEeCCCCceeE--E--ecCC-----------
Q 001178 485 -LSGRKLFQFEGH--EAPVYSVCPHQKENIHFIFSTA------VDGKIKAWLYDNVGSRV--D--YDAP----------- 540 (1131)
Q Consensus 485 -~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s------~dg~i~~wd~~~~~~~~--~--~~~~----------- 540 (1131)
.+++.+.++..- ......+.|..++++++++.++ .+++|.+|..+.+.-.. . +...
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 667667766542 2344566665567778877776 46688877665422111 1 1110
Q ss_pred -----CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC---CeeeEEEecccC---------C----ceEEEEEeCC
Q 001178 541 -----GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE---GALKRTYIGFRK---------K----SAGVVQFDTT 599 (1131)
Q Consensus 541 -----~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~v~~~~~s~~ 599 (1131)
......+.+++||++|.++.. +.+.|.++|+.. .+++..+...-. . .-..+.++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 234678999999999998875 467999999853 345555443200 0 2466899999
Q ss_pred CCEEEEEE
Q 001178 600 RNRILAAG 607 (1131)
Q Consensus 600 ~~~l~~~~ 607 (1131)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-10 Score=123.41 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCC
Q 001178 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLP 965 (1131)
Q Consensus 886 ~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 965 (1131)
++..+++++.||.|+.||..+|+.+-.+.. +.+.+..+..++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456788899999999999999999888776 56666667778888888899999999999887754332211100000
Q ss_pred CCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceee
Q 001178 966 VGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRC 1045 (1131)
Q Consensus 966 ~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1045 (1131)
....+..++..++.+.++.++.||..+|+.+..+..+ . ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 85 ---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ---TCSCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCC---C----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 0111123444444456899999999999988776544 1 23567788999999999999999999999877
Q ss_pred EecCCccccCCCCCCCCccccEEEEEcCC--CCCeEEEEecCCcEEEEecCCCccccccc
Q 001178 1046 RIAPSAYMSQASPNSSQTVFPLVVTSHPQ--EPNQLAVGLTDGSVKVIEPSETERKWGVA 1103 (1131)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~v~~~~v~~~p~--~~~~l~s~~~Dg~v~iW~~~~~~~~w~~~ 1103 (1131)
.+...... . ..+.+. ....+++++.||.|+.||..+++..|...
T Consensus 155 ~~~~~~~~--------~------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYA--------A------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEEC--------C------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEeccccc--------C------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 66532110 0 011110 11467788999999999999999999865
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=0.00042 Score=82.22 Aligned_cols=209 Identities=9% Similarity=-0.047 Sum_probs=130.4
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
.-..+..++|++.+..++.+-..++.|..+++....... +..........+|+.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 345789999999877777777778999999987643221 1112224567899998766554
Q ss_pred EE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 426 VA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
.+ ...+.|.+.++++... .. -+...-.....|++.|.... ++++- +..+.|...+..|.....+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence 44 5567899999876432 11 12233445789999986654 34443 33567777777777665554445567888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.+.. +.+.++-...+.|...+++...... +.........+++.. ..++.+.. ..+.|...|..+|+....+
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~--~~ly~tD~---~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ--DYIYWTDW---SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET--TEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC--CEEEEecC---CCCEEEEEECCCCCceEEE
Confidence 886533 2444455667889999987654432 222233445677654 34444432 2667888887777655555
Q ss_pred e
Q 001178 584 I 584 (1131)
Q Consensus 584 ~ 584 (1131)
.
T Consensus 245 ~ 245 (628)
T 4a0p_A 245 Q 245 (628)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=107.81 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=165.1
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCCC-CCeeEEEE-e-CCCCcEEEEEe------------------CCCcE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPP-PASTFLAF-H-PQDNNIIAIGM------------------EDSTI 899 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~-s-~~~~~~la~g~------------------~dg~I 899 (1131)
+||+++.+.. ++.|.+.|+.+.++...+..+. ..+..+++ + | ++.++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3999999887 4779999999999988665433 45888898 5 8 777777774 34579
Q ss_pred EEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC--------------------------------------cE
Q 001178 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA--------------------------------------QL 941 (1131)
Q Consensus 900 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--------------------------------------~v 941 (1131)
.++|.++.+...++.--. .-..++++|||+++++.+.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988887776322 456788999999998887543 35
Q ss_pred EEEEcCC--Cce-eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcc------------cceeeec
Q 001178 942 IFWNTDT--WEK-RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKME------------CIRQWVP 1004 (1131)
Q Consensus 942 ~lwd~~~--~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~------------~~~~~~~ 1004 (1131)
.+.|..+ ++. ...... . .....+.++|||++++++. +..+.++|+.+.+ .+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 6666665 221 111111 1 3456799999999999875 7889999999763 2222222
Q ss_pred CCCCCCCeEEEEEccCCCEEEE-EecCCcEEEEECCC----------CceeeEecCCccccCCCCCCCCccccEEEEEcC
Q 001178 1005 QDVLSSPISSAAYSCNSQLIYA-TFTDGSIGVFDADS----------LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHP 1073 (1131)
Q Consensus 1005 ~~~~~~~v~~i~~s~dg~~l~s-~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p 1073 (1131)
......++|++|| ++.+ ...|+.|.+||+++ ...+.++..+- .+.| ...+..+..+|
T Consensus 330 ----G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh------~~~~~g~t~~~ 397 (595)
T 1fwx_A 330 ----GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGH------LKTVMGETLDA 397 (595)
T ss_dssp ----CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEE------EEETTTTSTTC
T ss_pred ----CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-cccc------ceeccceEeCC
Confidence 4578899999999 5554 44899999999987 55666665432 1111 00011123355
Q ss_pred CCCCeEEEEecC--CcE-----------EEEecCCCccccccccCC
Q 001178 1074 QEPNQLAVGLTD--GSV-----------KVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1074 ~~~~~l~s~~~D--g~v-----------~iW~~~~~~~~w~~~~p~ 1106 (1131)
|+++|+++..= .++ .++|++.++++-..-.|.
T Consensus 398 -DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 398 -TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp -CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred -CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 67788777651 234 889998888875555554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-05 Score=85.31 Aligned_cols=222 Identities=11% Similarity=0.053 Sum_probs=143.1
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc
Q 001178 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR 488 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~ 488 (1131)
..+..++|++++..|..+ ..++.|.+++..++.. .. .+.........+++.+++.. ++++....+.|.+++..+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 357899999976655554 4568999999976542 11 12222346789999998664 5566667789999996665
Q ss_pred eeEEecC-CccCeEEEeecccCCccEEEEEec---CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 489 KLFQFEG-HEAPVYSVCPHQKENIHFIFSTAV---DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 489 ~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
....+.. .......+++++.. ..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4433322 22456788886532 34444433 468888888654333222233346789999999888877753
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
..+.|.++|.........+... . ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~-~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGL-Q-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECC-C-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCC-C-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 3678999998755443333321 2 33455554 45566555 56899999999999888876432 123577888887
Q ss_pred CC
Q 001178 644 GN 645 (1131)
Q Consensus 644 ~~ 645 (1131)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-06 Score=102.94 Aligned_cols=193 Identities=12% Similarity=0.156 Sum_probs=131.1
Q ss_pred CCeEEEEECCCceeEEEEeCCC-------------------------------CCeeEEEEeCCCCcEEEEEeCCCc---
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGMEDST--- 898 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 898 (1131)
+|.|..+|..+++.+-++.... .....+++.| ...+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888887765311 0112468888 6677888877763
Q ss_pred ----------------EEEEEeecceeEEeecc--cc-------cCeeEEEEccCCC---EEEEEeCCCcEEEEEcCCCc
Q 001178 899 ----------------IQIYNVRVDEVKTKLKG--HQ-------KHITGLAFSTNLN---ILVSSGSDAQLIFWNTDTWE 950 (1131)
Q Consensus 899 ----------------I~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd~~~~~ 950 (1131)
|..+|..+|+.+-.++. |. .+.....+..+|+ .++.++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999998876653 32 2333333444675 68899999999999999988
Q ss_pred eeeeeeeec---------CCC--------C-------------CCCCceEEEEcCCCcEEEEE-----------------
Q 001178 951 KRKSIAIQL---------PAG--------K-------------LPVGETRVQFHSDQVRLLVN----------------- 983 (1131)
Q Consensus 951 ~~~~~~~~~---------~~~--------~-------------~~~~v~~v~~s~d~~~l~~~----------------- 983 (1131)
.+....... ..+ . -...-..++++|+...+++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 763221110 000 0 00011236788887776642
Q ss_pred --------------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCce
Q 001178 984 --------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRL 1043 (1131)
Q Consensus 984 --------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1043 (1131)
.++.|+.||+.+++.+-..... .+.....+...+.++++++.|+.++.||..+|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1277999999999988776543 2334445556788999999999999999999999
Q ss_pred eeEecCC
Q 001178 1044 RCRIAPS 1050 (1131)
Q Consensus 1044 ~~~~~~~ 1050 (1131)
+.++...
T Consensus 492 l~~~~~~ 498 (668)
T 1kv9_A 492 LWQFEAQ 498 (668)
T ss_dssp EEEEECS
T ss_pred heEecCC
Confidence 9888753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-06 Score=89.26 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=140.5
Q ss_pred CCeeEEEecCCCCEEEEEe---CCeEEEEECCCceeEEEEeCCCC-CeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 834 DVVPCVALSKNDSYVMSAG---GGKVSLFNMMNFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
.....++|++|+.+.++.+ ++.|.++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 3467899999875555543 47899999999999998764322 23355555 456666666789999999999999
Q ss_pred EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeE
Q 001178 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1131)
Q Consensus 910 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i 988 (1131)
+..+...... ...+++||+.|+++..++.|.++|..+.+.......... +..-.....+.|. +|...+.. .++.|
T Consensus 99 ~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887533121 244666888777777788999999999776655544321 1111234567777 66544443 37899
Q ss_pred EEEeCCCcccceeeecCC----------CCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCC
Q 001178 989 AIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSL 1041 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~ 1041 (1131)
.+.|..+++.+..+.... ....-.+.|+|+|+++.|++++ ..+.+++.++...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999888875420 0123568999999998666665 6788998887654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-06 Score=100.08 Aligned_cols=109 Identities=10% Similarity=0.064 Sum_probs=72.2
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCce----------E-EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLW----------C-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~----------v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
..++.++.++.|..+|..+++.+..+...... + ..+++ .+..+++++. ++.|+.+|..+|+.+
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI 140 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence 46777888899999999998888876543211 0 11222 3456666654 889999999999998
Q ss_pred EEEecccC---CceEE-EEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEec
Q 001178 581 RTYIGFRK---KSAGV-VQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 581 ~~~~~~~~---~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 628 (1131)
..+..... ..+.+ ..+ .+..++++.. +|.|+.+|..+|+.+.....
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 88765321 01111 111 1345666543 58999999999999887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.5e-06 Score=85.87 Aligned_cols=204 Identities=9% Similarity=-0.025 Sum_probs=135.0
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+..+++++++..|..+. .+.|..++..+......+.........++++++++.++++-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3467899999887777776 58899999987655444433335789999999445566666667889999986433222
Q ss_pred eecccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CC
Q 001178 912 KLKGHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ET 986 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~ 986 (1131)
...........++++|++..|..+.. .+.|..++++..... . +... .......+++++++..|.++. .+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~--~~~~---~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-I--LAQD---NLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-E--EECT---TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-E--EEEC---CCCCCcEEEEcCCCCEEEEEECCCC
Confidence 22222245689999997666554443 367888888753221 1 1111 114567899999988777654 57
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 1049 (1131)
.|.+++.........+.. ......+++. +..|+.+. ..+.|.++|..+++.+..+..
T Consensus 190 ~I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EEEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 899999986543333222 2344667654 55566555 568999999999998888753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-06 Score=88.55 Aligned_cols=223 Identities=12% Similarity=0.056 Sum_probs=147.9
Q ss_pred ceeEEEEeCCC-CCeeEEEEeCCCCcEEEEEeC--CCcEEEEEeecceeEEeeccccc-CeeEEEEccCCCEEEEEeCCC
Q 001178 864 FKVMTTFMSPP-PASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKTKLKGHQK-HITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 864 ~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~--dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
.+.+.++.... .....++|++ ++.++++.+. ++.|.++|+.+++.+..+.-... ....+++.. ++..++.-.++
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence 35566665322 2468999999 6766665543 57999999999998887652221 223455542 24445555688
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.++|..+.+........ . . ....+++||+.|+++. ++.+.++|..+.+.+..+..... .-..++.+.
T Consensus 87 ~v~viD~~t~~v~~~i~~g--~-~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ--M-K-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEEETTTTEEEEEEECC--S-S-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCCCcEEEEEECC--C-C-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 9999999998765544322 0 1 1234667888777754 67899999999888887764311 012467888
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCC-CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA-SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
|. +|+..+....++.|.+.|..+++.+..+......+.. .........+..|+|+|....+++++...++|.+-++..
T Consensus 159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 88 7755554446789999999999999999753211000 000111234457999997777888888999999999876
Q ss_pred Cc
Q 001178 1096 TE 1097 (1131)
Q Consensus 1096 ~~ 1097 (1131)
.+
T Consensus 238 ~~ 239 (266)
T 2iwa_A 238 VR 239 (266)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.69 E-value=0.0026 Score=78.42 Aligned_cols=529 Identities=11% Similarity=0.044 Sum_probs=270.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|.++....+|. |-.|+.+| +..||..+.+.... .......|.++.. .+|. |-.
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g~-lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGDT-LWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETTE-EEE
T ss_pred CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCCc-EEE
Confidence 34689988888885 55566554 78999876543210 0011235777754 3554 445
Q ss_pred EeCCCeEEEEEecCCCccceeeee-e-cCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC------cc
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEI-D-AHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH------EA 498 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~-~-~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h------~~ 498 (1131)
++.+ -+..||..+++. ...... . -....|.++....+|. +.+ |+.+ -+..+|........+... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 5555 578888776542 111000 0 1134688888887887 333 3333 577788433333322211 12
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
.|.++.. +.++..|..|+. +-+..++..+.............|.++....+|...+.. ++-+.+++..+++
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT------~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT------DNGLYVYHNDTTP 262 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE------TTEEEEECCTTSC
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe------CCceeEEecCCCc
Confidence 3777765 333445555654 457778876654322111223458888888888776654 2348888877665
Q ss_pred eeEEEec------ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec-----cCCCCCcceEEEcCCCCEE
Q 001178 579 LKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA-----EGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 579 ~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~i~~v~~sp~~~~l 647 (1131)
....... .....|.++....++. |..|+..| +.++.... ....... ......|.++....+|.+.
T Consensus 263 ~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW 338 (758)
T 3ott_A 263 LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW 338 (758)
T ss_dssp CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE
T ss_pred EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE
Confidence 4322111 1223577887777665 55565666 55543322 1111111 0111246777777777655
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
+ |+.+| +..++..++... .+. .+.+.
T Consensus 339 i-Gt~~G-l~~~~~~~~~~~--~~~----------------------~~~~~---------------------------- 364 (758)
T 3ott_A 339 F-GGANG-LIRFTDPAGERH--DAI----------------------WYRMG---------------------------- 364 (758)
T ss_dssp E-EETTE-EEEESCTTSSCC--CCE----------------------EECTT----------------------------
T ss_pred E-eeCCc-ceeecccccccc--eeE----------------------EeccC----------------------------
Confidence 4 45554 445543322000 000 00000
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
. . ...-....|.++....+|...+ ++ ++-+..|+.......
T Consensus 365 --------~--~----------------------~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~----- 405 (758)
T 3ott_A 365 --------D--K----------------------TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFI----- 405 (758)
T ss_dssp --------C--S----------------------SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEE-----
T ss_pred --------C--c----------------------CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEE-----
Confidence 0 0 0000224566777667776444 33 345666654332110
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCc-----eeE---EEEe----CCCC
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-----KVM---TTFM----SPPP 875 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-----~~~---~~~~----~~~~ 875 (1131)
.+..... ........|.++...++|++.+....+.|.++|..+. ... ..+. ....
T Consensus 406 -------~~~~~~~------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 472 (758)
T 3ott_A 406 -------HYNIVDN------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM 472 (758)
T ss_dssp -------EEEEECC------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred -------EeecCCC------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence 0000000 0000235678888888887665444667888886531 111 1221 1223
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecc---cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKG---HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~ 952 (1131)
.|.++...+ ++.+.+.++..+-|..+|..+++....... ....+.++....+|.+.+.. ..| +..++..+.+..
T Consensus 473 ~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~ 549 (758)
T 3ott_A 473 FINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQ 549 (758)
T ss_dssp CEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCC
T ss_pred eeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceE
Confidence 588898888 677665334445588889877765432211 13467888888888776643 444 888887664422
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc-cCCCEEEEEecCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS-CNSQLIYATFTDG 1031 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~~dg 1031 (1131)
.. . ..+-....+.++... +|.+. .+++..+..++..+.+... +... ...+....+. ++|. |..|+.+|
T Consensus 550 ~~---~-~~gl~~~~i~~i~~~-~g~lW-i~t~~Gl~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~G~-l~fG~~~G 618 (758)
T 3ott_A 550 SI---S-FGSFSNNEILSMTCV-KNSIW-VSTTNGLWIIDRKTMDARQ-QNMT---NKRFTSLLFDPKEDC-VYLGGADG 618 (758)
T ss_dssp BC---C-CCC---CCEEEEEEE-TTEEE-EEESSCEEEEETTTCCEEE-C--C---CCCCSEEEEETTTTE-EEEECBSE
T ss_pred Ee---c-ccCCCccceEEEEEC-CCCEE-EECCCCeEEEcCCCceeEE-ecCC---CCceeeeEEECCCCc-EEEecCCc
Confidence 11 1 111112457777664 56544 4446678889988765432 2111 2233344444 4565 55566666
Q ss_pred cEEEEECC
Q 001178 1032 SIGVFDAD 1039 (1131)
Q Consensus 1032 ~i~vwd~~ 1039 (1131)
- ..++.+
T Consensus 619 l-~~f~p~ 625 (758)
T 3ott_A 619 F-GISHSN 625 (758)
T ss_dssp E-EEEEC-
T ss_pred e-EEEChh
Confidence 4 455554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-05 Score=92.97 Aligned_cols=192 Identities=11% Similarity=0.126 Sum_probs=123.0
Q ss_pred CCeEEEEECCCceeEEEEeCCCCCe--------------------------------------eEEEEeCCCCcEEEEEe
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPAS--------------------------------------TFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~i--------------------------------------~~l~~s~~~~~~la~g~ 894 (1131)
++.|+.+|..+++.+-++....... ..+++.+ ...++..++
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 5788888888888877765322110 1356667 555666676
Q ss_pred CC----------------CcEEEEEeecceeEEeecccc----------cCeeEEEEc-cCC---CEEEEEeCCCcEEEE
Q 001178 895 ED----------------STIQIYNVRVDEVKTKLKGHQ----------KHITGLAFS-TNL---NILVSSGSDAQLIFW 944 (1131)
Q Consensus 895 ~d----------------g~I~iwd~~~~~~~~~~~~h~----------~~V~~l~~s-~dg---~~l~s~~~Dg~v~lw 944 (1131)
.+ +.|.-+|.++|+.+-.++... .++. +... .+| ..++.++.+|.+.++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 379999999998876655321 1121 2222 467 467788999999999
Q ss_pred EcCCCceeeeeeeec----------CCCC-----------------------CCCCceEEEEcCCCcEEEEE--------
Q 001178 945 NTDTWEKRKSIAIQL----------PAGK-----------------------LPVGETRVQFHSDQVRLLVN-------- 983 (1131)
Q Consensus 945 d~~~~~~~~~~~~~~----------~~~~-----------------------~~~~v~~v~~s~d~~~l~~~-------- 983 (1131)
|..+++.+....... ..+. -...-..++++|+..++++.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999988765443211 0000 00111246777776666542
Q ss_pred --------------------------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC
Q 001178 984 --------------------------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG 1031 (1131)
Q Consensus 984 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg 1031 (1131)
..+.+..||+.+++.+-..... .++.+-.+...+.+++.++.|+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCC
Confidence 2367888999998877665432 1222212334677888899999
Q ss_pred cEEEEECCCCceeeEecCC
Q 001178 1032 SIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.||.++|+.+.++...
T Consensus 495 ~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEeeCC
Confidence 9999999999999888643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-06 Score=84.40 Aligned_cols=211 Identities=9% Similarity=0.107 Sum_probs=137.7
Q ss_pred eeEEEEeCCCCC--eeEEEEeCCCCcEEEEEeCCC--cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEE-EeCCC
Q 001178 865 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS-SGSDA 939 (1131)
Q Consensus 865 ~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-~~~Dg 939 (1131)
+.+.++. |... ...+.|+ ++.++.+++.+| .|+++|+++++.+..+.-.. ........++++.|.. .-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 4555664 4433 4889998 457777777766 89999999999888876433 3444333334555444 44588
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.+||.++.+......... ....+++|++.|+.++ ++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~---------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG---------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS---------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECCC---------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 99999999988766554321 1234446777777754 67899999999998888765310 013455677
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
|. +|+..+..-.++.|.+.|..+|+.+..+......+.........-..-.|+|+|....++++|-.=-.++
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 76 7765555546889999999999999999875433221100111123356999997666776665544433
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-06 Score=84.40 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=129.2
Q ss_pred CCCeeEEEecCCCCEEEEEe-CC--eEEEEECCCceeEEEEeCCCCCeeE--EEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GG--KVSLFNMMNFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
......+.|+ ++.+..+.+ +| .|+++|+++++.+.++.... .... +++. ++++.+..-.++.+.+||..+.
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~ 117 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNL 117 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccC
Confidence 3445788898 666555555 55 79999999999999887543 3333 4443 4556665667899999999999
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCC
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HET 986 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~ 986 (1131)
+.+.++.... ....+++|++.|+.+..++.|.++|..+.+.......... +..-..+..+.+. +|+..+.. .++
T Consensus 118 ~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~-g~~~~~lNELe~~-~G~lyan~w~~~ 192 (262)
T 3nol_A 118 RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH-GEELPELNELEWV-DGEIFANVWQTN 192 (262)
T ss_dssp CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC-CccccccceeEEE-CCEEEEEEccCC
Confidence 9998887432 2234446787777777688899999999877665544321 1111223346665 66544444 478
Q ss_pred eEEEEeCCCcccceeeecCC---------CCCCCeEEEEEccCCCEEEEEe
Q 001178 987 QLAIYDGSKMECIRQWVPQD---------VLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.|.+.|..+++.+..+.... ....-.+.|||+|+++.|++++
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999888876421 1123568999999999888888
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-05 Score=93.52 Aligned_cols=110 Identities=8% Similarity=0.076 Sum_probs=70.7
Q ss_pred cEEEEEec-CCeEEEEeC-CCCceeEEecCCCce-----------EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 512 HFIFSTAV-DGKIKAWLY-DNVGSRVDYDAPGLW-----------CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 512 ~~l~s~s~-dg~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
..++.++. ++.|.-+|. ++++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788888898 888887766543210 011222 3456666654 7899999999999
Q ss_pred eeEEEecccC---CceE-EEEEeCCCCEEEEEEc------CCcEEEEEcCCCeEEEEEecc
Q 001178 579 LKRTYIGFRK---KSAG-VVQFDTTRNRILAAGE------DNQIKFWDMDNVNMLTSTEAE 629 (1131)
Q Consensus 579 ~~~~~~~~~~---~~v~-~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~ 629 (1131)
.+..+..... ..+. ...+ .+..+++++. ++.|+.+|..+|+.+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 8877653220 0111 1111 2346666655 799999999999998877643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-05 Score=91.84 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=124.2
Q ss_pred CCeEEEEECCCceeEEEEeCCCCC--------------------------------------eeEEEEeCCCCcEEEEEe
Q 001178 853 GGKVSLFNMMNFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 853 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~s~~~~~~la~g~ 894 (1131)
++.|..+|..+++.+-++...... -..+++.+ ...++..++
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 578888888888888776532110 02356777 444555555
Q ss_pred CC----------------CcEEEEEeecceeEEeecc--cc--------cCeeEEEEccCCC---EEEEEeCCCcEEEEE
Q 001178 895 ED----------------STIQIYNVRVDEVKTKLKG--HQ--------KHITGLAFSTNLN---ILVSSGSDAQLIFWN 945 (1131)
Q Consensus 895 ~d----------------g~I~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s~dg~---~l~s~~~Dg~v~lwd 945 (1131)
.+ +.|..+|..+|+.+-.++. |. .++. +....+|+ .++.++.+|.+.++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3589999999988766542 21 2221 22234674 577888999999999
Q ss_pred cCCCceeeeeeeecCC-------CCCC--------------------------CCceEEEEcCCCcEEEEEe--------
Q 001178 946 TDTWEKRKSIAIQLPA-------GKLP--------------------------VGETRVQFHSDQVRLLVNH-------- 984 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~-------~~~~--------------------------~~v~~v~~s~d~~~l~~~~-------- 984 (1131)
..+++.+......... .... ..-..++++|+..++++..
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 9998865543321100 0000 0013467888877776632
Q ss_pred ------------------------------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEE
Q 001178 985 ------------------------------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIG 1034 (1131)
Q Consensus 985 ------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~ 1034 (1131)
++.+..||+.+++.+..+... ..+.+..+...+.++++++.|+.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEE
Confidence 367999999999987776543 2233333344567788899999999
Q ss_pred EEECCCCceeeEecCC
Q 001178 1035 VFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1035 vwd~~~~~~~~~~~~~ 1050 (1131)
.||..+|+.+.++...
T Consensus 489 a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 489 ALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEETTTCCEEEEEECS
T ss_pred EEECCCCCEEEEEeCC
Confidence 9999999999888753
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-05 Score=92.43 Aligned_cols=251 Identities=13% Similarity=0.105 Sum_probs=153.6
Q ss_pred EEecCCCCE----EEEEe-CCeEEEEECCCceeEEEEeCCCC----Cee-EEEEeCCCCcEEEEEe------CCCcEEEE
Q 001178 839 VALSKNDSY----VMSAG-GGKVSLFNMMNFKVMTTFMSPPP----AST-FLAFHPQDNNIIAIGM------EDSTIQIY 902 (1131)
Q Consensus 839 l~~s~dg~~----la~~~-dg~i~vwd~~~~~~~~~~~~~~~----~i~-~l~~s~~~~~~la~g~------~dg~I~iw 902 (1131)
++++|.+.. |++++ ++.|..+|..+|+.+-....... .+. ...+. ++.+ ++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V-~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKV-IIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEE-EECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCEE-EEEecccccCCCCeEEEE
Confidence 455443333 66665 89999999999999877654321 121 11222 4444 4454 37999999
Q ss_pred EeecceeEEeecccccC-------------------------------------e-eEEEEccCCCEEEEEeCC------
Q 001178 903 NVRVDEVKTKLKGHQKH-------------------------------------I-TGLAFSTNLNILVSSGSD------ 938 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~~-------------------------------------V-~~l~~s~dg~~l~s~~~D------ 938 (1131)
|..+|+.+-.+...... + ..+++.++...+..+..+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999887655422110 1 135666677777776655
Q ss_pred ----------CcEEEEEcCCCceeeeeeeecCCCC---CCCCceEEEEc-CCC---cEEEEE-eCCeEEEEeCCCcccce
Q 001178 939 ----------AQLIFWNTDTWEKRKSIAIQLPAGK---LPVGETRVQFH-SDQ---VRLLVN-HETQLAIYDGSKMECIR 1000 (1131)
Q Consensus 939 ----------g~v~lwd~~~~~~~~~~~~~~~~~~---~~~~v~~v~~s-~d~---~~l~~~-~d~~i~vwd~~~~~~~~ 1000 (1131)
+.|..+|.++++.+-.........- ......-+... .+| ..++.+ .+|.++++|..+|+.+.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 3799999999887654332211000 00111122222 567 345544 58999999999998876
Q ss_pred eeecCC----------CCCCCe--------------------------EEEEEccCCCEEEEEe----------------
Q 001178 1001 QWVPQD----------VLSSPI--------------------------SSAAYSCNSQLIYATF---------------- 1028 (1131)
Q Consensus 1001 ~~~~~~----------~~~~~v--------------------------~~i~~s~dg~~l~s~~---------------- 1028 (1131)
...... ....++ ..++|+|+.+++++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 554221 001111 2467788777665532
Q ss_pred -----------------------cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC
Q 001178 1029 -----------------------TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD 1085 (1131)
Q Consensus 1029 -----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D 1085 (1131)
.+|.|.-||+.+|+.+.+..... + ..++ ++.. .+.+++.++.|
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~----~~~g---~~~t-----agg~vf~gt~d 493 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--A----VWGG---TMAT-----AGDLVFYGTLD 493 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--C----CCSB---CEEE-----TTTEEEEECTT
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--C----ccCc---ceEe-----cCCEEEEECCC
Confidence 34789999999999887775321 1 0111 1111 35688889999
Q ss_pred CcEEEEecCCCccccccccCC
Q 001178 1086 GSVKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1086 g~v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|.|+.||..+++..|....|.
T Consensus 494 g~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 494 GYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp SEEEEEETTTCCEEEEEECSS
T ss_pred CeEEEEECCCCCEEEEeeCCC
Confidence 999999999999999987654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.3e-06 Score=82.67 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=127.9
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCee--EEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAST--FLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~--~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
......+.|+. +.+..+.+ +|.|+++|+++++.+..+ .. .... .+++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 34456788873 44444444 688999999999998887 32 3333 35554 456666666789999999999999
Q ss_pred EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeE
Q 001178 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQL 988 (1131)
Q Consensus 910 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i 988 (1131)
+.++... ..-..++ +|++.|+.+..++.|.++|..+.+............. -..+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~-v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP-VELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-cccccccEEe-CCEEEEEECCCCeE
Confidence 9888743 2223444 5788888777789999999999887666554331111 1234456666 66544444 37799
Q ss_pred EEEeCCCcccceeeecC----------CCCCCCeEEEEEccCCCEEEEEe
Q 001178 989 AIYDGSKMECIRQWVPQ----------DVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~----------~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.+.|..+++.+..+... .....-.+.||++|+++.|++++
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999988776542 11134678999999888777766
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6.3e-05 Score=82.06 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=146.0
Q ss_pred CeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCC-------------------CCCeeEEEEeCCCCcEEEEEe
Q 001178 835 VVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSP-------------------PPASTFLAFHPQDNNIIAIGM 894 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~-------------------~~~i~~l~~s~~~~~~la~g~ 894 (1131)
...+++++++|+++.++. ++.|..|+..+++........ ...+..+++.+++++++ ++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 356789999999666666 789999998775443211100 13578899997345544 454
Q ss_pred CCCcEEEEEeecceeEEee---cc-cccCeeEEEEcc-CCCEEEEEeC-----------------CCcEEEEEcCCCcee
Q 001178 895 EDSTIQIYNVRVDEVKTKL---KG-HQKHITGLAFST-NLNILVSSGS-----------------DAQLIFWNTDTWEKR 952 (1131)
Q Consensus 895 ~dg~I~iwd~~~~~~~~~~---~~-h~~~V~~l~~s~-dg~~l~s~~~-----------------Dg~v~lwd~~~~~~~ 952 (1131)
..+.|..+|..+++..... .+ .......+++.+ +|+++++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 5555888887655422111 11 113468899999 9987776532 367888888765532
Q ss_pred eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc--ceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC--IRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~--~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
.... .. .....++++|++++|.++. .+.|++|++..... ...+... .. ...+++.++|++.++..
T Consensus 179 ~~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 179 LLLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp EEEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEE
T ss_pred Eecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEec
Confidence 2111 10 2345799999999777653 57899999875321 1122211 23 78899999999777665
Q ss_pred c----------CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCC
Q 001178 1029 T----------DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1029 ~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
. .+.|..+|. .++.+..+....... - ..+..+++. ++.++++....+.|..+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~------~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFA------G--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTT------T--SCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEECCCCCc------c--ccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4 467888886 477666665322110 0 112234442 4566666667888999987543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.4e-06 Score=83.04 Aligned_cols=206 Identities=10% Similarity=0.041 Sum_probs=136.9
Q ss_pred eeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE--EEEccCCCEEEEEeCCCc
Q 001178 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG--LAFSTNLNILVSSGSDAQ 940 (1131)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~--l~~s~dg~~l~s~~~Dg~ 940 (1131)
+.+.++. |. .-...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -. ..... +++.. ++..+..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCE
Confidence 4455553 33 335788887 4688888889999999999999888776 22 33444 55542 244445556889
Q ss_pred EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEEE
Q 001178 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAAY 1017 (1131)
Q Consensus 941 v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~~ 1017 (1131)
+.+||.++.+........ .. ...+++|++.|++++ ++.|.++|..+.+.+..+..... .-..++.+.|
T Consensus 118 v~V~D~~Tl~~~~ti~~~-------~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-------GE--GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EEEEETTTTEEEEEEECS-------SC--CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECCcCcEEEEEeCC-------Cc--eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 999999998876655432 11 123446788877765 78899999999998887765321 0124567777
Q ss_pred ccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCC-CCCCCccccEEEEEcCCCCCeEEEEecCC
Q 001178 1018 SCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS-PNSSQTVFPLVVTSHPQEPNQLAVGLTDG 1086 (1131)
Q Consensus 1018 s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg 1086 (1131)
. +|+..+..-.++.|.+.|..+|+.+..+......+... ......-..-.|+|.|....+++||-.=-
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 7 77655544468899999999999999998653221100 00111123346999997777888775444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-05 Score=98.02 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=153.1
Q ss_pred EEEEec-CCCcEEEEEcCCC-----------eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 352 SMDFHP-FHHTLLVVGCGDG-----------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 352 ~~~fsp-dg~~llasg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
++++.| +|+ +++.|+.++ .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 778776542 5889998887643210 01122333445678889
Q ss_pred CCCEEEEEeC-CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CC-----CcEEEEe-CCCceeE
Q 001178 420 DGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DD-----KLIRVWD-LSGRKLF 491 (1131)
Q Consensus 420 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d-----~~i~iwd-~~~~~~~ 491 (1131)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++++ +++.|+ .+ ..+.+|| .+++ -.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~-W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKT-WT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTE-EE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCc-ce
Confidence 9999999984 4689999998764221 1112111 1123456667888 777777 44 5789999 4443 22
Q ss_pred EecCCc-cCe----EEEeecccCCccEEEEEecCC---------eEEEEeCCCCceeEEecCC---------CceEEEEE
Q 001178 492 QFEGHE-APV----YSVCPHQKENIHFIFSTAVDG---------KIKAWLYDNVGSRVDYDAP---------GLWCTTML 548 (1131)
Q Consensus 492 ~~~~h~-~~v----~~~~~~~~~~~~~l~s~s~dg---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 548 (1131)
.+.... .+. ....+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 221000 000 00001 12234445554443 5677887765432221111 11123444
Q ss_pred Ecc-CCCEEEEEeecCC----CCc---eEEEEeCCCCeeeEEE--ecccCCceEEEEEeCCCCEEEEEEcC---------
Q 001178 549 YSA-DGSRLFSCGTSKE----GDS---HLVEWNESEGALKRTY--IGFRKKSAGVVQFDTTRNRILAAGED--------- 609 (1131)
Q Consensus 549 ~s~-~g~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d--------- 609 (1131)
|.. +++.++.++.... ... .+.+||..+....... .........+.+..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 543 6777777764210 011 6888888877654433 22222223445677899999998754
Q ss_pred --CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC
Q 001178 610 --NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1131)
Q Consensus 610 --g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~ 652 (1131)
..+.+||..+.+....-.............+.|++++++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765432211111112234556789999998885
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0081 Score=73.98 Aligned_cols=573 Identities=12% Similarity=0.102 Sum_probs=297.8
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGV 426 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las 426 (1131)
...|+++.-..+|. +-.|+.+| +..||-..-+... .. .......|.++.-..+|. |-.
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~~~--------~~----------~~~~~~~i~~i~~d~~g~-lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQHF--------TY----------GENNNTRIYCGVIIDNTY-LYM 78 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEECS--------CT----------TSTTSSCEEEEEEETTTE-EEE
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEEEE--------cc----------CCCCCceEEEEEEcCCCc-EEE
Confidence 45799999999995 44566666 5566632211100 00 011235689988887775 445
Q ss_pred EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-----CCccCeE
Q 001178 427 AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-----GHEAPVY 501 (1131)
Q Consensus 427 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-----~h~~~v~ 501 (1131)
|+.+| +..||..+..... ........|.++.. .+|. |..++.+ -+..+|.....+..+. .....|.
T Consensus 79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEE
T ss_pred EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEE
Confidence 55555 7889987753211 11112335777754 3554 3334444 6788884333333331 1134577
Q ss_pred EEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-ecC----CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 502 SVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-YDA----PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
++.. +.++. |..++.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..+
T Consensus 150 ~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~~ 220 (758)
T 3ott_A 150 SIIR--TKDNQ-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPST 220 (758)
T ss_dssp EEEE--CTTCC-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETTT
T ss_pred EEEE--cCCCC-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCCC
Confidence 7765 33444 4445554 466777665443221 111 122488888888777555554 23588899877
Q ss_pred CeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC-----CCCCcceEEEcCCCCEEEEEE
Q 001178 577 GALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-----GLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 577 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
++... +.......|.++....++.. ..|+. +-+.+++..++.......... ....|.++....+|.+- .|+
T Consensus 221 ~~~~~-~~~l~~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT 296 (758)
T 3ott_A 221 GQIKQ-TEAFHNNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGT 296 (758)
T ss_dssp TEEEE-EEEEEEEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEE
T ss_pred CeEEe-ccCCCCCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEe
Confidence 65432 22112235777777766654 44554 458888887665432221110 11246777777777644 455
Q ss_pred CCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCc
Q 001178 652 ADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKP 731 (1131)
Q Consensus 652 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1131)
..| +.++..... ...+. ..+.
T Consensus 297 ~~G-l~~~~~~~~---~~~~~-----------------------~~~~-------------------------------- 317 (758)
T 3ott_A 297 DYG-ISLSRYNSA---LQFIP-----------------------ISQI-------------------------------- 317 (758)
T ss_dssp SSS-EEEECCCC----CEEEE-----------------------HHHH--------------------------------
T ss_pred CCc-ccccccCCc---eeEEe-----------------------cccC--------------------------------
Confidence 555 444322111 00000 0000
Q ss_pred eeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceee
Q 001178 732 RNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAV 811 (1131)
Q Consensus 732 ~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 811 (1131)
.. ......|.++....+|...+. +.+| +..++...+...
T Consensus 318 -----------------------------~~-~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~--------- 356 (758)
T 3ott_A 318 -----------------------------TG-TGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH--------- 356 (758)
T ss_dssp -----------------------------SC-SCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------
T ss_pred -----------------------------CC-CCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------
Confidence 00 001234666766666765444 3444 333332211000
Q ss_pred eceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe-C-----CCCCeeEEEEeCC
Q 001178 812 APQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM-S-----PPPASTFLAFHPQ 885 (1131)
Q Consensus 812 ~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~i~~l~~s~~ 885 (1131)
....+...... ..-....|.++.-..+|++-+.. ++.|..||..+++...-.. . ....|.++...+
T Consensus 357 ~~~~~~~~~~~------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~- 428 (758)
T 3ott_A 357 DAIWYRMGDKT------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT- 428 (758)
T ss_dssp CCEEECTTCSS------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-
T ss_pred eeEEeccCCcC------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-
Confidence 00011100000 00124568889888888765544 6689999998876543221 1 124577887766
Q ss_pred CCcEEEEEeCCCcEEEEEeecc------eeE--Eeec---c-cccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceee
Q 001178 886 DNNIIAIGMEDSTIQIYNVRVD------EVK--TKLK---G-HQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRK 953 (1131)
Q Consensus 886 ~~~~la~g~~dg~I~iwd~~~~------~~~--~~~~---~-h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~ 953 (1131)
++.+ -.|+..+-+.+++..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++...
T Consensus 429 ~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~ 507 (758)
T 3ott_A 429 AGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK 507 (758)
T ss_dssp TSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred CCCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE
Confidence 5554 45777777888886531 111 1111 1 12358999999999887744444558889987754322
Q ss_pred eeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 954 SIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 954 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
. ..........+.++....+|.+.+.+ .+.+..|+..+++... +....-....|.++... +|++.+ ++ ++.|
T Consensus 508 ~---~~~~~~~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t-~~Gl 579 (758)
T 3ott_A 508 L---FADELTGEKSPNYLLCDEDGLLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-ST-TNGL 579 (758)
T ss_dssp E---CTTTSCGGGCEEEEEECTTSCEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EE-SSCE
T ss_pred e---cCCCcCCCcccceEEECCCCCEEEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-EC-CCCe
Confidence 1 11000011356778888888877655 4679999887654322 11000013568888764 665544 44 3458
Q ss_pred EEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCC
Q 001178 1034 GVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~ 1095 (1131)
..||..+.+... .. .+ ..... ...+...+ ..|..|+.+| +..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~------~~~~~--~~~~~~~~-G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MT------NKRFT--SLLFDPKE-DCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------C------CCCCS--EEEEETTT-TEEEEECBSE-EEEEEC--
T ss_pred EEEcCCCceeEE-ec----CC------CCcee--eeEEECCC-CcEEEecCCc-eEEEChhh
Confidence 889988766432 11 01 11111 23333324 4777888888 66777754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00022 Score=83.99 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=97.2
Q ss_pred CcEEEEEeecceeEEeecc--ccc----CeeE-EEEc---cCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec----
Q 001178 897 STIQIYNVRVDEVKTKLKG--HQK----HITG-LAFS---TNLN---ILVSSGSDAQLIFWNTDTWEKRKSIAIQL---- 959 (1131)
Q Consensus 897 g~I~iwd~~~~~~~~~~~~--h~~----~V~~-l~~s---~dg~---~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~---- 959 (1131)
+.|.-+|..+|+.+-.++. |.. .+.. +.+. .+|+ .++.++.+|.++++|..+++.+.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 5799999999998876642 321 1111 2222 4674 78889999999999999988765433211
Q ss_pred --------------CCCCC---------C------------CCceEEEEcCCCcEEEEE---------------------
Q 001178 960 --------------PAGKL---------P------------VGETRVQFHSDQVRLLVN--------------------- 983 (1131)
Q Consensus 960 --------------~~~~~---------~------------~~v~~v~~s~d~~~l~~~--------------------- 983 (1131)
..... . ..-..++++|+..++++.
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00000 0 001245677776655542
Q ss_pred -------------eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCC
Q 001178 984 -------------HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 984 -------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.++.|..||+.+++.+-+..... ++..-.+...+.+++.++.|+.++.||.++|+.+.++...
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 14679999999999876665431 2222222335778888999999999999999999988753
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00034 Score=82.41 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=117.4
Q ss_pred EEEEcCCCcEEEEe-CCCceeEEecCCccCe---------EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC
Q 001178 471 IVTCGDDKLIRVWD-LSGRKLFQFEGHEAPV---------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540 (1131)
Q Consensus 471 l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 540 (1131)
++.++.++.|.-+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|.++++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 7899887765432210 11122 1257888889999999999999988876543
Q ss_pred Cc----eEE-EEEEcc---CCC-EEEEEeecC--CCCceEEEEeCCCCeeeEEEecccC---------------------
Q 001178 541 GL----WCT-TMLYSA---DGS-RLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFRK--------------------- 588 (1131)
Q Consensus 541 ~~----~v~-~~~~s~---~g~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 588 (1131)
.. .+. +..+.. +|+ .+++++... ..++.|+.+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 234 454443211 1267899999999998876543100
Q ss_pred -------------------CceEEEEEeCCCCEEEEEEc--------------------C----CcEEEEEcCCCeEEEE
Q 001178 589 -------------------KSAGVVQFDTTRNRILAAGE--------------------D----NQIKFWDMDNVNMLTS 625 (1131)
Q Consensus 589 -------------------~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 625 (1131)
......+++|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 00123567777788887663 2 5899999999999888
Q ss_pred EeccCCC----CCcce-EEEc---CCCC---EEEEEECCCcEEEEecCCCc
Q 001178 626 TEAEGGL----PSLPR-LRFN---KEGN---LLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 626 ~~~~~~~----~~i~~-v~~s---p~~~---~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+...+. ..+.. +.+. .+|+ .++.++.+|.++++|..++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 7653221 01111 2222 4674 78889999999999998884
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-05 Score=77.09 Aligned_cols=188 Identities=12% Similarity=0.108 Sum_probs=128.3
Q ss_pred CCCeeEEEecCCCCEEEEEe-C--CeEEEEECCCceeEEEEeCCCCC-eeEEEEeCCCCcEEEEEeCCCcEEEEEeecce
Q 001178 833 EDVVPCVALSKNDSYVMSAG-G--GKVSLFNMMNFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE 908 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~ 908 (1131)
......+.|+. +.+..+.+ . ..|+.+|+.+++.+......... -..+++. ++++.+..-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 45566889986 44444444 3 47999999999999988754332 1334444 45666667788999999999999
Q ss_pred eEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCe
Q 001178 909 VKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQ 987 (1131)
Q Consensus 909 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~ 987 (1131)
.+.++..... =..++ +|+..|+.+..++.|.++|..+.+............. -..+..+.+. +|+..+.. .+..
T Consensus 97 ~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~-~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 97 PRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP-LDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE-CCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-cccceeeEEe-CCEEEEEECCCCe
Confidence 9988874332 23444 5777777666788999999999877665544321111 1233345544 56544443 4779
Q ss_pred EEEEeCCCcccceeeecCC----------CCCCCeEEEEEccCCCEEEEEe
Q 001178 988 LAIYDGSKMECIRQWVPQD----------VLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~----------~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
|.+.|..+++.+..+.... ....-.+.||++|+++.|++++
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999888876331 1134568999999988888877
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-05 Score=95.36 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=131.7
Q ss_pred cEEEEEEe-cCCCcEEEEEcCCC----eEEEEECCCC-cccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 349 SVVSMDFH-PFHHTLLVVGCGDG----EITLWDVGLR-ERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 349 ~V~~~~fs-pdg~~llasg~~dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+...+|| |||++++.+-+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 68889999 99997555544433 5999999998 63321 0 10 1134688999999
Q ss_pred EEEEEeCC-----CeEEEEEecCCCccceeeeee-cCcCCeeEEEEecCCCceEEEEEc-CCCcEEEEeC-CCc-ee--E
Q 001178 423 FIGVAFTK-----HLIHLYTYQGSNDLCQSLEID-AHVGGVNDLAFSYPNKQLCIVTCG-DDKLIRVWDL-SGR-KL--F 491 (1131)
Q Consensus 423 ~las~~~d-----~~i~vwd~~~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iwd~-~~~-~~--~ 491 (1131)
.|+....| ..|.++++.++..... ..+. .+......+.|+|||+.+++.+.. ....|.++|. ++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 88887665 2578888877542211 1222 233456788999999963333322 2446788884 331 22 3
Q ss_pred Eec-CCccCeEEEeecccCCccEEEEEecC----CeEEEEeCCCCceeEE-ecCCCc--eEEEEEEccCCCEEEEEeecC
Q 001178 492 QFE-GHEAPVYSVCPHQKENIHFIFSTAVD----GKIKAWLYDNVGSRVD-YDAPGL--WCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 492 ~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+. .......++.|+ .++.+++....+ ..|..+++.+...... +..+.. .+..+.+ .++.|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 333 334455555442 222344444433 3566677664222112 222222 3444444 4566665543 3
Q ss_pred CCCceEEEEeC-------CCCeeeEEEecccCCceEEEEE----eCCCC-EEEEEEcC---CcEEEEEcCCCeE
Q 001178 564 EGDSHLVEWNE-------SEGALKRTYIGFRKKSAGVVQF----DTTRN-RILAAGED---NQIKFWDMDNVNM 622 (1131)
Q Consensus 564 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~~~~~d---g~i~iwd~~~~~~ 622 (1131)
++...|+++++ .+++....+.......+..+.+ +++++ .+++.+.. ..++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34557788885 3443133332111111222322 34554 44443332 4677788877653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-05 Score=74.96 Aligned_cols=211 Identities=9% Similarity=0.079 Sum_probs=136.5
Q ss_pred eeEEEEeCCC--CCeeEEEEeCCCCcEEEEEeCCC--cEEEEEeecceeEEeecccccCeeEEEEccCCC-EEEEEeCCC
Q 001178 865 KVMTTFMSPP--PASTFLAFHPQDNNIIAIGMEDS--TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLN-ILVSSGSDA 939 (1131)
Q Consensus 865 ~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~~Dg 939 (1131)
+.+.++. |. .-...+.|++ +.++.+.+.+| .|+.+|+.+++.+....-... ........+++ ..+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCC
Confidence 4555663 43 3467899985 56666666654 899999999998887754332 33332233344 444555688
Q ss_pred cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCCcccceeeecCCC--CCCCeEEEE
Q 001178 940 QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSKMECIRQWVPQDV--LSSPISSAA 1016 (1131)
Q Consensus 940 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~~~~~~~~~~~~~--~~~~v~~i~ 1016 (1131)
.+.+||.++.+........ .. ...+++|+..|+++. ++.|.++|..+.+.+..+..... .-..++.+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-------~~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-------GE--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-------SC--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC-------CC--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999998876655432 11 234446777777653 77899999999988887765311 013456677
Q ss_pred EccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCC-CCCccccEEEEEcCCCCCeEEEEecCCcEE
Q 001178 1017 YSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN-SSQTVFPLVVTSHPQEPNQLAVGLTDGSVK 1089 (1131)
Q Consensus 1017 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~ 1089 (1131)
+. +|+..+..-.+..|.+.|..+|+.+..+......+..... ....-..-.|+|+|....+++||-.=-.++
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~ 229 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY 229 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence 65 6765555446789999999999999999866433322100 011123356999997777777776555443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=8.2e-05 Score=80.37 Aligned_cols=228 Identities=15% Similarity=0.094 Sum_probs=138.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc-CCC-cEEEEe-CC
Q 001178 410 ISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG-DDK-LIRVWD-LS 486 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s-~d~-~i~iwd-~~ 486 (1131)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977777678999999987532 211 1 1234688999999998 455443 333 466677 56
Q ss_pred CceeEEec-CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-e-------c--CCCceEEEEEEccCCCE
Q 001178 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-------D--APGLWCTTMLYSADGSR 555 (1131)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-------~--~~~~~v~~~~~s~~g~~ 555 (1131)
++...... ........++.. .++..+++...++.|..+|......... . . ..-.....+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65432221 112223444432 2334455555688888888765422111 0 0 111234555 889988
Q ss_pred EEEEeecCCCCceEEEEeCCC-Cee--eEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC
Q 001178 556 LFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL 632 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 632 (1131)
|+.+.. ..+.|+.++... ++. ...+.. ......++++++|+.+++....+.|.+++.. ++...........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 877653 367899999864 332 122211 1134458899999877776677899999975 5543322222222
Q ss_pred CCcceEEEc---CCCCEEEEEECCC
Q 001178 633 PSLPRLRFN---KEGNLLVVTTADQ 654 (1131)
Q Consensus 633 ~~i~~v~~s---p~~~~l~~~~~dg 654 (1131)
....+++|. |+++.|++++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 357899998 8888887776543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0001 Score=80.40 Aligned_cols=255 Identities=9% Similarity=-0.005 Sum_probs=142.3
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccc--ee-c---eeccCCCCCEEEEEEcC-CC
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM--LQ-A---AIVKDSSISVSRVAWSP-DG 421 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~~~~sp-dg 421 (1131)
...+++|+++|+ ++.++..++.|..||..+++... |........ .. . .........+..+++.+ +|
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 456788999987 47778888999999987654321 110000000 00 0 00000113578999998 66
Q ss_pred CEEEEEeCCCeEEEEEecCCCccceeee-eec-CcCCeeEEEEec-CCCceEEEEEcC-----------------CCcEE
Q 001178 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLE-IDA-HVGGVNDLAFSY-PNKQLCIVTCGD-----------------DKLIR 481 (1131)
Q Consensus 422 ~~las~~~d~~i~vwd~~~~~~~~~~~~-~~~-h~~~V~~l~~s~-d~~~~~l~s~s~-----------------d~~i~ 481 (1131)
+ |..+...+.|..+|..++.. ..... ..+ .......+++.+ +|+ +.++... ++.|.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~ 168 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLI 168 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEE
T ss_pred c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEE
Confidence 5 44454455588888765432 11111 111 123478899999 887 5555432 36788
Q ss_pred EEeCCCceeEEecCCccCeEEEeecccCCccEEEEE-ecCCeEEEEeCCCCc--eeEEecCCCceEEEEEEccCCCEEEE
Q 001178 482 VWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-AVDGKIKAWLYDNVG--SRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 482 iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
.||..+..+..+.........++++ ++++.|+.+ +..+.|..|++.... ....+..... ...+++.++|++.++
T Consensus 169 ~~d~~~~~~~~~~~~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 169 KYDPSTKETTLLLKELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp EEETTTTEEEEEEEEESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred EEeCCCCEEEEeccCCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 8884433333322222334567775 455655544 667899999987521 1111111222 678999999987666
Q ss_pred EeecC------CCCceEEEEeCCCCeeeEEEecccC---CceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 559 CGTSK------EGDSHLVEWNESEGALKRTYIGFRK---KSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 559 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
..... ...+.|..+|. .++.+..+..... ..+..+++. ++..+++....+.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 53200 01356888986 4777777764321 235556553 444444444677888888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00022 Score=76.97 Aligned_cols=241 Identities=9% Similarity=0.022 Sum_probs=142.3
Q ss_pred CCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEE
Q 001178 334 DDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVS 413 (1131)
Q Consensus 334 ~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 413 (1131)
+..+.+.+..+........++|+|+|+ ++++-..++.|..||..++. .. .|. ....+.
T Consensus 18 ~~~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~ 75 (306)
T 2p4o_A 18 ELAPAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVS 75 (306)
T ss_dssp CCCCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEE
T ss_pred cCCCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCce
Confidence 344555666666557889999999997 67777778999999987532 11 111 123688
Q ss_pred EEEEcCCCCEEEEEeCCC--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC-Cc-e
Q 001178 414 RVAWSPDGNFIGVAFTKH--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS-GR-K 489 (1131)
Q Consensus 414 ~~~~spdg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~-~~-~ 489 (1131)
.++++++|+++++..... .|..+|..+++. .....+. .......++..+++. .+++...++.|.++|.. ++ .
T Consensus 76 gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 76 GLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEe
Confidence 999999999766554332 466677777653 2222221 222345556555554 56666668889899843 32 2
Q ss_pred eEEec---------CCccCeEEEeecccCCcc-EEEEEecCCeEEEEeCCCCce---eEEecCCCceEEEEEEccCCCEE
Q 001178 490 LFQFE---------GHEAPVYSVCPHQKENIH-FIFSTAVDGKIKAWLYDNVGS---RVDYDAPGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 490 ~~~~~---------~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l 556 (1131)
+.... ..-.....+ + +++. +.++-+..+.|..++++.... ...+.. ......++++++|++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~ 226 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--K--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLY 226 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--E--EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEE
T ss_pred EEEECCccccccccCCCCcCCCc--C--cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEE
Confidence 21111 111123444 2 2334 445556778999999875211 111111 1234568899999875
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEecc-cCCceEEEEEe---CCCCEEEEEEcCC
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFD---TTRNRILAAGEDN 610 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~~dg 610 (1131)
++... .+.|.+++.. ++........ ......+++|. ++++.|++++..+
T Consensus 227 va~~~----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 227 GATHI----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECBT----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEeCC----CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 55432 6789999975 6553321111 12357889998 7888777766543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00066 Score=74.46 Aligned_cols=238 Identities=11% Similarity=0.039 Sum_probs=148.6
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
...|.+..+ ..+|+.+....|+..++.+......+. ....+..++|++.++.++.+-...+.|+.+++........+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345666666 345666666678888887765544443 345588999998566666666677889999987655433333
Q ss_pred ccccCeeEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEE
Q 001178 915 GHQKHITGLAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAI 990 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~v 990 (1131)
.......++++.+.+ +++++-...+.|.+.+++...... .. ... ......++++|.+..|..++ . +.|..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~-~~~---l~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL-WQS---LEKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE-CTT---CSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EE-eCC---CCCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 333456789999754 455565667889999988643211 11 111 14568899999877777654 3 67888
Q ss_pred EeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 991 YDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 991 wd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
++.+... ...+.... -.....++|++++..|+.+. ..+.|..++++.......+... .-.+..+
T Consensus 187 ~~~dG~~-~~~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~------------~~~P~gi 251 (349)
T 3v64_C 187 SSMDGSG-RRIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAI 251 (349)
T ss_dssp EETTSCS-CEESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------------CSSEEEE
T ss_pred EeCCCCC-cEEEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC------------CCCceEE
Confidence 8876433 22222111 34678999999888777776 4578999998754332222211 1123345
Q ss_pred EEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1070 TSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.. ++.++++-...+.|...+..+++
T Consensus 252 av~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 252 TVF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE--CCEEEEecCCCCeEEEEEccCCC
Confidence 552 44666676677778877754443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00055 Score=70.06 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=130.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
-.+.+..++|+|++..|+++...++.|...|.. ++.+...+ +.+ ....-.+++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 345899999999987788888889999999998 66554211 222 25678899999998777
Q ss_pred EEeCCCeEEEEEecCCCccc--eeeee----ecCcCCeeEEEEecCCCceEEEEEcCCC--cEEEEe--CCCceeEEec-
Q 001178 426 VAFTKHLIHLYTYQGSNDLC--QSLEI----DAHVGGVNDLAFSYPNKQLCIVTCGDDK--LIRVWD--LSGRKLFQFE- 494 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~--~~~~~----~~h~~~V~~l~~s~d~~~~~l~s~s~d~--~i~iwd--~~~~~~~~~~- 494 (1131)
+.-.++.+.++++.....+. ....+ .........++|.|+++. |.++.... .|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence 76677889999987654322 11111 123456799999999985 33333333 455555 2222222221
Q ss_pred ------CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCC---------ceEEEEEEccCCCEEEEE
Q 001178 495 ------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPG---------LWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 495 ------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~~l~~~ 559 (1131)
.+...+.+++++|.. +++++.....+.+..+|.+.. ....+.... .....|+|.++|+..++
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 133467889998754 467777778888999987644 333333221 25689999999985555
Q ss_pred eecCCCCceEEEEeC
Q 001178 560 GTSKEGDSHLVEWNE 574 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~ 574 (1131)
+. .+.++.+..
T Consensus 241 sE----~n~~y~f~~ 251 (255)
T 3qqz_A 241 SE----PNRFYRFTP 251 (255)
T ss_dssp ET----TTEEEEEEC
T ss_pred cC----CceEEEEEe
Confidence 43 446666643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0034 Score=68.14 Aligned_cols=280 Identities=10% Similarity=0.047 Sum_probs=148.7
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
....+.+|.|.+++. ++++| .+|.| +...+.|+. |..... ........+.+|+|++ +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~~-------~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRTL-------VLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECCC-------CCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECCC-------CCCCCCccEEEEEecC-CeEEE
Confidence 445799999988776 56665 46654 334444432 110000 0112345688999986 44444
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE-EEeCCCcee-EEecCCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR-VWDLSGRKL-FQFEGHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~-iwd~~~~~~-~~~~~h~~~v~~~ 503 (1131)
+ +.++.|.. ..+.|+..........+.+.+..+.+.+++. .++.+. ++.|. -+| .|+.- ....++...+..+
T Consensus 95 ~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~D-gG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 95 V-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKD-SGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp E-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESS-TTSSEEEEECSCCCCEEEE
T ss_pred E-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcC-CCCCCEEeecCCCcceEEE
Confidence 4 45564433 3333443332111112345678888887776 555554 55443 333 23322 2223455678888
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.+ ++.+++.+...+..+-+|-....-..........+..+.+.++++.++.+. ++.+++.+...|+.-..+
T Consensus 169 ~~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 169 NRSP--SGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp EECT--TSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCC
T ss_pred EEcC--CCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEec
Confidence 8754 445665554433334343211111111122345688899999988776553 566766642224332222
Q ss_pred ecc---cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEecc-CCCCCcceEEEcCCCCEEEEEECCCcEEEE
Q 001178 584 IGF---RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAE-GGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659 (1131)
Q Consensus 584 ~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw 659 (1131)
... ....+..+.+.+++..+++ +.+|.| ++..+.++.-..+... .....+..+.|.+++ .+++++.+|.|.-+
T Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 242 LSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRY 318 (327)
T ss_dssp BCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEE
T ss_pred cCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEE
Confidence 211 1124777888887665555 456766 4555666555544422 112357889887655 46667788877666
Q ss_pred e
Q 001178 660 A 660 (1131)
Q Consensus 660 ~ 660 (1131)
+
T Consensus 319 ~ 319 (327)
T 2xbg_A 319 V 319 (327)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00044 Score=77.14 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=148.6
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeeccc
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGH 916 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h 916 (1131)
.|.+..+ ..+|+.+....|+.+++.+........ ....+..++|.+.++.++.+-...+.|+.+++........+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3555555 445666666789999988766554444 34568899999856666666667788999998766544433333
Q ss_pred ccCeeEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEEEe
Q 001178 917 QKHITGLAFSTNLN-ILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAIYD 992 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~-~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~vwd 992 (1131)
......+++.+.+. ++++-...+.|.+.+++....... .. .. ......++++|.+..|..+. . +.|+.++
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l--~~---~~-l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL--LW---QS-LEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE--EC---SS-CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe--ec---CC-CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 34567899987554 455555677888888876432111 11 11 14568899999888777754 3 6788888
Q ss_pred CCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEE
Q 001178 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTS 1071 (1131)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~ 1071 (1131)
...... ..+.... -.....++|++++..|+.+. ..+.|..++++.......+... .-.+..++.
T Consensus 232 ~dG~~~-~~~~~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~------------~~~P~giav 296 (386)
T 3v65_B 232 MDGSGR-RIIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG------------LPHPFAITV 296 (386)
T ss_dssp TTSCSC-EEEECSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS------------CSSEEEEEE
T ss_pred CCCCCc-EEEEECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC------------CCCceEEEE
Confidence 764332 2222211 34578999998888777776 4578999998754332222211 112344555
Q ss_pred cCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1072 HPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1072 ~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
. ++.++++-...+.|..++..+++.
T Consensus 297 ~--~~~ly~td~~~~~V~~~~~~~G~~ 321 (386)
T 3v65_B 297 F--EDSLYWTDWHTKSINSANKFTGKN 321 (386)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred E--CCEEEEeeCCCCeEEEEECCCCcc
Confidence 2 446777777778888887544443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00051 Score=70.33 Aligned_cols=216 Identities=9% Similarity=0.064 Sum_probs=131.4
Q ss_pred EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 869 TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 869 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+. +-....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445556799999999667788888899999999987 77777653 222568889999998877776677889999887
Q ss_pred CCceee-eeeeec--CCCCCCCCceEEEEcCCCcEEEEEe-CCeEEEEeCCC---cccceeeec----CCCCCCCeEEEE
Q 001178 948 TWEKRK-SIAIQL--PAGKLPVGETRVQFHSDQVRLLVNH-ETQLAIYDGSK---MECIRQWVP----QDVLSSPISSAA 1016 (1131)
Q Consensus 948 ~~~~~~-~~~~~~--~~~~~~~~v~~v~~s~d~~~l~~~~-d~~i~vwd~~~---~~~~~~~~~----~~~~~~~v~~i~ 1016 (1131)
...... ...... ...........++++|++..|.++. .....+|.+.. ...+..... ...+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 654211 111111 1122235678999999997766654 33334444431 111111100 011134678999
Q ss_pred EccCC-CEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEE
Q 001178 1017 YSCNS-QLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVI 1091 (1131)
Q Consensus 1017 ~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW 1091 (1131)
+.|.. ++++.....+.+.++|.. |+.+..+........-.... ..+=.|+|.+ +++++++ ++-+.+..+
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~---~qpEGia~d~-~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNI---KQAEGVAMDA-SGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCC---CSEEEEEECT-TCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCccccc---CCCCeeEECC-CCCEEEE-cCCceEEEE
Confidence 99965 455666677889999966 55666665442211110001 1222489988 5665555 666644444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=0.001 Score=71.82 Aligned_cols=208 Identities=9% Similarity=-0.062 Sum_probs=131.3
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
...+..++|++++..|..++ .+.|..+++.+ ......+.........+++.+.++++.++-..++.|.+++++.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34567899999877777776 58899999876 2222223333345688999874566666666788999999875
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEeCC--CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSD--AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
......+........+++++|.+..|..+... +.|...+++..... . ... . .......+++++++..|..++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~-~~~-~---~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S-LVT-E---NIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-E-EEC-S---SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-E-EEE-C---CCCCceEEEEeccCCEEEEEE
Confidence 43333333334567899999876665554432 67888887653321 1 111 1 114567899999888887764
Q ss_pred --CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|..+++.. .....+............+++. .+.+.++-...+.|..++..+|+....+.
T Consensus 183 ~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 183 SKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 56899999874 3333333211113456788885 34445554467889999988887665554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0014 Score=70.75 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=142.2
Q ss_pred EEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec----ceeEEeecccccCeeE
Q 001178 847 YVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV----DEVKTKLKGHQKHITG 922 (1131)
Q Consensus 847 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~----~~~~~~~~~h~~~V~~ 922 (1131)
+|+.+....|+..|+.+.+....+. ....+..++|++.++.++.+-..++.|+.+++.. ......+........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4666667789999998876655544 3456889999984556666666678999999876 2222223323345688
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--C-CeEEEEeCCCccc
Q 001178 923 LAFSTNL-NILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--E-TQLAIYDGSKMEC 998 (1131)
Q Consensus 923 l~~s~dg-~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d-~~i~vwd~~~~~~ 998 (1131)
+++.+.+ +++++-...+.|.+.+++....... .. .. ......++++|.+..|..+. . +.|..++.+. ..
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~--~~-~~---~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--EE-CT---TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CC
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEE--EE-CC---CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CC
Confidence 9998754 4555656778999999876432211 11 11 14568899999777666653 2 6788888763 33
Q ss_pred ceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCC
Q 001178 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPN 1077 (1131)
Q Consensus 999 ~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~ 1077 (1131)
...+.... -.....++++++++.|+.+. ..+.|..+|++.... ..+.... .....+..++.. ++.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~---------~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDE---------KRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECT---------TTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecC---------CccCCcEEEEEE--CCE
Confidence 33332211 34678999999888777776 457899999975332 2221100 011123445553 356
Q ss_pred eEEEEecCCcEEEEecCCCc
Q 001178 1078 QLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1078 ~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
++++-...++|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777777888888875443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00061 Score=77.08 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=144.8
Q ss_pred CeeEEEecC-CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC-CC----cEEEEEeecc
Q 001178 835 VVPCVALSK-NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME-DS----TIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~I~iwd~~~~ 907 (1131)
....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 456899998 456666666 478999999887655443 3456688999999 7775554543 22 233344 333
Q ss_pred eeE--EeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 908 EVK--TKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 908 ~~~--~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
... ..+. ......+++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+..
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~---~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS---GWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS---SCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC---CcceeEEEcCCCCEEEEEE
Confidence 221 2222 123467789999 67777777678899999998754321 1111111 3467899999999766653
Q ss_pred --CCeEEEEeCCC--ccc--ceeeecCC---C---------CCCCeE-EEEEc--------cCCCEEEEEecCCcEEEEE
Q 001178 985 --ETQLAIYDGSK--MEC--IRQWVPQD---V---------LSSPIS-SAAYS--------CNSQLIYATFTDGSIGVFD 1037 (1131)
Q Consensus 985 --d~~i~vwd~~~--~~~--~~~~~~~~---~---------~~~~v~-~i~~s--------~dg~~l~s~~~dg~i~vwd 1037 (1131)
.+.|+.++... +.. +..+.+.. + .-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67888877653 221 12222110 0 001223 45553 3455555544668899998
Q ss_pred CCCCceeeEecCCc-cccC---C-CCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1038 ADSLRLRCRIAPSA-YMSQ---A-SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1038 ~~~~~~~~~~~~~~-~~~~---~-~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
..|.......... .... . .........|..+++.|.++.++++-...++|+.+++.
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4565433322100 0000 0 01112234677899998666677776677788887764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0012 Score=73.51 Aligned_cols=246 Identities=13% Similarity=0.040 Sum_probs=149.4
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE-
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA- 427 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~- 427 (1131)
.-+|.+..+.+ +++++ ....|+..++.++.... +. .....+..++|++.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~-------------------~~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL-------------------LL-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE-------------------EE-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEE-------------------Ee-cCCCccEEEEEecCCCeEEEEe
Confidence 34466666643 33433 34578888887654321 11 223458899999866555544
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeec
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPH 506 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~ 506 (1131)
...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.+..|.....+. ........+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 566889999988754211 12222334678899986664 5566666788999886666544433 333567888886
Q ss_pred ccCCccEEEEEecC-CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEec
Q 001178 507 QKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIG 585 (1131)
Q Consensus 507 ~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 585 (1131)
+.. +.+.++-... +.|...+++.................++++|++..|+.+-. ..+.|..++...... +.+..
T Consensus 211 p~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~-~~~~~ 285 (386)
T 3v65_B 211 PME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHR-KAVIS 285 (386)
T ss_dssp TTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSC-EEEEC
T ss_pred cCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCee-EEEEE
Confidence 533 3444444444 78888888765444444444446789999998888877753 367899999764333 33322
Q ss_pred ccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 586 FRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 586 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
........+++. .+..+++-...+.|..++..+++....+.
T Consensus 286 ~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 286 QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 222244566663 34444555567778888866666655554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0015 Score=73.14 Aligned_cols=231 Identities=9% Similarity=0.004 Sum_probs=146.2
Q ss_pred CEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc----eeEEeecccccCee
Q 001178 846 SYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----EVKTKLKGHQKHIT 921 (1131)
Q Consensus 846 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~----~~~~~~~~h~~~V~ 921 (1131)
.+|+.+....|+..++.+........ ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 46666677889999998765544443 45678999999855666666566788998988652 22233333445678
Q ss_pred EEEEccC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---CCeEEEEeCCCcc
Q 001178 922 GLAFSTN-LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH---ETQLAIYDGSKME 997 (1131)
Q Consensus 922 ~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d~~i~vwd~~~~~ 997 (1131)
.+++.+. ++++++-...+.|.+.+++........ . .. ......+++.|.+.+|+.+. .+.|...+++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~--~-~~---~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--R-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE--E-CS---SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE--e-CC---CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 555556666788999998864432211 1 11 14568899999877777654 3678888887433
Q ss_pred cceeeecCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCC
Q 001178 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEP 1076 (1131)
Q Consensus 998 ~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~ 1076 (1131)
........ -.....|+++++++.|+.+. ..+.|..+|++.......+.... ..-.+..++.. ++
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~----------~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK----------RLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS----------TTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC----------CCCCCEEEEEe--CC
Confidence 32222221 35678999999888888776 45789999987554333322111 11123345442 34
Q ss_pred CeEEEEecCCcEEEEecCCCcc
Q 001178 1077 NQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1077 ~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
.++++-...+.|..++..+++.
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCCC
T ss_pred EEEEecCCCCeEEEEEcCCCCc
Confidence 5777777778888888655543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0022 Score=69.71 Aligned_cols=234 Identities=10% Similarity=0.046 Sum_probs=134.2
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEe---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV 909 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~ 909 (1131)
...+.++.+++ +..++++..+.|.. ..+.++.-.... .....+..+.+.+ ++.+++++ .+|.|+. ..+.++.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899976 55566665675443 333333322222 1234577888877 67777655 4565432 1222322
Q ss_pred E-EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEc--CCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCC
Q 001178 910 K-TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNT--DTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHET 986 (1131)
Q Consensus 910 ~-~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~--~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~ 986 (1131)
- ....++...+.++++.+++.+++.+...+..+-+|- .+++.. ... ....+..+++.+++..++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-----~~~---~~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-----NRT---TSRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-----ECC---SSSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-----CCC---CCCccceeEECCCCCEEEEeCCc
Confidence 1 122345567899999999888876654443334442 232221 111 12567889999999988888888
Q ss_pred eEEEEeCCCcccceeeecC-CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccc
Q 001178 987 QLAIYDGSKMECIRQWVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVF 1065 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1065 (1131)
.+++.+.+.++....+... ......+.++++.+++.+++++. ++.| .+..+.|+....+...... ....+
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~-------~~~~~ 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKV-------PSNFY 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTS-------SSCCC
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCC-------CCCeE
Confidence 8887754434433332211 11134689999999888777665 7777 4566667665554421100 11122
Q ss_pred cEEEEEcCCCCCeEEEEecCCcEEEEe
Q 001178 1066 PLVVTSHPQEPNQLAVGLTDGSVKVIE 1092 (1131)
Q Consensus 1066 ~~~v~~~p~~~~~l~s~~~Dg~v~iW~ 1092 (1131)
.+.|.+ +..+++++.+|.|.-++
T Consensus 297 --~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 --KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp --EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred --EEEEEC--CCceEEEcCCceEEEEc
Confidence 455654 34677888899766554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0009 Score=73.40 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=133.8
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~ 911 (1131)
..+..++|++.+..|..+. .+.|..+++.+......+.........+++.+.++.++++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998877777766 68899999987665444443345567899997566666666677889999987544333
Q ss_pred eecccccCeeEEEEccCCCEEE-EEeCC-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCe
Q 001178 912 KLKGHQKHITGLAFSTNLNILV-SSGSD-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQ 987 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~l~-s~~~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~ 987 (1131)
.+...-....+++++|.+..|. +-... +.|...+++....... . . ........++++|++..|..++ .+.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--~---~-~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--A---D-THLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--C---C-SSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--E---E-CCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 3333445678999998665544 44444 7788888876332111 1 1 1114567899999888887764 578
Q ss_pred EEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 988 LAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 988 i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
|..+++........+... ......+++ .++.+.++-...+.|..++..+|+....+.
T Consensus 227 I~~~~~dG~~~~~~~~~~---~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 227 IERANLDGSHRKAVISQG---LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTSCSCEEEECSS---CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEeCCCCceEEEEeCC---CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 999998753322222222 346678888 344444444466888888877777665554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00019 Score=88.01 Aligned_cols=196 Identities=12% Similarity=0.041 Sum_probs=111.0
Q ss_pred CeeEEEec-CCCCEEEEEe--CC----eEEEEECCCc-eeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEE
Q 001178 835 VVPCVALS-KNDSYVMSAG--GG----KVSLFNMMNF-KVMTT-FMSPPPASTFLAFHPQDNNIIAIGMED-----STIQ 900 (1131)
Q Consensus 835 ~i~~l~~s-~dg~~la~~~--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~ 900 (1131)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....+ ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 57789999 9999998765 22 4999999998 63211 11 1134688999 77666666654 2577
Q ss_pred EEEeeccee--EEeec-ccccCeeEEEEccCCCEEEEEeC---CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEc
Q 001178 901 IYNVRVDEV--KTKLK-GHQKHITGLAFSTNLNILVSSGS---DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFH 974 (1131)
Q Consensus 901 iwd~~~~~~--~~~~~-~h~~~V~~l~~s~dg~~l~s~~~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 974 (1131)
++++.++.. ...+. .+......+.|||||++|+..+. ...|.++|+.++..... ....... .......+.|+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~-~~~l~~~-~~~~~~s~~~~ 328 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT-LEIVRPR-EKGVRYDVQMH 328 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC-EEESSCC-CTTCCEEEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce-eEEeecC-CCCceEEEeee
Confidence 778766531 22222 22334678899999999887653 34688889887521110 0111111 11334445544
Q ss_pred CCCcEEEEEeC-----CeEEEEeCCCccccee-eecCCCCCCCeEEEEEccCCCEEEEEecCCcE--EEEEC
Q 001178 975 SDQVRLLVNHE-----TQLAIYDGSKMECIRQ-WVPQDVLSSPISSAAYSCNSQLIYATFTDGSI--GVFDA 1038 (1131)
Q Consensus 975 ~d~~~l~~~~d-----~~i~vwd~~~~~~~~~-~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i--~vwd~ 1038 (1131)
.++.+++.+.. ..|..+++.++..... +..+.. ...+..+.+. .+.++++...++.. .++++
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 44444444432 3677778765322233 333311 2244555554 33455556667754 45564
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0011 Score=75.07 Aligned_cols=251 Identities=9% Similarity=0.027 Sum_probs=147.5
Q ss_pred CeeEEEecCC--CCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---C-cEEEEEeecc
Q 001178 835 VVPCVALSKN--DSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---S-TIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~I~iwd~~~~ 907 (1131)
....++++|+ +..|.++. .+.|+.+|..+++..... ........+++++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4568999985 44555555 588999999887765543 3455689999999 77755444321 1 1333332222
Q ss_pred ee-EEeecccccCeeEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-
Q 001178 908 EV-KTKLKGHQKHITGLAFST-NLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1131)
Q Consensus 908 ~~-~~~~~~h~~~V~~l~~s~-dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 984 (1131)
.. ...+. .-.....++++| +|.++++-..++.|+.++..++...... ..... ......++|+|++.+|.++.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~~~---~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMMDT---KGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EECSC---CSSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-eccCC---CCCcccEEEeCCCCEEEEEeC
Confidence 11 01111 223456789999 6777767667888999998866542211 11111 12234699999999777654
Q ss_pred -CCeEEEEeCC--Cccc--ceeeecCCC------------CCCCeEEEEE---------ccCCCEEEEEecCCcEEEEEC
Q 001178 985 -ETQLAIYDGS--KMEC--IRQWVPQDV------------LSSPISSAAY---------SCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 985 -d~~i~vwd~~--~~~~--~~~~~~~~~------------~~~~v~~i~~---------s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.+.|+.++.. ++.. ...+.+... .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 5788887765 2321 112221100 0124677999 677776666556788999985
Q ss_pred CCCceeeEecCCcc------ccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1039 DSLRLRCRIAPSAY------MSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1039 ~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
+|... .+.+... ...........-.|..|++.|.++.++++=...++|+.+++.
T Consensus 373 -~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 56433 3332211 000001112234577899996677777777777888887764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00032 Score=84.79 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=142.8
Q ss_pred EEEecC-CCCEEEEEe-CC-----------eEEEEECCCcee--EEEEeC-CCCCeeEEEEeCCCCcEEEEEeC-CCcEE
Q 001178 838 CVALSK-NDSYVMSAG-GG-----------KVSLFNMMNFKV--MTTFMS-PPPASTFLAFHPQDNNIIAIGME-DSTIQ 900 (1131)
Q Consensus 838 ~l~~s~-dg~~la~~~-dg-----------~i~vwd~~~~~~--~~~~~~-~~~~i~~l~~s~~~~~~la~g~~-dg~I~ 900 (1131)
.+++.+ +|+.++.|+ +. .+.+||..+++- +..+.. +.....++++.. +++++++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 588999887653 333322 233345677888 8899999984 45899
Q ss_pred EEEeecceeEEeecccccC-eeEEEEccCCCEEEEEe-CC-----CcEEEEEcCCCceeeeee---eecCCCCCCCCceE
Q 001178 901 IYNVRVDEVKTKLKGHQKH-ITGLAFSTNLNILVSSG-SD-----AQLIFWNTDTWEKRKSIA---IQLPAGKLPVGETR 970 (1131)
Q Consensus 901 iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~-~D-----g~v~lwd~~~~~~~~~~~---~~~~~~~~~~~v~~ 970 (1131)
+||..+.+-...-..+... -.+++..++|+.++.|| .+ ..+.+||..+.+-..... ........ .
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-----~ 343 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-----Q 343 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-----T
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-----c
Confidence 9998876543322222222 23455667999999998 44 469999998755322100 01111110 0
Q ss_pred EEEcCCCcEEEEE----------eCCeEEEEeCCCcccceeeecCCC------CCCCeEEEEEc-cCCCEEEEEecCC--
Q 001178 971 VQFHSDQVRLLVN----------HETQLAIYDGSKMECIRQWVPQDV------LSSPISSAAYS-CNSQLIYATFTDG-- 1031 (1131)
Q Consensus 971 v~~s~d~~~l~~~----------~d~~i~vwd~~~~~~~~~~~~~~~------~~~~v~~i~~s-~dg~~l~s~~~dg-- 1031 (1131)
..+..++...+.+ ....+..||..+............ ....-.++.|. .+++++++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1122333333332 245678899887654433222110 01123455554 4788888888543
Q ss_pred ---------cEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecC-----------CcEEEE
Q 001178 1032 ---------SIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----------GSVKVI 1091 (1131)
Q Consensus 1032 ---------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----------g~v~iW 1091 (1131)
.|.+||..+..-....... ++.. .... .....| ++.+++.||.+ ..+.+|
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~--mp~~------R~~~-~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y 493 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNG--LYFA------RTFH-TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY 493 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTC--CSSC------CBSC-EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCC--CCCC------cccC-CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence 6788888776543322011 1111 1111 233445 67899999865 468999
Q ss_pred ecCCCccccccccCC
Q 001178 1092 EPSETERKWGVAVPV 1106 (1131)
Q Consensus 1092 ~~~~~~~~w~~~~p~ 1106 (1131)
|+.+. +|...++.
T Consensus 494 dp~t~--~W~~~~~~ 506 (656)
T 1k3i_A 494 VPEQD--TFYKQNPN 506 (656)
T ss_dssp EGGGT--EEEECCCC
T ss_pred cCCCC--ceeecCCC
Confidence 99764 48765543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0046 Score=65.58 Aligned_cols=197 Identities=10% Similarity=0.175 Sum_probs=125.8
Q ss_pred CCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCC---CCc---EEEEEeC---CCcEEEEEee--cceeEE
Q 001178 844 NDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ---DNN---IIAIGME---DSTIQIYNVR--VDEVKT 911 (1131)
Q Consensus 844 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---~~~---~la~g~~---dg~I~iwd~~--~~~~~~ 911 (1131)
...+++... .+.+.+||+ +++.++.+.. +.+..+..-|+ +++ ++++... +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444444 678999999 8888888753 66788777761 111 3333333 5789999884 333 44
Q ss_pred eecc------cc-cCeeEEEE--ccC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 912 KLKG------HQ-KHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 912 ~~~~------h~-~~V~~l~~--s~d-g~-~l~s~~~Dg~v~lwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.+.. .. ..+..+++ ++. ++ ++++...+|.+..|++.. +............+ ..+..++..+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCC
Confidence 4321 11 55677888 774 44 688888899999999843 22222222222222 578889999988
Q ss_pred cEEEEEe-CCeEEEEeCC-----CcccceeeecCCCCCCCeEEEEE--ccCCC-EEEEEe-cCCcEEEEECC-CCceeeE
Q 001178 978 VRLLVNH-ETQLAIYDGS-----KMECIRQWVPQDVLSSPISSAAY--SCNSQ-LIYATF-TDGSIGVFDAD-SLRLRCR 1046 (1131)
Q Consensus 978 ~~l~~~~-d~~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~i~~--s~dg~-~l~s~~-~dg~i~vwd~~-~~~~~~~ 1046 (1131)
..|+++. +..|..|+.+ +++.+..+.. ......+..|++ .++++ ||++++ .++++.|||.+ +.+.+..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 8888876 5567777754 2444444321 112457888888 55666 777777 56799999997 6777777
Q ss_pred ec
Q 001178 1047 IA 1048 (1131)
Q Consensus 1047 ~~ 1048 (1131)
+.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0053 Score=68.59 Aligned_cols=208 Identities=9% Similarity=-0.062 Sum_probs=133.6
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCc----eeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeec
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNF----KVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRV 906 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~ 906 (1131)
...+..++|++.+..|..++ .+.|+.+++.+. .....+.........+++.+.+++++++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678999999877777776 588999998762 233333334456889999874566666666778899998876
Q ss_pred ceeEEeecccccCeeEEEEccCCCEEEEEe-C-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSG-S-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH 984 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 984 (1131)
......+........+|++.|.+.+|.... . .+.|...+++....... .. . .-.....+++++++..|..++
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~--~~---~-~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VT---E-NIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE--EC---S-SCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE--EE---C-CCCceEEEEEEeCCCEEEEEE
Confidence 544444443445578999999766655544 2 36788888876432111 11 1 114567899999888888765
Q ss_pred --CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 --ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 --d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|..+|++... ...+......-....++++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 265 ~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 265 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp TTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5689999987543 33332221113455677773 33444444466889999988887766654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0028 Score=71.46 Aligned_cols=256 Identities=9% Similarity=0.003 Sum_probs=148.5
Q ss_pred CeeEEEecC-CCCEEEEEe-C-CeEEEEECCCceeEEEEeCC---CCCeeEEEE-------eCCCCcEEEEEeCCC-c--
Q 001178 835 VVPCVALSK-NDSYVMSAG-G-GKVSLFNMMNFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGMEDS-T-- 898 (1131)
Q Consensus 835 ~i~~l~~s~-dg~~la~~~-d-g~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg-~-- 898 (1131)
....|+|+| +...|.++. . +.|++.|+.++......... ......++| ++ ++..|.++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 567899998 455555555 3 56999999988776655432 235889999 99 666555555443 2
Q ss_pred ----EEEEEeec-ceeE-----EeecccccCeeEEEEccC-CCEEEEEeCCCcEEEEEcC-------CCce------e--
Q 001178 899 ----IQIYNVRV-DEVK-----TKLKGHQKHITGLAFSTN-LNILVSSGSDAQLIFWNTD-------TWEK------R-- 952 (1131)
Q Consensus 899 ----I~iwd~~~-~~~~-----~~~~~h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~-------~~~~------~-- 952 (1131)
|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 66665343 2221 122211 23457889995 5556666778889999997 4432 0
Q ss_pred --eeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCC--Cccc--ceeeecC---CCC---------CCCe
Q 001178 953 --KSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGS--KMEC--IRQWVPQ---DVL---------SSPI 1012 (1131)
Q Consensus 953 --~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~--~~~~--~~~~~~~---~~~---------~~~v 1012 (1131)
......... ......++|+|+|.+|.++. ...|+.++.. .+.. ...+.+. .+. -...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 011122221 13457899999999766654 5678885543 3321 1122221 000 1123
Q ss_pred E-EEEEc-------cCCCEEEEEecCCcEEEEECCCCceeeEecCCccc------------cCCCCCCCCccccEEEEEc
Q 001178 1013 S-SAAYS-------CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM------------SQASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1013 ~-~i~~s-------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~v~~~ 1072 (1131)
. .++.. ++|.+.++=...+.|+.++ .+|. +..+.+.... ..........-.|..|++.
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 45554 4566555555678999999 5564 4444432110 0001112233567789998
Q ss_pred CCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1073 PQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
+.++.++++=...++|+.+++..+.
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 8546677766677889998887654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.89 E-value=0.011 Score=63.47 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=140.9
Q ss_pred CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEecCCCcccee
Q 001178 369 DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI-GVAFTKHLIHLYTYQGSNDLCQS 447 (1131)
Q Consensus 369 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~~~~~~~~~ 447 (1131)
...|+..|+.+....... .. .....+..++|++.+..| .+-...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~-----------------~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATI-----------------VV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEE-----------------EE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEE-----------------Ee-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 568999999875421110 01 112356789999965554 4445668899999887632211
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEEeecccCCccEEEEEe--cCCeEE
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTA--VDGKIK 524 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~ 524 (1131)
.+...-.....+++.+.+.. ++++-...+.|.+++..|.....+. ........+++.+.. ..|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEE
Confidence 12222345778999976654 5566667789999997776554443 344567888886543 3444443 357888
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
..+++...........-...+.+++++++..|+.+-. ..+.|..+|.... ..+.+..........+++.. +..++
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~-~~lyw 223 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFE-DILYW 223 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC-SCEEEECSCCSCEEEEEEET-TEEEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeC-CEEEE
Confidence 8887754433333333446789999998888887753 3678999997643 33333221222445566642 33444
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEe
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
+-...+.|..++..+++....+.
T Consensus 224 td~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 224 TDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred EecCCCeEEEEECCCCCceEEEe
Confidence 54566788888887776555544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0025 Score=72.05 Aligned_cols=240 Identities=9% Similarity=0.123 Sum_probs=135.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC----cEEEEeC
Q 001178 411 SVSRVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK----LIRVWDL 485 (1131)
Q Consensus 411 ~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~----~i~iwd~ 485 (1131)
....|+|+| ++..|.++...+.|+.+|..++.. . .+.........++|+++++. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-~---~~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-S---TVYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-E---EEECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-E---EEecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 455666665557899999887542 2 23334456889999999984 333433222 3333444
Q ss_pred CCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-CCCceEEEEEEccCCCEEEEEeec
Q 001178 486 SGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-APGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 486 ~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 22221 223455666542 45666666678899999988655422222 22235678999999997766643
Q ss_pred CCCCceEEEEeCCC--Cee--eEEEeccc------C--------CceE-EEEEe--------CCCCEEEEEEcCCcEEEE
Q 001178 563 KEGDSHLVEWNESE--GAL--KRTYIGFR------K--------KSAG-VVQFD--------TTRNRILAAGEDNQIKFW 615 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~--~~~--~~~~~~~~------~--------~~v~-~~~~s--------~~~~~l~~~~~dg~i~iw 615 (1131)
..+.|..++... +.. ...+.+.. + .... .++.. +++..+++-...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 267888877542 322 22232210 0 0112 45553 334444554556788888
Q ss_pred EcCCCeEEEEEec---------cC------CCCCcceEEEcCC-CCEEEEEECCCcEEEEec
Q 001178 616 DMDNVNMLTSTEA---------EG------GLPSLPRLRFNKE-GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 616 d~~~~~~~~~~~~---------~~------~~~~i~~v~~sp~-~~~l~~~~~dg~i~iw~~ 661 (1131)
+. .+........ .+ .......++++|+ +.++++-..++.|+.++.
T Consensus 368 ~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 TP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp CT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 83 4544433321 00 0113567888884 554444445667777765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0058 Score=65.71 Aligned_cols=210 Identities=12% Similarity=0.016 Sum_probs=130.2
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC-EEE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN-FIG 425 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la 425 (1131)
...+.+++|++.+..++.+-...+.|..++..++..... +....-.....+++.+.+. ++.
T Consensus 34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~ 95 (318)
T 3sov_A 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW 95 (318)
T ss_dssp EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence 346789999997666777777788999999876632110 1111223466899998555 445
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEec-CCccCeEEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFE-GHEAPVYSV 503 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~ 503 (1131)
+-...+.|.++++++... .. .+.........+++.|.+.. ++++- +..+.|...+..|.....+. ..-.....+
T Consensus 96 ~d~~~~~I~~~~~dG~~~-~~--l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 96 TDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred EECCCCEEEEEECCCCcE-EE--EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 555678899999876432 11 12234456789999997664 34443 34577888887776554442 223456788
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++++.. +.+.++-+..+.|..+|++.................+++. +..++.+.. ..+.|..++..+|+....+
T Consensus 172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~---~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW---STHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET---TTTEEEEEETTTCCSCEEE
T ss_pred EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec---CCCeEEEEECCCCCceEEE
Confidence 886533 3455555677899999987644443333334456677775 334444432 3678888888777665555
Q ss_pred e
Q 001178 584 I 584 (1131)
Q Consensus 584 ~ 584 (1131)
.
T Consensus 246 ~ 246 (318)
T 3sov_A 246 H 246 (318)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.007 Score=68.31 Aligned_cols=239 Identities=8% Similarity=0.092 Sum_probs=135.4
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC---Cc-EEEE
Q 001178 410 ISVSRVAWSPD--GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD---KL-IRVW 483 (1131)
Q Consensus 410 ~~V~~~~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d---~~-i~iw 483 (1131)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34668999995 444555544488999998776532 2333445689999999999 55555421 22 3333
Q ss_pred eCCCcee--EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE-e-cCCCceEEEEEEccCCCEEEEE
Q 001178 484 DLSGRKL--FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD-Y-DAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 484 d~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~-~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+..+... ..+. .-.....+++++. ++.+.++-..++.|+.++..++..... + ......-..++++|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222111 1111 1233445666542 445555666778899999875554121 1 1122233579999999977766
Q ss_pred eecCCCCceEEEEeCC--CCee--eEEEeccc--------------CCceEEEEE---------eCCCCEEEEEEcCCcE
Q 001178 560 GTSKEGDSHLVEWNES--EGAL--KRTYIGFR--------------KKSAGVVQF---------DTTRNRILAAGEDNQI 612 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~--------------~~~v~~~~~---------s~~~~~l~~~~~dg~i 612 (1131)
.. ..+.|+.++.. ++.. ...+.+.. -.....+++ .+++.++++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 36788887754 3322 12222210 012455888 6666666665667889
Q ss_pred EEEEcCCCeEEEEEeccCC----------------CCCcceEEEc-CCCCEEEEEECCCcEEEEec
Q 001178 613 KFWDMDNVNMLTSTEAEGG----------------LPSLPRLRFN-KEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~----------------~~~i~~v~~s-p~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.++. ++... .+...+. ......++++ ++|.++++=..++.|+.+++
T Consensus 368 ~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99985 55433 3322111 1124578888 55555555455667777665
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.016 Score=70.29 Aligned_cols=217 Identities=8% Similarity=-0.050 Sum_probs=130.6
Q ss_pred eccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCC
Q 001178 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGN 422 (1131)
Q Consensus 343 ~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~ 422 (1131)
.+.....+..++|++.+.+|+.+-...+.|+.+++........ ...++...-.....|++.+.++
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCCCCcceeeeeecCC
Confidence 3345567889999997666777777778899999875321100 0002222344567899998776
Q ss_pred EEEEE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEE-cCCCcEEEEeCCCceeEEecC-CccC
Q 001178 423 FIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC-GDDKLIRVWDLSGRKLFQFEG-HEAP 499 (1131)
Q Consensus 423 ~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~-h~~~ 499 (1131)
.|..+ ...+.|.+.++.+.. ... .+.........|++.|.+.. ++++- +..+.|.+.+..|.....+.. .-..
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~-~~~--l~~~~l~~P~gIaVDp~~g~-LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVK-RKT--LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSS-EEE--EEECTTCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred cEEEEecCCCeEEEEeCCCCe-EEE--EEeCCCCCcceEEEecCCCC-EEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 55544 566889999987643 221 12234456889999998764 33443 334778888887876665543 2356
Q ss_pred eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC--CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 500 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
...|++.+.. +.+.++-...+.|...+++........... -....+|++ .+.+|+.+.. ..+.|...+..+|
T Consensus 560 P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 560 PNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSANRLTG 633 (791)
T ss_dssp EEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred ceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---CCCEEEEEeCCCC
Confidence 7888886543 344444456678999998765544443322 123445555 3445555532 2567777777777
Q ss_pred eeeEEEe
Q 001178 578 ALKRTYI 584 (1131)
Q Consensus 578 ~~~~~~~ 584 (1131)
+.+..+.
T Consensus 634 ~~~~~l~ 640 (791)
T 3m0c_C 634 SDVNLLA 640 (791)
T ss_dssp CCCEEEE
T ss_pred cceEEee
Confidence 6655554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.046 Score=66.22 Aligned_cols=211 Identities=10% Similarity=-0.015 Sum_probs=127.7
Q ss_pred CCCEEEEEEcCCCCEEE-EEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCC
Q 001178 409 SISVSRVAWSPDGNFIG-VAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486 (1131)
Q Consensus 409 ~~~V~~~~~spdg~~la-s~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~ 486 (1131)
...+..|+|++.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.+..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 45678999999655544 4455678999998763210 111122324456788999988865 56677778899999977
Q ss_pred CceeEEec-CCccCeEEEeecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 487 GRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 487 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
|+....+. ........|++.+.. +.++++-.. .+.|...+++.......+...-.....|++++.+..|+.+-.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--- 577 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--- 577 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---
Confidence 77665554 334457888886543 233344323 378888888765554444444457899999998888887743
Q ss_pred CCceEEEEeCCCCeeeEEEeccc-CCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCCCeEEEEE
Q 001178 565 GDSHLVEWNESEGALKRTYIGFR-KKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTST 626 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 626 (1131)
....|...++........+.... -.....+++. +.+|+.+ ...+.|...+..+++.+..+
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 35689999986443333333211 1123344443 3344444 34566777776666555444
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.13 Score=55.56 Aligned_cols=261 Identities=9% Similarity=0.103 Sum_probs=158.6
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..++.+.|+.++..+....- ...+.-++|..+.++.-. ..++.|||+++...+....... .|..-.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 44788899888665533222 223455788887666654 7899999999999998887655 45555665433
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|+-|++.......+.+..|..
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~------------------------------------------------- 147 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS------------------------------------------------- 147 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchh-------------------------------------------------
Confidence 444443 558999998653222222211110
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
-...+|.....+++.++++..|- .|.+.+|..+.
T Consensus 148 ---------------------------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 148 ---------------------------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp ---------------------------------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred ---------------------------------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 01245556666777777765543 25566665544
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC---CCEEEEEe----CCeEEEEECCCc-------
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN---DSYVMSAG----GGKVSLFNMMNF------- 864 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d---g~~la~~~----dg~i~vwd~~~~------- 864 (1131)
....+ + ++|......+.+..+ .+.++.+. .++++|.++...
T Consensus 189 ~~sQ~------------------------i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 189 KVSQP------------------------I-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp CCEEE------------------------E-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred cccch------------------------h-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 21110 0 122222222221111 11333333 378999988532
Q ss_pred -eeEEE-Ee---CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 865 -KVMTT-FM---SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 865 -~~~~~-~~---~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
+.... +- ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+--...|..-+.+....-++.....|
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~G 322 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTC
T ss_pred cceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCc
Confidence 11111 11 1234467888998 667888899999999999999999988877777887777776666777777899
Q ss_pred cEEEEEcCCCc
Q 001178 940 QLIFWNTDTWE 950 (1131)
Q Consensus 940 ~v~lwd~~~~~ 950 (1131)
.|.--.++...
T Consensus 323 qVl~v~v~e~~ 333 (494)
T 1bpo_A 323 QVLSVCVEEEN 333 (494)
T ss_dssp EEEEEEECTTT
T ss_pred eEEEEEEcccc
Confidence 88877777644
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00055 Score=82.56 Aligned_cols=207 Identities=9% Similarity=-0.065 Sum_probs=124.7
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCC----ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMN----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
..+..++|++++..|..+. .+.|+.+++.+ ......+.........|++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789999888888776 57899999875 22222222222345678888646666666566788999998755
Q ss_pred eeEEeecccccCeeEEEEccCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-
Q 001178 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGS-D-AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH- 984 (1131)
Q Consensus 908 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 984 (1131)
.....+.........|+++|++.+|+.+.. . +.|...++....... ... . .......|+++|++..|+.+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---E-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---S-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---C-CCCCccEEEEeccCCEEEEEec
Confidence 443333333345678999987655554432 2 678777776532111 110 0 113456799999887777754
Q ss_pred -CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEec
Q 001178 985 -ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 985 -d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1048 (1131)
.+.|.++++.... ...+...........+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 5679999987432 2333221111223445566443 344444456899999988888776664
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.047 Score=61.52 Aligned_cols=162 Identities=14% Similarity=0.111 Sum_probs=96.5
Q ss_pred cEEEEEEec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE-------cCC
Q 001178 349 SVVSMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-------SPD 420 (1131)
Q Consensus 349 ~V~~~~fsp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-------spd 420 (1131)
....|+|+| ++..|+++-...+.|++.|..++....... .-.........++| +++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~----------------~~~~~~~~p~~ia~~~~~~~~d~~ 203 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLN----------------INTIPTNRIRSIAFNKKIEGYADE 203 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEEC----------------CTTSSCSBEEEEEECCCBTTTBCT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEc----------------cCccccCCCcEEEEeecccccCCC
Confidence 578999999 455566665555779999988776543100 00112346899999 999
Q ss_pred CCEEEEEeCCC-------eEEEEEecC-CCccc-e-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-C----
Q 001178 421 GNFIGVAFTKH-------LIHLYTYQG-SNDLC-Q-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-L---- 485 (1131)
Q Consensus 421 g~~las~~~d~-------~i~vwd~~~-~~~~~-~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~---- 485 (1131)
|++|.++...+ .|.+.+... +.... . ...+.. -.....++++|++.. ++++-..++.|..+| .
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~ 281 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK 281 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence 99666665543 255665443 22210 0 011211 123467889996554 667777888899999 4
Q ss_pred ---CCce-----------eEEe-c-CCccCeEEEeecccCCccE-EEEEecCCeEEEEeCCC
Q 001178 486 ---SGRK-----------LFQF-E-GHEAPVYSVCPHQKENIHF-IFSTAVDGKIKAWLYDN 530 (1131)
Q Consensus 486 ---~~~~-----------~~~~-~-~h~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~ 530 (1131)
++.. ...+ . +.......++|++ ++++ .++-+....|+.++.+.
T Consensus 282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCC
Confidence 3443 1121 1 2233457888865 4564 44556678888876643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.021 Score=60.05 Aligned_cols=205 Identities=11% Similarity=0.053 Sum_probs=126.4
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-----CC--CeeEEEE---eCCCCcEEEEEeC------
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-----PP--ASTFLAF---HPQDNNIIAIGME------ 895 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-----~~--~i~~l~~---s~~~~~~la~g~~------ 895 (1131)
-...+++|.+....+..++ .++|..|+..++......... .. .+..+.+ .| +++++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 3345789988666666666 799999999866544332211 11 3578999 68 6888886542
Q ss_pred -------CCcEEEEEee---cceeEEeec--ccc-----------cCeeEEEEccCCCEEEEEeCC-CcEEEEEcCCCce
Q 001178 896 -------DSTIQIYNVR---VDEVKTKLK--GHQ-----------KHITGLAFSTNLNILVSSGSD-AQLIFWNTDTWEK 951 (1131)
Q Consensus 896 -------dg~I~iwd~~---~~~~~~~~~--~h~-----------~~V~~l~~s~dg~~l~s~~~D-g~v~lwd~~~~~~ 951 (1131)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 5779999998 776654332 221 247899999999999998888 877777666532
Q ss_pred eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCccc--ceeee-cCCCCCCCeEEE-EEccCCCEEEE
Q 001178 952 RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMEC--IRQWV-PQDVLSSPISSA-AYSCNSQLIYA 1026 (1131)
Q Consensus 952 ~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~--~~~~~-~~~~~~~~v~~i-~~s~dg~~l~s 1026 (1131)
........+..........|+++|+|..|++. ..+.+..+|+.+... +..-. +....-.....+ ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 22222222222223457799999999988875 478899999884322 11100 110011233443 33457887444
Q ss_pred E-ecCCcEEEEECCC
Q 001178 1027 T-FTDGSIGVFDADS 1040 (1131)
Q Consensus 1027 ~-~~dg~i~vwd~~~ 1040 (1131)
+ ...+.+.+.+.+.
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 4 4556555555443
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.51 E-value=6.2e-05 Score=60.41 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhhhhccHHHHHHHHHHhcCCC
Q 001178 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFF 35 (1131)
Q Consensus 1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~ 35 (1131)
|++++.||.+||+.||+|.||..||.+|++||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999983
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.11 Score=56.12 Aligned_cols=237 Identities=11% Similarity=0.111 Sum_probs=145.9
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
+.-.+|..+ ++|.-. ..++.|+|+++.+.++...+ ...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 344567666 566554 67999999999887763221 2356666665443 444443 45
Q ss_pred eEEEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEc------CCCcEEEEeCCCceeEEecCCccCeE
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~h~~~v~ 501 (1131)
.|.-|++.+.....+ .+.-| ...|..-..++|.++ ++++|= -.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~ 202 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 202 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccccccchheeeeeeeE
Confidence 799999976443322 23333 245777888899996 333332 24678899988888888899987766
Q ss_pred EEeecccCCccEEE-EEec---CCeEEEEeCCCC---ce-----eEEec----CCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 502 SVCPHQKENIHFIF-STAV---DGKIKAWLYDNV---GS-----RVDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~-s~s~---dg~i~~wd~~~~---~~-----~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+.+........|+ .+.. .+.+++-++... .. ...+. ...+-..++..++.-..+.....
T Consensus 203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---- 278 (494)
T 1bpo_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (494)
T ss_dssp EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence 66554333222333 3333 278899888643 11 11111 11334567888888888877775
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 620 (1131)
-|.|++||++++.++..-+-..+ .+...+......-+++....|.|.--.++..
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 89999999999998876654333 5555555544455555556665555444443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0095 Score=63.17 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC----CC---E-EEEEeC--CCcEEEEEcC--CCceeee
Q 001178 887 NNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN----LN---I-LVSSGS--DAQLIFWNTD--TWEKRKS 954 (1131)
Q Consensus 887 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d----g~---~-l~s~~~--Dg~v~lwd~~--~~~~~~~ 954 (1131)
..+++.....+-+.+||+ +|+.+..+.. +.+..+..-|+ |+ + +++.-. +++|.+|+++ +++ ...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666667788999999 8888888764 56777777663 22 2 333333 5789999774 322 111
Q ss_pred eeeec--CCCCCCCCceEEEE--cCC-Cc-EEEE-EeCCeEEEEeCC-------CcccceeeecCCCCCCCeEEEEEccC
Q 001178 955 IAIQL--PAGKLPVGETRVQF--HSD-QV-RLLV-NHETQLAIYDGS-------KMECIRQWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 955 ~~~~~--~~~~~~~~v~~v~~--s~d-~~-~l~~-~~d~~i~vwd~~-------~~~~~~~~~~~~~~~~~v~~i~~s~d 1020 (1131)
. ... +.......+..+++ +|. ++ ++++ ..++.+..|++. +.+.++.+... +.+-.+...+.
T Consensus 116 i-~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 116 M-TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp C-SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred c-cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 1 000 10011145566777 774 44 4444 457899998882 34556666553 57888899999
Q ss_pred CCEEEEEecCCcEEEEECC-----CCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEe-cCCcEEEEecC
Q 001178 1021 SQLIYATFTDGSIGVFDAD-----SLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGL-TDGSVKVIEPS 1094 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~-~Dg~v~iW~~~ 1094 (1131)
..+|+.+-+|..|..|+.+ +++.+..+.... -...+..+.+-..+....+|++.+ .++++.+||..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~--------l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH--------LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS--------BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc--------cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999999777777755 344554442211 011244455544443222455555 68899999996
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.06 Score=58.75 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=63.3
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCcee--EEEEe---CCCCCeeEEEEeCC---CCcEEEEEeCC-----CcEE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV--MTTFM---SPPPASTFLAFHPQ---DNNIIAIGMED-----STIQ 900 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~d-----g~I~ 900 (1131)
.....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+|+ ++.+.++-..+ +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 346799999999977665589999998 4432 22221 12356889999993 25555544433 5688
Q ss_pred EEEeecce-----eE-Eeec---ccccCeeEEEEccCCCEEEEEe
Q 001178 901 IYNVRVDE-----VK-TKLK---GHQKHITGLAFSTNLNILVSSG 936 (1131)
Q Consensus 901 iwd~~~~~-----~~-~~~~---~h~~~V~~l~~s~dg~~l~s~~ 936 (1131)
.|+...+. .+ ..+. +.......++|.|||.++++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88876431 11 2233 1111236899999998777754
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.061 Score=58.69 Aligned_cols=230 Identities=12% Similarity=0.100 Sum_probs=123.2
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCCce-eEEEEe---CCCCCeeEEEEeCC---CCcEEEEEeC---C----CcE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGME---D----STI 899 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~I 899 (1131)
.....|+|.|||+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999777666899999974 444 222221 12346889999994 3555554432 3 567
Q ss_pred EEEEeecc-------eeE-Eeecc-cccCeeEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCcee-----
Q 001178 900 QIYNVRVD-------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWEKR----- 952 (1131)
Q Consensus 900 ~iwd~~~~-------~~~-~~~~~-h~~~V~~l~~s~dg~~l~s~~~D-------------g~v~lwd~~~~~~~----- 952 (1131)
..|+.... +.+ ..+.. .......|+|.|||.++++.+.. |.|.-.+.+..-..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77776543 111 11221 11124679999999887775432 34554544431000
Q ss_pred eeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe--CC--eEEEEeCCCcc------------------cceeeecCCCCC
Q 001178 953 KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ET--QLAIYDGSKME------------------CIRQWVPQDVLS 1009 (1131)
Q Consensus 953 ~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~--~i~vwd~~~~~------------------~~~~~~~~~~~~ 1009 (1131)
...... .+. .....++|+| +|.+.++-. +. .|.+.. .+. .+..+.. ..
T Consensus 188 ~~~i~a--~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~---~~ 258 (354)
T 3a9g_A 188 NSPIWS--YGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS---ET 258 (354)
T ss_dssp TCCEEE--ECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT---CC
T ss_pred CCcEEE--Ecc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC---CC
Confidence 000000 011 2456899999 566555522 21 243332 221 1111101 13
Q ss_pred CCeEEEEEc-------cCCCEEEEEecCCcEEEEECCCC-ceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1010 SPISSAAYS-------CNSQLIYATFTDGSIGVFDADSL-RLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1010 ~~v~~i~~s-------~dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
.....++|. .+|+++++....+.|...+++.. +...... ... ...-.+..+++.| |+.++++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~------~~~~rp~~v~~~p-DG~lyv~ 328 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK------NVFGRLRDVVIDD-DGGILIS 328 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT------TTSCCEEEEEECT-TSCEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc------CCCCCeeEEEECC-CCcEEEE
Confidence 467888983 57777776666778888888753 3211111 000 0112355788888 5666666
Q ss_pred Ee
Q 001178 1082 GL 1083 (1131)
Q Consensus 1082 ~~ 1083 (1131)
..
T Consensus 329 ~~ 330 (354)
T 3a9g_A 329 TS 330 (354)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.086 Score=57.49 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=118.6
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~ 423 (1131)
-...+.++|.|||+ ++++ ..+|.|+++| .+++ .. +. ++ . +..........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~---~~--~~-------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KL---VA--SF-------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EE---EE--EC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eE---ee--cc-------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 35688999999997 5554 5569999997 3443 11 00 00 0 11122356889999998 444
Q ss_pred EEEEeC----C----CeEEEEEecCCC-cc---ceee-eee-cCcCCeeEEEEecCCCceEEEEEcC-------------
Q 001178 424 IGVAFT----K----HLIHLYTYQGSN-DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCGD------------- 476 (1131)
Q Consensus 424 las~~~----d----~~i~vwd~~~~~-~~---~~~~-~~~-~h~~~V~~l~~s~d~~~~~l~s~s~------------- 476 (1131)
|.++.. + ..|..|+...+. .+ +... .+. +.......++|.|||. ++++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 444332 3 567788876541 11 1111 122 1112346799999997 5555432
Q ss_pred CCcEEEEeCCCc----------eeEEecCCccCeEEEeecccCCccEEEEEecCC---eEEEEeCCC--------C----
Q 001178 477 DKLIRVWDLSGR----------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG---KIKAWLYDN--------V---- 531 (1131)
Q Consensus 477 d~~i~iwd~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~--------~---- 531 (1131)
.+.|.-.+..|+ .+. ..+|.. ...++|++. ++.++++-...+ .|.+..-.. .
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGR 244 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCC
Confidence 134555554443 111 123333 456777652 334444332221 132221100 0
Q ss_pred ----ceeEEecCCCceEEEEEEc-------cCCCEEEEEeecCCCCceEEEEeCCCC-eee--EEEecccCCceEEEEEe
Q 001178 532 ----GSRVDYDAPGLWCTTMLYS-------ADGSRLFSCGTSKEGDSHLVEWNESEG-ALK--RTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 532 ----~~~~~~~~~~~~v~~~~~s-------~~g~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~s 597 (1131)
.....+.........++|. .+|+++++... .+.|...++... +.. ..+.......+..+++.
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~ 320 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVID 320 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEEC
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCCCCCeeEEEEC
Confidence 1112221223357788883 56665555432 567888777643 322 22322123357778888
Q ss_pred CCCCEEEEE
Q 001178 598 TTRNRILAA 606 (1131)
Q Consensus 598 ~~~~~l~~~ 606 (1131)
|||..+++.
T Consensus 321 pDG~lyv~~ 329 (354)
T 3a9g_A 321 DDGGILIST 329 (354)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 888655554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.002 Score=77.63 Aligned_cols=210 Identities=10% Similarity=-0.019 Sum_probs=122.4
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCeEEEEEecCC---CccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 410 ISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGS---NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 410 ~~V~~~~~spdg~~las~-~~d~~i~vwd~~~~---~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
..+..++|++++..|..+ ...+.|..+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.+.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~ 482 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 482 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBS
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEec
Confidence 346689999977766655 34578999998751 11111 11112234567888865554 4556566788999997
Q ss_pred CCceeEEecC-CccCeEEEeecccCCccEEEEEecC-CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 486 SGRKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 486 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
.+..+..+.. .......+++.+.. +.++++-... +.|...+++.................|+++|++..|+.+-.
T Consensus 483 dg~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~-- 559 (699)
T 1n7d_A 483 KGVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 559 (699)
T ss_dssp SSCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET--
T ss_pred CCCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec--
Confidence 7766555432 22445677775532 2333333222 67877777654333332233345678999998877777643
Q ss_pred CCCceEEEEeCCCCeeeEEEeccc--CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
..+.|..+++... ..+.+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 -~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 -KLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp -TTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred -CCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 3678999998643 333332211 112233555433 3444555678899999888887766643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0074 Score=63.42 Aligned_cols=170 Identities=11% Similarity=0.133 Sum_probs=110.3
Q ss_pred EeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE-eecc----cc--cCeeEEEE---ccCCCEEEEEe---
Q 001178 870 FMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT-KLKG----HQ--KHITGLAF---STNLNILVSSG--- 936 (1131)
Q Consensus 870 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~-~~~~----h~--~~V~~l~~---s~dg~~l~s~~--- 936 (1131)
+........+++|.+.++.++++.-..++|..|+...+.... .+.+ .. ..+.+|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 344455567889988566666666689999999987554332 2332 11 13578999 68887777544
Q ss_pred ----------CCCcEEEEEcC---CCceeeeeeeecCC-------CCCCCCceEEEEcCCCcEEEEEe-C-CeEEEEeCC
Q 001178 937 ----------SDAQLIFWNTD---TWEKRKSIAIQLPA-------GKLPVGETRVQFHSDQVRLLVNH-E-TQLAIYDGS 994 (1131)
Q Consensus 937 ----------~Dg~v~lwd~~---~~~~~~~~~~~~~~-------~~~~~~v~~v~~s~d~~~l~~~~-d-~~i~vwd~~ 994 (1131)
.+..|..+|+. +++......+.... +........++..++|+..++++ . +.|...+..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 66654433321110 10113477899999999887654 5 666666665
Q ss_pred CcccceeeecC---CCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 995 KMECIRQWVPQ---DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~---~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
.. .+..+... .......+.|++.|||+.|++...+|.+..+|+.+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 43 33322211 11123467999999999999888899999999884
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.063 Score=58.58 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCE
Q 001178 347 GSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNF 423 (1131)
Q Consensus 347 ~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~ 423 (1131)
-...+.++|.|||+ ++++ ..+|.|.+++ +++... +.++. +..........|+|+|| +..
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~-----~~~~~---------v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST-----YAELS---------VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE-----EEECC---------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE-----eecce---------EeecCCCCceeEEECCCCCCCCE
Confidence 34678999999997 5554 4569999998 443211 00000 11223456889999998 554
Q ss_pred EEEEeC-C-----CeEEEEEecCCCc--cceee-eee---cCcCCeeEEEEecCCCceEEEEE
Q 001178 424 IGVAFT-K-----HLIHLYTYQGSND--LCQSL-EID---AHVGGVNDLAFSYPNKQLCIVTC 474 (1131)
Q Consensus 424 las~~~-d-----~~i~vwd~~~~~~--~~~~~-~~~---~h~~~V~~l~~s~d~~~~~l~s~ 474 (1131)
|.++.. + +.|..|+...+.. .+... .+. +.......++|.|||. ++++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 444432 2 5788888875421 11111 122 1112346899999997 55554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.039 Score=59.06 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=121.5
Q ss_pred CEEEEEe---CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecceeE--Eeeccc
Q 001178 846 SYVMSAG---GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVDEVK--TKLKGH 916 (1131)
Q Consensus 846 ~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~~~~--~~~~~h 916 (1131)
.+++.|+ ...+.+||..+.+-...-..+.......+..- ++.+++.|+.+ ..+.+||..+.+-. ..+...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 3444554 25699999988654322111122222222223 67788888765 56888998876432 222222
Q ss_pred ccCeeEEEEccCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe------
Q 001178 917 QKHITGLAFSTNLNILVSSGSD------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH------ 984 (1131)
Q Consensus 917 ~~~V~~l~~s~dg~~l~s~~~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~------ 984 (1131)
...-.++. -+++.++.||.+ ..+.+||+.+.+-..... .+.. ..-..++. -++++++.|.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQ---RCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSC---CBSCEEEE-ETTEEEEECCEESCTT
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCC---cceeEEEE-ECCEEEEECCCCCCCC
Confidence 22222222 267778888765 458899988865332211 1111 11122222 2555555542
Q ss_pred ----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCccccC
Q 001178 985 ----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQ 1055 (1131)
Q Consensus 985 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~ 1055 (1131)
-..+.+||+.+.+-...-.... ....-..+. -++++++.|+.+ ..+.+||..+.+-. .+.. .+.
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~---~p~ 236 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSP---MPW 236 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEE-ECCC---CSC
T ss_pred cccccceEEEeCCCCCeEEECCCccc-hhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCC---CCC
Confidence 3458899998764332211111 011112222 277788887753 46889999876532 2221 111
Q ss_pred CCCCCCCccccEEEEEcCCCCCeEEEEecC-----CcEEEEecCCCccccccccCCC
Q 001178 1056 ASPNSSQTVFPLVVTSHPQEPNQLAVGLTD-----GSVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1056 ~~~~~~~~v~~~~v~~~p~~~~~l~s~~~D-----g~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
.. .....+.. ++.+++.||.+ ..+.+||+.+.+ |...++..
T Consensus 237 ~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~ 282 (306)
T 3ii7_A 237 KG------VTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVANSKVR 282 (306)
T ss_dssp CB------SCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEEEEEEE
T ss_pred Cc------cceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEeCCCcc
Confidence 10 01111222 56788888865 457777776655 88765443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.18 Score=54.88 Aligned_cols=242 Identities=11% Similarity=0.058 Sum_probs=125.0
Q ss_pred CeeEEEecCCCC-EEEEEeCCeEEEEECCCceeEEEEe-------CCCCCeeEEEEeCC---CCcEEEEEeC-------C
Q 001178 835 VVPCVALSKNDS-YVMSAGGGKVSLFNMMNFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGME-------D 896 (1131)
Q Consensus 835 ~i~~l~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 896 (1131)
....|+|.|||+ ++++-..|.|++++.. +.....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 6666558999999854 33211111 12345689999994 3555554333 2
Q ss_pred CcEEEEEeecc-------eeE-Eeec-----ccccCeeEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCc
Q 001178 897 STIQIYNVRVD-------EVK-TKLK-----GHQKHITGLAFSTNLNILVSSGSD-------------AQLIFWNTDTWE 950 (1131)
Q Consensus 897 g~I~iwd~~~~-------~~~-~~~~-----~h~~~V~~l~~s~dg~~l~s~~~D-------------g~v~lwd~~~~~ 950 (1131)
..|..|++..+ +.+ ..+. .|. -..|+|.|||.++++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666432 111 1121 122 3579999999776665442 356666655310
Q ss_pred ee----------eeeeeecCCCCCCCCceEEEEcC-CCcEEEEEe--CCeEEEEeCCCcccc------------------
Q 001178 951 KR----------KSIAIQLPAGKLPVGETRVQFHS-DQVRLLVNH--ETQLAIYDGSKMECI------------------ 999 (1131)
Q Consensus 951 ~~----------~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~--d~~i~vwd~~~~~~~------------------ 999 (1131)
.. ...... .+. .....++|+| +|.+.++-. ++.=.|.-+..+...
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCCCcCCCCCCccEEE--EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 00 000000 011 3467899999 565555422 222233222221110
Q ss_pred ------eeeecC---CCCCCCeEEEEEcc-------CCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCc
Q 001178 1000 ------RQWVPQ---DVLSSPISSAAYSC-------NSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063 (1131)
Q Consensus 1000 ------~~~~~~---~~~~~~v~~i~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1131)
..+... ..+......++|.. +|+++++....+.|...+++.++......... ...
T Consensus 252 ~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~ 322 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT---------DRG 322 (353)
T ss_dssp CCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG---------GGC
T ss_pred ccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc---------CCC
Confidence 000000 01124677888864 56777766677888888887654332221100 011
Q ss_pred cccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1064 VFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1064 v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
-.+..+++.| ++.++++.. +..=+||++.
T Consensus 323 ~rp~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp CCEEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred CceeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 2456788888 566655433 2233566653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.033 Score=59.46 Aligned_cols=235 Identities=14% Similarity=0.117 Sum_probs=121.4
Q ss_pred CCCEEEEEe-C------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecce---
Q 001178 844 NDSYVMSAG-G------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE--- 908 (1131)
Q Consensus 844 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~--- 908 (1131)
++.+++.|+ . ..+.+||..+.+-...-..+.......+... ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 445555554 1 3588999887653332111122222222223 67788888765 368899987654
Q ss_pred --eEEeecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 --VKTKLKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 --~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
.+..+......-.++.+ +++.++.||.++ .+.+||+.+.+-..... .+.. ..-..++. -++++++
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD--MQTA---REGAGLVV-ASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--CSSC---CBSCEEEE-ETTEEEE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCC--CCCC---cccceEEE-ECCEEEE
Confidence 23222222222222222 677777777543 58889988765433222 2211 11112222 2566655
Q ss_pred EEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCC
Q 001178 982 VNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 982 ~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~ 1050 (1131)
.|. ...+.+||+.+.+-...-.... ....-..+. -++++++.|+.+ ..+.+||..+.+-.. +..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT-VTS- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-ECC-
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE-CCC-
Confidence 542 2468899988765433211111 011122222 367888888764 468999998776432 221
Q ss_pred ccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccC
Q 001178 1051 AYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1051 ~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p 1105 (1131)
.+... .....+.. ++.+++.||.++ .+.+||+.+.+ |...++
T Consensus 240 --~p~~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~ 286 (301)
T 2vpj_A 240 --MTTPR------CYVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEVVTS 286 (301)
T ss_dssp --CSSCC------BSCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEEEEE
T ss_pred --CCCcc------cceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEEcCC
Confidence 11110 01111222 557888888763 46677776654 887643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.022 Score=61.54 Aligned_cols=151 Identities=10% Similarity=0.111 Sum_probs=104.6
Q ss_pred eEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCC----CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee---
Q 001178 837 PCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--- 909 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--- 909 (1131)
+......+|..++++.++.||.-++......+.+... ...|..+..+| +|.+||..+ +..|.|-.+..+..
T Consensus 24 R~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 24 RYIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred cEEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCc
Confidence 3445678899999999999999998865566666654 23689999999 899999775 45888888873210
Q ss_pred ---------EEeecc------cccCeeEEEEccC---CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-----CCCCC
Q 001178 910 ---------KTKLKG------HQKHITGLAFSTN---LNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA-----GKLPV 966 (1131)
Q Consensus 910 ---------~~~~~~------h~~~V~~l~~s~d---g~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~ 966 (1131)
...+.- ...+|..+.|+|- +..|++-..|++|++||+........ .+.... .....
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 111211 2567999999995 56899999999999999997432222 111111 11126
Q ss_pred CceEEEEcCCCcEEEEE---eCCeEEE
Q 001178 967 GETRVQFHSDQVRLLVN---HETQLAI 990 (1131)
Q Consensus 967 ~v~~v~~s~d~~~l~~~---~d~~i~v 990 (1131)
.+.+++|.+++-.|.+. .+|.|+-
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 78899999988766663 3466653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.17 Score=54.49 Aligned_cols=202 Identities=10% Similarity=0.148 Sum_probs=120.5
Q ss_pred CCeeEEEecCCCCEEEEE-------------eCCeEEEEECCC--ceeE-EEEeC-----CCCCeeEEEEeCC-CC--cE
Q 001178 834 DVVPCVALSKNDSYVMSA-------------GGGKVSLFNMMN--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NI 889 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~i~~l~~s~~-~~--~~ 889 (1131)
.....+++.++|..++++ .+|.|.++|..+ .+.. ..+.+ .......+.+.++ ++ ++
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 345678888998877776 378899999873 2221 12222 1246777887662 23 34
Q ss_pred EEEEeC--CCcEEEEEeecc----eeEEeeccc-ccCeeEEEEccCCCEEEEEeC-----------------CCcEEEEE
Q 001178 890 IAIGME--DSTIQIYNVRVD----EVKTKLKGH-QKHITGLAFSTNLNILVSSGS-----------------DAQLIFWN 945 (1131)
Q Consensus 890 la~g~~--dg~I~iwd~~~~----~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~~-----------------Dg~v~lwd 945 (1131)
+++-.. +.+|.+|+++.+ ..+..+.+. -...+.+.+.++|.++++... .|.|..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 567889888753 223334332 234788999999998887651 23444444
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCC-ccc--ceeeecCCCCCCCeEEEEEcc-
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSK-MEC--IRQWVPQDVLSSPISSAAYSC- 1019 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~-~~~--~~~~~~~~~~~~~v~~i~~s~- 1019 (1131)
. ++.. ...-.. .....++|+||++.|.+++ .+.|+.|++.. +.. .+.+ .. ......+++.+
T Consensus 210 ~--~~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e 276 (355)
T 3sre_A 210 P--NDVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPV 276 (355)
T ss_dssp T--TCCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTT
T ss_pred C--CeEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCC
Confidence 3 3211 111111 3457899999999888864 67899999863 322 1222 11 45678899999
Q ss_pred CCCEEEEEecC-CcEEEEECC--CCceeeEec
Q 001178 1020 NSQLIYATFTD-GSIGVFDAD--SLRLRCRIA 1048 (1131)
Q Consensus 1020 dg~~l~s~~~d-g~i~vwd~~--~~~~~~~~~ 1048 (1131)
+|++.+++..+ +.|..|+.+ .+..+.++.
T Consensus 277 ~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 277 TGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp TCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 59988766544 344444433 244444444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.11 Score=55.35 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=119.7
Q ss_pred CCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecceeE--Ee
Q 001178 845 DSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDEVK--TK 912 (1131)
Q Consensus 845 g~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~~~--~~ 912 (1131)
+.+++.|+ + ..+.+||+.+.+-...-..+.......+..- ++.+++.|+.++ .+.+||..+.+-. ..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 34455554 2 4588999887653332111122211112222 677888887653 5888888766432 22
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe---
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDA-----QLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--- 984 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--- 984 (1131)
+......-.++.+ +++.++.||.++ .+.+||+.+.+-...... +.. .....++. -++++++.|.
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~~-~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTR---RSSVGVGV-VGGLLYAVGGYDV 166 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSC---CBSCEEEE-ETTEEEEECCEET
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCc---ccCceEEE-ECCEEEEEeCCCC
Confidence 2221122222222 677778887653 577888887553322211 111 11122222 2555555532
Q ss_pred -----CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCcccc
Q 001178 985 -----ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMS 1054 (1131)
Q Consensus 985 -----d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~ 1054 (1131)
-..+.+||+.+.+-...-..... ...-..+ .-++++++.|+.+ ..+.+||..+.+-. .+... +
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~---~ 239 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADM---N 239 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCC---S
T ss_pred CCCccccEEEEEeCCCCcEEECCCCccc-cccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCC---C
Confidence 24588999887643322111110 1112222 2377888888754 46899999876533 22211 1
Q ss_pred CCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCcccccccc
Q 001178 1055 QASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1055 ~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~ 1104 (1131)
... .....+.. ++.+++.||.++ .+.+||+.+.+ |...+
T Consensus 240 ~~r------~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 283 (302)
T 2xn4_A 240 MCR------RNAGVCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVVS 283 (302)
T ss_dssp SCC------BSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECS
T ss_pred Ccc------ccCeEEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEECC
Confidence 110 01111222 567888888764 47888887765 98764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.63 Score=49.85 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=107.8
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEE--EEe----CCCCCeeEEEEeCC---CCcEEEEEe--CCCcEE
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMT--TFM----SPPPASTFLAFHPQ---DNNIIAIGM--EDSTIQ 900 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~--~~~----~~~~~i~~l~~s~~---~~~~la~g~--~dg~I~ 900 (1131)
-...+.|+|.|||+++++-. .|.|++++..+++... .+. ........|+++|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34568999999999888887 7999999876655422 221 22456789999993 355544322 344555
Q ss_pred EEEeecc----------eeE-Eeecc-cccCeeEEEEccCCCEEEEEeC-------------CCcEEEEEcCCCceee--
Q 001178 901 IYNVRVD----------EVK-TKLKG-HQKHITGLAFSTNLNILVSSGS-------------DAQLIFWNTDTWEKRK-- 953 (1131)
Q Consensus 901 iwd~~~~----------~~~-~~~~~-h~~~V~~l~~s~dg~~l~s~~~-------------Dg~v~lwd~~~~~~~~-- 953 (1131)
-|.+..+ +.+ ..+.. ....-..|+|.|||.++++.+. -|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 5655441 111 12221 1112467999999998888653 2444444443310000
Q ss_pred --eeeeecCCCCCCCCceEEEEcCCCcEEEEE--eCCeEEEEeCCCcccc------------------eeeecCCCCCCC
Q 001178 954 --SIAIQLPAGKLPVGETRVQFHSDQVRLLVN--HETQLAIYDGSKMECI------------------RQWVPQDVLSSP 1011 (1131)
Q Consensus 954 --~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~--~d~~i~vwd~~~~~~~------------------~~~~~~~~~~~~ 1011 (1131)
...+. ..++ .....++|+|+|.+.++- .++.=.|.-+..+... ..+..+ ...
T Consensus 191 f~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~a 264 (347)
T 3das_A 191 FPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EAS 264 (347)
T ss_dssp STTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TCC
T ss_pred CCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CCC
Confidence 00000 0111 345689999998876663 2332333333322211 111111 135
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEECCCC
Q 001178 1012 ISSAAYSCNSQLIYATFTDGSIGVFDADSL 1041 (1131)
Q Consensus 1012 v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~ 1041 (1131)
...++|. +|.+++..-..+.|....++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 6677776 4555555555556666665543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.51 Score=51.31 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=59.3
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC---CCEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD---GNFI 424 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~l 424 (1131)
...+.|+|.|||+++++ +...|.|++++.. ++... .+ -++ . .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~-------~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGV-------P-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSC-------C-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCC-------c-ccccCCCCCceeEEECCCCCCCCEE
Confidence 45789999999974444 4567999999854 32211 00 000 0 011223456789999996 4444
Q ss_pred EEE-eC-------CCeEEEEEecCCC-ccceeee----ee---cCcCCeeEEEEecCCCceEEEEEc
Q 001178 425 GVA-FT-------KHLIHLYTYQGSN-DLCQSLE----ID---AHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 425 as~-~~-------d~~i~vwd~~~~~-~~~~~~~----~~---~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
..+ +. ...|..|++..+. .+..... +. .....-..++|.|||. ++++.+
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~G 148 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY--LFIALG 148 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE--EEEEEC
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc--EEEEEC
Confidence 333 22 2356667765431 1111111 11 1111246799999996 444443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.2 Score=53.64 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=117.0
Q ss_pred eCCeEEEEECCCceeEE-EEeCCCCCeeEEEEeCCCCcEEEEEeC-----C------CcEEEEEeecceeEE--eecccc
Q 001178 852 GGGKVSLFNMMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGME-----D------STIQIYNVRVDEVKT--KLKGHQ 917 (1131)
Q Consensus 852 ~dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~-----d------g~I~iwd~~~~~~~~--~~~~h~ 917 (1131)
+...+.+||..+++-.. .+..+..+....+... ++.+++.|+. . ..+.+||..+.+-.. .+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34679999998876433 2222223444444445 7788888874 1 127778887664322 122111
Q ss_pred cCeeEEEEccCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeC----
Q 001178 918 KHITGLAFSTNLNILVSSGSD--------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE---- 985 (1131)
Q Consensus 918 ~~V~~l~~s~dg~~l~s~~~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d---- 985 (1131)
..-..+.+ +++.++.||.+ ..+.+||+.+.+-..... .+.. ..-.+++. -++++++.|..
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV---VYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc---ccceeEEE-ECCEEEEEeCCCCCC
Confidence 11122222 56777777742 358899998755322221 1111 11122222 45555555431
Q ss_pred ---CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCceeeEecCCccccCCC
Q 001178 986 ---TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLRLRCRIAPSAYMSQAS 1057 (1131)
Q Consensus 986 ---~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1057 (1131)
..+.+||..+.+-...-.... ....-.++ .-++++++.|+.++ .+.+||..+.+-.. +.. .+...
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r 234 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP-FEA---FPQER 234 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE-ECC---CSSCC
T ss_pred cccceEEEEeCCCCeEEECCCCCC-chhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEE-CCC---CCCcc
Confidence 468999988754322211110 01112222 23778888888654 58889988775332 221 11110
Q ss_pred CCCCCccccEEEEEcCCCCCeEEEEecCC--------------cEEEEecCCCccccccccCCC
Q 001178 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1058 ~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg--------------~v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
..+ ..+.. ++.+++.||.++ .+.+||+.+. +|....|..
T Consensus 235 ~~~------~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~ 287 (315)
T 4asc_A 235 SSL------SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGVLREI 287 (315)
T ss_dssp BSC------EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEEESCS
T ss_pred cce------eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhhccCC
Confidence 011 11222 557888888743 2556666655 498774443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.089 Score=56.00 Aligned_cols=188 Identities=11% Similarity=0.033 Sum_probs=98.2
Q ss_pred CCCCEEEEEe-C-----CeEEEEECCCce---eEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCC-----cEEEEEeecce
Q 001178 843 KNDSYVMSAG-G-----GKVSLFNMMNFK---VMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS-----TIQIYNVRVDE 908 (1131)
Q Consensus 843 ~dg~~la~~~-d-----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-----~I~iwd~~~~~ 908 (1131)
.++++++.|+ + ..+.+||..+.+ -...-..+.......+..- ++++++.|+.++ .+.+||..+.+
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 3566666665 3 358999988765 2222111122222222222 677888887543 58888887654
Q ss_pred e--EEeecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 V--KTKLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 ~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
- +..+......-.++. .+++.++.||.+ ..+.+||+.+.+-..... .+.. .....++. -++++++
T Consensus 140 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~---r~~~~~~~-~~~~i~v 211 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP--MATK---RSGAGVAL-LNDHIYV 211 (301)
T ss_dssp EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC--CSSC---CBSCEEEE-ETTEEEE
T ss_pred EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC--CCcc---cccceEEE-ECCEEEE
Confidence 2 222222111122222 267778887765 358899988765432211 1111 11122222 2555555
Q ss_pred EEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCc
Q 001178 982 VNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLR 1042 (1131)
Q Consensus 982 ~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1042 (1131)
.|. ...+.+||+.+.+-...-..... ......+ .-++++++.|+.+ ..+.+||.++.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP-RCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCc-ccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 543 24689999987654332111110 1122222 2377888888765 457888887765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.13 Score=54.91 Aligned_cols=238 Identities=15% Similarity=0.129 Sum_probs=121.7
Q ss_pred cCCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeC----C-----CcEEEEEeecc
Q 001178 842 SKNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME----D-----STIQIYNVRVD 907 (1131)
Q Consensus 842 s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~----d-----g~I~iwd~~~~ 907 (1131)
.-++.+++.|+ + ..+.+||..+.+-...-..+.......+..- ++.+++.|+. + ..+.+||..+.
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 34566666665 2 4589999887654332111112211112222 6677877776 2 46888888766
Q ss_pred eeEE--eecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 908 EVKT--KLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 908 ~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
+-.. .+......-.++.+ +++.++.||.+ ..+.+||+.+.+-...... +.. ..-..++.. +++++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~---r~~~~~~~~-~~~iy 172 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTR---RIGVGVAVL-NRLLY 172 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSC---CBSCEEEEE-TTEEE
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccc---ccceEEEEE-CCEEE
Confidence 4322 22211122222222 67777777654 3588899887553322211 111 111122222 55555
Q ss_pred EEEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecC
Q 001178 981 LVNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 981 ~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~ 1049 (1131)
+.|. ...+.+||+.+.+-...-.... ....-..+.+ ++++++.|+.+ ..+.+||+.+.+-. .+..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~-~~~~ 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAP 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE-ECCC
Confidence 5542 2468899988754332211111 0112222222 77888888754 56999999876533 2221
Q ss_pred CccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCC-----cEEEEecCCCccccccccCC
Q 001178 1050 SAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDG-----SVKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1050 ~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg-----~v~iW~~~~~~~~w~~~~p~ 1106 (1131)
.+... .-.. .+.. ++.+++.||.++ .+.+||+.+.+ |...++.
T Consensus 249 ---~p~~r-----~~~~-~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~ 296 (308)
T 1zgk_A 249 ---MKHRR-----SALG-ITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRM 296 (308)
T ss_dssp ---CSSCC-----BSCE-EEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEEC
T ss_pred ---CCCCc-----cceE-EEEE---CCEEEEEcCcCCCcccceEEEEcCCCCE--EeecCCC
Confidence 11110 0011 1221 567888888653 46777776654 9876544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.93 Score=51.03 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCeeEEEecCCCCEEEEEeC-CeEEEEECCCceeE--EEEeC------CCCCeeEEEEeCC---CCcEEEEEeC------
Q 001178 834 DVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVM--TTFMS------PPPASTFLAFHPQ---DNNIIAIGME------ 895 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~d-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---~~~~la~g~~------ 895 (1131)
...+.|+|.|||+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999998887765 47988887655432 22221 2345679999994 4555444432
Q ss_pred ------CCcEEEEEeecc-------eeEE-eecc-cccCeeEEEEccCCCEEEEEeC
Q 001178 896 ------DSTIQIYNVRVD-------EVKT-KLKG-HQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 896 ------dg~I~iwd~~~~-------~~~~-~~~~-h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
...|.-|+...+ +.+. .+.. .......|+|.|||.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555655432 1121 1221 1123688999999998887654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.24 Score=54.18 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=116.0
Q ss_pred CCCEEEEEe--CCeEEEEECCC--c--eeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeC-C---------CcEEEEEeec
Q 001178 844 NDSYVMSAG--GGKVSLFNMMN--F--KVMTTFMSPPPAS-TFLAFHPQDNNIIAIGME-D---------STIQIYNVRV 906 (1131)
Q Consensus 844 dg~~la~~~--dg~i~vwd~~~--~--~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~-d---------g~I~iwd~~~ 906 (1131)
++++++.|+ ...+.+||..+ . ..+..+.. ..+. .+++. - ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAF-I-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEE-E-TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEE-E-CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 677777776 46799999864 2 22222221 1221 22222 2 6778887776 2 4688899877
Q ss_pred ceeEE--eecccccCeeEEEEccCCCEEEEEeCC---------------------------------------CcEEEEE
Q 001178 907 DEVKT--KLKGHQKHITGLAFSTNLNILVSSGSD---------------------------------------AQLIFWN 945 (1131)
Q Consensus 907 ~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D---------------------------------------g~v~lwd 945 (1131)
.+-.. .+. ........+...++++++.||.+ ..+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 64322 222 01111121222577888888865 4688999
Q ss_pred cCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-------CCeEEEEeC--CCccc--ceeeecCCCCCCCeEE
Q 001178 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-------ETQLAIYDG--SKMEC--IRQWVPQDVLSSPISS 1014 (1131)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d~~i~vwd~--~~~~~--~~~~~~~~~~~~~v~~ 1014 (1131)
+.+.+-..... .+... .....++.. ++++++.|. ...+.+||+ .+.+- +..+... ......
T Consensus 175 ~~~~~W~~~~~--~p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~ 246 (357)
T 2uvk_A 175 PSTQQWSYAGE--SPWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGG 246 (357)
T ss_dssp TTTTEEEEEEE--CSSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSC
T ss_pred CCCCcEEECCC--CCCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccc
Confidence 88765433222 22111 111223332 455555532 245777876 33322 1111111 111112
Q ss_pred EEEccCCCEEEEEecC----------------------CcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEc
Q 001178 1015 AAYSCNSQLIYATFTD----------------------GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1015 i~~s~dg~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~ 1072 (1131)
.+...++++++.|+.+ ..+.+||+.+.+-.. +.. .+... ....++..
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r------~~~~~~~~- 315 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK-SGE---LSQGR------AYGVSLPW- 315 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE-EEE---CSSCC------BSSEEEEE-
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee-CCC---CCCCc------ccceeEEe-
Confidence 2233477888888732 257889988765332 211 11110 01112222
Q ss_pred CCCCCeEEEEecCCc----EEEEecCCCccccccccCCC
Q 001178 1073 PQEPNQLAVGLTDGS----VKVIEPSETERKWGVAVPVD 1107 (1131)
Q Consensus 1073 p~~~~~l~s~~~Dg~----v~iW~~~~~~~~w~~~~p~~ 1107 (1131)
++.+++.||.++. =-+|-+.-...+|....|..
T Consensus 316 --~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 316 --NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp --TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred --CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 5678999997642 24665666667799887765
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.2 Score=53.45 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=100.4
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC------CcEEEEEeecceeEE
Q 001178 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED------STIQIYNVRVDEVKT 911 (1131)
Q Consensus 843 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------g~I~iwd~~~~~~~~ 911 (1131)
-++++++.|+ + ..+.+||..+.+-...-..+.......+..- ++++++.|+.+ ..+.+||..+.+-..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 3666666665 3 5689999988654333222222222222223 67788888765 458899988764322
Q ss_pred --eecccccCeeEEEEccCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEE
Q 001178 912 --KLKGHQKHITGLAFSTNLNILVSSGS---------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRL 980 (1131)
Q Consensus 912 --~~~~h~~~V~~l~~s~dg~~l~s~~~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l 980 (1131)
.+......-.++. -++++++.|+. -..+.+||+.+.+-..... .+.. ..-..++.. +++++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~~~~-~~~i~ 204 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP--MIEA---RKNHGLVFV-KDKIF 204 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC--CSSC---CBSCEEEEE-TTEEE
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC--ccch---hhcceEEEE-CCEEE
Confidence 2221111112222 36677777764 2448899998865332221 1111 111222222 55555
Q ss_pred EEEe------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCce
Q 001178 981 LVNH------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1131)
Q Consensus 981 ~~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1043 (1131)
+.|. -..+.+||+.+.+-...-.... ......++.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 5542 2468999998754322211110 0122223333 78888888854 5688999887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.33 Score=60.74 Aligned_cols=260 Identities=8% Similarity=0.085 Sum_probs=145.9
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..+|.|.|+.++..+..... ...+.-++|..+.++.- ...++.|||+.+...+....... +|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788888887654422111 22234578877755554 47899999999988887766544 45555665443
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|.-|++.......+.+..|..-
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L------------------------------------------------ 148 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhc------------------------------------------------
Confidence 344333 4588999986543444444332211
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
...+|.....+++.++++..|- .|.+.+|..+.
T Consensus 149 ----------------------------------------~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 149 ----------------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred ----------------------------------------ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 1234445555666666665442 35666666554
Q ss_pred CCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEec---CCCCEEEEEe----CCeEEEEECCCc---eeE-
Q 001178 799 TEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALS---KNDSYVMSAG----GGKVSLFNMMNF---KVM- 867 (1131)
Q Consensus 799 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s---~dg~~la~~~----dg~i~vwd~~~~---~~~- 867 (1131)
....+-. +|......+.+. +....++.+. +++++|.++... ...
T Consensus 189 ~~sQ~ie-------------------------gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 189 KVSQPIE-------------------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred ccchhhh-------------------------HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 3221110 111111111110 1112222222 367888887542 110
Q ss_pred -----EEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC
Q 001178 868 -----TTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA 939 (1131)
Q Consensus 868 -----~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg 939 (1131)
..+.. ...-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-...+|...+.+....-++.....|
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G 322 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKG 322 (1630)
T ss_pred ccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCc
Confidence 01111 123356777887 566777889999999999999998877665556666665555444455556777
Q ss_pred cEEEEEcCCC
Q 001178 940 QLIFWNTDTW 949 (1131)
Q Consensus 940 ~v~lwd~~~~ 949 (1131)
.|.--.++..
T Consensus 323 ~vl~v~v~~~ 332 (1630)
T 1xi4_A 323 QVLSVCVEEE 332 (1630)
T ss_pred eEEEEEEccc
Confidence 7766666553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.29 E-value=1.6 Score=46.79 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC----C
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD----G 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g 421 (1131)
.-...+.++|.|||+ ++++--..|.|++++..+++.... . .+ ..+..........|+|+|| +
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v---~--~~--------~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTEL---G--EV--------PGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE---E--EC--------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeee---c--cc--------CceeecCCCCceeeEeccccccCC
Confidence 455789999999997 666655589999998765543210 0 00 0022334567899999995 4
Q ss_pred CEEEEEe--CCCeEEEEEecCCC----cc---ceee-eee-cCcCCeeEEEEecCCCceEEEEEc
Q 001178 422 NFIGVAF--TKHLIHLYTYQGSN----DL---CQSL-EID-AHVGGVNDLAFSYPNKQLCIVTCG 475 (1131)
Q Consensus 422 ~~las~~--~d~~i~vwd~~~~~----~~---~~~~-~~~-~h~~~V~~l~~s~d~~~~~l~s~s 475 (1131)
.+.++-+ .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. ++++.+
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 4444322 34566667665521 11 1111 121 1122356799999997 555543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.44 Score=50.51 Aligned_cols=230 Identities=10% Similarity=0.032 Sum_probs=110.7
Q ss_pred CCEEEEEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC-----CcEEEEeCCCceeE
Q 001178 421 GNFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD-----KLIRVWDLSGRKLF 491 (1131)
Q Consensus 421 g~~las~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d-----~~i~iwd~~~~~~~ 491 (1131)
+..++.|+.+ ..+..||..+.+- .....+......- +++. -+++ +++.|+.+ ..+.+||.....-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 3455555543 3578888877542 1111111111111 1222 2555 66666644 35788883333322
Q ss_pred EecC---CccCeEEEeecccCCccEEEEEecCC-----eEEEEeCCCCceeEEecC--CCceEEEEEEccCCCEEEEEee
Q 001178 492 QFEG---HEAPVYSVCPHQKENIHFIFSTAVDG-----KIKAWLYDNVGSRVDYDA--PGLWCTTMLYSADGSRLFSCGT 561 (1131)
Q Consensus 492 ~~~~---h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~ 561 (1131)
.+.. .......+.+ ++.+++.|+.++ .+.+||..+..-...-.. .......+. -+++.++.++.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 164 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGY 164 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCC
Confidence 2221 1111222222 346677776553 467778766543222111 111111222 25666677665
Q ss_pred cCCC---CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-----CcEEEEEcCCCeEEEEEeccCCCC
Q 001178 562 SKEG---DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDNVNMLTSTEAEGGLP 633 (1131)
Q Consensus 562 ~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 633 (1131)
+... ...+.+||..+.+....-.......-.+++.. ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 3321 34688999988765443211111111222222 55666677654 4689999988765443322211
Q ss_pred CcceEEEcCCCCEEEEEECCC-----cEEEEecCCC
Q 001178 634 SLPRLRFNKEGNLLVVTTADQ-----GIKILANADG 664 (1131)
Q Consensus 634 ~i~~v~~sp~~~~l~~~~~dg-----~i~iw~~~~~ 664 (1131)
.....+..-++.+++.|+.++ .+.+||..+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 112222223567777777553 4778887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.077 Score=57.39 Aligned_cols=126 Identities=18% Similarity=0.172 Sum_probs=81.0
Q ss_pred cEEEEEEecCCCcEEEEEcCCCeEEEEECCCCccccc-----c--cceeecccccccceeceeccCCCCCEEEEEEcCC-
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS-----K--PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD- 420 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd- 420 (1131)
.|..+..||+|+. ||.-+ +.+|.|-.+..+..... . ..+.|.+.. .......+|..+.|+|-
T Consensus 67 ~i~qlvlSpsG~l-LAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDL-LCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSE-EEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCE-EEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 6888999999984 66554 56899999874432221 1 112222211 01124678999999994
Q ss_pred --CCEEEEEeCCCeEEEEEecCCCccce-------eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 421 --GNFIGVAFTKHLIHLYTYQGSNDLCQ-------SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 421 --g~~las~~~d~~i~vwd~~~~~~~~~-------~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+..|++-..|++|++||+........ .+.+..+...|.+++|..++-.+++++....|.|+-..
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 56899999999999999986332111 01122233578899999987766666666777765544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=2.2 Score=45.85 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=109.2
Q ss_pred EEEEEEcCCCCEEEEE------------eCCCeEEEEEecCCCccceeeeeec-----CcCCeeEEEEec--CCCceEEE
Q 001178 412 VSRVAWSPDGNFIGVA------------FTKHLIHLYTYQGSNDLCQSLEIDA-----HVGGVNDLAFSY--PNKQLCIV 472 (1131)
Q Consensus 412 V~~~~~spdg~~las~------------~~d~~i~vwd~~~~~~~~~~~~~~~-----h~~~V~~l~~s~--d~~~~~l~ 472 (1131)
.-.++..|+|..++++ ..+|.|.++|.++.........+.+ .......+.+.+ ++...+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456678887666555 2689999999974321111223333 234567788766 45432344
Q ss_pred EEcC--CCcEEEEe--CCCcee---EEecCC-ccCeEEEeecccCCccEEEEEe-----------------cCCeEEEEe
Q 001178 473 TCGD--DKLIRVWD--LSGRKL---FQFEGH-EAPVYSVCPHQKENIHFIFSTA-----------------VDGKIKAWL 527 (1131)
Q Consensus 473 s~s~--d~~i~iwd--~~~~~~---~~~~~h-~~~v~~~~~~~~~~~~~l~s~s-----------------~dg~i~~wd 527 (1131)
+-.. +.+|.+|+ ..+... ..+.+. -...+.+++.+ +|.+.++.. ..|.|.-++
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 4333 56888888 333332 233332 23467777753 455555543 124455454
Q ss_pred CCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-Cee--eEEEecccCCceEEEEEeC-CCCEE
Q 001178 528 YDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GAL--KRTYIGFRKKSAGVVQFDT-TRNRI 603 (1131)
Q Consensus 528 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~s~-~~~~l 603 (1131)
. .+.. .+...-...+.++|+||++.|+.+.. ..+.|+.|++.. +.. .+.+. .......+++.+ +|++.
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTTCCEE
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCCCcEE
Confidence 4 2222 22222234689999999999888764 267899999753 432 22332 233566788998 58877
Q ss_pred EEEEcC-CcEEEEEcC
Q 001178 604 LAAGED-NQIKFWDMD 618 (1131)
Q Consensus 604 ~~~~~d-g~i~iwd~~ 618 (1131)
+++..+ +.|..|+..
T Consensus 282 va~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 282 VGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEESCHHHHHSCCTT
T ss_pred EEecCCceEEEEECCC
Confidence 766533 344444433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.057 Score=52.60 Aligned_cols=147 Identities=16% Similarity=0.078 Sum_probs=84.5
Q ss_pred CeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccC--------eeEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001178 876 ASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH--------ITGLAFSTNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 876 ~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
.++.++|+| ++.+.++ .+|.++-.+..+... ..+.+-... -.++.|.++|.+.++ .||.|+-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8888877 677665555433211 111111112 478999999998888 56988877753
Q ss_pred CCceeeee--eeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccc-----eeeecCCCCCCCeEEEEEccC
Q 001178 948 TWEKRKSI--AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECI-----RQWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 948 ~~~~~~~~--~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~i~~s~d 1020 (1131)
+.....-. ...+-.+ --..+..|.|.|+|.+.++. ++.++-....++... ....... .-....-+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCC
Confidence 32111100 0000000 01367899999999999998 888655444432211 1111111 0223445668888
Q ss_pred CCEEEEEecCCcE
Q 001178 1021 SQLIYATFTDGSI 1033 (1131)
Q Consensus 1021 g~~l~s~~~dg~i 1033 (1131)
|.+.++. ++.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8877765 6643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.80 E-value=3.3 Score=46.37 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCcee-------------EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKV-------------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDST 898 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 898 (1131)
.....+.++|||+++++++ +.++.++|+..... ..... -.-.....+|.+ +|....+-.-|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecce
Confidence 3445688999999999998 78899999874211 22222 244578899999 7766666778999
Q ss_pred EEEEEeecc----------eeEEeecccccCeeEEEE------ccCCCEEEEEeC
Q 001178 899 IQIYNVRVD----------EVKTKLKGHQKHITGLAF------STNLNILVSSGS 937 (1131)
Q Consensus 899 I~iwd~~~~----------~~~~~~~~h~~~V~~l~~------s~dg~~l~s~~~ 937 (1131)
|.-|++... ..+..+.-|-.+ -.+.- .+||++|++...
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEES
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecc
Confidence 999999764 455555555332 22222 578999998753
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.57 Score=51.08 Aligned_cols=60 Identities=5% Similarity=-0.113 Sum_probs=30.8
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC------cEEEEECCCCceeeEecC
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG------SIGVFDADSLRLRCRIAP 1049 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg------~i~vwd~~~~~~~~~~~~ 1049 (1131)
.+.+||+.+.+-...-..... ... ..++..++++++.|+.++ .|.++++++++.+.....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 477899886543322111110 111 222345788889899553 466678888877655543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.08 Score=56.47 Aligned_cols=202 Identities=9% Similarity=0.045 Sum_probs=108.9
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeeccc-ccCeeEEEE---ccCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGH-QKHITGLAF---STNLNILVSS-GSDAQLIFWNTDTWEKRKSIAIQLPAG 962 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~---s~dg~~l~s~-~~Dg~v~lwd~~~~~~~~~~~~~~~~~ 962 (1131)
.++++++.||.|+-+|..+|+.+-.++.. ..++....- ..++..++.. +.||.|..++..+|........ +..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~--~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI--RQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH--HHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc--ccc
Confidence 46788999999999999999988777654 122222110 0123344443 6899999999888754332221 111
Q ss_pred CCCCCceE---EEE------cCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCC-----eEEEEEc-----cCCCE
Q 001178 963 KLPVGETR---VQF------HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP-----ISSAAYS-----CNSQL 1023 (1131)
Q Consensus 963 ~~~~~v~~---v~~------s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~i~~s-----~dg~~ 1023 (1131)
....+... ... +.++..++.+.++.+...|+.+|+.+..+..... ... ..|.... ..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB-CC--------------------CCE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCCe
Confidence 11111111 001 2455555556799999999999999988765421 110 1111111 12457
Q ss_pred EEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCcccc
Q 001178 1024 IYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1100 (1131)
Q Consensus 1024 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~~w 1100 (1131)
|+.+..+..+.+.+ .+|+ +.......+.+.. ....+.. .... ..++.+ +.++.||.|.-.|...+..+|
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~---~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNV---LDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCT---TTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccc---ccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777777 4564 3322211111100 0000000 0000 013444 558889999999999999999
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.046 Score=53.25 Aligned_cols=149 Identities=11% Similarity=-0.073 Sum_probs=83.7
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCcee------EEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKV------MTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD 907 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~ 907 (1131)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+- ..-..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5669999999998887 888876666544211 11110 0001137889999 8888877 5698887765332
Q ss_pred ee-------EEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee-eeecCCCCCCCCceEEEEcCCCcE
Q 001178 908 EV-------KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI-AIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 908 ~~-------~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
.. ...-.+--..+..|.|.|+|.+.+.. |+.++-+...+.....-. ...............+.|.+++.+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 11 11111122468999999999888777 776543332221100000 000000000123445679999988
Q ss_pred EEEEeCCeEEE
Q 001178 980 LLVNHETQLAI 990 (1131)
Q Consensus 980 l~~~~d~~i~v 990 (1131)
.++. ++.++-
T Consensus 196 ~~v~-~g~~Y~ 205 (236)
T 1tl2_A 196 FGVQ-GGKFYE 205 (236)
T ss_dssp EEEE-TTEEEE
T ss_pred EEEe-CCeEEe
Confidence 8877 664443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.69 E-value=1.2 Score=47.39 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=112.7
Q ss_pred CeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEEEEEeC----CC-------cEEEEEeecceeEE--eecccccC
Q 001178 854 GKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGME----DS-------TIQIYNVRVDEVKT--KLKGHQKH 919 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~I~iwd~~~~~~~~--~~~~h~~~ 919 (1131)
..+..||..+.+-... +.....+....+... ++.+++.|+. ++ .+.+||..+.+-.. .+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588999988765442 222223333334444 7788888883 12 17778877654322 22211111
Q ss_pred eeEEEEccCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe-------C
Q 001178 920 ITGLAFSTNLNILVSSGSD-------AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-------E 985 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~D-------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-------d 985 (1131)
-..+.+ +++.++.||.+ ..+.+||+.+.+-..... .+... .-.+++. .++++++.|. -
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r---~~~~~~~-~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN--LPIKV---YGHNVIS-HNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC--CSSCE---ESCEEEE-ETTEEEEECCEESSSCBC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC--CCCcc---cccEEEE-ECCEEEEEcCCCCCCCcc
Confidence 222222 66777777764 247888888754332211 11111 1112222 4566555542 2
Q ss_pred CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCccccCCCCCC
Q 001178 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNS 1060 (1131)
Q Consensus 986 ~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1131)
..+.+||+.+.+-...-.... ....-.++. -++++++.|+.+ ..+.+||..+.+-.. +.. .+.....+
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r~~~ 247 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV-MTE---FPQERSSI 247 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEE-CCC---CSSCCBSC
T ss_pred ceEEEEcCCCCEEEECCCCCC-CcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEE-CCC---CCCcccce
Confidence 358999998765332211111 011112222 367888888743 357789988765332 221 11110001
Q ss_pred CCccccEEEEEcCCCCCeEEEEecCC--------------cEEEEecCCCcccccccc
Q 001178 1061 SQTVFPLVVTSHPQEPNQLAVGLTDG--------------SVKVIEPSETERKWGVAV 1104 (1131)
Q Consensus 1061 ~~~v~~~~v~~~p~~~~~l~s~~~Dg--------------~v~iW~~~~~~~~w~~~~ 1104 (1131)
. .+.. ++.+++.||.++ .+.+||+.+.+ |....
T Consensus 248 -----~-~~~~---~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~ 294 (318)
T 2woz_A 248 -----S-LVSL---AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAGML 294 (318)
T ss_dssp -----E-EEEE---TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEEEE
T ss_pred -----E-EEEE---CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehhhc
Confidence 1 1221 457888887653 46677776654 88763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.56 Score=50.07 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=97.0
Q ss_pred ecCCCCEEEEEe-----CC-------eEEEEECCCceeEEEEeCCCCCe-eEEEEeCCCCcEEEEEeCC--------CcE
Q 001178 841 LSKNDSYVMSAG-----GG-------KVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED--------STI 899 (1131)
Q Consensus 841 ~s~dg~~la~~~-----dg-------~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d--------g~I 899 (1131)
...+++.++.|+ ++ .+.+||..+.+-...-..+..+. .+++.. ++++++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence 345777776665 11 27788988765422211111111 122222 56777777743 458
Q ss_pred EEEEeecceeE--EeecccccCeeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEE
Q 001178 900 QIYNVRVDEVK--TKLKGHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRV 971 (1131)
Q Consensus 900 ~iwd~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~-D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v 971 (1131)
.+||..+.+-. ..+......-.++ ..+++.++.||. + ..+.+||+.+.+-..... .+.. .....+
T Consensus 120 ~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~ 192 (315)
T 4asc_A 120 MCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP--MQTA---RSLFGA 192 (315)
T ss_dssp EEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEE
T ss_pred EEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC--CCCc---hhceEE
Confidence 89998876422 2222111111222 246677777776 2 368899988755332221 1111 111222
Q ss_pred EEcCCCcEEEEE-eC-----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC--------------C
Q 001178 972 QFHSDQVRLLVN-HE-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD--------------G 1031 (1131)
Q Consensus 972 ~~s~d~~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d--------------g 1031 (1131)
+.. ++++++.| .+ ..+.+||+.+.+-...-..... ......+. -++++++.|+.+ .
T Consensus 193 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~ 268 (315)
T 4asc_A 193 TVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS--LVGTLYAIGGFATLETESGELVPTELN 268 (315)
T ss_dssp EEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred EEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE--ECCEEEEECCccccCcCCccccccccC
Confidence 222 55555554 32 2588999987643332111110 11222222 367888888754 2
Q ss_pred cEEEEECCCCcee
Q 001178 1032 SIGVFDADSLRLR 1044 (1131)
Q Consensus 1032 ~i~vwd~~~~~~~ 1044 (1131)
.+.+||..+.+-.
T Consensus 269 ~v~~yd~~~~~W~ 281 (315)
T 4asc_A 269 DIWRYNEEEKKWE 281 (315)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEecCCCChhh
Confidence 4778898877543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.55 E-value=2.9 Score=43.95 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=102.2
Q ss_pred EEecCCCCEEEEEe-C--------------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe--CCCcEEE
Q 001178 839 VALSKNDSYVMSAG-G--------------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM--EDSTIQI 901 (1131)
Q Consensus 839 l~~s~dg~~la~~~-d--------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~--~dg~I~i 901 (1131)
--++++|.+|.-.. . ..|+..++.+.+....... .+..|++ ++..|+... .++.-.|
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-----~~~~~s~-~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-----PCIYASL-IGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-----CccEEEE-eCCEEEEEeecCCCCceE
Confidence 45678899888775 2 2477777777653332221 1236777 666676665 3444444
Q ss_pred EEee-cceeEEeecccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 902 YNVR-VDEVKTKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 902 wd~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
|.+. .+.....+..+.. .+|+++++.|.-.+. ..+|..-++..+..... . .+ . ....+.|++.+
T Consensus 132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l--~---~~----~-~~~~~~P~g~~ 197 (302)
T 3s25_A 132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF--Y---DC----N-CYKPVVLDDTN 197 (302)
T ss_dssp EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE--E---CS----C-EEEEEEEETTE
T ss_pred EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE--e---CC----C-ccceeeecCCE
Confidence 4443 2333344443432 467888888886655 67788888877553211 1 11 1 12346699999
Q ss_pred EEEEe---CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec--CCcEEEEECCCCc
Q 001178 980 LLVNH---ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT--DGSIGVFDADSLR 1042 (1131)
Q Consensus 980 l~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--dg~i~vwd~~~~~ 1042 (1131)
|+... ...|..-++..... ..+. ...+ ..|+|++++|+-+.. .+.|..-+++...
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNP-VVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCC-EECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EEEEEcCCCcEEEEEECCCCCe-EEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 98754 23577777765543 2222 2233 348889998887642 3567777766443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.56 Score=49.89 Aligned_cols=188 Identities=13% Similarity=0.074 Sum_probs=96.6
Q ss_pred CCCEEEEEeC----------CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC-----CcEEEEEeecce
Q 001178 844 NDSYVMSAGG----------GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED-----STIQIYNVRVDE 908 (1131)
Q Consensus 844 dg~~la~~~d----------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~I~iwd~~~~~ 908 (1131)
++++++.|+. ..+.+||..+.+-...-..+.......+..- ++++++.|+.+ ..+.+||..+.+
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 5666666542 3588999887653332111112211111222 56788877654 358888887664
Q ss_pred eEE--eecccccCeeEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEE
Q 001178 909 VKT--KLKGHQKHITGLAFSTNLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981 (1131)
Q Consensus 909 ~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 981 (1131)
-.. .+......-.++.+ ++++++.|+.+ ..+.+||+.+.+-..... .+.. .....++.. ++++++
T Consensus 149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~---r~~~~~~~~-~~~iyv 220 (308)
T 1zgk_A 149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA--MNTI---RSGAGVCVL-HNCIYA 220 (308)
T ss_dssp EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC--CSSC---CBSCEEEEE-TTEEEE
T ss_pred EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC--CCCc---cccceEEEE-CCEEEE
Confidence 322 22211112222233 67777777765 358899988765332221 1111 111222222 556555
Q ss_pred EEe-C-----CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCce
Q 001178 982 VNH-E-----TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRL 1043 (1131)
Q Consensus 982 ~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1043 (1131)
.|. + ..+.+||+.+.+-...-.... .......+. -++++++.|+.+ ..+.+||..+.+-
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 542 2 568999998764332211111 011222222 367888888754 4578888877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.54 Score=58.89 Aligned_cols=236 Identities=11% Similarity=0.143 Sum_probs=135.6
Q ss_pred EEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 354 DFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 354 ~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
-.+|..+ ++|.-. ..++.|+|+++.+.+....+ ...|..=.|-.+.. |+..+ +..|
T Consensus 72 IMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~aV 127 (1630)
T 1xi4_A 72 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNAV 127 (1630)
T ss_pred ccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCeE
Confidence 3456555 566554 57899999998887763221 23566666765443 43333 3579
Q ss_pred EEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEc------CCCcEEEEeCCCceeEEecCCccCeEEE
Q 001178 434 HLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCG------DDKLIRVWDLSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 434 ~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~h~~~v~~~ 503 (1131)
.-|++.+.....+ .+.-| ...|..-.-+++.+++ +++|= -.|.+.+|....+..+.+.||.+.-..+
T Consensus 128 yHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~ 204 (1630)
T 1xi4_A 128 YHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQF 204 (1630)
T ss_pred EEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhhee
Confidence 9999976432221 22333 3467888889999963 33331 3578889987777777777877655554
Q ss_pred eecccCCccEEEEEec----CCeEEEEeCCCC---ceeE-----E--ecC--CCceEEEEEEccCCCEEEEEeecCCCCc
Q 001178 504 CPHQKENIHFIFSTAV----DGKIKAWLYDNV---GSRV-----D--YDA--PGLWCTTMLYSADGSRLFSCGTSKEGDS 567 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~----dg~i~~wd~~~~---~~~~-----~--~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 567 (1131)
.....+....+++-.. .+.+++-++... .... . +.. ...-..++..++.-..+...+. -|
T Consensus 205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G 280 (1630)
T 1xi4_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YG 280 (1630)
T ss_pred ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cc
Confidence 4432222223333222 268888887543 1111 0 111 1223456777777777776665 88
Q ss_pred eEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 568 HLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 568 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.|+++|+.+|.++..-+-... +|...+......-+++....|.|.--.++...
T Consensus 281 ~~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 281 YIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred eEEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 999999999988755442222 44443333333344444455555555544443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.96 E-value=2.5 Score=44.96 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=102.7
Q ss_pred eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC----CC-------cEEEEeCCCceeEEecC---Cc
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----DK-------LIRVWDLSGRKLFQFEG---HE 497 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~----d~-------~i~iwd~~~~~~~~~~~---h~ 497 (1131)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|.....-..+.. ..
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 47888888765322 12221112222233344565 6666762 11 16777833333333221 11
Q ss_pred cCeEEEeecccCCccEEEEEecC-------CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCC--CCce
Q 001178 498 APVYSVCPHQKENIHFIFSTAVD-------GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE--GDSH 568 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~--~~~~ 568 (1131)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..........+...+++.++.++...+ ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11122222 33566677653 24677777654422221111111111122246667777764221 1346
Q ss_pred EEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcC-----CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC
Q 001178 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED-----NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 569 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
+.+||..+.+....-.........+++.. ++..++.|+.+ ..+.+||..+.+-...-..... .....+..-+
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~ 253 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVSLA 253 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEEET
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEEEC
Confidence 89999988765433221111111222222 55666666643 3577899887764433222111 1111222234
Q ss_pred CCEEEEEECC--------------CcEEEEecCCC
Q 001178 644 GNLLVVTTAD--------------QGIKILANADG 664 (1131)
Q Consensus 644 ~~~l~~~~~d--------------g~i~iw~~~~~ 664 (1131)
+.+++.|+.+ ..+.+||..+.
T Consensus 254 ~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 6666776643 34666776554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.80 E-value=4.7 Score=42.27 Aligned_cols=180 Identities=12% Similarity=0.055 Sum_probs=100.8
Q ss_pred EEEEecCCCcEEEEEcCC-------------CeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 352 SMDFHPFHHTLLVVGCGD-------------GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+--|+++|.++..+...+ ..|+..++..++... +... . +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence 345688999877776544 467777777664321 1111 1 23788
Q ss_pred CCCCEEEEEe--CC--CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec
Q 001178 419 PDGNFIGVAF--TK--HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE 494 (1131)
Q Consensus 419 pdg~~las~~--~d--~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 494 (1131)
+++++|+-.. .+ ..|...++.+.. .. .+..+.. .+|+++++. +..+......|.+-+..|.....+.
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999998876 23 345555555433 22 2443432 567889985 3334444678888887776555553
Q ss_pred CCccCeEEEeecccCCccEEEEEecC--CeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEE
Q 001178 495 GHEAPVYSVCPHQKENIHFIFSTAVD--GKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEW 572 (1131)
Q Consensus 495 ~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iw 572 (1131)
. +... ..+.| ++.+|+-...+ ..|..-+++..... .+.. ..+ ..++|++++|..+... ....|..-
T Consensus 184 ~--~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~--~~~~i~~~ 251 (302)
T 3s25_A 184 D--CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGG--DNPALCVV 251 (302)
T ss_dssp C--SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECS--SSCEEEEE
T ss_pred C--CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECC--CCcEEEEE
Confidence 2 2222 23333 34566655433 35555566554432 2222 223 3488899999876421 13577777
Q ss_pred eCCC
Q 001178 573 NESE 576 (1131)
Q Consensus 573 d~~~ 576 (1131)
++..
T Consensus 252 ~~DG 255 (302)
T 3s25_A 252 KNDG 255 (302)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 7653
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.023 Score=45.40 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCccH--HHHHHHHhccCHHHHHHH
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFNM--KYFEEKALAGEWDEIEKY 56 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~ 56 (1131)
++|+-+-|++||..+||.+++.+|.+|.|++.+- ..-..-.|+-.|..++.+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHH
Confidence 4689999999999999999999999999988751 112344555666666443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.29 E-value=3.7 Score=46.12 Aligned_cols=108 Identities=18% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee--EEeecc------cccCeeEEEEccC---CCE-EEEEeC----
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV--KTKLKG------HQKHITGLAFSTN---LNI-LVSSGS---- 937 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~------h~~~V~~l~~s~d---g~~-l~s~~~---- 937 (1131)
-.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +.. .++-+.
T Consensus 26 l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 34577999999 888776544334688887554533 222221 2456779999995 444 444332
Q ss_pred --------CCcEEEEEcCCCc--e--eeeeeeecCCCCCCCCceEEEEcCCCcEEEEE
Q 001178 938 --------DAQLIFWNTDTWE--K--RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN 983 (1131)
Q Consensus 938 --------Dg~v~lwd~~~~~--~--~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 983 (1131)
...|.-|++.... . ........+... ......++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEE
Confidence 2356666654321 1 111111222221 1357899999999877763
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.28 Score=52.30 Aligned_cols=188 Identities=10% Similarity=0.067 Sum_probs=103.2
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCC-ccCeEEEeeccc-CCccEEEEE-ecCCeEEEEeCCCCceeEEecCC----C
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGH-EAPVYSVCPHQK-ENIHFIFST-AVDGKIKAWLYDNVGSRVDYDAP----G 541 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~----~ 541 (1131)
+++.++.||.|.-.| .+|+.+.++... ..++....-... .++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 588899999999999 899998888654 123332211111 122333333 68999999998876554433221 1
Q ss_pred ceEEE---EEE-----ccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc------eEEEEEe-----CCCCE
Q 001178 542 LWCTT---MLY-----SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS------AGVVQFD-----TTRNR 602 (1131)
Q Consensus 542 ~~v~~---~~~-----s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~s-----~~~~~ 602 (1131)
.++.. ..+ ...+..+++++. +++++..|..+|+.+..+....... ..|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 014556777776 8999999999999999887432111 0111110 12356
Q ss_pred EEEEEcCCcEEEEEcCCCeEEEEEec--cCCCCCcc-----eEEEcCCCCEEEEEECCCcEEEEecCCCc
Q 001178 603 ILAAGEDNQIKFWDMDNVNMLTSTEA--EGGLPSLP-----RLRFNKEGNLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 603 l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~-----~v~~sp~~~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
++.+..+..+.+.+ .+|+ +..... .... .+. .-..+.|+.+ ++++.||.|.-+|..++.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~-~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN-VLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECC-TTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred EEEecceEEEEEEC-CCCC-eEEEeccccccc-ccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 77777777777666 3443 211100 0000 000 0011234555 557889999999887774
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.10 E-value=14 Score=41.56 Aligned_cols=253 Identities=11% Similarity=0.111 Sum_probs=138.4
Q ss_pred CCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeeEEEEe--CCCCcEEEEEeC-------CCcE---------EE
Q 001178 843 KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGME-------DSTI---------QI 901 (1131)
Q Consensus 843 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~I---------~i 901 (1131)
-||++|..-. ...|...++...++-+.+..+ ...+..++|- | +..+++.+++ ||.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 4889999988 577999999999887777644 3568888886 6 5666666653 2321 11
Q ss_pred E---EeecceeEEeecccccCeeEEEEccCCCEEEEEeCC---------------CcEEEEEcCC-------Cc--eee-
Q 001178 902 Y---NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSD---------------AQLIFWNTDT-------WE--KRK- 953 (1131)
Q Consensus 902 w---d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D---------------g~v~lwd~~~-------~~--~~~- 953 (1131)
| |..+-+...++.- .+....+...++|++.++.+.+ ..+.++++.. ++ ...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 1 1111111111110 1233345556777777665432 1345554432 10 000
Q ss_pred --eeeeecCC----C-------CCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCccc---------ceeeecCCCCC
Q 001178 954 --SIAIQLPA----G-------KLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMEC---------IRQWVPQDVLS 1009 (1131)
Q Consensus 954 --~~~~~~~~----~-------~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~---------~~~~~~~~~~~ 1009 (1131)
...+.... + ..+.....+.++|||++++++. +.++.|+|...... ...+.......
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 00010000 0 0013445688999999999975 78899999885221 11111111114
Q ss_pred CCeEEEEEccCCCEEEEEecCCcEEEEECCCC----------ceeeEecCCccccCCCCC-CCCccccEEEEEcCCCCCe
Q 001178 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSL----------RLRCRIAPSAYMSQASPN-SSQTVFPLVVTSHPQEPNQ 1078 (1131)
Q Consensus 1010 ~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~~-~~~~v~~~~v~~~p~~~~~ 1078 (1131)
-.....+|.++|....+-..|..|..|++... ..+.++.. +|-++|.-. .+.. ...++.+
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv-~YqpGH~~~~~get--------~~~dGk~ 448 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV-HYQPGHLHASLCET--------NEADGKW 448 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC-SSCEEEEEETTTTS--------TTCCSCE
T ss_pred CcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc-ccCCcccccCCCcc--------CCCCccE
Confidence 56678899999954444458999999999764 34444443 223322100 0000 0126677
Q ss_pred EEEEec---CCc----------EEEEecCCCccccccccCC
Q 001178 1079 LAVGLT---DGS----------VKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1079 l~s~~~---Dg~----------v~iW~~~~~~~~w~~~~p~ 1106 (1131)
|++... |+- -.+.|++.++++..+-.|.
T Consensus 449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~P~ 489 (638)
T 3sbq_A 449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDGPT 489 (638)
T ss_dssp EEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred EEEecccccccCcCCCCCCCCcceeEecCCCceEEEecCCC
Confidence 777654 443 3678888888885555444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.76 E-value=15 Score=41.09 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=62.3
Q ss_pred CcEEEEEEecCCC-cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceecc----CCCCCEEEEEEcCC--
Q 001178 348 SSVVSMDFHPFHH-TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK----DSSISVSRVAWSPD-- 420 (1131)
Q Consensus 348 ~~V~~~~fspdg~-~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~~~~spd-- 420 (1131)
...+.|+|.|||+ ++++ ....|.|++++.... .... . +-++. ..+.. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~-~~~~-~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGE-IFKE-P--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSC-BCSS-C--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCC-eeee-e--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 4678999999995 5555 457899999975432 1110 1 01110 00111 23567889999996
Q ss_pred --CCEEEEEeC--C----------CeEEEEEecCC--C-----ccceeeeee--cCcCCeeEEEEecCCCceEEEEEcCC
Q 001178 421 --GNFIGVAFT--K----------HLIHLYTYQGS--N-----DLCQSLEID--AHVGGVNDLAFSYPNKQLCIVTCGDD 477 (1131)
Q Consensus 421 --g~~las~~~--d----------~~i~vwd~~~~--~-----~~~~~~~~~--~h~~~V~~l~~s~d~~~~~l~s~s~d 477 (1131)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. ........|+|.|||. +.++.+..
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~--LYv~~Gd~ 159 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF--LYIILGDG 159 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC--EEEEECCT
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc--EEEEeCCC
Confidence 444443332 1 14555666432 1 011222222 2223468899999997 55555543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.54 E-value=8 Score=40.06 Aligned_cols=220 Identities=14% Similarity=0.132 Sum_probs=110.7
Q ss_pred CcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEE
Q 001178 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVA 427 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~ 427 (1131)
..|..++..... .++. . ||.|..|-......+.. +. .....|..++...+- .++.
T Consensus 24 ~~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p~------------------~~~~~i~~ia~G~~h-s~~l- 78 (282)
T 3qhy_B 24 SGVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-PA------------------ATQSGVDAIAAGNYH-SLAL- 78 (282)
T ss_dssp SSCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-CG------------------GGGSCCCEEEECSSE-EEEE-
T ss_pred CCCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-Cc------------------cCCCCEEEEEeCCCE-EEEE-
Confidence 356666655443 3444 4 89999998765443321 00 011246666655432 3333
Q ss_pred eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEee
Q 001178 428 FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCP 505 (1131)
Q Consensus 428 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~ 505 (1131)
. ||.|..|-......+.....+ ...|..++...+-. +++ . |+.|..|- ..++.-. .......|..++.
T Consensus 79 ~-~G~v~~wG~n~~Gqlg~P~~~---~~~v~~ia~G~~hs--~al--~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~ 148 (282)
T 3qhy_B 79 K-DGEVIAWGGNEDGQTTVPAEA---RSGVDAIAAGAWAS--YAL--K-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDG 148 (282)
T ss_dssp E-TTEEEEEECCTTSTTCCCGGG---SSSEEEEEEETTEE--EEE--E-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEE
T ss_pred E-CCEEEEeeCCCCCCCCCCccc---CCCeEEEECcCCEE--EEE--e-CCeEEEecCCCCCcCCC-CccCCCCeEEEEc
Confidence 4 889999986653333211111 24677777765533 333 3 89999997 3333211 1122345666654
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC-CeeeEEEe
Q 001178 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE-GALKRTYI 584 (1131)
Q Consensus 506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~ 584 (1131)
. ....++ -. ||.|..|-.......-........|..++...+...++ . ++.++.|-... +++- +.
T Consensus 149 G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg--~p 214 (282)
T 3qhy_B 149 G---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTT--VP 214 (282)
T ss_dssp C---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTC--CC
T ss_pred c---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCC--CC
Confidence 2 212333 34 79999996554332211111123466665544333322 3 77888886543 2221 01
Q ss_pred cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC
Q 001178 585 GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 585 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 619 (1131)
......+..++... .+.++.. ||.|+.|-...
T Consensus 215 ~~~~~~v~~i~~G~--~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 215 TEALSGVSAIASGE--WYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp GGGGSSCCEEEECS--SCEEEEE-TTEEEEESTTC
T ss_pred cccCCCceEEEcCC--CEEEEEE-CCEEEEecCCC
Confidence 01112455555443 2333333 89999997654
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.95 E-value=12 Score=38.74 Aligned_cols=183 Identities=13% Similarity=0.051 Sum_probs=97.0
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.|..++...+-. ++. .+|.|..|-....-.+..-..-...|..++... ...+.-+ ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 455555543322 223 378888886543221111111124677777754 2333345 9999999765422121122
Q ss_pred ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCC
Q 001178 915 GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGS 994 (1131)
Q Consensus 915 ~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~ 994 (1131)
.....|..++...+.. ++ -. ||.|+.|-......... +.. ....+..++.......+ . .++.++.|-..
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg~-p~~-----~~~~v~~i~~G~~hs~a-l-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTTV-PAE-----AQSGVDDVAGGIFHSLA-L-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECSSEEEE-E-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCCC-cee-----cCCCeEEEEecCCEEEE-E-ECCeEEEEECC
Confidence 2335677777654432 22 33 79999997765322110 111 01456677665554444 4 79999999776
Q ss_pred CcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCC
Q 001178 995 KMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 995 ~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
....+..-... ...|..++...+..++++ ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCEEEEE---TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEEEEEE---CCEEEEecCCC
Confidence 53322211111 346777776544433333 99999997654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=6.8 Score=46.86 Aligned_cols=199 Identities=8% Similarity=0.031 Sum_probs=100.2
Q ss_pred CCCCEEEEEeCC----CeEEEEEecCCCccceeee-----eecCcCCeeEEEEec-CCCceEEEEEcCC------CcEEE
Q 001178 419 PDGNFIGVAFTK----HLIHLYTYQGSNDLCQSLE-----IDAHVGGVNDLAFSY-PNKQLCIVTCGDD------KLIRV 482 (1131)
Q Consensus 419 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~-----~~~h~~~V~~l~~s~-d~~~~~l~s~s~d------~~i~i 482 (1131)
-++..++.|+.+ ..+.+||..+++-...... +...... .+++..+ +++ +++.||.+ +.+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQ--LLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTE--EEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCE--EEEEcCCCCCCCccccEEE
Confidence 567777777753 4688999887642211101 1111111 2233333 565 66666643 35778
Q ss_pred EeCCCceeEEecC---CccCeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeEEe-----cCCCceEEEEEEccC
Q 001178 483 WDLSGRKLFQFEG---HEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDY-----DAPGLWCTTMLYSAD 552 (1131)
Q Consensus 483 wd~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~~ 552 (1131)
||.....-..+.. ....-.++.+ .++.+++.|+.++ .+.+||..+..-...- ........++.+..+
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~---~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSL---PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEEC---TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EeCCCCcEEECCCCCCCcccceEEEE---cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 8833322222211 1111122221 2456777777655 6888888765422211 111112233555655
Q ss_pred -CCEEEEEeecCCC---CceEEEEeCCCCe------eeEEEec-ccCCceEEEEEeCCCCEEEEEEc--------CCcEE
Q 001178 553 -GSRLFSCGTSKEG---DSHLVEWNESEGA------LKRTYIG-FRKKSAGVVQFDTTRNRILAAGE--------DNQIK 613 (1131)
Q Consensus 553 -g~~l~~~~~~~~~---~~~i~iwd~~~~~------~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~--------dg~i~ 613 (1131)
++.++.|+...++ ...+.+||+.+.. ....-.. .....-.+++...++..++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 6666676653222 3578999998877 2222111 11111222333333666777764 35699
Q ss_pred EEEcCCCeEE
Q 001178 614 FWDMDNVNML 623 (1131)
Q Consensus 614 iwd~~~~~~~ 623 (1131)
+||..+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887655
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.80 E-value=19 Score=42.81 Aligned_cols=245 Identities=8% Similarity=-0.014 Sum_probs=121.5
Q ss_pred EEEE-EecCCCcEEEEEcCC----CeEEEEECCCCcccccccceeecccccccceeceeccC---CCCCEEEEEEcCCCC
Q 001178 351 VSMD-FHPFHHTLLVVGCGD----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD---SSISVSRVAWSPDGN 422 (1131)
Q Consensus 351 ~~~~-fspdg~~llasg~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~spdg~ 422 (1131)
..+. ++||+++++++=|.. .+|+++|+.+++.+.. .|. ... ++ -......++|..+..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~------------k~~~~~~~~~~~~~W~d~~~ 197 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PIT------------NSGKLLEGKFTYPTWINKDT 197 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBC------------TTCCBCCEETCCEEEEETTE
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccc------------ccccccccccceeeEECCCE
Confidence 3444 889998766554433 4699999999987752 111 000 00 000113346764333
Q ss_pred EEEEE----------eCCCeEEEEEecCCCccceeeeeecCcCC-eeEEEEecCCCc---eEEEEEcCC---CcEEEEeC
Q 001178 423 FIGVA----------FTKHLIHLYTYQGSNDLCQSLEIDAHVGG-VNDLAFSYPNKQ---LCIVTCGDD---KLIRVWDL 485 (1131)
Q Consensus 423 ~las~----------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~-V~~l~~s~d~~~---~~l~s~s~d---~~i~iwd~ 485 (1131)
++++. +....|+.|.+-+...- -...+.+.... -.+...+++++. ..+++.+.+ ..+.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 276 (711)
T 4hvt_A 198 IIFNLVLHKNEITSSLYPNSLYIWKRGESIEK-AKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDT 276 (711)
T ss_dssp EEECCCCSTTCBCTTSSBCEEEEEETTSCGGG-CEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEEC
T ss_pred EEEEeCCCCCCcCcCCCCCEEEEEECCCChHH-CeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcC
Confidence 33321 11246888887654221 11123333333 234556677764 135554322 34555563
Q ss_pred C---CceeEEecCCccCeEEEeecccCCccEEEEE----------ecCCeEEEEeCCCCc-------eeEE-e-cCCCce
Q 001178 486 S---GRKLFQFEGHEAPVYSVCPHQKENIHFIFST----------AVDGKIKAWLYDNVG-------SRVD-Y-DAPGLW 543 (1131)
Q Consensus 486 ~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~~wd~~~~~-------~~~~-~-~~~~~~ 543 (1131)
. ++ +..+....... -+. + .++.+++.. ...+.|...++.+.. .... + ......
T Consensus 277 ~~~~~~-~~~l~~~~~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (711)
T 4hvt_A 277 KYKNLK-LQKINMPSDAT-LQG-S--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEV 351 (711)
T ss_dssp SSSSCE-EEECCSCTTCE-EEE-E--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEE
T ss_pred CCCCCc-ceEeecCCcce-Eee-e--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCe
Confidence 3 33 23332111111 011 1 122344422 246778888887642 1122 2 223446
Q ss_pred EEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe-eeEE-EecccCCceEEEEEeCCCCEEE-EEE---cCCcEEEEEc
Q 001178 544 CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA-LKRT-YIGFRKKSAGVVQFDTTRNRIL-AAG---EDNQIKFWDM 617 (1131)
Q Consensus 544 v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~s~~~~~l~-~~~---~dg~i~iwd~ 617 (1131)
+..+.+..+ ..+++... ++...+.+++..++. .... +.......+.....++++..++ +.+ .-+.++.+|+
T Consensus 352 l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 352 FNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 778888876 34444432 345678899887775 2333 3222223566666667765444 333 3467888887
Q ss_pred C
Q 001178 618 D 618 (1131)
Q Consensus 618 ~ 618 (1131)
.
T Consensus 429 ~ 429 (711)
T 4hvt_A 429 T 429 (711)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=6.3 Score=47.15 Aligned_cols=198 Identities=13% Similarity=0.162 Sum_probs=105.6
Q ss_pred CCCCEEEEEe-C----CeEEEEECCCceeEEEE-e-----CCCC--CeeEEEEeCCCCcEEEEEeCCC------cEEEEE
Q 001178 843 KNDSYVMSAG-G----GKVSLFNMMNFKVMTTF-M-----SPPP--ASTFLAFHPQDNNIIAIGMEDS------TIQIYN 903 (1131)
Q Consensus 843 ~dg~~la~~~-d----g~i~vwd~~~~~~~~~~-~-----~~~~--~i~~l~~s~~~~~~la~g~~dg------~I~iwd 903 (1131)
.++..++.|+ + ..+.+||..+++-...- . .+.. .-..+.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777766 2 35889998876543332 1 1111 233344432 567788887543 578888
Q ss_pred eeccee--EEeecccccCeeEEEEccCCCEEEEEeCCC--cEEEEEcCCCceeeeeee-ecCCCCCCCCceEEEEcCC-C
Q 001178 904 VRVDEV--KTKLKGHQKHITGLAFSTNLNILVSSGSDA--QLIFWNTDTWEKRKSIAI-QLPAGKLPVGETRVQFHSD-Q 977 (1131)
Q Consensus 904 ~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg--~v~lwd~~~~~~~~~~~~-~~~~~~~~~~v~~v~~s~d-~ 977 (1131)
..+.+- +..+......- +++...+++.++.||.++ .+.+||+.+.+-...... ..+... .....+.+..+ +
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r--~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS--LVSAGLEFDPVSK 551 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC--CBSCEEEEETTTT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc--cceeEEEEeCCCC
Confidence 877532 22222111111 222223788888888765 689999988653222210 011111 22234555655 5
Q ss_pred cEEEEEe---C-----CeEEEEeCCCccc-----ceeeecCCCCCCCeEEEEEccCCCEEEEEec--------CCcEEEE
Q 001178 978 VRLLVNH---E-----TQLAIYDGSKMEC-----IRQWVPQDVLSSPISSAAYSCNSQLIYATFT--------DGSIGVF 1036 (1131)
Q Consensus 978 ~~l~~~~---d-----~~i~vwd~~~~~~-----~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~--------dg~i~vw 1036 (1131)
++++.|. + ..+.+||+.+... ...+.........-.+++...++++++.|+. ...|.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 5555543 2 4588999987762 1121110000111123333344888888884 3469999
Q ss_pred ECCCCcee
Q 001178 1037 DADSLRLR 1044 (1131)
Q Consensus 1037 d~~~~~~~ 1044 (1131)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99887654
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=89.65 E-value=27 Score=38.16 Aligned_cols=263 Identities=11% Similarity=0.016 Sum_probs=122.1
Q ss_pred CCCeeEEEecC--CCCEEEEEeCC----eEEEEECCCceeEEEEe------C--------CCCCeeEEEEeCCC-CcEEE
Q 001178 833 EDVVPCVALSK--NDSYVMSAGGG----KVSLFNMMNFKVMTTFM------S--------PPPASTFLAFHPQD-NNIIA 891 (1131)
Q Consensus 833 ~~~i~~l~~s~--dg~~la~~~dg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~~-~~~la 891 (1131)
...|.+|++.| ++.+.+.+..| .|...+ ..++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666665554 343332 2222211111 1 11247788998633 34455
Q ss_pred EEeCCCcEEEEEeecceeEEeecc-------------------cccCeeEEEEccC-CCEEEEEeCCCcEEEEEcCCCce
Q 001178 892 IGMEDSTIQIYNVRVDEVKTKLKG-------------------HQKHITGLAFSTN-LNILVSSGSDAQLIFWNTDTWEK 951 (1131)
Q Consensus 892 ~g~~dg~I~iwd~~~~~~~~~~~~-------------------h~~~V~~l~~s~d-g~~l~s~~~Dg~v~lwd~~~~~~ 951 (1131)
++...+.|...+ +.++.-..+.. ....|.+|.++|. ...|..+..++.|...+ +.++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC
Confidence 555555544332 22222112211 1235789999873 34444444444444332 22211
Q ss_pred eeeeeeecCCCC-------CCCCceEEEEcCC-CcEEEEEeCCeEEEEeCCCcccceeeecCCCC--CCCeEEEEEcc-C
Q 001178 952 RKSIAIQLPAGK-------LPVGETRVQFHSD-QVRLLVNHETQLAIYDGSKMECIRQWVPQDVL--SSPISSAAYSC-N 1020 (1131)
Q Consensus 952 ~~~~~~~~~~~~-------~~~~v~~v~~s~d-~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~v~~i~~s~-d 1020 (1131)
-........... ....+..+++.|+ ...|.++..+.|...+-. ++....+...... ...+.+++++| +
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCCC
Confidence 000000000000 0124778899886 355666666666655422 3222222211100 13467788876 3
Q ss_pred CCEEEEEec-----------CCcEEEEECCC-CceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcE
Q 001178 1021 SQLIYATFT-----------DGSIGVFDADS-LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSV 1088 (1131)
Q Consensus 1021 g~~l~s~~~-----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v 1088 (1131)
...|.++.. ++...+|.... |+....+.. .++... .-..+....++++|.++..|..++.++.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~--~~~~~~~~~~~~~p~~~~~l~~g~~~g~- 364 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQ--AWLTVKRQAMTADAHAPVGVYFGTTGGE- 364 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSS--CCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCcc--ccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence 344444432 33345555443 454444431 111100 0001111246777766666777776665
Q ss_pred EEEecCCCccccccccC
Q 001178 1089 KVIEPSETERKWGVAVP 1105 (1131)
Q Consensus 1089 ~iW~~~~~~~~w~~~~p 1105 (1131)
||.-..+...|.....
T Consensus 365 -l~~S~D~G~tW~~~~~ 380 (394)
T 3b7f_A 365 -IWASADEGEHWQCIAS 380 (394)
T ss_dssp -EEEESSTTSBCEEEEC
T ss_pred -EEEECCCCCCceEccc
Confidence 4555555566887643
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=85.88 E-value=1.3 Score=40.86 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=47.7
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS 131 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 131 (1131)
++.. ++|.|+-+.||||+..|..++|..++++--.-+.....+.+++|+.+....++.+.+...
T Consensus 48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~ 111 (156)
T 2nxp_A 48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETML 111 (156)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence 4444 899999999999999999999999998654444444567888888777665554444433
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=85.88 E-value=22 Score=42.25 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=115.1
Q ss_pred EEE-EcCCCCEEEEE-e----CCCeEEEEEecCCCccceeeeeecCc-----CCeeEEEEecCCCceEEEEE--------
Q 001178 414 RVA-WSPDGNFIGVA-F----TKHLIHLYTYQGSNDLCQSLEIDAHV-----GGVNDLAFSYPNKQLCIVTC-------- 474 (1131)
Q Consensus 414 ~~~-~spdg~~las~-~----~d~~i~vwd~~~~~~~~~~~~~~~h~-----~~V~~l~~s~d~~~~~l~s~-------- 474 (1131)
.+. ++||+++++.+ | ....++++|+.+++.+.-...-.+.. .....++|..++. ++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcC
Confidence 344 88999987765 2 22479999999987553211100000 0124458874444 44432
Q ss_pred --cCCCcEEEEeC-CC--ceeEEecCCccCeE-EEeecccCCcc---EEEEEecC---CeEEEEeCCCCce-eEEecCCC
Q 001178 475 --GDDKLIRVWDL-SG--RKLFQFEGHEAPVY-SVCPHQKENIH---FIFSTAVD---GKIKAWLYDNVGS-RVDYDAPG 541 (1131)
Q Consensus 475 --s~d~~i~iwd~-~~--~~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~s~d---g~i~~wd~~~~~~-~~~~~~~~ 541 (1131)
+....|+.|.. +. .-...+.+....+. +.....++... .+++.+.+ ..+.+.+.+.... ...+....
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 12346777762 11 11223333333332 22222333222 34444322 3455556543222 23333332
Q ss_pred ceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCCCCe-------eeEE-EecccCCceEEEEEeCCCCEEEEEE
Q 001178 542 LWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNESEGA-------LKRT-YIGFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 542 ~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
.. .+....++.+++....+ .-..+.|...++.++. ..+. +.......+..+.+..+ ..+++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12334456555533211 0136778888887642 2222 43334445667777764 5666666
Q ss_pred cCCc--EEEEEcCCCe-EEEE-EeccCCCCCcceEEEcCCCCEE-EEEEC---CCcEEEEecC
Q 001178 608 EDNQ--IKFWDMDNVN-MLTS-TEAEGGLPSLPRLRFNKEGNLL-VVTTA---DQGIKILANA 662 (1131)
Q Consensus 608 ~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~i~~v~~sp~~~~l-~~~~~---dg~i~iw~~~ 662 (1131)
.++. |+++++.++. .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6664 6677776664 2222 332221 235555555665433 33332 2455555543
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=83.42 E-value=0.77 Score=41.33 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=43.0
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccc
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1131)
++.. ++|.|+-+.||||+..|..++|..++.+--.-+... .+.+++|+.+....++.
T Consensus 29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 4444 999999999999999999999999998655444444 67777777766555444
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=82.70 E-value=56 Score=35.10 Aligned_cols=155 Identities=9% Similarity=0.127 Sum_probs=88.0
Q ss_pred eEEEEECCCc--eeEEEEeCC------CCCeeEEEEe---CC---CCcEEEEEe-CCCcEEEEEeecceeEEeecccccC
Q 001178 855 KVSLFNMMNF--KVMTTFMSP------PPASTFLAFH---PQ---DNNIIAIGM-EDSTIQIYNVRVDEVKTKLKGHQKH 919 (1131)
Q Consensus 855 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~h~~~ 919 (1131)
+|.+||+.+. +.++++.-+ ......+++. |. ++.++..+. ..+.|.|||+.+++.-..+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 5778888888 888776532 2346777777 21 133444443 4677999999998876655 321
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC----CcEEEEEeCCeEEEEeCCC
Q 001178 920 ITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD----QVRLLVNHETQLAIYDGSK 995 (1131)
Q Consensus 920 V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~d~~i~vwd~~~ 995 (1131)
|.|+.....+. +|.-.-| ...+..++++|+ ++.|....=..-++|.+.+
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~--------------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEF--------------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEE--------------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceEE--CCEEeEe--------------------ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 34542121111 2221111 056788899998 7777775433334444332
Q ss_pred -----c---ccceeeecCCCCCCCeEEEEEc-cCCCEEEEEecCCcEEEEECCC
Q 001178 996 -----M---ECIRQWVPQDVLSSPISSAAYS-CNSQLIYATFTDGSIGVFDADS 1040 (1131)
Q Consensus 996 -----~---~~~~~~~~~~~~~~~v~~i~~s-~dg~~l~s~~~dg~i~vwd~~~ 1040 (1131)
. ..++. .+..+..+.-..+++. .+|.+.++--+.+.|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 1 11222 1221112334456675 5676666666789999999875
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=81.25 E-value=0.82 Score=41.63 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcc
Q 001178 66 NRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121 (1131)
Q Consensus 66 ~~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1131)
.++.. ++|.|+-+.||||+..+ .++|..++.+--.-+.....+.+++|+.+...
T Consensus 30 ~EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p 83 (148)
T 2j49_A 30 PELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSI 83 (148)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSH
T ss_pred HHHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCH
Confidence 34455 99999999999999999 99999999754333322223444455444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1131 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 9e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 9e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 9e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.003 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.4 bits (207), Expect = 6e-18
Identities = 48/341 (14%), Positives = 103/341 (30%), Gaps = 35/341 (10%)
Query: 302 SDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTM--HQGSSVVSMDFHPFH 359
+ EQLK ++R ++ + + T+ H + +M +
Sbjct: 9 QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGT-D 66
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
LLV DG++ +WD ++ + P + + C+ V + ++
Sbjct: 67 SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCI-------- 471
V ++ L Y +I G + Q
Sbjct: 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD 186
Query: 472 -------------VTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFST 517
V+ D ++WD+ G F GHE+ + ++C N +
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATG 244
Query: 518 AVDGKIKAWLYDNVGSRVDYDAPGLWC--TTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575
+ D + + + Y + C T++ +S G L + D + W+
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDAL 300
Query: 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616
+ G + + + + D+ +K W+
Sbjct: 301 KADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 1e-14
Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 833 EDVVPCVALSKNDSYVMSAGGG---KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
E + + N + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
+ G +D +++ + L GH ++ L + + + + D+ L WN
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.8 bits (164), Expect = 2e-12
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 8/180 (4%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918
+ TT + D + G D++ ++++VR + GH+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978
I + F N N + DA ++ ++ + + + T V F
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI----TSVSFSKSGR 283
Query: 979 RLLVNHET-QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
LL ++ ++D K + D + +S + + + D + +++
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 0.002
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
+ L+GH I + + T+ +LVS+ D +LI W++ T K +I
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI 93
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 2e-17
Identities = 49/314 (15%), Positives = 95/314 (30%), Gaps = 54/314 (17%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS------------------- 385
H+ V + FHP +++V D I +WD + +
Sbjct: 16 HRSP-VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 386 ----KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS 441
+ + + +VS V+ P+G+ I A I ++ Q
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 442 NDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK-LFQFEGHEAPV 500
+ H V + + I +C +D+ +RVW ++ ++ + H V
Sbjct: 134 YCVKT---FTGHREWVRMVRPNQDGTL--IASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 501 YSVCPHQKENI------------------HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL 542
+ + + F+ S + D IK W +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNR 602
W +L+ + G + SC D L W+ +T + F T
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 603 ILAAGEDNQIKFWD 616
++ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 4e-12
Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 12/216 (5%)
Query: 450 IDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQK 508
+ H V + F P + +V+ +D I+VWD +G +GH V +
Sbjct: 13 LSGHRSPVTRVIFH-PVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 509 ENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSH 568
+ S D IK W + +++ +G + S D
Sbjct: 71 GKLLASCSA--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS----RDKT 124
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628
+ W G +T+ G ++ +V+ + I + D ++ W +
Sbjct: 125 IKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Query: 629 EGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664
+ + + E + ++ A + G
Sbjct: 184 HRHVVE--CISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.3 bits (160), Expect = 5e-12
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 2/115 (1%)
Query: 831 NAEDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
+ K +++S + ++++ + T + + FH
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKF 261
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFW 944
I +D T+++++ + L H+ +T L F +V+ D + W
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.0 bits (141), Expect = 9e-10
Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 36/190 (18%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQ------ 885
+ V V +++ + + S V ++ + + +++ P+
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202
Query: 886 -------------DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932
+ G D TI++++V L GH + G+ F + +
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992
+S D L W+ K++ H V L H+T +
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTL----------------NAHEHFVTSLDFHKTAPYVVT 306
Query: 993 GSKMECIRQW 1002
GS + ++ W
Sbjct: 307 GSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.2 bits (139), Expect = 2e-09
Identities = 41/297 (13%), Positives = 97/297 (32%), Gaps = 36/297 (12%)
Query: 764 TDSASKVARLLYTNSG--IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821
+ S ++ +G L ++ VQ + + + S A + +Q
Sbjct: 34 SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE- 92
Query: 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLA 881
+ + +V + D V ++ + ++ + + TF +
Sbjct: 93 --CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 882 FHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF---------------- 925
+ D +IA D T++++ V E K +L+ H+ + +++
Sbjct: 151 PNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 926 ----STNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
L+S D + W+ T + L V V FHS +L
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDNWV--RGVLFHSGGKFIL 263
Query: 982 VNHET-QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFD 1037
+ L ++D C++ + ++S + + + D ++ V++
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTL---NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (133), Expect = 9e-09
Identities = 37/273 (13%), Positives = 81/273 (29%), Gaps = 31/273 (11%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
D V ++ + + S M + + + I
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
D TI+++ V+ GH++ + + + + ++ S +D + W T E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 953 KSI---------------AIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997
+ + + ET+ L + + + ++D S
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQAS 1057
C+ V D + + + + I + D ++ V+D + R +
Sbjct: 239 CLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------- 285
Query: 1058 PNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090
V L H + G D +VKV
Sbjct: 286 NAHEHFVTSLDF--HKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.4 bits (111), Expect = 5e-06
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
K L GH+ +T + F +++VS+ DA + W+ +T + +++
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 9/178 (5%)
Query: 481 RVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP 540
+ W + + GH +PV V H + + S + D IK W Y+
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTR 600
+ + G L SC + E +
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ I++A D IK W++ + + + R N++G L+ + DQ +++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 31/225 (13%), Positives = 86/225 (38%), Gaps = 16/225 (7%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGS 937
T + FHP +++ ED+TI++++ + + LKGH + ++F + +L S +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 938 DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKME 997
D + W+ +E +++ G + + + + + + +++
Sbjct: 80 DMTIKLWDFQGFECIRTM-----HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 998 CIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPS------- 1050
C++ + + + + LI + D ++ V+ + + +
Sbjct: 135 CVKTFTGH---REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 1051 AYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSE 1095
++ ++S +S + L G D ++K+ + S
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.8 bits (195), Expect = 3e-16
Identities = 60/399 (15%), Positives = 110/399 (27%), Gaps = 75/399 (18%)
Query: 286 HPRAPSNTLGMIDYP------SSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRA 339
H P N P D + + L+ + Y P+ ++
Sbjct: 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYN-PALPREIDVE----- 54
Query: 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMM 399
+ ++ S V + F L GC + ++ V LV++ +
Sbjct: 55 LHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVS-DGSLVARLSDDSAANKDPEN 111
Query: 400 LQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG---- 455
L + S + + V +SPDG F+ LI ++ + + + +
Sbjct: 112 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171
Query: 456 ---------------------------------GVNDLAFSYPNKQLCIVTCGDDKLIRV 482
P I D+ +RV
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 483 WDLSGRKLFQ--------FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSR 534
WD L + GH+ VYSV + + S ++D +K W N ++
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNANNK 289
Query: 535 VDYDAPGLWCTTMLYSADGSRLFSCGTSKEG--------DSHLVEWNESEGALKRTYIGF 586
D P + Y + S T++ D ++ W++ G G
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349
Query: 587 RKKSAGV-----VQFDTTRNRILAAGEDNQIKFWDMDNV 620
R V N D + + W +
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 6e-10
Identities = 40/320 (12%), Positives = 98/320 (30%), Gaps = 24/320 (7%)
Query: 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841
LA N ++++ + A ++ + + +++ + V
Sbjct: 76 YLATGCNKTTQVYRVSDGSL------VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 842 SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQI 901
S + ++ + ++ + + + + + + + + G D T++I
Sbjct: 130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 902 YNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPA 961
+++R + L T + + + D + W+++T + + + +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 962 GKLPVGE-TRVQFHSDQVRLLV----------NHETQLAIYDGSKMECIRQWVPQDVLSS 1010
G V F D ++ N + D V
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 1011 PISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVT 1070
+ S A + N + I + D + +D S + Q NS +V +
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-------QGHRNSVISVAVANGS 362
Query: 1071 SHPQEPNQLAVGLTDGSVKV 1090
S E N A G D ++
Sbjct: 363 SLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.4 bits (142), Expect = 1e-09
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 20/132 (15%)
Query: 833 EDVVPCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPAS------------TF 879
+D V V +++ V+S V L+N+ N + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLA------FSTNLNILV 933
+A ++ I G +D + ++ + L+GH+ + +A N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 934 SSGSDAQLIFWN 945
+ D + W
Sbjct: 373 TGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 2e-05
Identities = 42/282 (14%), Positives = 100/282 (35%), Gaps = 33/282 (11%)
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPAS--------------- 877
VV CV S + Y+ + ++ + + ++ A+
Sbjct: 62 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 121
Query: 878 ---TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
+ F P D +A G ED I+I+++ ++ L+GH++ I L + + + LVS
Sbjct: 122 LYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 935 SGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV--NHETQLAIYD 992
D + W+ T + +++I+ G T V + + + + + ++D
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIE-------DGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 993 GSKMECIRQWVPQDVL----SSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIA 1048
+ + ++ + S ++ + Q + + D S+ +++ + +
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 1049 PSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090
+ F L V + + + G D V
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 6e-05
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 17/254 (6%)
Query: 874 PPASTFL-AFHPQDNNIIAIGMEDSTIQIYN------VRVDEVKTKLKGHQKHITGLAFS 926
P FL Q + +YN + V+ K+ H + + FS
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL--DHTSVVCCVKFS 71
Query: 927 TNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF--HSDQVRLLVNH 984
+ L +G + + ++ A K P +R +
Sbjct: 72 NDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLR 1044
+ G++ IR W ++ I L Y D + ++R+
Sbjct: 131 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190
Query: 1045 CRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKWGVAV 1104
++ + + TV P + +A G D +V+V + +
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVA-----VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 1105 PVDNGTDNCRTVTS 1118
++GT + +V S
Sbjct: 246 ENESGTGHKDSVYS 259
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 5e-14
Identities = 57/344 (16%), Positives = 104/344 (30%), Gaps = 29/344 (8%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVG---LRERLVSKP 387
W +L H + + F +V G D + +W LV
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57
Query: 388 FKIWDMS---NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDL 444
+W N + + + HL GS D
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 445 CQSL------EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK-LFQFEGHE 497
+ + + G +V+ D +++VWD L +GH
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLF 557
VYS+ + S ++D I+ W D + G T + L
Sbjct: 178 NRVYSLQFDGI----HVVSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILV 231
Query: 558 SCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617
S DS + W+ G +T G K + V +N ++ + +D +K WD+
Sbjct: 232 SG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 618 DN---VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ L + E+ G + R+R + + V + + +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 33/237 (13%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
C V ++ + +V G D + +WD L + + +
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS------ 182
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461
DG + I ++ + N + + H + +
Sbjct: 183 ---------------LQFDGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGME 224
Query: 462 FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
+V+ D +++WD+ + Q S + N +F+ +++ DG
Sbjct: 225 LKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG 280
Query: 522 KIKAWLYDN-----VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+K W ++ G + S + ++ L+ +
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 14/121 (11%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 837 PCVALSKNDSYVMSAGG-GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
+ D+ ++S V ++++ + + T P + + + N + +
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 896 DSTIQIYNVRVDEVKTKLK-----GHQKHITGLAFSTNLNILVSSGSD----AQLIFWNT 946
D T+++++++ E L G + + S + + +L+ +
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Query: 947 D 947
D
Sbjct: 339 D 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 27/236 (11%), Positives = 65/236 (27%), Gaps = 42/236 (17%)
Query: 881 AFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL-------- 932
N I G +D+T+++++ + L GH + N+ I
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 933 --------------VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978
+ + + + +++ + + H V
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 979 RLLVNHETQLAIYDGSKMECIRQWVPQDVLSS----PISSAAYSCNSQLIYATFTDGSIG 1034
R + ++ M + + L + + + + + D SI
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 1035 VFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKV 1090
V+D ++ + T + + + N L G D +VK+
Sbjct: 201 VWDVETGNCIH---------------TLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.6 bits (163), Expect = 3e-12
Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 5/178 (2%)
Query: 878 TFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK--TKLKGHQKHITGLAFSTNLNILVSS 935
+ A++ D IAI + + IY ++ +LK H +TG+ ++ + N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 936 GSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSK 995
G+D W + ++ I V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 996 MECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYM 1053
+ S + S + NS L+ A D +F A + R AP+ +
Sbjct: 130 WWVCKHIKKPIR--STVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 8e-09
Identities = 29/283 (10%), Positives = 72/283 (25%), Gaps = 30/283 (10%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408
+ ++ T + + + E+ +++ + + K +
Sbjct: 9 PISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----------------EH 50
Query: 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468
+ V+ V W+PD N I T +++T +G + + + K
Sbjct: 51 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110
Query: 469 LCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLY 528
+ + + + + N + + + D K + +
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170
Query: 529 DNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGT----SKEGDSHLVEWNESEGALKRTYI 584
SCG + V W + +
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 585 GFRKKSAGVVQFD--------TTRNRILAAGEDNQIKFWDMDN 619
+ A + T + ++AAG D + D+
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 18/148 (12%), Positives = 36/148 (24%), Gaps = 27/148 (18%)
Query: 341 ACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMML 400
A + ++++ F LV D L+ +S +
Sbjct: 237 ATLASETLPLLAVTFITESS--LVAAGHDCFPVLFTYDSAA---------GKLSFGGRLD 285
Query: 401 QAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDL 460
++ + D L + H V+ +
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS--------------LHKNSVSQI 331
Query: 461 AFSYPNKQLC--IVTCGDDKLIRVWDLS 486
+ K C T G D + +WD+
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 0.003
Identities = 12/118 (10%), Positives = 27/118 (22%), Gaps = 6/118 (5%)
Query: 838 CVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDS 897
V S V + LF + +F + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDK 306
Query: 898 TIQIYNVRVDEVKTKLKGHQKHITGLAFS----TNLNILVSSGSDAQLIFWNTDTWEK 951
H+ ++ ++ + ++G D + W+ + E
Sbjct: 307 KASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 43/303 (14%), Positives = 83/303 (27%), Gaps = 43/303 (14%)
Query: 340 VACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL---------------- 383
+ C V + + +V G D I +WD E
Sbjct: 8 IHCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 384 ---VSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQG 440
+ + + + + + + + I ++
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 441 SNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAP 499
D+ + H VN + F IV+ D+ I+VW+ + + GH+
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180
Query: 500 VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559
+ + + S + D I+ W D G D R+ S
Sbjct: 181 IACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG 234
Query: 560 GTSKEGDSHLVEWNESEGALKRTYIG------FRKKSAGVVQFDTTRNRILAAGEDNQIK 613
D + W+ R G + S V + +I+++ D+ I
Sbjct: 235 ----AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTIL 290
Query: 614 FWD 616
WD
Sbjct: 291 IWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 38/240 (15%), Positives = 65/240 (27%), Gaps = 45/240 (18%)
Query: 453 HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENI 511
GV L + + Q IV+ D I++WD + GH V + ++ I
Sbjct: 14 TSKGVYCLQY---DDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 512 HFI-----FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKE-- 564
V+ + V + ++ + +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129
Query: 565 --------------------------GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598
GD + WN S RT G G+
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQY 186
Query: 599 TRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+++ DN I+ WD++ L E L R + +V D IK+
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKV 242
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 15/119 (12%)
Query: 837 PCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGME 895
L D V+S + L+++ + DN I G
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAY 236
Query: 896 DSTIQIYNVRVDEVKTK---------LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D I+++++ L H + L F +VSS D ++ W+
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 2e-04
Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 26/205 (12%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
D+ I G+ D+TI+I++ E K L GH + L + + I SS S ++ N
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83
Query: 946 TDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQ 1005
T + ++ + + + + +A++D + I
Sbjct: 84 TGEMLNTLIHHCE---------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 1006 DVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVF 1065
+ ++ + + I + D +I V++ + +
Sbjct: 135 VGHRAAVNV--VDFDDKYIVSASGDRTIKVWNTSTCEFVRTL---------------NGH 177
Query: 1066 PLVVTSHPQEPNQLAVGLTDGSVKV 1090
+ + G +D ++++
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 5e-12
Identities = 37/345 (10%), Positives = 94/345 (27%), Gaps = 32/345 (9%)
Query: 316 SVDEATYPVPSQQATWSLDDLPRAVAC--TMHQGSSVVSMDFHPFHHTLLVVGCGDGEIT 373
+ D PVP +PR T++ G V ++ T V G G +
Sbjct: 18 TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGGKGCVK 75
Query: 374 LWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433
+WD+ + + + PDG + V +
Sbjct: 76 VWDI--------------SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121
Query: 434 HLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF 493
++ ++ + + G+ + + +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVR 177
Query: 494 EGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG 553
+ + C + +++ +D +++W +D ++ Y G
Sbjct: 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTG 236
Query: 554 SRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613
L S + V + + + ++F ++ G+DN +
Sbjct: 237 EWLAVGMESSNVEVLHVNKP------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 614 FWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
W + ++ + S + + +V + D+ +
Sbjct: 291 AWRTPYGASIFQSKESSSVLS---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 5e-10
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 8/136 (5%)
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
S + D + + + + P G ++ V + + +
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---- 261
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510
H V L F+Y K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319
Query: 511 IHFIFSTAVDGKIKAW 526
+I + + D K +
Sbjct: 320 --YIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
+ V + ++ G + +L++ + + QS
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--- 303
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485
V S + + IVT DK V+++
Sbjct: 304 -KESSSVLSCDIS-VDDKY-IVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 25/215 (11%), Positives = 50/215 (23%), Gaps = 22/215 (10%)
Query: 794 WKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGG 853
+ + + D C+ +S + + + + G
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL 913
+ L + P + +S+ K +L
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGMESSNVEVLHVNKPDKYQL 261
Query: 914 KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQF 973
H+ + L F+ VS+G D L W T I V
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQSKESSSV--LSCDI 314
Query: 974 HSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVL 1008
D ++ GS + + +V+
Sbjct: 315 SVDDKYIVT----------GSGDKKATVY---EVI 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 5e-11
Identities = 30/327 (9%), Positives = 88/327 (26%), Gaps = 38/327 (11%)
Query: 349 SVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS 408
+ + P +LL++ DG + ++ + +
Sbjct: 13 YISDIKIIP-SKSLLLITSWDGSL----------------TVYKFDIQAKNVDLLQSLRY 55
Query: 409 SISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQ 468
+ + + + T L + Q+L + G+ + +K
Sbjct: 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
Query: 469 LCIVTCGDDKL--IRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526
+ G ++ R + + + V + N + + +++ +
Sbjct: 116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175
Query: 527 LYDN---VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE----GAL 579
++ + ++C S +G + +++ +
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSK 234
Query: 580 KRTYIGFRKKSAGV--------VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631
+ + R ++F + AG D I W++ + +
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294
Query: 632 LPSLPRLRFNKEGNLLVVTTADQGIKI 658
++ N+L + T+D K
Sbjct: 295 DSV---VKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 446 QSLEI-DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG----RKLFQFEGHEAPV 500
Q ++I A ++D+ P+K L ++ D + V+ L Q ++ P+
Sbjct: 2 QIVQIEQAPKDYISDIKII-PSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 501 YSVCPHQKENIHFIFST 517
++ T
Sbjct: 60 LCCNFIDNTDLQIYVGT 76
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 3e-07
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 35/199 (17%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
+ + + + L+VG + ++ + + L E + +
Sbjct: 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-- 199
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI----------- 450
+ + + + + D S +
Sbjct: 200 -------------ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 451 -DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFE-GHEAPVYSVCPHQ 507
VN + FS +K L G D +I W+L + +K+ F +E V +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 508 KENIHFIFSTAVDGKIKAW 526
+ D K
Sbjct: 305 N----ILCLATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 23/224 (10%), Positives = 57/224 (25%), Gaps = 13/224 (5%)
Query: 880 LAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK---GHQKHITGLAFSTNLNILVSSG 936
+ P +++ I D ++ +Y + L ++ + F N ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 937 SDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKM 996
+ I + + + ++
Sbjct: 76 TVQGEILKVDLIGSPSFQALTN---------NEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQA 1056
R + + ++S +++ + V +S R+ +
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 1057 SPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1100
S V P+E A DG V V + +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.001
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
+ + +I+ + + ++L+ + D L + D K + +Q K P+
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPL--LCCN 63
Query: 973 FHSDQVRLLVN 983
F + +
Sbjct: 64 FIDNTDLQIYV 74
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 15/113 (13%)
Query: 858 LFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV------------- 904
L + +A P++ A D + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 905 --RVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
R + K + + FS L ++GSD + WN T +K K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 33/289 (11%), Positives = 72/289 (24%), Gaps = 22/289 (7%)
Query: 336 LPRAVACTMHQGSSVVSMDFHPFH-HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
+P V T H S V ++ F P L G G++ +W S
Sbjct: 52 VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW-----------TFDKES 100
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
N + + + + +S ++W +G + V +
Sbjct: 101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160
Query: 455 GGVNDLAFSYPNKQL--CIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN-- 510
+ + V V
Sbjct: 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 220
Query: 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ + S + + D P L D + + G D+ +
Sbjct: 221 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG----ADATIR 276
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQ--FDTTRNRILAAGEDNQIKFWDM 617
W+ + + + +++ T RI++ D + F+++
Sbjct: 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 4e-10
Identities = 34/322 (10%), Positives = 88/322 (27%), Gaps = 28/322 (8%)
Query: 348 SSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKD 407
+ + + P + CG + D + +
Sbjct: 18 NFTTHLSYDP-TTNAIAYPCGKSAFV---------------RCLDDGDSKVPPVVQFTGH 61
Query: 408 SSISVSRVAWSP--DGNFIGVAFTKHLIHLYTYQGSND-----LCQSLEIDAHVGGVNDL 460
S V+ V +SP ++ + ++ + + + E G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 461 AFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVD 520
++ + ++LC+V G D + + C ++ + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 521 GKIK---AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR 637
+ + + + + G D I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 638 LRFNKEGNLLVVTTADQG-IKI 658
+ GN +++ + G +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 9e-07
Identities = 22/202 (10%), Positives = 46/202 (22%), Gaps = 7/202 (3%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
W + V V + R ++
Sbjct: 123 WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIH---LYTYQGSNDLCQS 447
+ + + + + + F + + + G +
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKL---FQFEGHEAPVYSVC 504
D + T G D IRVWD++ K + + + V
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
Query: 505 PHQKENIHFIFSTAVDGKIKAW 526
N I S ++DG + +
Sbjct: 303 VVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK 918
F P A D+ A D+TI++++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 919 HITGLAFS---TNLNILVSSGSDAQLIFWN 945
+ T ++S D L F+
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.0 bits (138), Expect = 2e-09
Identities = 31/288 (10%), Positives = 67/288 (23%), Gaps = 19/288 (6%)
Query: 331 WSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKI 390
+ L T H P G G + +WD ++ +
Sbjct: 43 VPVGSLTDTEIYTEHSHQ-TTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
Query: 391 WDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI 450
+ + + + + G L T G+
Sbjct: 101 FSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKEN 510
+ + F P S+ +
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210
Query: 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ VDG D+ V + T DG+++ S D +
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGTKIASAS----ADKTIK 263
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618
WN + +++T + + T+ +++ + I F + +
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 47/335 (14%), Positives = 100/335 (29%), Gaps = 33/335 (9%)
Query: 326 SQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVS 385
SQ A + LPR + V + P + C + V
Sbjct: 4 SQTALFPS--LPR------TARGTAVVLGNTPAGDKIQY--CNGTSVYTVPV-------- 45
Query: 386 KPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC 445
+ I + S + SP G + + ++ + +
Sbjct: 46 -----------GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94
Query: 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCP 505
++ I G V D+++ +K++ V G ++ V+ +A +
Sbjct: 95 KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153
Query: 506 HQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565
+ I S + D + + + + + ++ Y+ DGS S G
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213
Query: 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDNQIKFWDMDNVNML 623
+ G + + S V + + +I +A D IK W++ + +
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273
Query: 624 TSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI 658
+ + +L LV +A+ I
Sbjct: 274 KTIPVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919
F+ + S F D IA D TI+I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 920 -ITGLAFSTNLNILVSSGSDAQLIFWNTD 947
L LVS ++ + F N +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 877 STFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSG 936
+ L P + I +++ V H T S + S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 937 SDAQLIFWNTDTW 949
+ W+T
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 32/237 (13%), Positives = 70/237 (29%), Gaps = 26/237 (10%)
Query: 311 LRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDG 370
L SV + + ++ P V +SV ++ H V G D
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV---VSGSYDN 181
Query: 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVK----DSSISVSRVAWSPDGNFIGV 426
+ +WDV + L + + + D++I + + +
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241
Query: 427 AFTKHLIHLYTYQ------------GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTC 474
+ + + G + S + H ++ + Y + I+
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN--ILVS 299
Query: 475 GDDKLIRVWDLSGRKLFQ--FEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYD 529
G + +++L KL ++SV K + + DG+ + D
Sbjct: 300 GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 1e-06
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDE-VKTKLKGHQ 917
F + + +NI+ G ++ IYN+R + V +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 918 KHITGLAFSTNLNILVSSGSDAQLIFWNTD 947
I + F ++ + D Q D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 9/132 (6%)
Query: 453 HVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENI 511
H+ V + + + +T DDK+IRV+D + + L Q GH+ V+++
Sbjct: 11 HMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--- 64
Query: 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571
+ S + D ++ W ++ + + + S++ H+
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV-- 122
Query: 572 WNESEGALKRTY 583
W + + +
Sbjct: 123 WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 5e-06
Identities = 25/172 (14%), Positives = 46/172 (26%), Gaps = 26/172 (15%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
H S + + F ++ G D I ++D ++ L
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFL-------------------LQ 48
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464
+ V + ++ G + + + + +G L
Sbjct: 49 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV----RCLDIVE 104
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516
IVT D + VW L G E V +EN +F+
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
++N + G +D I++Y+ + +L GH + L ++ ILVS +D + W+
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 946 TDTW 949
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 22/279 (7%), Positives = 54/279 (19%), Gaps = 17/279 (6%)
Query: 342 CTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQ 401
H + + +V G D + +W + + + +
Sbjct: 90 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149
Query: 402 AAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLA 461
G+ V ++ ++ ++
Sbjct: 150 ----------NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199
Query: 462 FSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG 521
+ + D + R G + V
Sbjct: 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSA 259
Query: 522 KIKAWLYDNVGSRVDYDAPGLW--CTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL 579
+ + + + + G ++ +N G L
Sbjct: 260 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG----SENQFNIYNLRSGKL 315
Query: 580 KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618
I V F + + A +D Q +D
Sbjct: 316 VHANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 5e-04
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 910 KTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGET 969
+T L+GH + N +++ D + +++ + L V
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQ----LSGHDGGV--W 57
Query: 970 RVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT 1029
+++ L+ + K C + N + I
Sbjct: 58 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1030 DGSIGVFDADS 1040
D ++ V+
Sbjct: 117 DNTLHVWKLPK 127
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 3e-08
Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 8/221 (3%)
Query: 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
+L V M S+D L+ G +G + + ++ L + + ++
Sbjct: 172 ELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN 229
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
N + + S+ + G ++ SL AH
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 455 GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHF 513
V L+F+ + + + G D +R WD+ + ++ H + + H
Sbjct: 290 SWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347
Query: 514 IFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGS 554
+L S + D C D S
Sbjct: 348 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 4e-06
Identities = 34/321 (10%), Positives = 83/321 (25%), Gaps = 59/321 (18%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
H + S+ + V GDG + +WD L + K + S + +
Sbjct: 13 HDAD-IFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLC-------QSLEIDAHVGGV 457
++ + + + + Y ++ L+ D
Sbjct: 69 LQAIE------RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 458 NDLAFSYPNKQLC---IVTCGDDKLIRVWDL-------------------SGRKLFQFEG 495
L + N +L +V +W +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP--------------- 540
SV ++ I + +G ++ + ++++
Sbjct: 183 PSQFATSVDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 541 -GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSA-GVVQFDT 598
+ S E + + + + + F S + F+
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 599 TRNRILAAGEDNQIKFWDMDN 619
+ + +AG D +++FWD+
Sbjct: 300 SGETLCSAGWDGKLRFWDVKT 320
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 451 DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLF------------QFEGHEA 498
AH + ++ + V+C D ++VWD + H
Sbjct: 11 KAHDADIFSVSAC-NSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 499 PVYSVCPHQKENIHFIFSTAVDGKIKAW 526
V + + +T+ G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFY 94
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 25/215 (11%), Positives = 51/215 (23%), Gaps = 32/215 (14%)
Query: 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQ 972
K H I ++ + VS D L W+ + G V
Sbjct: 10 GKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 973 FHSDQVRLLVNHETQLAIYDGSKMECIRQW-----------------------VPQDVLS 1009
+ + + S + + +
Sbjct: 68 VLQA---IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 1010 SPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY----MSQASPNSSQTVF 1065
++ S + AT G+ ++ + Q + S T
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 1066 PLVVTSHPQEPNQLAVGLTDGSVKVIEPSETERKW 1100
+ E +A G +G+V++ E S +
Sbjct: 185 QFATSVDISERGLIATGFNNGTVQISELSTLRPLY 219
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 0.002
Identities = 31/351 (8%), Positives = 80/351 (22%), Gaps = 14/351 (3%)
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649
A + + ++ D +K WD ++ + + + L +
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAI 72
Query: 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRS 709
+ ++A L + ++ K+ +
Sbjct: 73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132
Query: 710 SPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASK 769
+ + + LT P + +
Sbjct: 133 RLLSHRLVATDVKGTTYIWK------FHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 770 VARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVP 829
+ + G+ + VQ + + + S +
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 830 ENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNI 889
A D ++ ++ + + + L+F+
Sbjct: 247 AIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS-GET 303
Query: 890 IAIGMEDSTIQIYNVRVDEVKTKLKGHQKHI----TGLAFSTNLNILVSSG 936
+ D ++ ++V+ E T L H I LA + + L G
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 6e-08
Identities = 39/356 (10%), Positives = 88/356 (24%), Gaps = 56/356 (15%)
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
H ++V + + DV V K + +P
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGTAMMAP 49
Query: 420 DGNFIGVA----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG 475
D V + I L T + + S + A S K++
Sbjct: 50 DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109
Query: 476 DDKLIRVWDLSGRKLFQFEGHE-APVYSVCPHQKENIHFIFSTAVDGKIKAWLYD----- 529
+L + + +L F + V ++ A DG + D
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169
Query: 530 ----------NVGSRVDYDAPGLWCTTMLYSADGSRLFSC-------------GTSKEGD 566
+ + FS + +
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229
Query: 567 SHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTST 626
+ + G + ++ G N++ +D+ ++ +
Sbjct: 230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAA 288
Query: 627 EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRAS 682
+ + F+K+G+ L + + + N D L ++ I+ + S +
Sbjct: 289 NLDHTYYC---VAFDKKGDKLYLGGTFNDLAVF-NPDTLEKVKNIKLPGGDMSTTT 340
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 9e-08
Identities = 39/379 (10%), Positives = 88/379 (23%), Gaps = 38/379 (10%)
Query: 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPR-LRFNKEGNLLVVTTA 652
++ N + D+ + + S P + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 653 DQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPA 712
G + D + + + S + ++ +R++
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772
+P + + P++ + A+
Sbjct: 120 KPPRL----------------------EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157
Query: 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832
L I + + + R A + Q
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVAL-PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 216
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
+D A + ++ K T + F +
Sbjct: 217 KDDKQDPATADLLYG--------YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
+ + Y+++ ++ +AF + L G+ L +N DT EK
Sbjct: 269 -GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
Query: 953 KSIAIQLPAGKLPVGETRV 971
K+ I+LP G + +V
Sbjct: 327 KN--IKLPGGDMSTTTPQV 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 28/333 (8%), Positives = 79/333 (23%), Gaps = 68/333 (20%)
Query: 839 VALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGMED 896
AL Y++ + + ++ + V + + P P + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 897 STIQIYNVRVDEVK------TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWE 950
I ++ + + + + A S + + ++ + Q + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 951 KRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDV--- 1007
R + + A L R QV L+ + G + + +
Sbjct: 122 PR--LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179
Query: 1008 -LSSPISSAAYSCNSQLIYATFT--------------------------DGSIGVFDADS 1040
L + + + + + D +
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
Query: 1041 LRLRCRI------------APSAYMSQASPNSS-------QTVFPLVVTSHPQEP----- 1076
+ + +Q + + + +
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299
Query: 1077 ----NQLAVGLTDGSVKVIEPSETERKWGVAVP 1105
++L +G T + V P E+ + +P
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/142 (15%), Positives = 37/142 (26%), Gaps = 10/142 (7%)
Query: 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLL 981
G A ++ + L + + KS + P P D
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGT---AMMAPDNRTAY 55
Query: 982 V--NHETQLAIYD---GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVF 1036
V NH + D + + S A S + + +YAT
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 1037 DADSLRLRCRIAPSAYMSQASP 1058
R + +A +A P
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKP 137
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 4e-04
Identities = 33/300 (11%), Positives = 76/300 (25%), Gaps = 22/300 (7%)
Query: 772 RLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPEN 831
N+ G + K ++ + G+ ++ P + P
Sbjct: 53 TAYVLNNHYGDIYGIDLDTCK-NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111
Query: 832 AEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIA 891
+ V + + + + G + + + + S ++A +
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171
Query: 892 IGMEDSTIQI-----------YNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQ 940
G + + + ++ T F + ++
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 941 LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIR 1000
+ + T + L + +LA YD + + I+
Sbjct: 232 YLSVDLKTGKTHTQEF-----ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK 286
Query: 1001 QWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRI-APSAYMSQASPN 1059
L A+ +Y T + VF+ D+L I P MS +P
Sbjct: 287 AAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQ 342
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 7e-08
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 859 FNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD-EVKTKLKGHQ 917
+S PA + +++A G D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 918 KHITGLAFSTNLNILVSSGSDAQLIFWN 945
+ L + T + LVSSG+DA + WN
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (117), Expect = 8e-07
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP 499
G +++ +++ H G+ L + +++ D I W S + H
Sbjct: 1 GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNL 48
Query: 500 VYSVCPHQKENIHFIFS 516
+ S+ + + I
Sbjct: 49 IVSLDNSKAQEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 388 FKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQS 447
++ + + + + + I +Y+ + + ++
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253
Query: 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484
L AH GVN+L + P+ +V+ G D I+ W+
Sbjct: 254 LN--AHKDGVNNLLWETPST---LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 6e-05
Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 26/286 (9%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRER---------LVSKPFKIWDMSN 395
H + ++ +P L+ G DG I W + SK + +S
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 396 CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVG 455
+ I K S +VA + + F V + + + +
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 456 GVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIF 515
N + G+ + A + E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 516 STAVDGKIKA-----WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570
+ R W + + + D+++
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 571 EWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWD 616
++ + K + ++T + ++++G D IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 8e-04
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 907 DEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAI 957
DEV + GH K IT L + L+S D +++ W++ + + S I
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLI 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 8e-08
Identities = 34/291 (11%), Positives = 80/291 (27%), Gaps = 24/291 (8%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERL---------------VSKPFK 389
H + + ++ L +G I WD+ +
Sbjct: 11 HNKA-ITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 390 IWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLE 449
++ +S + S VA +G+A + + S
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 450 IDAHV---GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPH 506
V + +A S + + + + + + H A + SV
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 507 QKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566
+ + + + + + + + + G+ D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL---D 245
Query: 567 SHLVEWNESEGALKRTYIGFRKKSAGV-VQFDTTRNRILAAGEDNQIKFWD 616
+ ++ WN ++ + I + V I++AG+D+ IKFW+
Sbjct: 246 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.8 bits (114), Expect = 2e-06
Identities = 21/159 (13%), Positives = 40/159 (25%), Gaps = 15/159 (9%)
Query: 908 EVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVG 967
+ GH K IT L+ S + L S+ ++ + W+ T +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP----------- 51
Query: 968 ETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT 1027
H+ + + + S + A + L A
Sbjct: 52 ----DVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 1028 FTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFP 1066
DG I V + + +S +
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 146
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 387 PFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQ 446
+ ++N + + V+ V+WSPD + + + ++ +D
Sbjct: 202 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261
Query: 447 SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLS 486
++ + VN + + IV+ G D I+ W++
Sbjct: 262 IIKGAHAMSSVNSVIWLNET---TIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 7e-04
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR--VDEVKTKL 913
T + A DN +A G D+++ ++N+ D
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 914 KGHQKHITGLAFSTNLNILVSSGSDAQLIFWN 945
H N +VS+G D+ + FWN
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 53.3 bits (126), Expect = 9e-08
Identities = 34/367 (9%), Positives = 89/367 (24%), Gaps = 35/367 (9%)
Query: 602 RILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKI-LA 660
++A Q D+ +L E + +R + + + +G + +
Sbjct: 16 DLIAFVSRGQAFIQDVSGTYVLKVPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIY 71
Query: 661 NADGLRALRAIETRAYETSRASTE--------MKVPGSAVVTTITPVLSKAERVDRSSPA 712
+ +A + E + V T + ER +
Sbjct: 72 DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131
Query: 713 RPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772
+ N A K + + E + + ++
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191
Query: 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832
LY S + V ++ + P P + + N
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251
Query: 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAI 892
+ +++++ S +
Sbjct: 252 MYKRSSP-----------------INVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQG 293
Query: 893 GMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKR 952
E + Y+V+ K+ + ++T L S + ++ D ++ + + E
Sbjct: 294 APEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE 349
Query: 953 KSIAIQL 959
+++
Sbjct: 350 RTVETDK 356
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-06
Identities = 24/213 (11%), Positives = 51/213 (23%), Gaps = 13/213 (6%)
Query: 415 VAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVT 473
+SP DG+ I AF + S + + + K I
Sbjct: 8 EDFSPLDGDLI--AFVSR-GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHG 61
Query: 474 CGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGS 533
+ + ++D K +FE + V+++ + + + +
Sbjct: 62 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121
Query: 534 RVDYDAPGL----WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589
+ + A G L T + ++ K
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--KIFAATTENS 179
Query: 590 SAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNM 622
FD + + D +N
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 212
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 19/231 (8%), Positives = 45/231 (19%), Gaps = 46/231 (19%)
Query: 296 MIDYPSSDHEQLKKRLRASQSVDEATYPVPSQQATWSLDDLPRAVACTMHQGSSVVSMDF 355
+ R A + + D+ +S
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 356 HPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS--------------------- 394
L D + K + +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245
Query: 395 ----------------NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTY 438
+ ++ S + S + A K ++ Y
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305
Query: 439 QGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRK 489
+ ++ + DL S +++ ++ DD I + L +
Sbjct: 306 KTR-------KVTEVKNNLTDLRLS-ADRKT-VMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 22/310 (7%), Positives = 66/310 (21%), Gaps = 41/310 (13%)
Query: 346 QGSSVVSMDFHPFHHTLLVVGCGDGE-ITLWDVGLRERLVSKPFKIWDMSN--------- 395
+ + + + G +G+ + ++D + + +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 396 -------------CSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSN 442
I + ++ S + FI F Y
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 443 DLCQSLEIDAHVGG----VNDLAFSYPNKQLCIVTCGDDKLIRVWDLS--------GRKL 490
+E +D A ++ + L D K
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220
Query: 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLY 549
F + ++ ++ + P +
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280
Query: 550 SADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGED 609
+ L++++ + K + ++ R ++ +D
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDLRLSADRKTVMVRKDD 335
Query: 610 NQIKFWDMDN 619
+I + ++
Sbjct: 336 GKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 17/179 (9%), Positives = 53/179 (29%), Gaps = 8/179 (4%)
Query: 867 MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFS 926
+ + + D+ + S + V ++ I + S
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229
Query: 927 TNLNILVSSGSDAQLI-FWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHE 985
N LV ++ + D +++ I + ++ + ++ + V+ E
Sbjct: 230 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP---LESSILIYSVPVHGE 286
Query: 986 TQLAIYDGSKMECIRQWVPQD----VLSSPISSAAYSCNSQLIYATFTDGSIGVFDADS 1040
+ + ++ + + + ++ S + + + DG I F +
Sbjct: 287 FAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.003
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 875 PASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVS 934
P+ F P D ++IA Q + V I + + +
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 935 SGSD--AQLIFWNTDTWEKRK 953
G+ L ++ T + K
Sbjct: 60 HGTREGDFLGIYDYRTGKAEK 80
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.3 bits (121), Expect = 4e-07
Identities = 25/303 (8%), Positives = 62/303 (20%), Gaps = 27/303 (8%)
Query: 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAI 404
G + + P + D+ E + + + AA+
Sbjct: 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAAL 89
Query: 405 VKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSY 464
D + + + + LA++
Sbjct: 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----SRRKAFEAPRQITMLAWAR 144
Query: 465 PNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524
+L G D + + +G + + + ++
Sbjct: 145 DGSKL--YGLGRDLHVMDPE-AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201
Query: 525 AWLYDNVGSRVD----------YDAPGLWCTTMLYSADGSRLFSCGTSKEG------DSH 568
+ D D FS + +
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV 261
Query: 569 LVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEA 628
L ++ + A + S V T + + G + +D + + +
Sbjct: 262 LESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319
Query: 629 EGG 631
G
Sbjct: 320 PGN 322
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 34/356 (9%), Positives = 92/356 (25%), Gaps = 39/356 (10%)
Query: 600 RNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKIL 659
R+ ILA +++ D + + + P+ G + T
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSE---- 56
Query: 660 ANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILN 719
+ T ++ S + + A D + A + +
Sbjct: 57 ------------SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 720 GADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779
+ L D ++ ++ LY
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAW----------ARDGSKLYGLGR 154
Query: 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839
+ G K ++ + + +A + S+G++ T
Sbjct: 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY----------T 204
Query: 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 899
A D +A + ++ ++ + F + +
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVL 262
Query: 900 QIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955
+ +++ + ++ + ST+ + + G+ L ++ +T EK+ +
Sbjct: 263 ESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 34/366 (9%), Positives = 91/366 (24%), Gaps = 63/366 (17%)
Query: 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421
++ ++ + D + D+ + +P G
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVIT-----------------IADAGPTPMVPMVAPGG 45
Query: 422 NFIGVAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD 477
K I L T + + + V + A S K L I
Sbjct: 46 RIAYATVNKSESLVKIDLVTGE-TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVR 104
Query: 478 KLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFST-----AVDGKIKAWLYDNVG 532
+ +++ ++ ++ ++ ++ G+ + G
Sbjct: 105 LELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
Query: 533 SRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL------------- 579
+ V+ W D +++ S + +
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224
Query: 580 -----KRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPS 634
+ R + A G N ++ +D++ + S
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYS 284
Query: 635 LPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVT 694
+ + +G+ + + A + +A+ L + +PG+A ++
Sbjct: 285 ---VNVSTDGSTVWLGGALGDLAAY-DAETLEKKGQV--------------DLPGNASMS 326
Query: 695 TITPVL 700
+ L
Sbjct: 327 LASVRL 332
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.3 bits (111), Expect = 9e-06
Identities = 30/263 (11%), Positives = 72/263 (27%), Gaps = 31/263 (11%)
Query: 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAA 403
+G +V + +HP ++ + + +V + K+ ++ +
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-------ETGKVLLVNYKDIDNLTV 200
Query: 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFS 463
++ ++ W + A L +++ F
Sbjct: 201 TSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260
Query: 464 YPN-KQLCIVTCGDDKLIRVWDLS--------GRKLFQFEGHEAPVYSVCPHQKE-NIHF 513
+P + + D I + +K+ + +G + H K +++
Sbjct: 261 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 320
Query: 514 IFSTAVDGKIKAWLY-------------DNVGSRVDYDAPGLWCTTMLYSADGSRL-FSC 559
+ D +I + + D Y+ G + FS
Sbjct: 321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 380
Query: 560 GTSKEGDSHLVEWNESEGALKRT 582
K S LV ++ LK
Sbjct: 381 WNGKNDSSALVVVDDKTLKLKAV 403
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.2 bits (90), Expect = 0.003
Identities = 22/218 (10%), Positives = 50/218 (22%), Gaps = 27/218 (12%)
Query: 360 HTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419
+ V G+I L D ++ + + +V S
Sbjct: 32 NLFSVTLRDAGQIALVDGDSKKIVKVID--------------------TGYAVHISRMSA 71
Query: 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGD 476
G ++ V I + + EI + + I
Sbjct: 72 SGRYLLVIGRDARIDMIDLWAKEPT-KVAEIKIGIEARSVESSKFKG-YEDRYTIAGAYW 129
Query: 477 DKLIRVWDLSGRK-LFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV 535
+ D + V + H + + I ++ + + + G +
Sbjct: 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET-GKVL 188
Query: 536 DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWN 573
+ + T+ L G + N
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN 226
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.004
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 11/130 (8%)
Query: 828 VPENAEDVVPCVAL-SKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQD 886
V L N V G+++L + + K++ + A
Sbjct: 15 VKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSA-S 72
Query: 887 NNIIAIGMEDSTIQIY------NVRVDEVKTKLKGHQKHITGLAFSTNLNIL-VSSGSDA 939
+ + D+ I + +V E+K + + +
Sbjct: 73 GRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPP 131
Query: 940 QLIFWNTDTW 949
Q + +T
Sbjct: 132 QFAIMDGETL 141
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 28/267 (10%), Positives = 69/267 (25%), Gaps = 29/267 (10%)
Query: 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCS 397
V T+ GS+ + P + V ++++ D + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 398 MMLQAAIVKDSSIS----------------------VSRVAWSPDGNFIGVAFTKHLIHL 435
+ + S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 436 YTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEG 495
+ + ++ + G+ P+ V D I V D +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSR 555
EA + + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 556 LFSCGTSKEGDSHLVEWNESEGALKRT 582
++ + + + + + + T
Sbjct: 258 VY---VALSFCNTVSVIDTATNTITAT 281
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 23/256 (8%), Positives = 57/256 (22%), Gaps = 22/256 (8%)
Query: 335 DLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMS 394
D+ A G V + LL G V ++ +
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSA 165
Query: 395 NCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV 454
+C + A + + S + Q+ A
Sbjct: 166 SCFHIHPGA-------AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQ 218
Query: 455 GGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAP--VYSVCPHQKENIH 512
+ + + G + + + V + +
Sbjct: 219 ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278
Query: 513 FIFS-----TAVDGKIKAWLYDN-VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566
I + + + VG + G ++ + DG+ ++ G
Sbjct: 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA--GT 336
Query: 567 SHLVEWNESEGALKRT 582
L ++ + + +
Sbjct: 337 EVLDIYDAASDQDQSS 352
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 0.001
Identities = 17/161 (10%), Positives = 40/161 (24%), Gaps = 15/161 (9%)
Query: 343 TMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402
+ + L V G+I D+ + + + +
Sbjct: 190 HPEDEFLINHPAYSQKAGRL-VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA----- 243
Query: 403 AIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV------GG 456
+VA+ + I + + + + + +
Sbjct: 244 --DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE 301
Query: 457 VNDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGH 496
++ + S K L DK + + D SG +L
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (92), Expect = 0.002
Identities = 23/197 (11%), Positives = 42/197 (21%), Gaps = 27/197 (13%)
Query: 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421
V G+I L D E + +V S G
Sbjct: 34 FSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASG 73
Query: 422 NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDA---HVGGVNDLAFSYPNKQLCIVTCGDDK 478
++ V +++ + EI + +K I
Sbjct: 74 RYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEGWEDKYA-IAGAYWPP 131
Query: 479 LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGK--IKAWLYDNVGSRVD 536
+ D + + + Y + E + I VD
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191
Query: 537 YDAPGLWCTTMLYSADG 553
Y TT + +
Sbjct: 192 YTDLNNLKTTEISAERF 208
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.003
Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 25/231 (10%)
Query: 458 NDLAFSYPNKQLCIVTCGDDKLIRVWDL-SGRKLFQFEGHEAPVYSVCPHQKENIHFIFS 516
+ + L VT D I + D + + A + ++F
Sbjct: 22 TQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGR--YLFV 78
Query: 517 TAVDGKIKAWLYDNVGSRVDY-----DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571
DGK+ T+ + + + V
Sbjct: 79 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA---YWPPQYVI 135
Query: 572 WNESEGALKRTY-----------IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNV 620
+ K+ + A ++ I+ E +I D ++
Sbjct: 136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
Query: 621 NMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAI 671
N L +TE L + + A+ K++ L AI
Sbjct: 196 NNLKTTEISAE-RFLHDGGLDGSHRYFIT-AANARNKLVVIDTKEGKLVAI 244
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1131 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.5 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.48 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.34 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.07 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.07 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.85 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.83 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.83 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.79 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.5 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.3 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.18 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.97 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.89 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.65 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.59 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.59 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.55 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.55 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.53 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.47 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.47 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.4 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.4 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.36 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.36 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.34 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.31 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.16 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.13 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.0 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.94 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.89 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.88 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.86 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.12 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.27 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.92 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.67 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.27 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 91.1 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.88 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 90.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 87.59 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.32 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 86.97 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-36 Score=334.02 Aligned_cols=294 Identities=14% Similarity=0.185 Sum_probs=252.3
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
..+.+++++|...|+|++|||+|+ +||+|+ ||.|+|||+.+++..... ......+|.+.|.+++
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~~--------------~~~~~~~h~~~I~~v~ 104 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSPV--------------SQLDCLNRDNYIRSCK 104 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSCS--------------EEEECSCTTSBEEEEE
T ss_pred CceEEEECCCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCccccee--------------EEeeecCCCCcEEEEE
Confidence 346677889999999999999998 589987 899999999876544311 1123568999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 495 (1131)
|+|||++|++|+.||+|++||+..... .....+.+|...|.+++|+|++. ++++++.|+.|++|| .+++......+
T Consensus 105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~ 181 (337)
T d1gxra_ 105 LLPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EcCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 999999999999999999999976543 23346788999999999999999 899999999999999 77888888889
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
|...|.+++|++ ++..+++++.|+.+++||+++.+....+. +...|.+++|+|+++++++++. ++.+++||+.
T Consensus 182 ~~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccc
Confidence 999999999964 55799999999999999999887666554 5678999999999999999886 8999999999
Q ss_pred CCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCc
Q 001178 576 EGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQG 655 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~ 655 (1131)
+++... ...|. ..+.+++|+|++++|++++.||.|++||+.+++.+...... ..|.+++|+|++++|++|+.||.
T Consensus 255 ~~~~~~-~~~~~-~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 255 KPDKYQ-LHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SSCEEE-ECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTSC
T ss_pred cccccc-ccccc-cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCCe
Confidence 887654 34444 48999999999999999999999999999999988776543 37999999999999999999999
Q ss_pred EEEEec
Q 001178 656 IKILAN 661 (1131)
Q Consensus 656 i~iw~~ 661 (1131)
|+|||+
T Consensus 330 I~vWdl 335 (337)
T d1gxra_ 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-34 Score=316.18 Aligned_cols=287 Identities=16% Similarity=0.203 Sum_probs=243.6
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.+.+.+++++|+|+. ||.++ ++.|.+||+.+++... ++.+|...|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 4556778999999995 66654 6689999999876654 4779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC--CCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD--DKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~--d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
+|+.||+|+|||+.++.... ...+.+|.++|.+++|+|+++ ++++++. ++.++||+ .+++.+..+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeecccccc-ccccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 99999999999999876543 235788999999999999999 6777764 56799999 788888999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
++|+++.+ ..+++|+.||.|++||+++.+....+..|...|.++.++|+++++++++. ++.|++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99976442 36889999999999999999988899999999999999999999999986 89999999999888777
Q ss_pred Eecc------cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcE
Q 001178 583 YIGF------RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGI 656 (1131)
Q Consensus 583 ~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i 656 (1131)
+... +...|.+++|+|++++|++|+.||.|++||+.+++++..+..+... ....+.+.+++..+++++.||.|
T Consensus 227 ~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~i 305 (311)
T d1nr0a1 227 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFI 305 (311)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCE
T ss_pred ccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCEE
Confidence 6432 2347999999999999999999999999999999999988765432 23344555556789999999999
Q ss_pred EEEecC
Q 001178 657 KILANA 662 (1131)
Q Consensus 657 ~iw~~~ 662 (1131)
++||.+
T Consensus 306 ~~wd~d 311 (311)
T d1nr0a1 306 NFVNPE 311 (311)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 999963
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-34 Score=315.87 Aligned_cols=283 Identities=22% Similarity=0.381 Sum_probs=257.4
Q ss_pred ccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCE
Q 001178 344 MHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNF 423 (1131)
Q Consensus 344 ~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ 423 (1131)
-+|.+.|++++|+|+++ +||||+.||+|+|||+.+++.+. .+.+|...|.+++|+|++.+
T Consensus 14 ~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~~~ 73 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKL 73 (317)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeeccccc
Confidence 35999999999999998 69999999999999999988765 46799999999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 424 IGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 424 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
+++++.++.+.+|+....+.. ..+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (317)
T d1vyhc1 74 LASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148 (317)
T ss_dssp EEEEETTSCCCEEETTSSCEE---ECCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ccccccccccccccccccccc---cccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCccee
Confidence 999999999999998876543 35678999999999999999 799999999999999 888999999999999999
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCC--------------------CEEEEEeec
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADG--------------------SRLFSCGTS 562 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g--------------------~~l~~~~~~ 562 (1131)
+++++ ++.+|++++.|+.|++|++.+......+..+...+.++.++|++ ..+++++.
T Consensus 149 ~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (317)
T d1vyhc1 149 VRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR- 225 (317)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-
T ss_pred eeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC-
Confidence 99865 56899999999999999999999998999899999999998764 45677765
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
++.|++||..+++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|++++|+|
T Consensus 226 ---d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~s~ 299 (317)
T d1vyhc1 226 ---DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHK 299 (317)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECS
T ss_pred ---CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEcC
Confidence 89999999999999999998766 899999999999999999999999999999999999886654 899999999
Q ss_pred CCCEEEEEECCCcEEEEe
Q 001178 643 EGNLLVVTTADQGIKILA 660 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~ 660 (1131)
++++|++|+.||+|++||
T Consensus 300 ~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 300 TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEeCCCeEEEeC
Confidence 999999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-34 Score=317.15 Aligned_cols=305 Identities=15% Similarity=0.297 Sum_probs=262.5
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEE
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAW 526 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 526 (1131)
.+|.||.++|++++|+|+++ +|+||+.|++|+||| .+++.+..+.+|...|.++++++ ++.++++++.++.+.+|
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLW 86 (317)
T ss_dssp CEEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEE
T ss_pred EEEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--ccccccccccccccccc
Confidence 36899999999999999999 899999999999999 88999999999999999999965 55899999999999999
Q ss_pred eCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE
Q 001178 527 LYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 527 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1131)
+.........+..+...+.++.++++++.+++++. ++.+.+||+++++.+..+.++.. .+.+++|++++.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR----DKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASC 161 (317)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccceeeeccCCCceEEeecc----CcceeEeecccceeeeEEccCCC-cceeeecccCCCEEEEE
Confidence 99988888888888899999999999999999986 89999999999999999988766 88999999999999999
Q ss_pred EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccccc
Q 001178 607 GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMK 686 (1131)
Q Consensus 607 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1131)
+.|+.|++|+..+++....+..+.. .+.++.|+|++.....
T Consensus 162 ~~d~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~------------------------------------- 202 (317)
T d1vyhc1 162 SNDQTVRVWVVATKECKAELREHRH--VVECISWAPESSYSSI------------------------------------- 202 (317)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECCSCGGGGG-------------------------------------
T ss_pred eCCCeEEEEeeccceeeEEEecCCC--CceEEEEeecccccee-------------------------------------
Confidence 9999999999999888877765443 5666665553211000
Q ss_pred ccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCC
Q 001178 687 VPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDS 766 (1131)
Q Consensus 687 ~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 766 (1131)
.
T Consensus 203 ----------~--------------------------------------------------------------------- 203 (317)
T d1vyhc1 203 ----------S--------------------------------------------------------------------- 203 (317)
T ss_dssp ----------G---------------------------------------------------------------------
T ss_pred ----------e---------------------------------------------------------------------
Confidence 0
Q ss_pred ccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCC
Q 001178 767 ASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDS 846 (1131)
Q Consensus 767 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 846 (1131)
............++.
T Consensus 204 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 218 (317)
T d1vyhc1 204 -----------------------------------------------------------------EATGSETKKSGKPGP 218 (317)
T ss_dssp -----------------------------------------------------------------GCCSCC-------CC
T ss_pred -----------------------------------------------------------------ccccceeeeeccCCc
Confidence 000000112233566
Q ss_pred EEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE
Q 001178 847 YVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF 925 (1131)
Q Consensus 847 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 925 (1131)
++++++ |+.|++||+.+++++.++.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.++|++++|
T Consensus 219 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 297 (317)
T d1vyhc1 219 FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297 (317)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE
T ss_pred eeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 777777 89999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEE
Q 001178 926 STNLNILVSSGSDAQLIFWN 945 (1131)
Q Consensus 926 s~dg~~l~s~~~Dg~v~lwd 945 (1131)
+|++++|++++.||+|++||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-33 Score=312.33 Aligned_cols=282 Identities=13% Similarity=0.189 Sum_probs=239.2
Q ss_pred CccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC
Q 001178 766 SASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND 845 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg 845 (1131)
|...|.+++|+|+|++|++++ ||.|++||+......... ......+|...|.+++|+|||
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~-------------------~~~~~~~h~~~I~~v~~s~dg 109 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV-------------------SQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------------------EEEECSCTTSBEEEEEECTTS
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee-------------------EEeeecCCCCcEEEEEEcCCC
Confidence 889999999999999999976 899999998653221100 000112588899999999999
Q ss_pred CEEEEEe-CCeEEEEECCC--ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeE
Q 001178 846 SYVMSAG-GGKVSLFNMMN--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITG 922 (1131)
Q Consensus 846 ~~la~~~-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 922 (1131)
++|++++ ||+|++||+.. .+....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|++
T Consensus 110 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 188 (337)
T d1gxra_ 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 9999998 89999999874 456677888999999999999 8999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEEEEeCCCccccee
Q 001178 923 LAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQ 1001 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~ 1001 (1131)
++|++++..+++++.|+.|++||+.+++...... +...+.+++|+|++.+++++ .|+.+++||+.+++....
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 261 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred ccccccccccccccccccccccccccceeecccc-------cccceEEEEEcccccccceeccccccccccccccccccc
Confidence 9999999999999999999999999876543322 23689999999999999986 589999999998876543
Q ss_pred eecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEE
Q 001178 1002 WVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAV 1081 (1131)
Q Consensus 1002 ~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s 1081 (1131)
. .|...|++++|+|+|++|++++.||.|++||+.+++.+..+. +...|. +++|+| ++.+|++
T Consensus 262 -~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----------~~~~v~--~~~~s~-d~~~l~t 323 (337)
T d1gxra_ 262 -H---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------ESSSVL--SCDISV-DDKYIVT 323 (337)
T ss_dssp -C---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSSCEE--EEEECT-TSCEEEE
T ss_pred -c---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-----------CCCCEE--EEEEeC-CCCEEEE
Confidence 2 337899999999999999999999999999999999887664 233343 688999 6789999
Q ss_pred EecCCcEEEEec
Q 001178 1082 GLTDGSVKVIEP 1093 (1131)
Q Consensus 1082 ~~~Dg~v~iW~~ 1093 (1131)
|+.||+|+|||+
T Consensus 324 ~s~D~~I~vWdl 335 (337)
T d1gxra_ 324 GSGDKKATVYEV 335 (337)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEEEE
Confidence 999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-33 Score=321.81 Aligned_cols=307 Identities=18% Similarity=0.280 Sum_probs=239.5
Q ss_pred ceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 339 AVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 339 ~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
.+...++|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+......-.. .............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEEC
Confidence 4456678999999999999998 589987 899999999998876531110000 0000111122355788999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCc
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHE 497 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~ 497 (1131)
|||++|++|+.||+|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| .+.........+
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~- 204 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE- 204 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS-
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccc-
Confidence 999999999999999999999876543 5788999999999999998 799999999999999 555555555544
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe-------cCCCceEEEEEEccCCCEEEEEeecCCCCceEE
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY-------DAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLV 570 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~ 570 (1131)
....++.+.+ .++.+|++++.||.|++|+.++......+ ..|...|.++.|+|++++|++++. ++.|+
T Consensus 205 ~~~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 205 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred cccccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4455555544 46689999999999999999987766543 345678999999999999999986 89999
Q ss_pred EEeCCCCeee------------EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 571 EWNESEGALK------------RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 571 iwd~~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
+||+.++... .....|. ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCS-SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeeccccc-ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 9998765432 2333433 4789999999999999999999999999999999999887654 78877
Q ss_pred E------EcCCCCEEEEEECCCcEEEEecC
Q 001178 639 R------FNKEGNLLVVTTADQGIKILANA 662 (1131)
Q Consensus 639 ~------~sp~~~~l~~~~~dg~i~iw~~~ 662 (1131)
+ |+|++.+|++|+.||+|+||+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6 46789999999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-33 Score=315.22 Aligned_cols=333 Identities=15% Similarity=0.269 Sum_probs=247.1
Q ss_pred EEEeCCCeEEEEEecCCCccce-eeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQ-SLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYS 502 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~-~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~ 502 (1131)
..+..++.+.+|+....+.+.. .....+|.+.|++++|+|||+ +|++|+ |++|+||| .+++.+..+..+......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3466778889999776554321 123347999999999999999 789987 89999999 888888888766543222
Q ss_pred EeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 503 VCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 503 ~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
... + .......+...|.+++|+|+|++|++++. ++.|++||...++.+..
T Consensus 109 ~~~--------~------------------~~~~~~~~~~~V~~l~~s~~~~~l~s~~~----dg~v~i~~~~~~~~~~~ 158 (388)
T d1erja_ 109 PEN--------L------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAE----DRLIRIWDIENRKIVMI 158 (388)
T ss_dssp ------------------------------------CCCCBEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEE
T ss_pred ccc--------c------------------ccccccCCCCCEEEEEECCCCCcceeccc----ccccccccccccccccc
Confidence 110 0 00112346667999999999999999986 89999999999999999
Q ss_pred EecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc-CCCCEEEEEECCCcEEEEec
Q 001178 583 YIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN-KEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 583 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s-p~~~~l~~~~~dg~i~iw~~ 661 (1131)
+.+|.. .+.++++++++..+++++.++.+++||..+.........+.. ...+.++ +++.+|++++.||.|++|+.
T Consensus 159 ~~~h~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 159 LQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred cccccc-cccccccccccccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeec
Confidence 988766 899999999999999999999999999999888777665543 4455554 48899999999999999998
Q ss_pred CCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCC
Q 001178 662 ADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKT 741 (1131)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v 741 (1131)
.++.. ...+. +.
T Consensus 235 ~~~~~-~~~~~-------------------------~~------------------------------------------ 246 (388)
T d1erja_ 235 ETGFL-VERLD-------------------------SE------------------------------------------ 246 (388)
T ss_dssp TTCCE-EEEEC---------------------------------------------------------------------
T ss_pred ccCcc-ceeec-------------------------cc------------------------------------------
Confidence 76521 00000 00
Q ss_pred cceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCC
Q 001178 742 KPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNG 821 (1131)
Q Consensus 742 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~ 821 (1131)
.....
T Consensus 247 ------------------~~~~~--------------------------------------------------------- 251 (388)
T d1erja_ 247 ------------------NESGT--------------------------------------------------------- 251 (388)
T ss_dssp ----------------------C---------------------------------------------------------
T ss_pred ------------------ccccc---------------------------------------------------------
Confidence 00001
Q ss_pred cccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCc------------eeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 822 LLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNF------------KVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 822 ~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~------------~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
+|...|.+++|+|++++|++++ ||.|++||+.++ .+......|...|.+++|+| +++
T Consensus 252 ---------~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~ 321 (388)
T d1erja_ 252 ---------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDE 321 (388)
T ss_dssp ---------CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECG-GGC
T ss_pred ---------CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECC-CCC
Confidence 2444555555555555555554 455555555432 33445567888999999999 899
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEE------ccCCCEEEEEeCCCcEEEEEcC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAF------STNLNILVSSGSDAQLIFWNTD 947 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~------s~dg~~l~s~~~Dg~v~lwd~~ 947 (1131)
+|++|+.||.|++||+.+++++..+++|.+.|+++++ +|++.+||||+.||+|++|+++
T Consensus 322 ~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999999999999999999999999999999975 6789999999999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.3e-32 Score=301.68 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=251.2
Q ss_pred ceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
+..++| +|.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+. .+..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEe
Confidence 345566 4999999999999998 69999999999999999988765 46789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCcc-ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDL-CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEG 495 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~ 495 (1131)
+|+++++++|+.|+.+++|+....... .....+.+|...........+. .+..+..|.....|+ ...........
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 999999999999999999998765432 2334567788877777766654 478888899999999 66666667777
Q ss_pred CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 496 HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+...+....+.+ ...++++++.|+.|++||+++......+..|...|++++|+|++++|++++. ++.|++|+..
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 888888887754 4479999999999999999999999999999999999999999999999986 8999999999
Q ss_pred CCeeeEEEecc-cCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCC
Q 001178 576 EGALKRTYIGF-RKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQ 654 (1131)
Q Consensus 576 ~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg 654 (1131)
.......+... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|++++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence 98887776432 334689999999999999999999999999999999999886654 899999999999999999999
Q ss_pred cEEEEe
Q 001178 655 GIKILA 660 (1131)
Q Consensus 655 ~i~iw~ 660 (1131)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-32 Score=298.67 Aligned_cols=262 Identities=15% Similarity=0.189 Sum_probs=219.7
Q ss_pred CcccccCCCcccceeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceec
Q 001178 327 QQATWSLDDLPRAVACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIV 405 (1131)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1131)
.+.+|..++. ...+.+ +|.+.|++++|||+|+ +||+|+.||+|+|||+.+++.... ..+
T Consensus 39 ~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~g~-~latg~~dg~i~iwd~~~~~~~~~-----------------~~~ 98 (311)
T d1nr0a1 39 SVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTI 98 (311)
T ss_dssp EEEEEETTCS--SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEE
T ss_pred EEEEEECCCC--ceeEEEcCCCCCEEEEEEeCCCC-eEeccccCceEeeeeeeccccccc-----------------ccc
Confidence 3445555443 333333 5999999999999998 599999999999999998765431 136
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 406 KDSSISVSRVAWSPDGNFIGVAFT--KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 406 ~~h~~~V~~~~~spdg~~las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
.+|...|.+++|+|++++|++++. +..++||++++++... .+.+|...|++++|+|+++. ++++|+.|+.|++|
T Consensus 99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~---~l~~h~~~v~~v~~~~~~~~-~l~sgs~d~~i~i~ 174 (311)
T d1nr0a1 99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIF 174 (311)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEE
T ss_pred ccccCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccee-eecccccccccccc
Confidence 689999999999999999999986 4569999999887554 57899999999999999985 68899999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec-------CCCceEEEEEEccCCCE
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD-------APGLWCTTMLYSADGSR 555 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~ 555 (1131)
| .+++....+.+|..+|.+++++| +++++++++.|+.|++||+.+......+. +|...|.+++|+|++++
T Consensus 175 d~~~~~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 175 EGPPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252 (311)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccCc--cccccccccccccccccccccccccccccccccccccccccccccccCCCCCE
Confidence 9 77888899999999999999965 56899999999999999999877665543 35678999999999999
Q ss_pred EEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC
Q 001178 556 LFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 556 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
|++++. |+.|++||.+++++++.+..+.......+.+.++++.+++++.||.|++||++
T Consensus 253 l~tgs~----Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 253 IASASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999986 89999999999999999987665444445566667789999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-32 Score=310.42 Aligned_cols=290 Identities=15% Similarity=0.104 Sum_probs=231.1
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+-++|+|++|||||+ +||+|+.||.|+|||+.+++.... ..+++|.+.|.+++|+|++++|+
T Consensus 6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~ 67 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIV 67 (371)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEE
T ss_pred CCCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEE
Confidence 346899999999998 689999999999999987764321 24779999999999999999999
Q ss_pred EEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce----eEEecCCccCe
Q 001178 426 VAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK----LFQFEGHEAPV 500 (1131)
Q Consensus 426 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~----~~~~~~h~~~v 500 (1131)
+|+.|++|+|||+.++... ....+.+|...|++++|+|+++ .|++|+.|+++++|+ ..... ......|...|
T Consensus 68 s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v 144 (371)
T d1k8kc_ 68 TCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 144 (371)
T ss_dssp EEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeeccccccccccccccccccc
Confidence 9999999999999886533 3345678999999999999999 899999999999999 33332 23456789999
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCc------------------eeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVG------------------SRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+++|+| ++.+|++|+.|+.|++|+..... .......+...|.+++|+|+|++|++++.
T Consensus 145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~- 221 (371)
T d1k8kc_ 145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH- 221 (371)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-
T ss_pred ccccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-
Confidence 9999965 56899999999999999976432 23345667778999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC--CeEEEEE--------------
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN--VNMLTST-------------- 626 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~-------------- 626 (1131)
++.|++||..+++.+..+..|.. ++.+++|+|++.+|++| .|+.+++|.... +......
T Consensus 222 ---d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
T d1k8kc_ 222 ---DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296 (371)
T ss_dssp ---TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred ---CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence 89999999999999999988665 89999999998776654 577776665432 2211100
Q ss_pred -----------------------eccCCCCCcceEEEcCCC----CEEEEEECCCcEEEEecCCC
Q 001178 627 -----------------------EAEGGLPSLPRLRFNKEG----NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 627 -----------------------~~~~~~~~i~~v~~sp~~----~~l~~~~~dg~i~iw~~~~~ 664 (1131)
....|...|+++++.+.+ ..+++++.||.|++||+.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 000134468888887744 46899999999999998654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-31 Score=297.23 Aligned_cols=346 Identities=13% Similarity=0.136 Sum_probs=264.3
Q ss_pred eEEecCCCceE-EEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcE
Q 001178 534 RVDYDAPGLWC-TTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQI 612 (1131)
Q Consensus 534 ~~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 612 (1131)
+..+.+|...| +++ ++++++|++++. |+.|++||..+++++..+.+|.. .|.+++|+|+ ++|++++.|+.|
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 44677887765 554 456889999986 89999999999999999999766 8999999985 689999999999
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
++|+....+..................+++++.++++++.|+.|++|++.+...... ......
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~-~~~~~~---------------- 139 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD-HGEEHD---------------- 139 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------------C----------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc-ccccce----------------
Confidence 999999998887776665544556677889999999999999999999876521111 000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
...
T Consensus 140 -----------------------------------------------------------------------------~~~ 142 (355)
T d1nexb2 140 -----------------------------------------------------------------------------YPL 142 (355)
T ss_dssp -----------------------------------------------------------------------------CCE
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 000
Q ss_pred EEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe
Q 001178 773 LLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG 852 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~ 852 (1131)
....+........... .|...+ ..+.+++++++++.
T Consensus 143 ~~~~~~~~~~~~~~~~------------------------------------------~~~~~v--~~~~~~~~~~~~~~ 178 (355)
T d1nexb2 143 VFHTPEENPYFVGVLR------------------------------------------GHMASV--RTVSGHGNIVVSGS 178 (355)
T ss_dssp EESCTTTCTTEEEEEE------------------------------------------CCSSCE--EEEEEETTEEEEEE
T ss_pred ceeccccccceeeeee------------------------------------------eccccc--cccccccceeeeec
Confidence 0000000000000000 123333 34566788898888
Q ss_pred -CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCE
Q 001178 853 -GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNI 931 (1131)
Q Consensus 853 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 931 (1131)
|+.|++||+.+++.+....++...+.++.|+| ++.++++++.|+.|++||..++..+..+.+|...|++++|+ +++
T Consensus 179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~ 255 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKF 255 (355)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSE
T ss_pred ccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cce
Confidence 89999999999999999999999999999999 89999999999999999999999999999999999999997 469
Q ss_pred EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCC
Q 001178 932 LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSP 1011 (1131)
Q Consensus 932 l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 1011 (1131)
|++++.||.|++||+.+....... +.........+++++.++++++|+.|++||+++++++..... .|..+
T Consensus 256 l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~--~~~~~ 326 (355)
T d1nexb2 256 LVSAAADGSIRGWDANDYSRKFSY-------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL--KDADQ 326 (355)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEE-------ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT--TTCSE
T ss_pred eeeeecccccccccccccceeccc-------ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec--CCCCC
Confidence 999999999999999986542211 121233345678999999999999999999999998864322 23789
Q ss_pred eEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 1012 ISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 1012 v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
|++++|+|+ .++++++.||.++||.+
T Consensus 327 V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 327 IWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999999986 57888899999877654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.4e-32 Score=301.43 Aligned_cols=322 Identities=19% Similarity=0.317 Sum_probs=250.0
Q ss_pred eeccCCCCCE-EEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 403 AIVKDSSISV-SRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 403 ~~~~~h~~~V-~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
.+++||...| +|++ +|+++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 3688998886 5555 568899999999999999999987554 788999999999999864 599999999999
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec----------------------
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---------------------- 538 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------- 538 (1131)
+|+ ...+.......+............+++..+++++.|+.|++||+..........
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence 999 666666666555555555444456677899999999999999988654332111
Q ss_pred -CCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 539 -APGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 539 -~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
.+.. ....+.++++.++++.. ++.+++||..+++.+....++.. .+.++.++++++++++++.|+.|++||.
T Consensus 158 ~~~~~--~v~~~~~~~~~~~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 230 (355)
T d1nexb2 158 RGHMA--SVRTVSGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDL 230 (355)
T ss_dssp ECCSS--CEEEEEEETTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred eeccc--cccccccccceeeeecc----cceeeeeecccccceeeeecccc-ccccccccccceeeecccccceEEeeec
Confidence 1111 12345667888988876 88999999999999988887655 7888999999999999999999999999
Q ss_pred CCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccc
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTIT 697 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 697 (1131)
.++..+..+..|.. .|.++++++ +++++++.||.|++||+.+....
T Consensus 231 ~~~~~~~~~~~h~~--~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------------------------------ 276 (355)
T d1nexb2 231 ENGELMYTLQGHTA--LVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK------------------------------ 276 (355)
T ss_dssp TTCCEEEEECCCSS--CCCEEEECS--SEEEEECTTSEEEEEETTTCCEE------------------------------
T ss_pred cccccccccccccc--ccccccccc--ceeeeeeccccccccccccccee------------------------------
Confidence 99999988876654 789999874 68999999999999997544100
Q ss_pred ccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeec
Q 001178 698 PVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTN 777 (1131)
Q Consensus 698 p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 777 (1131)
T Consensus 277 -------------------------------------------------------------------------------- 276 (355)
T d1nexb2 277 -------------------------------------------------------------------------------- 276 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEE
Q 001178 778 SGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVS 857 (1131)
Q Consensus 778 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~ 857 (1131)
+.. .+.......+++++++++++++||+|+
T Consensus 277 -----~~~---------------------------------------------~~~~~~~~~~~~~~~~~l~~g~d~~i~ 306 (355)
T d1nexb2 277 -----FSY---------------------------------------------HHTNLSAITTFYVSDNILVSGSENQFN 306 (355)
T ss_dssp -----EEE---------------------------------------------ECTTCCCCCEEEECSSEEEEEETTEEE
T ss_pred -----ccc---------------------------------------------ccCCceEEEEEcCCCCEEEEEeCCEEE
Confidence 000 001111123567888999998899999
Q ss_pred EEECCCceeEE-EEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEee
Q 001178 858 LFNMMNFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVR 905 (1131)
Q Consensus 858 vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~ 905 (1131)
|||+++++++. .+.+|...|.+++|+| + .++++++.||.++||-++
T Consensus 307 vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 307 IYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEEE
T ss_pred EEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEEe
Confidence 99999999885 4667889999999998 5 578889999998777553
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.3e-31 Score=294.45 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=249.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+++||.+.|++++|+|++++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++|
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence 588999999999999999999999999999999999987544 6788999999999999999 89999999999999
Q ss_pred e-CC----CceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEE
Q 001178 484 D-LS----GRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFS 558 (1131)
Q Consensus 484 d-~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 558 (1131)
+ .. ......+.+|........... +..+.....|.....|.................+....+.+.+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9 32 234566778887777665432 257888899999999999888888877888888999999999999999
Q ss_pred EeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceE
Q 001178 559 CGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRL 638 (1131)
Q Consensus 559 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v 638 (1131)
++. ++.|++||+++++.+..+.+|.. .|.+++|+|++++|++++.||.|++|++.....+.......+...|.++
T Consensus 202 ~~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred eec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 886 89999999999999999998765 8999999999999999999999999999999988888777666689999
Q ss_pred EEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccc
Q 001178 639 RFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTIL 718 (1131)
Q Consensus 639 ~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l 718 (1131)
+|+|++++|++|+.||.|++||+.++. ....
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~------------------------------------------------ 307 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKAD-RAGV------------------------------------------------ 307 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCC-EEEE------------------------------------------------
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCc-EEEE------------------------------------------------
Confidence 999999999999999999999987651 1110
Q ss_pred cCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEe
Q 001178 719 NGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWK 795 (1131)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~ 795 (1131)
+ .+|...|.+++|+|++.+|++++.||.|++||
T Consensus 308 -----------------------------------------~---~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 308 -----------------------------------------L---AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----------------------------------------E---CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -----------------------------------------E---cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 1 23778899999999999999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.9e-32 Score=293.24 Aligned_cols=288 Identities=11% Similarity=0.120 Sum_probs=223.7
Q ss_pred eeeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+.+++ +|.+.|++++|||||+ +||+|+.||+|+|||+.+++.+.. ...+|...|++++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~ 64 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTT 64 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEee
Confidence 44555 5999999999999998 599999999999999999887642 235799999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCcc
Q 001178 419 PDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEA 498 (1131)
Q Consensus 419 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~ 498 (1131)
|+|+++ +++.|+.+++|+...............|...+.+++|+++++ +++++ .++.+++|+.. +..... ...
T Consensus 65 ~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~-~~~~~~--~~~ 137 (299)
T d1nr0a2 65 SKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG-KLTEVP--ISY 137 (299)
T ss_dssp TTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT-EEEEEE--CSS
T ss_pred ccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc-cccccc--ccc
Confidence 999755 556789999999876543322223456788899999999998 44444 46789999932 222222 334
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE-EecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV-DYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
.+.+++|++ +++++++++.||.|++||+++..... ....|...|.+++|+|+++++++++. ++.|++||..++
T Consensus 138 ~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~ 211 (299)
T d1nr0a2 138 NSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANN 211 (299)
T ss_dssp CEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGT
T ss_pred ccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccc
Confidence 577888864 56899999999999999998766543 44567788999999999999999986 889999999877
Q ss_pred eeeE---EEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC-CCCcceEEEcCCCCEEEEEECC
Q 001178 578 ALKR---TYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG-LPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 578 ~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.... .+.+|. ..|.+++|+|++++|++|+.||.|++||+.++..........+ ...+.++.+ +++++|++++.|
T Consensus 212 ~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D 289 (299)
T d1nr0a2 212 FELAHTNSWTFHT-AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD 289 (299)
T ss_dssp TEESCCCCCCCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred ccccccccccccc-cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence 6543 334444 4899999999999999999999999999988765444333332 334555554 567899999999
Q ss_pred CcEEEEec
Q 001178 654 QGIKILAN 661 (1131)
Q Consensus 654 g~i~iw~~ 661 (1131)
+.|++||+
T Consensus 290 ~~i~iWdl 297 (299)
T d1nr0a2 290 SNIKFWNV 297 (299)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEec
Confidence 99999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-31 Score=296.94 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=238.6
Q ss_pred CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe--eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcC
Q 001178 541 GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA--LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMD 618 (1131)
Q Consensus 541 ~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 618 (1131)
..+|++++|+|||++||+++. ++.|++||..+++ .+..+.+|.. .|.+++|+|++++|++++.|++|++||+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 357999999999999999976 8899999998775 5667778765 89999999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccc
Q 001178 619 NVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITP 698 (1131)
Q Consensus 619 ~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 698 (1131)
++.....+....+...|.+++|+|+++.+++++.|+.+++|++........ .
T Consensus 82 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-~--------------------------- 133 (371)
T d1k8kc_ 82 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-C--------------------------- 133 (371)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-E---------------------------
T ss_pred ccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc-c---------------------------
Confidence 888776666666666899999999999999999999999999765411000 0
Q ss_pred cccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecC
Q 001178 699 VLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNS 778 (1131)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 778 (1131)
.... ..|...|.+++|+|+
T Consensus 134 ----------------------------------------------------------~~~~---~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 134 ----------------------------------------------------------KHIK---KPIRSTVLSLDWHPN 152 (371)
T ss_dssp ----------------------------------------------------------EEEC---TTCCSCEEEEEECTT
T ss_pred ----------------------------------------------------------cccc---ccccccccccccccc
Confidence 0000 236788999999999
Q ss_pred CceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCC--CCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCe
Q 001178 779 GIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPS--NGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGK 855 (1131)
Q Consensus 779 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~ 855 (1131)
+..+++++.|+.+++|+........... ...|+.. .+..+. ....|...|.+++|+|+|++|++++ |+.
T Consensus 153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 224 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGELMF--ESSSSCGWVHGVCFSANGSRVAWVSHDST 224 (371)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCEEE--ECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred ccceeccccCcEEEEEeeccCccccccc------cccccccccceeeee--eccCccCcEEEEEeecccccccccccCCc
Confidence 9999999999999999986543221110 1112211 122222 1225888999999999999999998 899
Q ss_pred EEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc--eeEE----------------------
Q 001178 856 VSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD--EVKT---------------------- 911 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~--~~~~---------------------- 911 (1131)
|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|..... ....
T Consensus 225 i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
T d1k8kc_ 225 VCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302 (371)
T ss_dssp EEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHH
T ss_pred ceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEe
Confidence 99999999999999999999999999999 888888665 777777765432 1100
Q ss_pred -----------------eecccccCeeEEEEccCC----CEEEEEeCCCcEEEEEcCCC
Q 001178 912 -----------------KLKGHQKHITGLAFSTNL----NILVSSGSDAQLIFWNTDTW 949 (1131)
Q Consensus 912 -----------------~~~~h~~~V~~l~~s~dg----~~l~s~~~Dg~v~lwd~~~~ 949 (1131)
....|.+.|+++++.+.+ ..++|+|.||.|++||+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp HCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 001388999999998864 35899999999999999763
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-30 Score=281.92 Aligned_cols=296 Identities=16% Similarity=0.183 Sum_probs=222.5
Q ss_pred CeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccc
Q 001178 620 VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPV 699 (1131)
Q Consensus 620 ~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 699 (1131)
|+..+.+.+|. ..|++++|+|++++|++|+.||.|++||+.++.. .+.+
T Consensus 2 g~~~~~~~GH~--~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~---------------------------- 50 (299)
T d1nr0a2 2 GSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVF---------------------------- 50 (299)
T ss_dssp TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECS----------------------------
T ss_pred CccceEcCCCC--CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEE----------------------------
Confidence 45566666554 4899999999999999999999999999876521 1000
Q ss_pred ccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCC
Q 001178 700 LSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSG 779 (1131)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 779 (1131)
...|...|.+++|+|+|
T Consensus 51 ---------------------------------------------------------------~~~h~~~v~~v~~~~~g 67 (299)
T d1nr0a2 51 ---------------------------------------------------------------PDVHATMITGIKTTSKG 67 (299)
T ss_dssp ---------------------------------------------------------------SCSCSSCEEEEEECTTS
T ss_pred ---------------------------------------------------------------cCCCCCcEEEEEeeccc
Confidence 02277889999999998
Q ss_pred ceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEE
Q 001178 780 IGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLF 859 (1131)
Q Consensus 780 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vw 859 (1131)
. +++++.|+.+++|+.......... .....+...+.+++++++|++++++.++.+++|
T Consensus 68 ~-~~~~~~d~~v~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~ 125 (299)
T d1nr0a2 68 D-LFTVSWDDHLKVVPAGGSGVDSSK---------------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125 (299)
T ss_dssp C-EEEEETTTEEEEECSSSSSSCTTS---------------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred e-eecccceeeEEEeccCCccccccc---------------------ccccccccccccccccccccccccccccccccc
Confidence 6 566778999999986543221110 011135678899999999999999999999999
Q ss_pred ECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEE-eecccccCeeEEEEccCCCEEEEEeCC
Q 001178 860 NMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKT-KLKGHQKHITGLAFSTNLNILVSSGSD 938 (1131)
Q Consensus 860 d~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~s~~~D 938 (1131)
+... ..... ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|
T Consensus 126 ~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 200 (299)
T d1nr0a2 126 SHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 200 (299)
T ss_dssp ETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred cccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9543 22222 345688999999 89999999999999999999887654 456799999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEc
Q 001178 939 AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYS 1018 (1131)
Q Consensus 939 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s 1018 (1131)
+.|++||+.++..... ...+ ..|...|++++|+
T Consensus 201 ~~i~~~~~~~~~~~~~--------------------------------------------~~~~---~~h~~~v~~l~~s 233 (299)
T d1nr0a2 201 RKVIPYSVANNFELAH--------------------------------------------TNSW---TFHTAKVACVSWS 233 (299)
T ss_dssp SCEEEEEGGGTTEESC--------------------------------------------CCCC---CCCSSCEEEEEEC
T ss_pred cccccccccccccccc--------------------------------------------cccc---ccccccccccccc
Confidence 9999999987432110 0111 2237799999999
Q ss_pred cCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1019 CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1019 ~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
|++++|++|+.||.|++||+.++.....+.... .+...+ ...+.+ ++.+|++|+.||+|++||++
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~v---~~~~~~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA-------HAMSSV---NSVIWL-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTS-------STTSCE---EEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred ccccceEEEcCCCEEEEEECCCCCcceEEEecC-------CCCCcE---EEEEEC-CCCEEEEEeCCCEEEEEecc
Confidence 999999999999999999999876544333211 012223 333444 34699999999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=7.2e-30 Score=283.41 Aligned_cols=319 Identities=18% Similarity=0.297 Sum_probs=252.2
Q ss_pred eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEE
Q 001178 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK 524 (1131)
Q Consensus 446 ~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 524 (1131)
....++||.+.|.+ +++++|+ +|+||+.|++|+||| .+++++.++.+|.+.|.+++|++ .+|++++.|+.++
T Consensus 8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~ 80 (342)
T d2ovrb2 8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK 80 (342)
T ss_dssp CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence 44478999999865 4677888 899999999999999 89999999999999999999964 4899999999999
Q ss_pred EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE
Q 001178 525 AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL 604 (1131)
Q Consensus 525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 604 (1131)
+|+................+...... ...++.+.. ++.+.+|+..+++....+..... ....+.+....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 151 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVV 151 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEE
T ss_pred ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeecccc---cceeeccccceee
Confidence 99998887777766666666555444 345555554 88999999999988877765433 2233445667899
Q ss_pred EEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccc
Q 001178 605 AAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTE 684 (1131)
Q Consensus 605 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1131)
+++.|+.|++||......+..+..+. .....+++++.++++++.||.|++||+..+. ...
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~--------------- 211 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIH--------------- 211 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEE---------------
T ss_pred eecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eee---------------
Confidence 99999999999999998888876553 3555666788999999999999999975541 000
Q ss_pred ccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCC
Q 001178 685 MKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764 (1131)
Q Consensus 685 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 764 (1131)
T Consensus 212 -------------------------------------------------------------------------------- 211 (342)
T d2ovrb2 212 -------------------------------------------------------------------------------- 211 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
.+ ..|...+.+++++
T Consensus 212 ----------------------------~~-----------------------------------~~~~~~v~~~~~~-- 226 (342)
T d2ovrb2 212 ----------------------------TL-----------------------------------TGHQSLTSGMELK-- 226 (342)
T ss_dssp ----------------------------EE-----------------------------------CCCCSCEEEEEEE--
T ss_pred ----------------------------Ee-----------------------------------cccccceeEEecC--
Confidence 00 0245556566554
Q ss_pred CCEEEEEe-CCeEEEEECCCceeEEEEeC---CCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec-----c
Q 001178 845 DSYVMSAG-GGKVSLFNMMNFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK-----G 915 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~-----~ 915 (1131)
+++|++++ |+.|++||+.+.+....+.. |...+.++.++ +.++++|+.||+|++||+.+++++..+. +
T Consensus 227 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~ 303 (342)
T d2ovrb2 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC
Confidence 46888888 89999999998888887765 34556666664 4699999999999999999999887763 6
Q ss_pred cccCeeEEEEccCCCEEEEEeCCCc----EEEEEcCC
Q 001178 916 HQKHITGLAFSTNLNILVSSGSDAQ----LIFWNTDT 948 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~Dg~----v~lwd~~~ 948 (1131)
|.+.|++++|+|++.+|++|+.||+ |++||++.
T Consensus 304 ~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 8889999999999999999999986 99999874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.4e-29 Score=275.17 Aligned_cols=279 Identities=18% Similarity=0.280 Sum_probs=220.5
Q ss_pred eeec-cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 341 ACTM-HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 341 ~~~~-~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
.+++ +|.+.|.+ +++++|+ +||||+.||+|+|||+.+++++. .+.+|.+.|.+++|+|
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~~~~h~~~V~~v~~~~ 67 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMRD 67 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEET
T ss_pred CEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCCEEEEEeCC
Confidence 3444 59999876 4777887 59999999999999999998765 4779999999999997
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 420 DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 420 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
+ +|++|+.|+++++|+........ ....+...+....+.+ . .++.+..|+.+.+|+ .+++....+..+..
T Consensus 68 ~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 138 (342)
T d2ovrb2 68 N--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVA 138 (342)
T ss_dssp T--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSS
T ss_pred C--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccc
Confidence 5 99999999999999998765332 3344555566555543 3 578889999999999 77777777665555
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCe
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGA 578 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~ 578 (1131)
...... .....+++++.|+.|++||.........+..+...+.. +.+++.++++++. ++.|++||++.++
T Consensus 139 ~~~~~~----~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~~~~ 208 (342)
T d2ovrb2 139 AVRCVQ----YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVETGN 208 (342)
T ss_dssp CEEEEE----ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETTTCC
T ss_pred cceeec----cccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeC----CCeEEEeecccce
Confidence 444433 23357889999999999999988888888777765554 4557889999986 8999999999999
Q ss_pred eeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccC-CCCCcceEEEcCCCCEEEEEECCCcEE
Q 001178 579 LKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEG-GLPSLPRLRFNKEGNLLVVTTADQGIK 657 (1131)
Q Consensus 579 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~v~~sp~~~~l~~~~~dg~i~ 657 (1131)
.+..+.+|.. .+.+++++ ++++++++.||.|++||....+....+..+. +...+.++.+ +++++++++.||.|+
T Consensus 209 ~~~~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 209 CIHTLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVK 283 (342)
T ss_dssp EEEEECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEE
T ss_pred eeeEeccccc-ceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEE
Confidence 9999988765 67777665 5799999999999999999988887776543 3334444444 567999999999999
Q ss_pred EEecCCC
Q 001178 658 ILANADG 664 (1131)
Q Consensus 658 iw~~~~~ 664 (1131)
+||+.++
T Consensus 284 iwd~~tg 290 (342)
T d2ovrb2 284 LWDLKTG 290 (342)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9999876
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.8e-30 Score=280.32 Aligned_cols=289 Identities=14% Similarity=0.235 Sum_probs=223.9
Q ss_pred cEEEEEEecCCCcEEEEEcCC-CeEEEEECCCCcccccccceeecccccccceeceeccCC-CCCEEEEEEcC--CCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGD-GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDS-SISVSRVAWSP--DGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~sp--dg~~l 424 (1131)
.+++++|+|+|+. ||.++.+ ..|+.||....+... ...+.+| ...|++++|+| +|++|
T Consensus 19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~l 80 (325)
T d1pgua1 19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQYL 80 (325)
T ss_dssp CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCEE
Confidence 5689999999985 6655443 345566654332221 0134566 57899999998 67899
Q ss_pred EEEeCCCeEEEEEecCCCcccee-----eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCcc
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQS-----LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEA 498 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~-----~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~ 498 (1131)
|+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+ .+++.+..+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 99999999999999876544321 2346788999999999999953333445688899999 88999999999999
Q ss_pred CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec---CCCceEEEEEEccC-CCEEEEEeecCCCCceEEEEeC
Q 001178 499 PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD---APGLWCTTMLYSAD-GSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 499 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
.|.+++|++..+ ..+++++.|+.+++||....+...... .+...|.+++|+|+ +.++++++. ++.|++||.
T Consensus 161 ~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~ 235 (325)
T d1pgua1 161 RINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 235 (325)
T ss_dssp CEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred cccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence 999999976543 467889999999999998776655443 45567999999997 678888876 899999999
Q ss_pred CCCeeeEEEecccCCceEEEEEe---CCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCC-CCEEEEE
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFD---TTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKE-GNLLVVT 650 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~-~~~l~~~ 650 (1131)
++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|+|||+.+++.+..+..+.+...+..+++.+. +.+++++
T Consensus 236 ~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 314 (325)
T d1pgua1 236 KSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314 (325)
T ss_dssp TTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred cccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEE
Confidence 99999999987665 44443343 6889999999999999999999999999887776444555555432 3578999
Q ss_pred ECCCcEEEEec
Q 001178 651 TADQGIKILAN 661 (1131)
Q Consensus 651 ~~dg~i~iw~~ 661 (1131)
+.||.|++||+
T Consensus 315 s~dg~i~vwdl 325 (325)
T d1pgua1 315 SLDGTLNFYEL 325 (325)
T ss_dssp ETTSCEEEEET
T ss_pred ECCCEEEEEEC
Confidence 99999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-28 Score=270.33 Aligned_cols=290 Identities=14% Similarity=0.164 Sum_probs=218.5
Q ss_pred CccceEEEEeecCCceEEEeeecc-eeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecC-
Q 001178 766 SASKVARLLYTNSGIGILALWSNG-VQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSK- 843 (1131)
Q Consensus 766 ~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~- 843 (1131)
....+.+++|+|+|..++.++.+. .++.|+....... ....+.+.+...|++++|+|
T Consensus 16 ~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~gh~~~~v~~v~fsP~ 74 (325)
T d1pgua1 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP---------------------PVVQFTGHGSSVVTTVKFSPI 74 (325)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC---------------------SEEEECTTTTSCEEEEEECSS
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc---------------------ceEEEeCCCCCCEEEEEEeeC
Confidence 344667899999999998876543 3444442211110 00012223467899999997
Q ss_pred -CCCEEEEEe-CCeEEEEECCCcee--------EEEEeCCCCCeeEEEEeCCCCcEEEEEeC--CCcEEEEEeecceeEE
Q 001178 844 -NDSYVMSAG-GGKVSLFNMMNFKV--------MTTFMSPPPASTFLAFHPQDNNIIAIGME--DSTIQIYNVRVDEVKT 911 (1131)
Q Consensus 844 -dg~~la~~~-dg~i~vwd~~~~~~--------~~~~~~~~~~i~~l~~s~~~~~~la~g~~--dg~I~iwd~~~~~~~~ 911 (1131)
+|++|++|+ ||+|+|||+..++. ...+..|.++|.+++|++ ++++|++++. ++.+++|+.++++++.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 89999999875432 233557888999999999 7888777654 6789999999999999
Q ss_pred eecccccCeeEEEEccCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCC-CcEEEEE-eCCeE
Q 001178 912 KLKGHQKHITGLAFSTNLNI-LVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSD-QVRLLVN-HETQL 988 (1131)
Q Consensus 912 ~~~~h~~~V~~l~~s~dg~~-l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~-~d~~i 988 (1131)
.+.+|...|++++|+|++.+ +++++.|+.+++||....+...... ....+...+.+++|+|+ +.+++++ .|+.|
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i 230 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDRKI 230 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccceecc---cccCCCCccEEeeeccccceeccccccccce
Confidence 99999999999999999875 7789999999999998765433221 12233467999999997 5677765 59999
Q ss_pred EEEeCCCcccceeeecCCCCCCCeEEEEEc---cCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccc
Q 001178 989 AIYDGSKMECIRQWVPQDVLSSPISSAAYS---CNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVF 1065 (1131)
Q Consensus 989 ~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s---~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1065 (1131)
++||+.+++.+..+..| ..++.++.|+ +||++|++++.|+.|+|||+++++.+..+..+. +...+.
T Consensus 231 ~iwd~~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--------~~~~~~ 299 (325)
T d1pgua1 231 SCFDGKSGEFLKYIEDD---QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK--------QQLGNQ 299 (325)
T ss_dssp EEEETTTCCEEEECCBT---TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--------TCGGGC
T ss_pred eeeeecccccccccccc---ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC--------CcccCe
Confidence 99999999999988776 4455444444 689999999999999999999999888876544 222234
Q ss_pred cEEEEEcCCCCCeEEEEecCCcEEEEec
Q 001178 1066 PLVVTSHPQEPNQLAVGLTDGSVKVIEP 1093 (1131)
Q Consensus 1066 ~~~v~~~p~~~~~l~s~~~Dg~v~iW~~ 1093 (1131)
.+.+.|.+ +.+|++|+.||+|++||+
T Consensus 300 ~~~~~~~~--~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 300 QVGVVATG--NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred EEEEEECC--CCEEEEEECCCEEEEEEC
Confidence 44555544 458999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1e-25 Score=243.26 Aligned_cols=268 Identities=22% Similarity=0.309 Sum_probs=214.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
+|...|+|++| ||+ +||+|+.||+|+|||+.+++.+. ++.+|.+.|.+++| ++++|
T Consensus 13 ~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--cccee
Confidence 48889999754 787 59999999999999999988765 57899999999887 67899
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCc---eeEEecCCccCe
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGR---KLFQFEGHEAPV 500 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~---~~~~~~~h~~~v 500 (1131)
++|+.|+.|++|++..+.... ....+. .....+.+... .++++..++.+++|| .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLN---TLIHHC--EAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCC--SCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ecccccccccccccccccccc---cccccc--ccccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 999999999999999876443 222222 23334555555 689999999999999 4333 345567888888
Q ss_pred EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 501 YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 501 ~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
..+.+.. ..+++++.|+.|++||+++.+....+..+...+..+.++ +.++++++. ++.|++||+++++.+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceee
Confidence 8887643 578899999999999999999888888888888777665 568888876 899999999999999
Q ss_pred EEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCC---------CeEEEEEeccCCCCCcceEEEcCCCCEEEEEE
Q 001178 581 RTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDN---------VNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~ 651 (1131)
..+.++.. .+. .+++++.+|++++.||.|++||+.. ...+..+..|. ..|.+++|+ +.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--EFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--SSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--CCEEEEEe
Confidence 88887654 454 4567889999999999999999743 23556666554 479999995 56899999
Q ss_pred CCCcEEEEe
Q 001178 652 ADQGIKILA 660 (1131)
Q Consensus 652 ~dg~i~iw~ 660 (1131)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.1e-26 Score=246.23 Aligned_cols=268 Identities=12% Similarity=0.157 Sum_probs=208.1
Q ss_pred ceeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE
Q 001178 339 AVACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW 417 (1131)
Q Consensus 339 ~~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 417 (1131)
++++++. |..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 4566765 999999999987 789999999999998753 2378999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC
Q 001178 418 SPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH 496 (1131)
Q Consensus 418 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h 496 (1131)
++++ .+++++.|++|++|++...+ +...+..+++++++. .+++++ ++.+.+|+ .+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeecccc
Confidence 9765 57889999999999986522 233577889999887 555554 55688888 788887777643
Q ss_pred ccCeEEEeecccCCccEEEEEecC-CeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVD-GKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNE 574 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~ 574 (1131)
..+.++. +. +..+++++.| +.+++|++........... +...+++++|+|++.+|++++. ++.|++||.
T Consensus 121 -~~~~~~~--~~--~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVS--LS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEE--EC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeee--cc--CcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 4455443 33 3466666655 5799999876665555443 5668999999999999999986 899999999
Q ss_pred CCCeeeEEEecccCCceEEEEEeCC----------CCEEEEEEcCCcEEEEEcCC-CeEEEEEeccCCCCCcceEEEcCC
Q 001178 575 SEGALKRTYIGFRKKSAGVVQFDTT----------RNRILAAGEDNQIKFWDMDN-VNMLTSTEAEGGLPSLPRLRFNKE 643 (1131)
Q Consensus 575 ~~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~v~~sp~ 643 (1131)
.+++........+...+.+++|+|. +.++++|+.|+.|++||+.+ ++.+..+..| ...|++++|+|+
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~~ 269 (287)
T d1pgua2 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWETP 269 (287)
T ss_dssp TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEET
T ss_pred cccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEECCC
Confidence 9988765433334458999999875 46899999999999999977 4455555444 448999999998
Q ss_pred CCEEEEEECCCcEEEEec
Q 001178 644 GNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 644 ~~~l~~~~~dg~i~iw~~ 661 (1131)
+ .+++++.|+.|++|++
T Consensus 270 ~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 270 S-TLVSSGADACIKRWNV 286 (287)
T ss_dssp T-EEEEEETTSCEEEEEE
T ss_pred C-EEEEEECCCeEEEEEE
Confidence 6 6889999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=4.3e-26 Score=259.80 Aligned_cols=366 Identities=11% Similarity=0.037 Sum_probs=263.7
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGS 441 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~ 441 (1131)
++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|.+||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 568899999999999999998763 3344 36999999999999999999999999999887
Q ss_pred Ccc--ceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEe
Q 001178 442 NDL--CQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTA 518 (1131)
Q Consensus 442 ~~~--~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 518 (1131)
+.. .......+|.+.+.+.+|+|||++ ++++++.+++|++|| .+++.+..+..|...+....+.+.
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------- 162 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------- 162 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC----------
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC----------
Confidence 642 222223457777888889999995 468899999999999 889998888877665544443322
Q ss_pred cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 519 VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
.....+.++|+|..++.... .++.|.+||..+++.........+.....++|+|
T Consensus 163 -----------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 163 -----------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp -----------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred -----------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 12445778999988766543 2789999999887765544433455688899999
Q ss_pred CCCEEEEEEc-CCcEEEEEcCCCeEEEEEeccC---CCCCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhhhhc
Q 001178 599 TRNRILAAGE-DNQIKFWDMDNVNMLTSTEAEG---GLPSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIET 673 (1131)
Q Consensus 599 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 673 (1131)
+|+++++++. ++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+.....
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-------- 288 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-------- 288 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc--------
Confidence 9998887764 5689999999998887765432 111223333333343333332 26667777643220
Q ss_pred cccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCc
Q 001178 674 RAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPL 753 (1131)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~ 753 (1131)
T Consensus 289 -------------------------------------------------------------------------------- 288 (432)
T d1qksa2 289 -------------------------------------------------------------------------------- 288 (432)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCC
Q 001178 754 QCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAE 833 (1131)
Q Consensus 754 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 833 (1131)
...+...+...++++++..++++..+...++|...... .+.
T Consensus 289 ---------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------------------------------~~~ 329 (432)
T d1qksa2 289 ---------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------------------------------PEA 329 (432)
T ss_dssp ---------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------------------------------SSH
T ss_pred ---------ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------------------------------CCC
Confidence 01145567778888999888888888888888643210 122
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEe-----CCCcEEEEEeecc
Q 001178 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGM-----EDSTIQIYNVRVD 907 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-----~dg~I~iwd~~~~ 907 (1131)
....++++ ||++.+++++ |+++++|++.++..+ ..|...+.+++||| ||++++++. .+|.|.|||..++
T Consensus 330 ~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 330 EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CeeeEEEE-EechhhcccccCCceEeccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 23334555 8999999998 899999998765433 35667899999999 777775553 4688999999999
Q ss_pred eeEEeeccc
Q 001178 908 EVKTKLKGH 916 (1131)
Q Consensus 908 ~~~~~~~~h 916 (1131)
++...+++.
T Consensus 405 k~~~~i~~~ 413 (432)
T d1qksa2 405 ELKHVIKDE 413 (432)
T ss_dssp EEEEEECCT
T ss_pred eEEeEecCC
Confidence 998888764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.4e-26 Score=253.18 Aligned_cols=291 Identities=11% Similarity=0.090 Sum_probs=208.8
Q ss_pred eeeecc-CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEc
Q 001178 340 VACTMH-QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWS 418 (1131)
Q Consensus 340 ~~~~~~-h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 418 (1131)
+++..+ |.+.|++|+|||+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEe
Confidence 344444 999999999999998 699999999999999987654321 01233799999999999
Q ss_pred CCC-CEEEEEeCCCeEEEEEecCCCccceeeeeecC-cCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCce----eE
Q 001178 419 PDG-NFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAH-VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRK----LF 491 (1131)
Q Consensus 419 pdg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~----~~ 491 (1131)
|++ .+|++|+.|++|++|++..+.... ....+ ........+.+++. .+++++.|+++++|| ..+.. ..
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~ 140 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred CCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeeec
Confidence 964 589999999999999998876543 22333 33445555666666 799999999999999 33222 22
Q ss_pred EecCCcc--CeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEE-ccCCCEEEEEeecCCC
Q 001178 492 QFEGHEA--PVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLY-SADGSRLFSCGTSKEG 565 (1131)
Q Consensus 492 ~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~-s~~g~~l~~~~~~~~~ 565 (1131)
....+.. ......+ ...+..+++++.|+.|++|++....... ........+.+..+ ..++..+++++.
T Consensus 141 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 214 (342)
T d1yfqa_ 141 NLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---- 214 (342)
T ss_dssp ESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----
T ss_pred ccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----
Confidence 2333322 2233333 3344789999999999999998765433 22333334555554 456777888776
Q ss_pred CceEEEEeCCCCeee------EEEe--------cccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCC
Q 001178 566 DSHLVEWNESEGALK------RTYI--------GFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGG 631 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~------~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 631 (1131)
++.+.+|+....... ..+. ..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus 215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~- 293 (342)
T d1yfqa_ 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN- 293 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-
T ss_pred CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-
Confidence 889999987543211 1111 1122368899999999999999999999999999999888765432
Q ss_pred CCCcceEEEcCCCCEEEEEECCCcEEEEec
Q 001178 632 LPSLPRLRFNKEGNLLVVTTADQGIKILAN 661 (1131)
Q Consensus 632 ~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~ 661 (1131)
....++|+|+++++++++.|+.+++|..
T Consensus 294 --~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 294 --EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred --CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 4667889999999999999988777754
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.4e-26 Score=244.68 Aligned_cols=279 Identities=12% Similarity=0.110 Sum_probs=213.9
Q ss_pred eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEE
Q 001178 446 QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKA 525 (1131)
Q Consensus 446 ~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 525 (1131)
...++.||.++|++++|+| |+||+.||+|++||... ...+|...|.++++.+. ..+++++.|+++++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~~ 71 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSKA---QEYSSISWDDTLKV 71 (287)
T ss_dssp EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTE----EECCCCSCEEEEECCST---TCCEEEETTTEEEE
T ss_pred eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCC----CCCCCCCCEEEEEecCC---CeEEEEeecccccc
Confidence 3457899999999999975 79999999999999432 23589999999998542 46899999999999
Q ss_pred EeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEE
Q 001178 526 WLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILA 605 (1131)
Q Consensus 526 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 605 (1131)
|++.... ....+..+.+.+++..++++. +..+.+|+..+++.+..+.... ...++++++..+++
T Consensus 72 w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v 135 (287)
T d1pgua2 72 NGITKHE-------FGSQPKVASANNDGFTAVLTN-----DDDLLILQSFTGDIIKSVRLNS----PGSAVSLSQNYVAV 135 (287)
T ss_dssp TTEEEEE-------CSSCEEEEEECSSSEEEEEET-----TSEEEEEETTTCCEEEEEECSS----CEEEEEECSSEEEE
T ss_pred ccccccc-------cccceeeeeeccCCceEEEee-----cccceeeeccceeeeeeccccc----eeeeeeccCcceee
Confidence 9875321 234577888999998888775 6678999999998888776432 23567778888888
Q ss_pred EEcCC-cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhcccccccccccc
Q 001178 606 AGEDN-QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTE 684 (1131)
Q Consensus 606 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1131)
++.++ .+++|++...+....+.. .+...+++++|+|++.+|++|+.||.|++||+.++......
T Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------------- 200 (287)
T d1pgua2 136 GLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-------------- 200 (287)
T ss_dssp EETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC--------------
T ss_pred eccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeeccccccccc--------------
Confidence 88765 799999977665554433 23347999999999999999999999999998765210000
Q ss_pred ccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCC
Q 001178 685 MKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPEST 764 (1131)
Q Consensus 685 ~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~ 764 (1131)
..
T Consensus 201 ------------------------------------------------------------------------------~~ 202 (287)
T d1pgua2 201 ------------------------------------------------------------------------------WA 202 (287)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 02
Q ss_pred CCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCC
Q 001178 765 DSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKN 844 (1131)
Q Consensus 765 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~d 844 (1131)
.|...|.+++|+|.+... ..+.++
T Consensus 203 ~h~~~v~~~~~~p~~~~~--------------------------------------------------------~~~~~~ 226 (287)
T d1pgua2 203 FRTSKINAISWKPAEKGA--------------------------------------------------------NEEEIE 226 (287)
T ss_dssp CCSSCEEEEEECCCC--------------------------------------------------------------CCS
T ss_pred ccccccceeeeccccccc--------------------------------------------------------ccccCC
Confidence 266778888887765421 234467
Q ss_pred CCEEEEEe-CCeEEEEECCC-ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEe
Q 001178 845 DSYVMSAG-GGKVSLFNMMN-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNV 904 (1131)
Q Consensus 845 g~~la~~~-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~ 904 (1131)
+.++++|+ |++|+|||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 78999998 89999999976 566777889999999999999 66 4788999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1e-25 Score=255.11 Aligned_cols=243 Identities=16% Similarity=0.238 Sum_probs=164.9
Q ss_pred cceEEEEeecC-----CceEEEeeecceeeEEeecCCCCCCCCccc-eeeeceeecCCCCcccccCCCCCCCCCeeEEEe
Q 001178 768 SKVARLLYTNS-----GIGILALWSNGVQKLWKWNRTEQNPSGKAT-AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVAL 841 (1131)
Q Consensus 768 ~~i~~l~~s~~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~ 841 (1131)
..+..+++.++ +.++++++.||.+++|++............ ......+. ........+...+.+++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~ 192 (393)
T d1sq9a_ 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ-------GTVESPMTPSQFATSVDI 192 (393)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE-------EEECCSSSSCCCCCEEEE
T ss_pred CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecc-------cceecccCCCCcEEEEEE
Confidence 34445555544 467888899999999998653221000000 00000000 000111135667899999
Q ss_pred cCCCCEEEEEe-CCeEEEEECCCceeEEEEe------CCCCCeeEEEEeCCCCcEEEEEeCCCc---EEEEEeecceeEE
Q 001178 842 SKNDSYVMSAG-GGKVSLFNMMNFKVMTTFM------SPPPASTFLAFHPQDNNIIAIGMEDST---IQIYNVRVDEVKT 911 (1131)
Q Consensus 842 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~s~~~~~~la~g~~dg~---I~iwd~~~~~~~~ 911 (1131)
+||+ +||+|+ |++|+|||+.+++.+..+. +|...|.+++|+| ++++|++|+.|++ |++||+.+++.+.
T Consensus 193 s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~ 270 (393)
T d1sq9a_ 193 SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIG 270 (393)
T ss_dssp CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeee
Confidence 9998 788888 8999999999998876554 6888999999999 8999999999975 8999999988777
Q ss_pred eec-------------ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCc
Q 001178 912 KLK-------------GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQV 978 (1131)
Q Consensus 912 ~~~-------------~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~ 978 (1131)
.+. +|.+.|++++|+||+++|+|+|.|++|++||+++++........... -......++|+|++.
T Consensus 271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~--v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD--IEIEEDILAVDEHGD 348 (393)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG--CSSGGGCCCBCTTSC
T ss_pred eeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc--ccCCccEEEECCCCC
Confidence 663 89999999999999999999999999999999998765443211100 012334678999998
Q ss_pred EEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEEC
Q 001178 979 RLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDA 1038 (1131)
Q Consensus 979 ~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~ 1038 (1131)
.++++....++.| ..+..... .......+++++.|+.|++|.-
T Consensus 349 ~~~~~~~~~~~~~--~~~~~~~~---------------~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 349 SLAEPGVFDVKFL--KKGWRSGM---------------GADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp BCSSCCEEEEEEE--CTTTSBST---------------TCTTSCEEEEEETTTEEEEEEE
T ss_pred EEEEcccceEEEC--ccCceecc---------------ccCCCCEEEEEEcCCeEEEEeC
Confidence 7764332222222 21111000 0122456888999999999973
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.6e-24 Score=245.25 Aligned_cols=283 Identities=13% Similarity=0.143 Sum_probs=206.5
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE------c
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW------S 418 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~------s 418 (1131)
.|.+.|.++++++ + ++++|+.|++|+|||..+.+........ .....|...+..++. +
T Consensus 12 ~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 12 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKS-------------YSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGE-------------EEEECCTTCEEEEEEEEEEETT
T ss_pred cccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCccccee-------------EeeeeccCCceEeeeEeeeccC
Confidence 4999999999876 3 5889999999999998766543211000 012234444333322 2
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCccceeee-------eecCcCCeeEEEEecCCC---ceEEEEEcCCCcEEEEeC--
Q 001178 419 P-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLE-------IDAHVGGVNDLAFSYPNK---QLCIVTCGDDKLIRVWDL-- 485 (1131)
Q Consensus 419 p-dg~~las~~~d~~i~vwd~~~~~~~~~~~~-------~~~h~~~V~~l~~s~d~~---~~~l~s~s~d~~i~iwd~-- 485 (1131)
+ ++.++++++.||.|++|++........... ...+...+..++|.+++. ..++++++.|+++++||.
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 2 345788999999999999876554322111 123456688889988643 127899999999999992
Q ss_pred CCc-----------------eeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe------cCCCc
Q 001178 486 SGR-----------------KLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY------DAPGL 542 (1131)
Q Consensus 486 ~~~-----------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~ 542 (1131)
.+. .......+...+.+++|++ ++ +|++|+.||+|++||+++.+....+ ..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 111 1112234556688899865 43 8999999999999999988766543 45778
Q ss_pred eEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-------------cccCCceEEEEEeCCCCEEEEEEcC
Q 001178 543 WCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-------------GFRKKSAGVVQFDTTRNRILAAGED 609 (1131)
Q Consensus 543 ~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~d 609 (1131)
+|.+++|+|||++|++++.+. ..+.|++||+++++.+..+. +|.. .|.+++|+|++++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~-t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCC-CcceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccCCCCCeeEEECCC
Confidence 999999999999999998621 13569999999998888774 4544 89999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCCCc----ceEEEcCCCCEEEEE
Q 001178 610 NQIKFWDMDNVNMLTSTEAEGGLPSL----PRLRFNKEGNLLVVT 650 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~i----~~v~~sp~~~~l~~~ 650 (1131)
++|++||+.+++++.++..|.. .| ..++|+|++..++++
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSC
T ss_pred CEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEEc
Confidence 9999999999999999987654 34 358899999887644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-25 Score=246.98 Aligned_cols=255 Identities=12% Similarity=0.009 Sum_probs=187.9
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
+..+|++.|++|+|+|++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence 57799999999999999999999999999999999887655444455679999999999998654 79999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe----cC--CCceEEEEEEccCCCEE
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY----DA--PGLWCTTMLYSADGSRL 556 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~----~~--~~~~v~~~~~s~~g~~l 556 (1131)
+ ..+........+...+....+.. .+...+++++.|+.+++||++........ .. .........+.+++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 9 56666555555544443333322 34478999999999999998654333221 11 12244566778889999
Q ss_pred EEEeecCCCCceEEEEeCCCCeeeEEEe--cccCCceEEEE-EeCCCCEEEEEEcCCcEEEEEcCCCeEE------EEE-
Q 001178 557 FSCGTSKEGDSHLVEWNESEGALKRTYI--GFRKKSAGVVQ-FDTTRNRILAAGEDNQIKFWDMDNVNML------TST- 626 (1131)
Q Consensus 557 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~- 626 (1131)
++++. ++.|++|++..+....... ........+.. +..++..+++++.||.+.+|+....... ...
T Consensus 164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 99886 8999999998765433221 11222344444 4456679999999999999997653211 111
Q ss_pred ------eccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCC
Q 001178 627 ------EAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 627 ------~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
....+...+++++|+|++++|++|+.||.|++||+.++
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 11233446789999999999999999999999998776
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=7.3e-25 Score=250.65 Aligned_cols=362 Identities=9% Similarity=0.003 Sum_probs=241.9
Q ss_pred EecCCCc-EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 001178 355 FHPFHHT-LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLI 433 (1131)
Q Consensus 355 fspdg~~-llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i 433 (1131)
++.|.+. ++++.+.||+|+|||+.+++.+. .+..| ..+..++|||||++|++++.|++|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~-------------------~l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVK-------------------VIDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEE-------------------EEECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEE-------------------EEeCC-CCeeEEEECCCCCEEEEEeCCCCE
Confidence 4444433 45778889999999999998876 24455 469999999999999999999999
Q ss_pred EEEEecCCCccc--eeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCC
Q 001178 434 HLYTYQGSNDLC--QSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKEN 510 (1131)
Q Consensus 434 ~vwd~~~~~~~~--~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~ 510 (1131)
++||+.+++... ......+|.+.+.+++|+|||++ +++++..++.+++|| .++.++..+.+|...+..+.+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCc
Confidence 999999987532 12223467778888999999995 456777899999999 88888888888887776666544332
Q ss_pred ccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCc
Q 001178 511 IHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKS 590 (1131)
Q Consensus 511 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 590 (1131)
... +.+++++..++.... +.+.+.+++...+.............
T Consensus 165 -~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 165 -VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp -EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred -eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEeccCCc
Confidence 122 333444444443332 13455555555444322221123346
Q ss_pred eEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE-EE--EEECCCcEEEEecCCCch
Q 001178 591 AGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL-LV--VTTADQGIKILANADGLR 666 (1131)
Q Consensus 591 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-l~--~~~~dg~i~iw~~~~~~~ 666 (1131)
+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +. ..+.|+.+.+|+.....
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~- 287 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN- 287 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT-
T ss_pred cEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc-
Confidence 78899999999888866 566789999999998888766544333344444333221 11 12235555555533220
Q ss_pred hhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceee
Q 001178 667 ALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWEL 746 (1131)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~ 746 (1131)
+..|.
T Consensus 288 --------------------------------------------------------------------------~~~~~- 292 (426)
T d1hzua2 288 --------------------------------------------------------------------------HPQYA- 292 (426)
T ss_dssp --------------------------------------------------------------------------CTTTB-
T ss_pred --------------------------------------------------------------------------ccccc-
Confidence 00000
Q ss_pred ecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCccccc
Q 001178 747 TEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTN 826 (1131)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 826 (1131)
++...
T Consensus 293 --------------------------------------------------------------------------~~~~~- 297 (426)
T d1hzua2 293 --------------------------------------------------------------------------WKKVA- 297 (426)
T ss_dssp --------------------------------------------------------------------------TSEEE-
T ss_pred --------------------------------------------------------------------------ceEeE-
Confidence 00000
Q ss_pred CCCCCCCCCeeEEEecCCCCEEEE-------Ee-CCeEEEEECCCceeEEEEe---------CCCCCeeEEEEeCCCCcE
Q 001178 827 DVPENAEDVVPCVALSKNDSYVMS-------AG-GGKVSLFNMMNFKVMTTFM---------SPPPASTFLAFHPQDNNI 889 (1131)
Q Consensus 827 ~~~~~~~~~i~~l~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~---------~~~~~i~~l~~s~~~~~~ 889 (1131)
.+ .+|...+..++|+|||++|++ +. +++|+|||+.+++...++. .+...+.+++||| ||++
T Consensus 298 ~l-~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~ 375 (426)
T d1hzua2 298 EL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDE 375 (426)
T ss_dssp EE-ECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSE
T ss_pred EE-ecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCE
Confidence 00 146777788899999999885 23 6889999999988766542 4566799999999 7765
Q ss_pred E-EEE----eCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEE
Q 001178 890 I-AIG----MEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNIL 932 (1131)
Q Consensus 890 l-a~g----~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 932 (1131)
+ +++ +.+|.|+|||..+++....++++. .++|+|++-
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence 5 433 357889999999999999988775 346777664
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.2e-24 Score=231.33 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=186.4
Q ss_pred eccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEE
Q 001178 404 IVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVW 483 (1131)
Q Consensus 404 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iw 483 (1131)
...+|...|+|++ +||++||+|+.||+|+|||+.+++++. ++.+|.+.|++++| +++ +|++|+.|+.|++|
T Consensus 10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVW 80 (293)
T ss_dssp CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEE
T ss_pred ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeeccccccccccc
Confidence 4568889999865 589999999999999999999987554 68899999999987 566 89999999999999
Q ss_pred e-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE---EecCCCceEEEEEEccCCCEEEEE
Q 001178 484 D-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV---DYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 484 d-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+ ..+........+........ .....++++..++.+.+|+........ .+..+...+..+.+.+ ..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 154 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVLHLR----FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA 154 (293)
T ss_dssp ESSSCCEEEEECCCCSCEEEEE----CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE
T ss_pred cccccccccccccccccccccc----ccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccc
Confidence 9 66766666665555444433 233578999999999999988765433 4455666777666654 566676
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEE
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLR 639 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~ 639 (1131)
+. ++.+++||..+++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+...+.....+.. .+ ..
T Consensus 155 s~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~ 223 (293)
T d1p22a2 155 SG----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RC 223 (293)
T ss_dssp ET----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EE
T ss_pred cC----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--ee
Confidence 65 89999999999999999987655 56666664 57899999999999999999998887765543 34 34
Q ss_pred EcCCCCEEEEEECCCcEEEEecCCC
Q 001178 640 FNKEGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 640 ~sp~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+++++.+|++++.||.|++||+...
T Consensus 224 ~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 224 IRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ccccceEEEEEcCCCEEEEEECCCC
Confidence 6678899999999999999997543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=2.2e-25 Score=249.22 Aligned_cols=196 Identities=12% Similarity=0.025 Sum_probs=161.4
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC--CcEEEEeCCCcee
Q 001178 414 RVAWSP-DGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD--KLIRVWDLSGRKL 490 (1131)
Q Consensus 414 ~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d--~~i~iwd~~~~~~ 490 (1131)
.-.||| ||+++|+++. |.|.+||+.++...+ .+|...|.+++|+|||+ .|++++.+ ..|++||..+..+
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-----~~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-----VPEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-----CSCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-----ccCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE
Confidence 356999 9999999874 799999998876432 36999999999999999 56555433 4799999666777
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KE 564 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~ 564 (1131)
..+..|...|.+++|+ +++++|++++.++.+++|++.+......+..+...+.+++|+|||++|+.+... ..
T Consensus 79 ~~~~~~~~~v~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 79 EKFEENLGNVFAMGVD--RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EECCCCCCSEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EEeeCCCceEEeeeec--ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 7888999999999995 466899999999999999999999888888888889999999999999976532 22
Q ss_pred CCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCe
Q 001178 565 GDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVN 621 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 621 (1131)
.++.+++|+..+++...... +...+..++|+|+|++|++++.++.+.+|+.....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred cccceeeeccccCceeeecc--cccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 46679999999887654433 23367889999999999999999999999876543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=6.3e-26 Score=253.70 Aligned_cols=191 Identities=16% Similarity=0.115 Sum_probs=156.6
Q ss_pred EEEEec-CCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 352 SMDFHP-FHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 352 ~~~fsp-dg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
.-.||| ||++ +|+++ +|.|+|||+.++..+. .+|...|.+++|||||++|++++.+
T Consensus 7 ~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~~ 63 (360)
T d1k32a3 7 AEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGTR 63 (360)
T ss_dssp EEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEET
T ss_pred cccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEcC
Confidence 457999 9985 77665 6799999998876543 2689999999999999999887765
Q ss_pred C--eEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecc
Q 001178 431 H--LIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQ 507 (1131)
Q Consensus 431 ~--~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~ 507 (1131)
. .|++||.++++.. .+..|...|.+++|+|||+ +|++++.++.+++|+ ..++....+..|...+.+++|++
T Consensus 64 ~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 137 (360)
T d1k32a3 64 EGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137 (360)
T ss_dssp TEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred CCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhcc
Confidence 3 7999999987643 4678999999999999999 899999999999999 77888888888999999999965
Q ss_pred cCCccEEEEEe----------cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 508 KENIHFIFSTA----------VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 508 ~~~~~~l~s~s----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
++++|+.++ .++.+++|++.+.+.. ....+...+..+.|+|||++|++++. ++.+.+|+....
T Consensus 138 --dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~~ 210 (360)
T d1k32a3 138 --NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVVL 210 (360)
T ss_dssp --TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSSS
T ss_pred --ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEccccccc
Confidence 567887543 4567999999876544 44456667889999999999999986 788899987654
Q ss_pred e
Q 001178 578 A 578 (1131)
Q Consensus 578 ~ 578 (1131)
.
T Consensus 211 ~ 211 (360)
T d1k32a3 211 N 211 (360)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.8e-23 Score=237.97 Aligned_cols=351 Identities=12% Similarity=0.039 Sum_probs=248.2
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee--EEEec--cc
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK--RTYIG--FR 587 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~--~~ 587 (1131)
-++++.+.||.|.+||.++.+.+..+..+ ..+..++|+|||+++++++. ++.+.+||+.+++.. ..+.. .+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~----dg~v~~~d~~t~~~~~~~~i~~~~~~ 107 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKIGSEA 107 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC----CCCEEEEEeeCCCceEEEEEecCCCC
Confidence 34689999999999999999999988766 46899999999999999876 889999999887643 33331 12
Q ss_pred CCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEEeccCCC---------CCcceEEEcCCCCEEEE-EECCCcE
Q 001178 588 KKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTEAEGGL---------PSLPRLRFNKEGNLLVV-TTADQGI 656 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~i~~v~~sp~~~~l~~-~~~dg~i 656 (1131)
...+.+..|+|||+++ ++++.++.|++||..+++.+..+..+... .....+.++|+|..+++ ...++.+
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i 187 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence 2245556778899986 56888999999999999998887654331 11223344444443322 2223444
Q ss_pred EEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccc
Q 001178 657 KILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLED 736 (1131)
Q Consensus 657 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 736 (1131)
.+|+..+..
T Consensus 188 ~~~d~~~~~----------------------------------------------------------------------- 196 (432)
T d1qksa2 188 LLVDYTDLN----------------------------------------------------------------------- 196 (432)
T ss_dssp EEEETTCSS-----------------------------------------------------------------------
T ss_pred EEEEccCCC-----------------------------------------------------------------------
Confidence 444432210
Q ss_pred cCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceee
Q 001178 737 ISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHW 816 (1131)
Q Consensus 737 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w 816 (1131)
..+++++
T Consensus 197 -----------------------------------------------------~~~~~~i-------------------- 203 (432)
T d1qksa2 197 -----------------------------------------------------NLKTTEI-------------------- 203 (432)
T ss_dssp -----------------------------------------------------EEEEEEE--------------------
T ss_pred -----------------------------------------------------cceEEEE--------------------
Confidence 0011110
Q ss_pred cCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC-----CCCCeeEEEEeCCCCcE
Q 001178 817 QPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-----PPPASTFLAFHPQDNNI 889 (1131)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~ 889 (1131)
.+...+..++|+|||+++++++ ++.+.++|..+++.+..+.. +........+.. .+..
T Consensus 204 --------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~ 268 (432)
T d1qksa2 204 --------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPV 268 (432)
T ss_dssp --------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEE
T ss_pred --------------cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCce
Confidence 1344567899999999988887 57899999999988877653 333444455554 5555
Q ss_pred EEEEe-CCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 890 IAIGM-EDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 890 la~g~-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
.++.. .++.|.+|+..... ...|...|....++|++..+++++.|.+.++|...+... +....
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------------~~~~~ 332 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP------------EAEIS 332 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS------------SHHHH
T ss_pred ecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC------------CCCee
Confidence 55443 47889999866543 456778899999999999999999999999998765321 00123
Q ss_pred eEEEEcCCCcEEEEE-eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe-----cCCcEEEEECCCCc
Q 001178 969 TRVQFHSDQVRLLVN-HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF-----TDGSIGVFDADSLR 1042 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~-----~dg~i~vwd~~~~~ 1042 (1131)
..+++ ||++.++++ .|+.+++|++.++..+. .+ ...|.+++|||||++++.+. .+|.|.|||..+++
T Consensus 333 ~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~---~~---~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 333 GSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT---EG---QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp TCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC---SS---CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred eEEEE-EechhhcccccCCceEecccccccccC---CC---CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 34555 899999986 48999999986654332 22 56899999999999886664 46889999999999
Q ss_pred eeeEecC
Q 001178 1043 LRCRIAP 1049 (1131)
Q Consensus 1043 ~~~~~~~ 1049 (1131)
+...+.+
T Consensus 406 ~~~~i~~ 412 (432)
T d1qksa2 406 LKHVIKD 412 (432)
T ss_dssp EEEEECC
T ss_pred EEeEecC
Confidence 9888765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=5.8e-23 Score=234.69 Aligned_cols=351 Identities=11% Similarity=0.072 Sum_probs=238.6
Q ss_pred ecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE-
Q 001178 505 PHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY- 583 (1131)
Q Consensus 505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~- 583 (1131)
+..+....++++.+.||+|++||+.+++.+..+..+. .+..++|+|||+++++++. ++.+++||+.+++.....
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEEE
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEEE
Confidence 3333444466888999999999999999988888764 5899999999999999876 889999999988754433
Q ss_pred -ecc--cCCceEEEEEeCCCCEEEE-EEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCE-EEEEECCCcEEE
Q 001178 584 -IGF--RKKSAGVVQFDTTRNRILA-AGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNL-LVVTTADQGIKI 658 (1131)
Q Consensus 584 -~~~--~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~-l~~~~~dg~i~i 658 (1131)
... +...+.+++|+|||+++++ +..++.+++||..++..+..+..+.. .+..+.+.+++.. .++.+.|+...+
T Consensus 101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCEEE
Confidence 211 1124556778899998765 45899999999999999888876654 4666777777654 345556666655
Q ss_pred EecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccC
Q 001178 659 LANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDIS 738 (1131)
Q Consensus 659 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 738 (1131)
+.....
T Consensus 179 ~~~~~~-------------------------------------------------------------------------- 184 (426)
T d1hzua2 179 VNVKET-------------------------------------------------------------------------- 184 (426)
T ss_dssp EEETTT--------------------------------------------------------------------------
T ss_pred EecCCC--------------------------------------------------------------------------
Confidence 543221
Q ss_pred CCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecC
Q 001178 739 DKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQP 818 (1131)
Q Consensus 739 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~ 818 (1131)
+.+.++.. .++..+. +..
T Consensus 185 ~~i~~~~~------------------------------~~~~~~~---------~~~----------------------- 202 (426)
T d1hzua2 185 GKVLLVNY------------------------------KDIDNLT---------VTS----------------------- 202 (426)
T ss_dssp TEEEEEEC------------------------------SSSSSCE---------EEE-----------------------
T ss_pred CeEEEEEe------------------------------cccccee---------eEE-----------------------
Confidence 00000000 0000000 000
Q ss_pred CCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCC--CCCeeEEEEeCCCCcEE--EE
Q 001178 819 SNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP--PPASTFLAFHPQDNNII--AI 892 (1131)
Q Consensus 819 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~l--a~ 892 (1131)
. .+...+..++|+|++++++++. +..+.+++..+++.+...... ........+.......+ +.
T Consensus 203 ---------~--~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T d1hzua2 203 ---------I--GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271 (426)
T ss_dssp ---------E--ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred ---------e--ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence 0 2456678899999999998887 577999999999988877632 22233444443122222 23
Q ss_pred EeCCCcEEEEEeec-------ceeEEeecccccCeeEEEEccCCCEEEE-------EeCCCcEEEEEcCCCceeeeeeee
Q 001178 893 GMEDSTIQIYNVRV-------DEVKTKLKGHQKHITGLAFSTNLNILVS-------SGSDAQLIFWNTDTWEKRKSIAIQ 958 (1131)
Q Consensus 893 g~~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s-------~~~Dg~v~lwd~~~~~~~~~~~~~ 958 (1131)
.+.|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|++||+.+++.......
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~- 350 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP- 350 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC-
T ss_pred cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec-
Confidence 34577888887654 4678889999999999999999999994 45577888888877553221100
Q ss_pred cCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE-----ecCCcE
Q 001178 959 LPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT-----FTDGSI 1033 (1131)
Q Consensus 959 ~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~-----~~dg~i 1033 (1131)
+..+..+..+...|.+++|||||++++++ +.+|.|
T Consensus 351 ----------------------------------------~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i 390 (426)
T d1hzua2 351 ----------------------------------------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 390 (426)
T ss_dssp ----------------------------------------HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEE
T ss_pred ----------------------------------------cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeE
Confidence 00111122236679999999999977543 357889
Q ss_pred EEEECCCCceeeEecCC
Q 001178 1034 GVFDADSLRLRCRIAPS 1050 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~ 1050 (1131)
+|||..|++....+.+.
T Consensus 391 ~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 391 VVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEETTTTEEEEEECCT
T ss_pred EEEECCCCeEEEEECCC
Confidence 99999999998888754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.3e-19 Score=196.07 Aligned_cols=267 Identities=10% Similarity=0.062 Sum_probs=208.5
Q ss_pred cEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEEec
Q 001178 361 TLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG-VAFTKHLIHLYTYQ 439 (1131)
Q Consensus 361 ~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la-s~~~d~~i~vwd~~ 439 (1131)
++.++++.|++|.|||+.+++.+.. +. ....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 4567788999999999999987652 11 234578999999999874 66678999999999
Q ss_pred CCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccE-EEEE
Q 001178 440 GSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHF-IFST 517 (1131)
Q Consensus 440 ~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~ 517 (1131)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+ .+++.+..+..+ ..+.++++++ ++.. ++++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeec--CCCeeeeee
Confidence 987554 455554 4789999999986 567788899999999 666667766644 4567777765 4444 4566
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEe
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 597 (1131)
..++.+.+|+..+......+.... .+..+.++|+++.++++.. ..+.+.+|+....+........ .....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE--AAPSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS--SEEEEEEEC
T ss_pred ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeecc---cccccccccccceeeeeccccc--CCcceeecc
Confidence 778999999999888777666543 4788999999999988864 2567888888888777766643 256778999
Q ss_pred CCCCEEEEEEc---CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE-EEEECCCcEEEEecCCC
Q 001178 598 TTRNRILAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL-VVTTADQGIKILANADG 664 (1131)
Q Consensus 598 ~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l-~~~~~dg~i~iw~~~~~ 664 (1131)
+++..+++++. ++.|++||..+++.+..+..+. .+..++|+|||++| ++++.++.|++||+.++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 99998876543 4689999999999988876543 57899999999987 46667899999999887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=7.3e-21 Score=210.59 Aligned_cols=331 Identities=9% Similarity=-0.019 Sum_probs=226.6
Q ss_pred EEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE-ECCCcEEEEecCCCchhhhhhh
Q 001178 594 VQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 594 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
++|+++++++++++.++.|.+||+.+++.+.++..+... .+.+++|+|||++++++ ..++.|.+||+.++.. ...+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~-~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC-SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC-CcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeec
Confidence 468899999999999999999999999999988754332 46899999999987555 5689999999987621 11110
Q ss_pred ccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCC
Q 001178 673 TRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDP 752 (1131)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~ 752 (1131)
....
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (346)
T d1jmxb_ 80 LSSV---------------------------------------------------------------------------- 83 (346)
T ss_dssp SCCS----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCC
Q 001178 753 LQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENA 832 (1131)
Q Consensus 753 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 832 (1131)
...+...+..++|+|||++++++..+.....|.... ....+.+|+..++...........
T Consensus 84 ----------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~ 143 (346)
T d1jmxb_ 84 ----------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVRTFPM 143 (346)
T ss_dssp ----------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred ----------ccccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEEeeec
Confidence 000223345688999999998887654333222111 011234455555443321111122
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEe
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTK 912 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~ 912 (1131)
...+..+.++++++.++. ++.+.+|++.+++.+..+..+ .....+.++|++..+++.+..++.+.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 213 (346)
T d1jmxb_ 144 PRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI------- 213 (346)
T ss_dssp CSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE-------
T ss_pred cCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee-------
Confidence 345566778888877665 456899999999999888754 3456677888444444555555666665532
Q ss_pred ecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEe
Q 001178 913 LKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYD 992 (1131)
Q Consensus 913 ~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd 992 (1131)
..+.+....++++..++.+.+|++.++......... +...+..+.+++++.+++...++.+++||
T Consensus 214 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~v~d 278 (346)
T d1jmxb_ 214 ----------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-----LTELYFTGLRSPKDPNQIYGVLNRLAKYD 278 (346)
T ss_dssp ----------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-----CSSCEEEEEECSSCTTEEEEEESEEEEEE
T ss_pred ----------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec-----ccceeEEEEEeCCCCEEEEecCCeEEEEE
Confidence 122334455667777888999999987654433222 12567888999999999988888999999
Q ss_pred CCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 993 GSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 993 ~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
..+++.+..+.. ...+.+++|||||++|++++.|+.|+|||+++++.+.++..+.
T Consensus 279 ~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 279 LKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp TTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence 999998887754 3478999999999999999999999999999999999887544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=4.6e-19 Score=191.58 Aligned_cols=272 Identities=11% Similarity=0.085 Sum_probs=208.0
Q ss_pred CCCCCcccccCCCcccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceec
Q 001178 323 PVPSQQATWSLDDLPRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQA 402 (1131)
Q Consensus 323 s~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1131)
+.++.+.+|.... .++++++.....+..++|||||++++++++.++.|++||+.+++.+..
T Consensus 9 ~~~~~v~v~D~~t--~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~----------------- 69 (301)
T d1l0qa2 9 SESDNISVIDVTS--NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT----------------- 69 (301)
T ss_dssp TTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-----------------
T ss_pred CCCCEEEEEECCC--CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-----------------
Confidence 4556677776544 567778887788999999999998778888999999999999887652
Q ss_pred eeccCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEE
Q 001178 403 AIVKDSSISVSRVAWSPDGNFIGV-AFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIR 481 (1131)
Q Consensus 403 ~~~~~h~~~V~~~~~spdg~~las-~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~ 481 (1131)
+..|. .+..++|++++..+++ +..++.+.+|+..+++... .+ .+.....+++|+||++. +++++..++.+.
T Consensus 70 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~dg~~-~~~~~~~~~~~~ 141 (301)
T d1l0qa2 70 --VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TV-KTGKSPLGLALSPDGKK-LYVTNNGDKTVS 141 (301)
T ss_dssp --EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EE-ECSSSEEEEEECTTSSE-EEEEETTTTEEE
T ss_pred --eeccc-cccccccccccccccccccccceeeecccccceeee---ec-cccccceEEEeecCCCe-eeeeecccccee
Confidence 33343 5789999999986654 5567899999999876443 33 34556889999999996 567788899999
Q ss_pred EEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEE
Q 001178 482 VWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSC 559 (1131)
Q Consensus 482 iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 559 (1131)
+|+ .++..+..+..+ ..+..+++++ ++..+++++. ++.+.+|+............ ...+..++++++++.++++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~ 217 (301)
T d1l0qa2 142 VINTVTKAVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVT 217 (301)
T ss_dssp EEETTTTEEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEE
T ss_pred eeeccccceeeecccC-CCceEEEeec--cccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccc
Confidence 999 777777776644 4567777765 4456665554 56777887776655554443 3457889999999998877
Q ss_pred eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEE-EEEcCCcEEEEEcCCCeEEEEEec
Q 001178 560 GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRIL-AAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 560 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
..+ ...+.|++||..+++.+..+..+ ..+..++|+|||++|+ +++.++.|++||+.+++.+.++..
T Consensus 218 ~~~-~~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 218 NVD-KYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEC-SSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccc-ceeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 642 23578999999999998887753 3578999999999874 667799999999999999988864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=1.8e-19 Score=198.38 Aligned_cols=318 Identities=10% Similarity=0.057 Sum_probs=192.7
Q ss_pred CEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEE-EEECCCcEEEEecCCCchhhhhhhccccccc
Q 001178 601 NRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLV-VTTADQGIKILANADGLRALRAIETRAYETS 679 (1131)
Q Consensus 601 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 679 (1131)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++. ....+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-~~~~~~~~~---- 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDLST---- 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEECCB----
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecCC----
Confidence 589999999999999999999999998766555688999999999875 55678999999998762 111111000
Q ss_pred cccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEE
Q 001178 680 RASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVA 759 (1131)
Q Consensus 680 ~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~ 759 (1131)
T Consensus 77 -------------------------------------------------------------------------------- 76 (337)
T d1pbyb_ 77 -------------------------------------------------------------------------------- 76 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEE
Q 001178 760 MPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCV 839 (1131)
Q Consensus 760 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l 839 (1131)
...+...+..++++|+++.++++..+.....|..... ...+.+|+..++....... ....+.++
T Consensus 77 ---~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~---~~~~~~~~ 140 (337)
T d1pbyb_ 77 ---PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE---APRQITML 140 (337)
T ss_dssp ---TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE---CCSSCCCE
T ss_pred ---CcccccceeeEEEcCCCcEEEEeecCCcceeeecccc----------ccceeeccccCCeEEEecc---ccCCceEE
Confidence 0012233456889999998888877655543322110 0112233333333222110 12233344
Q ss_pred EecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEeecceeEEeeccccc
Q 001178 840 ALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVRVDEVKTKLKGHQK 918 (1131)
Q Consensus 840 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~h~~ 918 (1131)
+|+|||+++++++ +.+.+||..+++....+..+.. .....++| ++..+ ..+...+....+.
T Consensus 141 ~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------------- 202 (337)
T d1pbyb_ 141 AWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF--------------- 202 (337)
T ss_dssp EECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE---------------
T ss_pred EEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee---------------
Confidence 4444444444432 2344444444444444433221 11122222 11111 1111111111111
Q ss_pred CeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCccc
Q 001178 919 HITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMEC 998 (1131)
Q Consensus 919 ~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~ 998 (1131)
.....+.........++.+.+|+..++......... .......++++|++.++++. ++.+++||+.+++.
T Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~ 272 (337)
T d1pbyb_ 203 ----YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-----MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNAS 272 (337)
T ss_dssp ----EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-----CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEE
T ss_pred ----eeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-----CCcceEEEEecccceEEEEc-cccEEEEECCCCcE
Confidence 111122222333444667899999887654332221 22567788999999988755 68999999999999
Q ss_pred ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 999 IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 999 ~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
+..+.. ...+.+++|+|||++|++++.|+.|+|||.++++.+.++....
T Consensus 273 ~~~~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g 321 (337)
T d1pbyb_ 273 IKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EEEEcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence 988754 4578899999999999999999999999999999999887543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=4.3e-19 Score=195.31 Aligned_cols=295 Identities=11% Similarity=0.106 Sum_probs=205.7
Q ss_pred cEEEEEecCCeEEEEeCCCCceeEEecCC--CceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCC
Q 001178 512 HFIFSTAVDGKIKAWLYDNVGSRVDYDAP--GLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKK 589 (1131)
Q Consensus 512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 589 (1131)
+++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888776543 446789999999999866542 2789999999999999888764321
Q ss_pred ----ceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 590 ----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 590 ----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+..++|+|++++++++. .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 244689999999998875 46789999999999888887554 4788999999999998864
Q ss_pred CcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCCCcee
Q 001178 654 QGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRN 733 (1131)
Q Consensus 654 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (1131)
.+.+||..++. ....+..+..... ..++|+
T Consensus 155 -~~~~~d~~~~~-~~~~~~~~~~~~~--------------~~~~~~---------------------------------- 184 (337)
T d1pbyb_ 155 -DLHVMDPEAGT-LVEDKPIQSWEAE--------------TYAQPD---------------------------------- 184 (337)
T ss_dssp -SEEEEETTTTE-EEEEECSTTTTTT--------------TBCCCB----------------------------------
T ss_pred -CcceeeeecCc-EEEEeecCCcccc--------------ceecCC----------------------------------
Confidence 46789887662 1111111000000 001111
Q ss_pred ccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-cceeeEEeecCCCCCCCCccceeee
Q 001178 734 LEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-NGVQKLWKWNRTEQNPSGKATAAVA 812 (1131)
Q Consensus 734 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 812 (1131)
+..+..... .+....
T Consensus 185 ---------------------------------------------~~~~~~~~~~~~~~~~------------------- 200 (337)
T d1pbyb_ 185 ---------------------------------------------VLAVWNQHESSGVMAT------------------- 200 (337)
T ss_dssp ---------------------------------------------CCCCCCCCTTTTEEEE-------------------
T ss_pred ---------------------------------------------cceeeccccccceeee-------------------
Confidence 100000000 000000
Q ss_pred ceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEE-EeCCCCCeeEEEEeCCCCcEE
Q 001178 813 PQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTT-FMSPPPASTFLAFHPQDNNII 890 (1131)
Q Consensus 813 ~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~l 890 (1131)
.......+......+. ++.+.+|+..++..... +..+...+..++++| ++.++
T Consensus 201 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 255 (337)
T d1pbyb_ 201 ------------------------PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRA 255 (337)
T ss_dssp ------------------------EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEE
T ss_pred ------------------------eeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc-cceEE
Confidence 0001111111111122 45688889888876554 445667788899999 78877
Q ss_pred EEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001178 891 AIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 891 a~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~ 955 (1131)
+.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||..+++.....
T Consensus 256 ~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 256 FGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred EEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 655 5889999999999888875 5677899999999999999999999999999998765554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=2.5e-18 Score=189.86 Aligned_cols=312 Identities=8% Similarity=-0.029 Sum_probs=207.2
Q ss_pred cCCccEEEEEecCCeEEEEeCCCCceeEEecC-CCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecc
Q 001178 508 KENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA-PGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGF 586 (1131)
Q Consensus 508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 586 (1131)
+++++++++++.|+.|.+||+++.+....+.. +...+.+++|+|||+++++++. .++.|++||+.+++.+..+...
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeeeeccc
Confidence 46779999999999999999999988777664 4556789999999999876653 2789999999999998877643
Q ss_pred cCC-----ceEEEEEeCCCCEEEEEE------------cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEE
Q 001178 587 RKK-----SAGVVQFDTTRNRILAAG------------EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVV 649 (1131)
Q Consensus 587 ~~~-----~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~ 649 (1131)
... .+..++|+|||+++++++ .++.+.+|+..+++....+..+.....+..+.+++++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 221 244689999999888765 477899999888765544433322225667778888776654
Q ss_pred EECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccCCC
Q 001178 650 TTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIE 729 (1131)
Q Consensus 650 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 729 (1131)
++.+.+|+..++. ....+..+... ....++|+ +
T Consensus 162 ---~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~-----------------------------~ 194 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGK-YTVALPLRNWN--------------RKGYSAPD-----------------------------V 194 (346)
T ss_dssp ---SSSEEEECTTTCC-EEEEECSTTCC--------------CTTBCCCB-----------------------------C
T ss_pred ---CCcceEEEccCCC-EEEEEecCCCc--------------cceEEecc-----------------------------c
Confidence 3568889887662 22222111110 00022222 1
Q ss_pred Cce-eccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccc
Q 001178 730 KPR-NLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKAT 808 (1131)
Q Consensus 730 ~~~-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 808 (1131)
..+ +....++.+.++... ..+......+.+...++.+.+|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------- 238 (346)
T d1jmxb_ 195 LYFWPHQSPRHEFSMLYTI-------------------------ARFKDDKQDPATADLLYGYLSVDLK----------- 238 (346)
T ss_dssp CCCCCCCCTTCEEEEEEEE-------------------------EEC-------CCCEEEEEEEEEETT-----------
T ss_pred cEEEEEecCCCceEeeeee-------------------------eeeccCceeEeeccCCceEEEEECC-----------
Confidence 111 111111222222111 1112223333344445555555543
Q ss_pred eeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCc
Q 001178 809 AAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNN 888 (1131)
Q Consensus 809 ~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 888 (1131)
++........ .+...+..+.+++++.+++...++.|.+||..+++.+..+.. ...+.+++|+| |++
T Consensus 239 -----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~-DG~ 304 (346)
T d1jmxb_ 239 -----------TGKTHTQEFA-DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGD 304 (346)
T ss_dssp -----------TCCEEEEEEE-ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSS
T ss_pred -----------CCceEEEEee-cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC-CCCEEEEEEcC-CCC
Confidence 3322221111 356778889999999999988888999999999999988874 45799999999 899
Q ss_pred EEEEEeCCCcEEEEEeecceeEEeecccccC
Q 001178 889 IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKH 919 (1131)
Q Consensus 889 ~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~ 919 (1131)
+|++++.|+.|++||..+++.+..++.+.++
T Consensus 305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 305 KLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred EEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 9999999999999999999999988755443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.80 E-value=1.2e-16 Score=178.35 Aligned_cols=333 Identities=9% Similarity=-0.006 Sum_probs=215.8
Q ss_pred ccCCCCCEEEEEEcCCCCEEEEE-----eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEc----
Q 001178 405 VKDSSISVSRVAWSPDGNFIGVA-----FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCG---- 475 (1131)
Q Consensus 405 ~~~h~~~V~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s---- 475 (1131)
...+.+++.+++++|||+.+++. +..+.|.+||..+++.+. ++..+.. ..++|+|||+ ++++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~--~~~a~SpDG~--~l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFL--PNPVAAHSGS--EFALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCC--ccEEEcCCCC--EEEEEeecCC
Confidence 34678899999999999998765 234579999999987654 4555544 3799999999 455543
Q ss_pred ------CCCcEEEEe-CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEE
Q 001178 476 ------DDKLIRVWD-LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTML 548 (1131)
Q Consensus 476 ------~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 548 (1131)
.++.|.+|| .+++.+..+..+......+... ...+.
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~ 131 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-------------------------------------SWMNA 131 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccC-------------------------------------CCcEE
Confidence 356677777 6666666555444433322211 12467
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCCCeEEEEEe
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
|+++++.++.... +.++.+.+|+....+...... ...++.++|+++.+ ++.+.|+.+.+|+...+.......
T Consensus 132 ~s~dg~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 132 NTPNNADLLFFQF--AAGPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred EEeCCCcEEEEEE--cCCCceEEeeccCCeEEEEec-----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 8888888776654 235678889988776654443 35568899998754 678899999999999887766554
Q ss_pred ccC----CCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 628 AEG----GLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 628 ~~~----~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
... .........+++++. ++..+.++.+.+|+...+......
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~--------------------------------- 250 (373)
T d2madh_ 205 GAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKA--------------------------------- 250 (373)
T ss_pred eeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEE---------------------------------
Confidence 322 111233455666554 445567888889887654100000
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
.|+. .........+.|.+...+
T Consensus 251 ---------------------------------------~~~~-------------------~~~~~~~~~~~~~~~~~~ 272 (373)
T d2madh_ 251 ---------------------------------------PIDA-------------------LSGGRKADTWRPGGWQQV 272 (373)
T ss_pred ---------------------------------------eecc-------------------ccCcEEeeeeccCcceee
Confidence 0000 011111222222222222
Q ss_pred EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-CCeEEEEECC
Q 001178 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-GGKVSLFNMM 862 (1131)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~ 862 (1131)
+.+.++.. ...+..++..++... ++.+.+||..
T Consensus 273 ~~~~d~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 273 AYLKSSDG----------------------------------------------IYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EEecCCCe----------------------------------------------EEEecCCCceEEeecCCCeEEEEECC
Confidence 22222111 112233444444444 7889999999
Q ss_pred CceeEEEEeCCCCCeeEEEEeCCCCc--EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 863 NFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 863 ~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
+++.+..+. +...+..++|+| |++ ++++++.|++|++||+.+++.+..+.+|....+.|++.++
T Consensus 307 t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 307 VGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999998876 456789999999 665 4578999999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=1.6e-16 Score=177.40 Aligned_cols=289 Identities=7% Similarity=-0.020 Sum_probs=198.1
Q ss_pred CCCcEEEEEEecCCCcEEEEE----cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+.. ..++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHSG 77 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCCC
Confidence 778999999999999865542 2346799999999987752 223332 369999999
Q ss_pred CEEEEEe----------CCCeEEEEEecCCCccceeeeeecCcCC-------eeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 422 NFIGVAF----------TKHLIHLYTYQGSNDLCQSLEIDAHVGG-------VNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 422 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~h~~~-------V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
++|++++ .++.|.+||..+++.+. .+..+... ...+.|++|++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEee
Confidence 9999875 35789999999987554 33333332 2568999999975555666778899999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCC------CceEEEEEEccCCCEEE
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAP------GLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~ 557 (1131)
..++..... ....++.+++... ..+++.+.|+.+.+|+............. ......+.+.+++.+++
T Consensus 155 ~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (373)
T d2madh_ 155 QGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW 229 (373)
T ss_pred ccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE
Confidence 555444333 3355667765443 46678899999999999887665543321 12344556666666655
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEe--ccc---------CCceEEEEEeCCCCEEE----------EEEcCCcEEEEE
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYI--GFR---------KKSAGVVQFDTTRNRIL----------AAGEDNQIKFWD 616 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~---------~~~v~~~~~s~~~~~l~----------~~~~dg~i~iwd 616 (1131)
... ++.+.+|+...+....... ... ......+++++++..++ ....++.+.+||
T Consensus 230 ~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d 304 (373)
T d2madh_ 230 PVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred ecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence 442 6788888877665332211 110 11223355666655443 455677899999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCE--EEEEECCCcEEEEecCCCchhhhhhh
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNL--LVVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
..+++.+..+.... .+..++|+|||+. +++++.|+.|++||..++ +.++.+.
T Consensus 305 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~ 358 (373)
T d2madh_ 305 GLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTV 358 (373)
T ss_pred CCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEC
Confidence 99999988876443 5789999999984 467889999999999998 4455444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=8e-16 Score=168.41 Aligned_cols=209 Identities=10% Similarity=0.085 Sum_probs=141.9
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEE--EeCCCCCeeEEEEeCCCCcEEEEEe-CCCcEEEEEeecce
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGM-EDSTIQIYNVRVDE 908 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~-~dg~I~iwd~~~~~ 908 (1131)
..+..++|+|||++|++++ ++.|.+|+......... ...+...+.++.++| +++++++++ .+..|.+|+.....
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCC
Confidence 3355789999999998887 57899998877655444 345667788999999 677666665 45679999987643
Q ss_pred eEEe------ecccccCeeEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeeee--eeecC--CCCCCCCceEEEEcCCC
Q 001178 909 VKTK------LKGHQKHITGLAFSTNLNILVSSG-SDAQLIFWNTDTWEKRKSI--AIQLP--AGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 909 ~~~~------~~~h~~~V~~l~~s~dg~~l~s~~-~Dg~v~lwd~~~~~~~~~~--~~~~~--~~~~~~~v~~v~~s~d~ 977 (1131)
.... ...+......++|++++.+++... ..+...+|++......... ..... ..........+++++|+
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 2211 122345568899999998876654 4567788886653322111 11111 11122456778999999
Q ss_pred cEEEEEe--CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEec-CCcEEEE--ECCCCce
Q 001178 978 VRLLVNH--ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFT-DGSIGVF--DADSLRL 1043 (1131)
Q Consensus 978 ~~l~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~-dg~i~vw--d~~~~~~ 1043 (1131)
+++++.. ++.+.+|++...........+......+.+++|||||++|++++. ++.|++| |.++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 9888753 678999998866555444433333566788999999999888764 5889999 4566654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=3.7e-16 Score=171.11 Aligned_cols=286 Identities=10% Similarity=0.040 Sum_probs=188.7
Q ss_pred EEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEE
Q 001178 782 ILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLF 859 (1131)
Q Consensus 782 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vw 859 (1131)
+++++.+++|++|+++..... .+...+ .+...+..++|||||++|++++ ++.|++|
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l--------------------~~~~~~--~~~~~v~~la~spDG~~L~v~~~~d~~i~~~ 64 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGAL--------------------TLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 64 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCE--------------------EEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEECCCCCcEEEEEEcCCCCe--------------------EEEEEE--cCCCCEeEEEEeCCCCEEEEEECCCCeEEEE
Confidence 356667899999998642110 000001 3567889999999999997665 7899999
Q ss_pred ECCCceeEEEE---eCCCCCeeEEEEeCCCCcEEEEEeC-CCcEEEEEeecceeEE--eecccccCeeEEEEccCCCEEE
Q 001178 860 NMMNFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGME-DSTIQIYNVRVDEVKT--KLKGHQKHITGLAFSTNLNILV 933 (1131)
Q Consensus 860 d~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~-dg~I~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~ 933 (1131)
++.......++ ..+...+..++|+| |+++|++++. ++.|.+|+........ ....+...+.++.|+||+++++
T Consensus 65 ~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 65 RIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp EECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred EEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence 98765433322 23445678899999 7888887774 6789999988765433 3445677789999999999888
Q ss_pred EEeC-CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccce----ee---e
Q 001178 934 SSGS-DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIR----QW---V 1003 (1131)
Q Consensus 934 s~~~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~----~~---~ 1003 (1131)
+++. +..+.+|+.........................++|++++.+++... .+...+|+........ .. .
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 223 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeee
Confidence 7775 45689999877554333322222222235668899999999988753 5677788765432111 11 1
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEe-cCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEE
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATF-TDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVG 1082 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~ 1082 (1131)
...........+++++|+++++++. .++.+.+|++........+...... . ..+..++|+| |+++|+++
T Consensus 224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~p~~~a~sp-DGk~l~va 293 (333)
T d1ri6a_ 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-------E--TQPRGFNVDH-SGKYLIAA 293 (333)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-------S--SSCCCEEECT-TSSEEEEE
T ss_pred cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC-------C--CCeeEEEEeC-CCCEEEEE
Confidence 1112245678899999999777665 5688999998765444333322100 1 1233589999 56665555
Q ss_pred -ecCCcEEEEecCCCcccc
Q 001178 1083 -LTDGSVKVIEPSETERKW 1100 (1131)
Q Consensus 1083 -~~Dg~v~iW~~~~~~~~w 1100 (1131)
..+++|++|++..+.++-
T Consensus 294 ~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 294 GQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp CTTTCEEEEEEEETTTTEE
T ss_pred ECCCCeEEEEEEECCCCcE
Confidence 457899999886655443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=1.7e-16 Score=175.73 Aligned_cols=289 Identities=13% Similarity=0.078 Sum_probs=189.9
Q ss_pred EEEEEEecCCCcEEEEE----cCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 350 VVSMDFHPFHHTLLVVG----CGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 350 V~~~~fspdg~~llasg----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+.-.+.+|||++++++. ..++.|.+||..+++.+.. +..+. +..++|||||++|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l~ 62 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFIA 62 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEEE
Confidence 33446789999765543 3356799999999987652 22232 33699999999887
Q ss_pred EEe----------CCCeEEEEEecCCCccceeeeeecC----cCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCcee
Q 001178 426 VAF----------TKHLIHLYTYQGSNDLCQSLEIDAH----VGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKL 490 (1131)
Q Consensus 426 s~~----------~d~~i~vwd~~~~~~~~~~~~~~~h----~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~ 490 (1131)
+++ .|+.|.+||..+++.+........+ ......++|++|++.++++..+.+..+.+|| .+++.+
T Consensus 63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~ 142 (355)
T d2bbkh_ 63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 142 (355)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence 653 4789999999998765432211112 1234568999999965555556788999999 778777
Q ss_pred EEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec------CCCceEEEEEEccCCCEEEEEeecCC
Q 001178 491 FQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD------APGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 491 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
..+..+..... .. .. ....++.+.|+...++............ .+...+....+.+++..++.++.
T Consensus 143 ~~~~~~~~~~~-~~---~~-~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 214 (355)
T d2bbkh_ 143 RMLDVPDCYHI-FP---TA-PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--- 214 (355)
T ss_dssp EEEECCSEEEE-EE---EE-TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT---
T ss_pred eEEecCCcceE-ee---cC-CcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC---
Confidence 77765432221 11 11 1234455566666555544433322221 12223555678888888888765
Q ss_pred CCceEEEEeCCCCeeeE--EEeccc---------CCceEEEEEeCCCCEEEEEEcC----------CcEEEEEcCCCeEE
Q 001178 565 GDSHLVEWNESEGALKR--TYIGFR---------KKSAGVVQFDTTRNRILAAGED----------NQIKFWDMDNVNML 623 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~--~~~~~~---------~~~v~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~~~~ 623 (1131)
++.+++|+...+.... ....+. ......+++++++..++....+ +.|.+||..+++.+
T Consensus 215 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 215 -TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp -TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred -CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence 8899999998775422 121111 0123347899999988776543 46999999999988
Q ss_pred EEEeccCCCCCcceEEEcCCCC--EEEEEECCCcEEEEecCCCchhhhhhh
Q 001178 624 TSTEAEGGLPSLPRLRFNKEGN--LLVVTTADQGIKILANADGLRALRAIE 672 (1131)
Q Consensus 624 ~~~~~~~~~~~i~~v~~sp~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~ 672 (1131)
..+.... .+.+++|+|||+ ++++++.|+.|++||..++ +.++.+.
T Consensus 294 ~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~ 340 (355)
T d2bbkh_ 294 AKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 340 (355)
T ss_dssp EEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEe
Confidence 8876543 478999999997 4456677999999999988 4444443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=5.4e-15 Score=163.39 Aligned_cols=314 Identities=8% Similarity=-0.030 Sum_probs=199.3
Q ss_pred ccCCccEEEEEe-----cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec------CCCCceEEEEeCC
Q 001178 507 QKENIHFIFSTA-----VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS------KEGDSHLVEWNES 575 (1131)
Q Consensus 507 ~~~~~~~l~s~s-----~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~------~~~~~~i~iwd~~ 575 (1131)
+.+|++.++... .++.|.+||..+++....+..... ..++|+|||++|++.+.. ...++.|.+||..
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 356777777653 456799999999887777665443 369999999999876421 1126789999999
Q ss_pred CCeeeEEEecccCC------ceEEEEEeCCCCEEEEEE--cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEE
Q 001178 576 EGALKRTYIGFRKK------SAGVVQFDTTRNRILAAG--EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLL 647 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l 647 (1131)
+++.+..+..+... ....++|++++++++++. .+..+.+|+..+++.+..+..... ...+.......
T Consensus 87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 161 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTF 161 (355)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEE
T ss_pred CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc-----ceEeecCCcce
Confidence 99988877543321 234578999999888765 467899999999998887765432 11111112233
Q ss_pred EEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccccC
Q 001178 648 VVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARG 727 (1131)
Q Consensus 648 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 727 (1131)
+..+.|+...++.......
T Consensus 162 ~~~~~dg~~~~v~~~~~~~------------------------------------------------------------- 180 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGT------------------------------------------------------------- 180 (355)
T ss_dssp EEEETTSCEEEEECCSSSC-------------------------------------------------------------
T ss_pred EEEcCCCCEEEEEecCCCe-------------------------------------------------------------
Confidence 3344455444443322200
Q ss_pred CCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCcc
Q 001178 728 IEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKA 807 (1131)
Q Consensus 728 ~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 807 (1131)
+..++.... ...+...+....+++++..++..+.++.+.+|++..+...
T Consensus 181 -------------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 229 (355)
T d2bbkh_ 181 -------------PEITHTEVF-------------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK----- 229 (355)
T ss_dssp -------------CEEEECCCC-------------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE-----
T ss_pred -------------EEEEecccc-------------cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEE-----
Confidence 000000000 0002222334456777777888888899999987654321
Q ss_pred ceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe-C----------CeEEEEECCCceeEEEEeCCCCC
Q 001178 808 TAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG-G----------GKVSLFNMMNFKVMTTFMSPPPA 876 (1131)
Q Consensus 808 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~-d----------g~i~vwd~~~~~~~~~~~~~~~~ 876 (1131)
+++..++.................+++++++..++... + +.|.+||..+++.+.++.. ...
T Consensus 230 -------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~ 301 (355)
T d2bbkh_ 230 -------FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHE 301 (355)
T ss_dssp -------ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEE
T ss_pred -------EEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCC
Confidence 11111111100000001122335689999999887764 2 3699999999999888764 345
Q ss_pred eeEEEEeCCCCc--EEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccC
Q 001178 877 STFLAFHPQDNN--IIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTN 928 (1131)
Q Consensus 877 i~~l~~s~~~~~--~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 928 (1131)
+.+++|+| |++ +++++..|+.|++||+++++.+.++.++...-..+.+.++
T Consensus 302 ~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 302 IDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 88999999 665 5667788999999999999999999877665566665544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=1.1e-12 Score=150.64 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=133.4
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC--
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-- 429 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-- 429 (1131)
.+.|.+|++ ++.. .|+.|.+||+.+++.... . ....+..|...|.++.|||||++||.++.
T Consensus 21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~-----~---------~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF-----L---------ENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE-----E---------CTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE-----E---------chhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 467889997 4553 578999999999986431 1 11246678889999999999999998854
Q ss_pred -------CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEecCC-----
Q 001178 430 -------KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQFEGH----- 496 (1131)
Q Consensus 430 -------d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~~~h----- 496 (1131)
++.+.+||+++++.. .+..|...+..+.|||||+ .++.. .++.+++|+ ..++.......+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 467899999997633 4678889999999999999 45554 467899999 555554433221
Q ss_pred -------------ccCeEEEeecccCCccEEEEEecCCe-EEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 497 -------------EAPVYSVCPHQKENIHFIFSTAVDGK-IKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 497 -------------~~~v~~~~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
.+....+.| ++||+.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------- 224 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------- 224 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence 122344556 456788888765543 444433110000 001112222333222221
Q ss_pred CCCCceEEEEeCCCCeeeEEEec----------ccCCceEEEEEeCCCCEEEE
Q 001178 563 KEGDSHLVEWNESEGALKRTYIG----------FRKKSAGVVQFDTTRNRILA 605 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~ 605 (1131)
.....+.+|++..+........ ..+..+..+.|.+++..++.
T Consensus 225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 276 (470)
T d2bgra1 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ 276 (470)
T ss_dssp -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence 1245678888876654322111 01123556778888765554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.50 E-value=1.3e-12 Score=150.12 Aligned_cols=371 Identities=10% Similarity=0.030 Sum_probs=210.2
Q ss_pred EEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc----CCceEEEEEeCCCCEEEEEEc---------CCcE
Q 001178 546 TMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR----KKSAGVVQFDTTRNRILAAGE---------DNQI 612 (1131)
Q Consensus 546 ~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~---------dg~i 612 (1131)
.+.|.+++.++... ++.+.+||..+++....+..+. ...+.++.||||+++|+.++. ++.+
T Consensus 21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 46788998877542 6679999999998877665442 236889999999999998754 5678
Q ss_pred EEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccc
Q 001178 613 KFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAV 692 (1131)
Q Consensus 613 ~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1131)
++||+.+++... +. .+...+..+.|||||+.+|.. .++.+.+|+..++........+....
T Consensus 95 ~l~d~~~~~~~~-l~--~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~--------------- 155 (470)
T d2bgra1 95 DIYDLNKRQLIT-EE--RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI--------------- 155 (470)
T ss_dssp EEEETTTTEECC-SS--CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred EEEECCCCcccc-cc--cCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCc---------------
Confidence 999999987543 33 233368899999999999986 56789999987763211111000000
Q ss_pred eecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEE
Q 001178 693 VTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVAR 772 (1131)
Q Consensus 693 ~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 772 (1131)
.+.+..+ |... ....+....
T Consensus 156 ---------------------------------------~~~g~~d-----~~~~----------------~~~~~~~~~ 175 (470)
T d2bgra1 156 ---------------------------------------IYNGITD-----WVYE----------------EEVFSAYSA 175 (470)
T ss_dssp ---------------------------------------EEESBCC-----HHHH----------------HHTSSSSBC
T ss_pred ---------------------------------------ccccccc-----eeee----------------eeecCCccc
Confidence 0000000 0000 001233345
Q ss_pred EEeecCCceEEEeeecce-eeEEeecCCCC-------------CCCCccceeeeceeecCCCCcccccCCC---------
Q 001178 773 LLYTNSGIGILALWSNGV-QKLWKWNRTEQ-------------NPSGKATAAVAPQHWQPSNGLLMTNDVP--------- 829 (1131)
Q Consensus 773 l~~s~~g~~l~~~~~dg~-i~iw~~~~~~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~--------- 829 (1131)
+.|||||+.|+....|.. +..|.+..... ...+.......+.+|+..++........
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHH
T ss_pred cEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCcccc
Confidence 678888888888776533 55554432111 1112222333456677666554332110
Q ss_pred CCCCCCeeEEEecCCCCEEEEEe--C-C--eEEEE--ECCCceeEEEEe------CCCC-----CeeEEEEeCC-CCcEE
Q 001178 830 ENAEDVVPCVALSKNDSYVMSAG--G-G--KVSLF--NMMNFKVMTTFM------SPPP-----ASTFLAFHPQ-DNNII 890 (1131)
Q Consensus 830 ~~~~~~i~~l~~s~dg~~la~~~--d-g--~i~vw--d~~~~~~~~~~~------~~~~-----~i~~l~~s~~-~~~~l 890 (1131)
......+..+.|.++++.++... . + .+.++ |..++....... .... ......++++ ++.++
T Consensus 256 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEE
Confidence 01234466788999988776543 1 2 23444 555555433211 0111 0112234442 34456
Q ss_pred EEEeCCCcEEEEEee-cceeEEeecccccCeeEEEEccCCCEE-EEEeCCC----cEEEEE--cCCCceeeeeeeecCCC
Q 001178 891 AIGMEDSTIQIYNVR-VDEVKTKLKGHQKHITGLAFSTNLNIL-VSSGSDA----QLIFWN--TDTWEKRKSIAIQLPAG 962 (1131)
Q Consensus 891 a~g~~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l-~s~~~Dg----~v~lwd--~~~~~~~~~~~~~~~~~ 962 (1131)
..+..||..+||... .+.....+..+...|..+ ++++++.+ +++..++ .-.||. +..+... .++.....
T Consensus 336 ~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~--~~lt~~~~ 412 (470)
T d2bgra1 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV--TCLSCELN 412 (470)
T ss_dssp EEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCE--EESSTTTS
T ss_pred EEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCce--eEeccccc
Confidence 677788877666554 233344444455667776 44455543 4444332 223444 4433221 12222222
Q ss_pred CCCCCceEEEEcCCCcEEEEEe----CCeEEEEeCCCcccceeeec
Q 001178 963 KLPVGETRVQFHSDQVRLLVNH----ETQLAIYDGSKMECIRQWVP 1004 (1131)
Q Consensus 963 ~~~~~v~~v~~s~d~~~l~~~~----d~~i~vwd~~~~~~~~~~~~ 1004 (1131)
.+...+..++|||||++++... .-.+.+|+..+++.++.+..
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 2336788999999999988643 23588999999988888754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=2.8e-13 Score=150.07 Aligned_cols=281 Identities=7% Similarity=-0.051 Sum_probs=184.3
Q ss_pred CCCcEEEEEEecCCCcEEEE--EcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCC
Q 001178 346 QGSSVVSMDFHPFHHTLLVV--GCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDG 421 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llas--g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg 421 (1131)
+.+....++.+++++...++ ...+| .|.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 44555666778888753333 34444 477779998887652 2334333 58999999
Q ss_pred CEEEEEe----------CCCeEEEEEecCCCccceeeeeecCc-------CCeeEEEEecCCCceEEEEEcCCCcEEEEe
Q 001178 422 NFIGVAF----------TKHLIHLYTYQGSNDLCQSLEIDAHV-------GGVNDLAFSYPNKQLCIVTCGDDKLIRVWD 484 (1131)
Q Consensus 422 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~~~~h~-------~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd 484 (1131)
+.|++++ .|++|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+||
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d 152 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS 152 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence 9998764 367899999999875542 22221 22346899999995 334445689999999
Q ss_pred -CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEec------CCCceEEEEEEccCCCEEE
Q 001178 485 -LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYD------APGLWCTTMLYSADGSRLF 557 (1131)
Q Consensus 485 -~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~~~v~~~~~s~~g~~l~ 557 (1131)
.+++.+..+..+..... .+.+ ...+++.+.||.+.+|++.......... .+...+....+.+++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (368)
T d1mdah_ 153 VPGASDDQLTKSASCFHI----HPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227 (368)
T ss_dssp ETTTEEEEEEECSSCCCC----EEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred CCCCcEeEEeeccCcceE----ccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence 88888877765544322 1122 2467778889999999887655443321 2233445677788877665
Q ss_pred EEeecCCCCceEEEEeCCCCeeeEEEe--ccc---------CCceEEEEEeCCCCEEEEEEcC---------CcEEEEEc
Q 001178 558 SCGTSKEGDSHLVEWNESEGALKRTYI--GFR---------KKSAGVVQFDTTRNRILAAGED---------NQIKFWDM 617 (1131)
Q Consensus 558 ~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~---------~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~ 617 (1131)
.. .+.+++++...+....... ... ......+++++++..++....+ ..|.+||.
T Consensus 228 ~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 228 AV------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp CB------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred ec------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 54 4456666665544332211 000 0112347889998877765432 35999999
Q ss_pred CCCeEEEEEeccCCCCCcceEEEcCCCC-E-EEEEECCCcEEEEecCCCc
Q 001178 618 DNVNMLTSTEAEGGLPSLPRLRFNKEGN-L-LVVTTADQGIKILANADGL 665 (1131)
Q Consensus 618 ~~~~~~~~~~~~~~~~~i~~v~~sp~~~-~-l~~~~~dg~i~iw~~~~~~ 665 (1131)
.+++.+..+.... .+..++|+|||+ + ++++..++.|++||..+++
T Consensus 302 ~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 302 SVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 9999888776543 578999999997 3 4556678999999999883
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=1.4e-12 Score=144.41 Aligned_cols=291 Identities=7% Similarity=-0.041 Sum_probs=176.7
Q ss_pred EEEEEccCCCEEEEE-eecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----------cCCcEE
Q 001178 545 TTMLYSADGSRLFSC-GTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----------EDNQIK 613 (1131)
Q Consensus 545 ~~~~~s~~g~~l~~~-~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~ 613 (1131)
..++..++++..... ....++...+++||..+++.+..+..+.. ..++|+|||+++++.+ .|+.|+
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~ 99 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAGHSGSDFALASTSFARSAKGKRTDYVE 99 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEECTTSSCEEEEEEEETTTTSSSEEEEEE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceECCCCCEEEEEcccCccccccccCCeEE
Confidence 344567777764332 22344567899999999999988876543 3588999999888765 367899
Q ss_pred EEEcCCCeEEEEEeccCCC-----CCcceEEEcCCCCEEEEEE-CCCcEEEEecCCCchhhhhhhccccccccccccccc
Q 001178 614 FWDMDNVNMLTSTEAEGGL-----PSLPRLRFNKEGNLLVVTT-ADQGIKILANADGLRALRAIETRAYETSRASTEMKV 687 (1131)
Q Consensus 614 iwd~~~~~~~~~~~~~~~~-----~~i~~v~~sp~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1131)
+||..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.++. ....+..+...
T Consensus 100 v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~---------- 168 (368)
T d1mdah_ 100 VFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCF---------- 168 (368)
T ss_dssp EECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSSCC----------
T ss_pred EEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeeccCcc----------
Confidence 9999999998887654321 1235799999999998876 57999999988762 22111100000
Q ss_pred cCccceecccccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCc
Q 001178 688 PGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSA 767 (1131)
Q Consensus 688 ~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 767 (1131)
.+. +.
T Consensus 169 -------~~~--------------------------------------------------------------------~~ 173 (368)
T d1mdah_ 169 -------HIH--------------------------------------------------------------------PG 173 (368)
T ss_dssp -------CCE--------------------------------------------------------------------EE
T ss_pred -------eEc--------------------------------------------------------------------cC
Confidence 000 11
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCE
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSY 847 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~ 847 (1131)
.....+++++||..++....++....|.... .....+...+....+.+++..
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGA----------------------------QCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCC----------------------------CSCTTSCBCSCCEEETTTTEE
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeeeeec----------------------------ccccccccceeecccccCcEE
Confidence 1112233444444443333322222211100 000123334445666777654
Q ss_pred EEEEeCCeEEEEECCCceeEEEEe--CC----------CCCeeEEEEeCCCCcEEEEEeC-C--------CcEEEEEeec
Q 001178 848 VMSAGGGKVSLFNMMNFKVMTTFM--SP----------PPASTFLAFHPQDNNIIAIGME-D--------STIQIYNVRV 906 (1131)
Q Consensus 848 la~~~dg~i~vwd~~~~~~~~~~~--~~----------~~~i~~l~~s~~~~~~la~g~~-d--------g~I~iwd~~~ 906 (1131)
+.. .++.+.+++...+....... .. ......+++++ ++..+++... + ..|.+||..+
T Consensus 226 ~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 226 VWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 443 24556666665544332211 10 11234578899 5555544432 2 2599999999
Q ss_pred ceeEEeecccccCeeEEEEccCCCE--EEEEeCCCcEEEEEcCCCceeeee
Q 001178 907 DEVKTKLKGHQKHITGLAFSTNLNI--LVSSGSDAQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 907 ~~~~~~~~~h~~~V~~l~~s~dg~~--l~s~~~Dg~v~lwd~~~~~~~~~~ 955 (1131)
++.+..+.. ...+.+++|+|||+. ++++..|+.|++||..+++.....
T Consensus 304 ~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 304 GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 998887763 467899999999973 567778999999999998865443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.48 E-value=7.1e-13 Score=144.17 Aligned_cols=297 Identities=11% Similarity=0.049 Sum_probs=189.2
Q ss_pred EEEEecCCeEEEEeCCCCceeEEecC------------------------------CCceEEEEEEccCCCEEEEEeecC
Q 001178 514 IFSTAVDGKIKAWLYDNVGSRVDYDA------------------------------PGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 514 l~s~s~dg~i~~wd~~~~~~~~~~~~------------------------------~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
++|++.+|.|++|++.+.+.+..+.. |........++|||++|++...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~-- 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK-- 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence 56777889999998887766554321 1123444556799999988764
Q ss_pred CCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCC--EEEEEEcCC-----------------cEEEEEcCCCeEEE
Q 001178 564 EGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRN--RILAAGEDN-----------------QIKFWDMDNVNMLT 624 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg-----------------~i~iwd~~~~~~~~ 624 (1131)
.+.+|.++|+.+++..+.+.-........++|+|+++ +++..+.+. .+..+|..+.+...
T Consensus 92 -~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~ 170 (441)
T d1qnia2 92 -ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW 170 (441)
T ss_dssp -TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred -CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence 3789999999999988877654555788899999998 454444332 23558888888887
Q ss_pred EEeccCCCCCcceEEEcCCCCEEEEEECCCc-EEEEecCCCchhhhhhhccccccccccccccccCccceeccccccccc
Q 001178 625 STEAEGGLPSLPRLRFNKEGNLLVVTTADQG-IKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKA 703 (1131)
Q Consensus 625 ~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 703 (1131)
.+...+ ....+.|+|+|+++++++.+.. +..++..+.. ..
T Consensus 171 qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~-~~----------------------------------- 211 (441)
T d1qnia2 171 QVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRN-DR----------------------------------- 211 (441)
T ss_dssp EEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS-SB-----------------------------------
T ss_pred EEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcc-eE-----------------------------------
Confidence 777654 4688999999999998876532 1111111100 00
Q ss_pred ccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEE
Q 001178 704 ERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGIL 783 (1131)
Q Consensus 704 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 783 (1131)
..+.+.+ .-..+.++++|+++.
T Consensus 212 -----------------------------------d~i~v~n-----------------------~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 212 -----------------------------------DWVVVFN-----------------------VERIAAAVKAGNFKT 233 (441)
T ss_dssp -----------------------------------CEEEEEE-----------------------HHHHHHHHHTTCCBC
T ss_pred -----------------------------------EEEEeCC-----------------------ccceEEEecCCCEEE
Confidence 0000000 001223455666543
Q ss_pred EeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEEC
Q 001178 784 ALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNM 861 (1131)
Q Consensus 784 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~ 861 (1131)
. +.++.+.++... ....+.. ++ -......+.++|||+++++++ +++|.|||+
T Consensus 234 v-~~~~v~vvd~~~----------------------~~~v~~~-IP--vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 234 I-GDSKVPVVDGRG----------------------ESEFTRY-IP--VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp C-TTCCCCEEECSS----------------------SCSSEEE-EC--CBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred e-CCCCcEEEEccc----------------------CCceEEE-Ee--CCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence 3 223444443221 1111110 11 123356799999999998876 799999998
Q ss_pred CCcee-----------EEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecc----------eeEEee-----cc
Q 001178 862 MNFKV-----------MTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVD----------EVKTKL-----KG 915 (1131)
Q Consensus 862 ~~~~~-----------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~----------~~~~~~-----~~ 915 (1131)
.+... +.-.....-.....+|.+ ++..+.+...|..|..|++... ..+..+ .|
T Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~G 366 (441)
T d1qnia2 288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPG 366 (441)
T ss_dssp GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE
T ss_pred ehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCC
Confidence 75321 111111122345678999 8888999999999999998521 233333 58
Q ss_pred cccCeeEEEEccCCCEEEEEeC
Q 001178 916 HQKHITGLAFSTNLNILVSSGS 937 (1131)
Q Consensus 916 h~~~V~~l~~s~dg~~l~s~~~ 937 (1131)
|...+.+.+++|||++|++++.
T Consensus 367 H~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 367 HNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEETTTTSTTCCCCEEEEEES
T ss_pred CCccccccccCCCCcEEEecCc
Confidence 8888888999999999999943
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.34 E-value=2.3e-13 Score=148.08 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=166.3
Q ss_pred CCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeC-CCCCeeEEEEeCCCCc--EEEEEeCCC---------
Q 001178 832 AEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMS-PPPASTFLAFHPQDNN--IIAIGMEDS--------- 897 (1131)
Q Consensus 832 ~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~--~la~g~~dg--------- 897 (1131)
|........++|||++|.+.. ++.|.++|+.++++...+.. ....+..++|+| +++ +++..+.+.
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence 444556666789999998886 68899999999999888764 456799999999 565 444333332
Q ss_pred --------cEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeeeeeeecCCCCCCCCc
Q 001178 898 --------TIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA-QLIFWNTDTWEKRKSIAIQLPAGKLPVGE 968 (1131)
Q Consensus 898 --------~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg-~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 968 (1131)
.+..+|..+.+...++... +....++|+|||+++++.+.+. .+..++..+.......... ...
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-------n~p 220 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-------NVE 220 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-------EHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-------Ccc
Confidence 1344677777666665543 4578899999999988877653 3333343333322211111 122
Q ss_pred eEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEE-ecCCcEEEEECCCCceee--
Q 001178 969 TRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYAT-FTDGSIGVFDADSLRLRC-- 1045 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~-- 1045 (1131)
..+.++|+|+++.++.++.+.+++....+.+..+... .....+.+||||++++++ ..+++|.|||+++.....
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~ 296 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED 296 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc
Confidence 3446789999988888888888888877777766554 345788999999987665 478999999987643210
Q ss_pred EecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecC
Q 001178 1046 RIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPS 1094 (1131)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~ 1094 (1131)
.+......... ......++..+|.+ +++.+.+...|..|..|++.
T Consensus 297 ~~~~~~~~~~~---~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 297 KIELRDTIVAE---PELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp SSCGGGGEEEC---CBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHH
T ss_pred cCCcceEEEee---cccccCcccceecC-CceEEEcccccceEEEeccc
Confidence 01100101100 12224467789999 67889999999999999984
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=8.9e-09 Score=112.08 Aligned_cols=162 Identities=13% Similarity=0.114 Sum_probs=104.4
Q ss_pred CCeeEEEecCCCCEEEEEe--CCeEEEEECCCc-eeE--EEEe--CCCCCeeEEEEeCCCCcEE-EEEeCCCcEEEEEee
Q 001178 834 DVVPCVALSKNDSYVMSAG--GGKVSLFNMMNF-KVM--TTFM--SPPPASTFLAFHPQDNNII-AIGMEDSTIQIYNVR 905 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~-~~~--~~~~--~~~~~i~~l~~s~~~~~~l-a~g~~dg~I~iwd~~ 905 (1131)
..+.+++|+|||+++++++ .+.|.+|+.... ... .... ........++|+| +++++ ++...+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3477999999999999987 467888876532 222 2222 2356789999999 66665 555567899999997
Q ss_pred cceeEEe-----ec--------------ccccCeeEEEEccCCCEEEEEeC-C-----CcEEEEEcCCCceeeeeeeecC
Q 001178 906 VDEVKTK-----LK--------------GHQKHITGLAFSTNLNILVSSGS-D-----AQLIFWNTDTWEKRKSIAIQLP 960 (1131)
Q Consensus 906 ~~~~~~~-----~~--------------~h~~~V~~l~~s~dg~~l~s~~~-D-----g~v~lwd~~~~~~~~~~~~~~~ 960 (1131)
.++.... .. .+......+.++|||++|+++.. + ..|..|++..............
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 6532211 10 12223567899999999887643 2 2377777765332222211111
Q ss_pred CCCCCCCceEEEEcC-CCcEEEEE--eCCeEEEEeCCCc
Q 001178 961 AGKLPVGETRVQFHS-DQVRLLVN--HETQLAIYDGSKM 996 (1131)
Q Consensus 961 ~~~~~~~v~~v~~s~-d~~~l~~~--~d~~i~vwd~~~~ 996 (1131)
..........++++| +|++|+++ .++.|.+|+++..
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111124557799998 89988886 4788999987543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.15 E-value=1.1e-08 Score=111.25 Aligned_cols=260 Identities=10% Similarity=0.012 Sum_probs=153.9
Q ss_pred CCCeeEEEecCCCCEEEEEeCCeEEEEECCCc-eeEEEE-eCCCCCeeEEEEeCCCCcEE--EEEe-CCCcEEEEEeecc
Q 001178 833 EDVVPCVALSKNDSYVMSAGGGKVSLFNMMNF-KVMTTF-MSPPPASTFLAFHPQDNNII--AIGM-EDSTIQIYNVRVD 907 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~-~~~~~~-~~~~~~i~~l~~s~~~~~~l--a~g~-~dg~I~iwd~~~~ 907 (1131)
...+..|+|++++++|.++..+.+..|.+... ...... .........+++++ +++.+ ++.. ..++|..+.+...
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCC
Confidence 44566799999999999988888888877642 222221 12234466778888 66633 3222 2355555543211
Q ss_pred -ee---------------E-EeecccccCeeEEEEccCCCEEEEEeC-CCcEEEEEcCCCceee-eeeeecCCCCCCCCc
Q 001178 908 -EV---------------K-TKLKGHQKHITGLAFSTNLNILVSSGS-DAQLIFWNTDTWEKRK-SIAIQLPAGKLPVGE 968 (1131)
Q Consensus 908 -~~---------------~-~~~~~h~~~V~~l~~s~dg~~l~s~~~-Dg~v~lwd~~~~~~~~-~~~~~~~~~~~~~~v 968 (1131)
.. . ..-+.....+.++.|+|||+++++++. ...|.+|+........ ....... ......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~--~~g~gP 195 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP--DPGDHP 195 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS--STTCCE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec--CCCCce
Confidence 00 0 001122234789999999998887764 4468888765433222 1112221 223678
Q ss_pred eEEEEcCCCcEEEEEe--CCeEEEEeCCCcccceeeec----------------CCCCCCCeEEEEEccCCCEEEEEec-
Q 001178 969 TRVQFHSDQVRLLVNH--ETQLAIYDGSKMECIRQWVP----------------QDVLSSPISSAAYSCNSQLIYATFT- 1029 (1131)
Q Consensus 969 ~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~~~~~~----------------~~~~~~~v~~i~~s~dg~~l~s~~~- 1029 (1131)
..++|+|+++++.+.. ++.|.+|++..+........ ..........+.++|||++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 8999999999988764 78899999876543221110 0011224567899999999988863
Q ss_pred -----CCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEE-ecCCcEEEEecCCCccccc
Q 001178 1030 -----DGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVG-LTDGSVKVIEPSETERKWG 1101 (1131)
Q Consensus 1030 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~-~~Dg~v~iW~~~~~~~~w~ 1101 (1131)
...|..|++.....+.......... .....+..+.++|.++.+|+++ ..++.|.+|++..+...+.
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~ 347 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTP------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRV 347 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECS------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEE------cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEE
Confidence 2237778776433222221111001 1112344588888667766555 5678999999977664443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.9e-08 Score=109.44 Aligned_cols=385 Identities=9% Similarity=0.036 Sum_probs=209.4
Q ss_pred EEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEeccc--CCceEEEEEeCCCCEEEEEEc---------CCcEEEEE
Q 001178 548 LYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFR--KKSAGVVQFDTTRNRILAAGE---------DNQIKFWD 616 (1131)
Q Consensus 548 ~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd 616 (1131)
.|.+++.++.. +.++.|.+||+.+++....+.... ...+....||||+++++...+ .+.+.++|
T Consensus 23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 46777776543 236789999998887654444322 224566789999999887643 56789999
Q ss_pred cCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecc
Q 001178 617 MDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTI 696 (1131)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1131)
+.++..............+....|||||+.+|... ++.|.+.+..++........+..
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~--------------------- 155 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE--------------------- 155 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT---------------------
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc---------------------
Confidence 99887655443333334567789999999998775 56777777654411100000000
Q ss_pred cccccccccccCCCCCCccccccCCCccccCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEee
Q 001178 697 TPVLSKAERVDRSSPARPSTILNGADSAARGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYT 776 (1131)
Q Consensus 697 sp~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 776 (1131)
..+..|- .-|-... +....-..+-||
T Consensus 156 ---------------------------------~~i~nG~-----~d~vyee----------------e~~~~~~a~~WS 181 (465)
T d1xfda1 156 ---------------------------------GVIYNGL-----SDWLYEE----------------EILKTHIAHWWS 181 (465)
T ss_dssp ---------------------------------TTEEEEE-----CCHHHHH----------------TTSSSSEEEEEC
T ss_pred ---------------------------------ceeeccc-----cchhhhh----------------hhccccceEEEC
Confidence 0000000 0011000 011112467799
Q ss_pred cCCceEEEeeec-ceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCe
Q 001178 777 NSGIGILALWSN-GVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGK 855 (1131)
Q Consensus 777 ~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~ 855 (1131)
|||+.|+....| ..+..+.+..... .....+..+.+..-|..-. ...
T Consensus 182 PDgk~iaf~~~D~s~V~~~~~~~~~~-----------------------------~~~p~~~~~~Yp~~G~~np---~~~ 229 (465)
T d1xfda1 182 PDGTRLAYAAINDSRVPIMELPTYTG-----------------------------SIYPTVKPYHYPKAGSENP---SIS 229 (465)
T ss_dssp TTSSEEEEEEEECTTSCEEEECCCSS-----------------------------SSSCCCEEEECCBTTSCCC---EEE
T ss_pred CCCCeEEEEEecccccceeecccccc-----------------------------cccceeeeeeccccCCCCC---cee
Confidence 999999987653 4454444321100 0111122222221111000 124
Q ss_pred EEEEECCCceeEEEEeC------CCCCeeEEEEeCCCCcEEEEEeC-C---CcEEEEEeecceeEEeeccccc-C----e
Q 001178 856 VSLFNMMNFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGME-D---STIQIYNVRVDEVKTKLKGHQK-H----I 920 (1131)
Q Consensus 856 i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~-d---g~I~iwd~~~~~~~~~~~~h~~-~----V 920 (1131)
+.++|+.++........ ....+..+.|++ ++++++.... + ..|.++|..++++...+..+.. . -
T Consensus 230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~ 308 (465)
T d1xfda1 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (465)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred EEEEecCCCcEEEEEeccCcCccccceeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccC
Confidence 77788876654332221 122367889999 7776665433 2 2578889888877665543322 1 2
Q ss_pred eEEEEccCCCEEEE---EeCCC--cEEEEEcCCCce--eeeeeeecCCCCCCCCceE-EEEcCCCcEEEE-Ee-----CC
Q 001178 921 TGLAFSTNLNILVS---SGSDA--QLIFWNTDTWEK--RKSIAIQLPAGKLPVGETR-VQFHSDQVRLLV-NH-----ET 986 (1131)
Q Consensus 921 ~~l~~s~dg~~l~s---~~~Dg--~v~lwd~~~~~~--~~~~~~~~~~~~~~~~v~~-v~~s~d~~~l~~-~~-----d~ 986 (1131)
....|++||+.++. .-.+| .+....+..... .......+..+. -.|.. ++|+.+++.+.. +. ..
T Consensus 309 ~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~--w~V~~i~~~d~~~~~vyF~a~~~~p~~~ 386 (465)
T d1xfda1 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (465)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC--ceEEEEEEEcCCCCEEEEEEeCCCCCce
Confidence 34689999985432 22232 344443322110 001111111221 23444 468888887764 32 23
Q ss_pred eEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC---CcEEEEECCCCceeeEec
Q 001178 987 QLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD---GSIGVFDADSLRLRCRIA 1048 (1131)
Q Consensus 987 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~ 1048 (1131)
+++-.++..+.....+...........++.|||||++++..... -.+.+++..+++.+..+.
T Consensus 387 hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 35555555444333332222224567799999999998866533 468888888888887775
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.07 E-value=3.6e-08 Score=104.25 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=157.8
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEE
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVA 416 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 416 (1131)
+.+++..+.-...+..++++|||+ |+++...+++|..||....... +......+.+++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla 74 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA 74 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEE
Confidence 344555565555799999999998 7889888999988886643221 224456799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEe-c-
Q 001178 417 WSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQF-E- 494 (1131)
Q Consensus 417 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~- 494 (1131)
|+|||+++++...++.+..|+......................+++.++++ ++++.+.++.+..+|..+...... .
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecC
Confidence 999999999998888898888876443222111223455689999999998 788888888888888433332211 1
Q ss_pred ---------CCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeE--EecCCCceEEEEEEccCCCEEEEEeecC
Q 001178 495 ---------GHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRV--DYDAPGLWCTTMLYSADGSRLFSCGTSK 563 (1131)
Q Consensus 495 ---------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 563 (1131)
........+.+ .. +..+++.+..+.|..++........ ...........++++++|++.++...
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~-- 227 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-- 227 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT--
T ss_pred CccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC--
Confidence 11122344544 22 3466677788888888876543322 11112233567999999997766543
Q ss_pred CCCceEEEEeCCCCeeeEEEecc-cCCceEEEEE---eCCCCEEEEEEcC
Q 001178 564 EGDSHLVEWNESEGALKRTYIGF-RKKSAGVVQF---DTTRNRILAAGED 609 (1131)
Q Consensus 564 ~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~---s~~~~~l~~~~~d 609 (1131)
++.|..++.. ++........ .....++++| ++|++.|++++..
T Consensus 228 --~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 --YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 6789999865 4443333322 1224778999 6677878776554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=3.8e-08 Score=102.24 Aligned_cols=238 Identities=12% Similarity=0.124 Sum_probs=143.5
Q ss_pred eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEEecCCCcccee
Q 001178 371 EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH---LIHLYTYQGSNDLCQS 447 (1131)
Q Consensus 371 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~ 447 (1131)
.|.|.|.+.+.... +..+...+.+-+|||||+.||...... .+.+.+..++...
T Consensus 20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--- 76 (269)
T d2hqsa1 20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 76 (269)
T ss_dssp EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence 57788876544332 334456788999999999999875543 4666666665422
Q ss_pred eeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEE-
Q 001178 448 LEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIK- 524 (1131)
Q Consensus 448 ~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~- 524 (1131)
.+..+.+......|+|||+.+ +.....++...++. ....................+.+..+ ..+++...+|...
T Consensus 77 -~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i 153 (269)
T d2hqsa1 77 -QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQV 153 (269)
T ss_dssp -EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEE
T ss_pred -EEeeeecccccceecCCCCee-eEeeecCCccceeecccccccceeeeeccccccccccccccc-cceecccccCCceE
Confidence 355677889999999999963 33333343333333 22222233323333333334433332 3455555566544
Q ss_pred -EEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE
Q 001178 525 -AWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI 603 (1131)
Q Consensus 525 -~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 603 (1131)
..++..... ..............++|+++.++..+. ..+...+.+.+...+... ... .........|+|||+.|
T Consensus 154 ~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~-~~~~~~i~~~~~~~~~~~-~~~--~~~~~~~p~~SPDG~~i 228 (269)
T d2hqsa1 154 YKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS-NGGQQHIAKQDLATGGVQ-VLS--STFLDETPSLAPNGTMV 228 (269)
T ss_dssp EEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEE-CSSCEEEEEEETTTCCEE-ECC--CSSSCEEEEECTTSSEE
T ss_pred eeeecccccc-eeeecccccccccccccccceeEEEee-cCCceeeeEeecccccce-Eee--cCccccceEECCCCCEE
Confidence 445544332 233444556778899999999998875 233556777776655442 222 22255678899999988
Q ss_pred EEEEc---CCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 604 LAAGE---DNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 604 ~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
+..+. ...|+++++..+....... .. ..+...+|+|
T Consensus 229 ~f~s~~~~~~~l~~~~~dg~~~~~lt~-~~--g~~~~p~WSP 267 (269)
T d2hqsa1 229 IYSSSQGMGSVLNLVSTDGRFKARLPA-TD--GQVKFPAWSP 267 (269)
T ss_dssp EEEEEETTEEEEEEEETTSCCEEECCC-SS--SEEEEEEECC
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEeC-CC--CcEEeEEeCC
Confidence 76553 3468899998776544332 22 2567788888
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=7.8e-08 Score=99.82 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=146.3
Q ss_pred cceeeeccCCCcEEEEEEecCCCcEEEEEcCCC--eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEE
Q 001178 338 RAVACTMHQGSSVVSMDFHPFHHTLLVVGCGDG--EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRV 415 (1131)
Q Consensus 338 ~~~~~~~~h~~~V~~~~fspdg~~llasg~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 415 (1131)
........+...+.+-+|||||++|+.+....+ .+.+.+..++... .+..+.+.+...
T Consensus 29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 88 (269)
T d2hqsa1 29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------QVASFPRHNGAP 88 (269)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------EEECCSSCEEEE
T ss_pred CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--------------------EEeeeecccccc
Confidence 344444567788899999999998655554444 4666666555432 244667888999
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEE
Q 001178 416 AWSPDGNFIGVAFT-KHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQ 492 (1131)
Q Consensus 416 ~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~ 492 (1131)
.|||||+.++.... ++...++......... .....+........+++++.. .+++...++...+|. ..+.....
T Consensus 89 ~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~~~ 165 (269)
T d2hqsa1 89 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQR 165 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCEE
T ss_pred eecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeeccccccee
Confidence 99999999887654 3333333333322111 123334555666778888875 455555666555554 55555555
Q ss_pred ecCCccCeEEEeecccCCccEEEEEe-cCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEE
Q 001178 493 FEGHEAPVYSVCPHQKENIHFIFSTA-VDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVE 571 (1131)
Q Consensus 493 ~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~i 571 (1131)
+..+........|++ ++..++..+ ..+...+|..+...................|+|||+.|+..+. ..+...|++
T Consensus 166 ~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~-~~~~~~l~~ 242 (269)
T d2hqsa1 166 ITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-QGMGSVLNL 242 (269)
T ss_dssp CCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-ETTEEEEEE
T ss_pred eeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc-CCCCcEEEE
Confidence 655666666666754 455665554 4455555555544444444455556678899999999987764 334678999
Q ss_pred EeCCCCeeeEEEecccCCceEEEEEeC
Q 001178 572 WNESEGALKRTYIGFRKKSAGVVQFDT 598 (1131)
Q Consensus 572 wd~~~~~~~~~~~~~~~~~v~~~~~s~ 598 (1131)
+++..+... .+... ...+...+|+|
T Consensus 243 ~~~dg~~~~-~lt~~-~g~~~~p~WSP 267 (269)
T d2hqsa1 243 VSTDGRFKA-RLPAT-DGQVKFPAWSP 267 (269)
T ss_dssp EETTSCCEE-ECCCS-SSEEEEEEECC
T ss_pred EECCCCCEE-EEeCC-CCcEEeEEeCC
Confidence 999866554 34432 33677788988
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=1.1e-06 Score=91.11 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=161.7
Q ss_pred cceEEEEeecCCceEEEeeecceeeEEeecCCCCCCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCC-C
Q 001178 768 SKVARLLYTNSGIGILALWSNGVQKLWKWNRTEQNPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKND-S 846 (1131)
Q Consensus 768 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~ 846 (1131)
.....++++++|+.+++-..+..|++|+.+ |..... +.. .+ ...+.......+++..+. .
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~-----~~~-~~------~~~~~~~~p~~~~~~~~~~~ 83 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQ-----FGE-CG------KRDSQLLYPNRVAVVRNSGD 83 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEE-----ECC-BS------SSTTCBSSEEEEEEETTTTE
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEE-----ecc-cC------CCcccccccccccccccccc
Confidence 345789999999977776667888888632 221111 000 00 000122234556665554 4
Q ss_pred EEEEEe--CCeEEEEECCCceeEEEEe-CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEee--cccccCee
Q 001178 847 YVMSAG--GGKVSLFNMMNFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKL--KGHQKHIT 921 (1131)
Q Consensus 847 ~la~~~--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~--~~h~~~V~ 921 (1131)
++++.. ++.|.+++.. ++....+. ........+++.+ ++.++++....+.+.+++. +++.+..+ ..+.....
T Consensus 84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~ 160 (279)
T d1q7fa_ 84 IIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN 160 (279)
T ss_dssp EEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE
T ss_pred cceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccc
Confidence 444443 4678888764 55555554 3345678899998 7888887777788888874 45555554 44667788
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccc
Q 001178 922 GLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECI 999 (1131)
Q Consensus 922 ~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~ 999 (1131)
.+++.++++.+++....+.|++|+..... .. .............+++.++|..+++.. ++.|.+|+. +|+.+
T Consensus 161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~----~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~ 234 (279)
T d1q7fa_ 161 GVVVNDKQEIFISDNRAHCVKVFNYEGQY-LR----QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 234 (279)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTCCE-EE----EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred eeeeccceeEEeeeccccceeeeecCCce-ee----eecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEE
Confidence 99999999999998889999999976532 11 111111224568899999999777743 456999984 57777
Q ss_pred eeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCc
Q 001178 1000 RQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLR 1042 (1131)
Q Consensus 1000 ~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1042 (1131)
..+..... ....+.+++.+||.+++ ++.++.|++|......
T Consensus 235 ~~~~~~~~-~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 235 SALESKVK-HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEESSC-CSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred EEEeCCCC-CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 66654321 34678999999997554 5678999999987664
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=1.8e-07 Score=96.17 Aligned_cols=241 Identities=8% Similarity=-0.026 Sum_probs=150.9
Q ss_pred cCCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 345 HQGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 345 ~h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+......++++++|..+++..+..+.|..++..+...... ...+ ......++++++|+++
T Consensus 11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~ 71 (260)
T d1rwia_ 11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVY 71 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEE
T ss_pred CCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEE
Confidence 45567799999999984444445567777777654432210 0111 2335678999999988
Q ss_pred EEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEec-CCccCeEEE
Q 001178 425 GVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFE-GHEAPVYSV 503 (1131)
Q Consensus 425 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~h~~~v~~~ 503 (1131)
++....+.+++++-.++..+. .. .......++++.++++ ++++-.....+..++..+.....+. .-......+
T Consensus 72 v~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i 145 (260)
T d1rwia_ 72 VTDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 145 (260)
T ss_dssp EEETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEE
T ss_pred Eeeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCccee
Confidence 877766666666544433221 11 2234578999999998 6676666777888885444433332 222345677
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEE
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTY 583 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 583 (1131)
++.+ +++++++...++.|..++.+.................+++.++|+++++... .+.|..++..... ...+
T Consensus 146 ~~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~-~~~~ 218 (260)
T d1rwia_ 146 AVDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTT-STVL 218 (260)
T ss_dssp EECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSC-CEEC
T ss_pred eecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCe-EEEE
Confidence 7754 5578888888899999998765444332334445789999999987776643 6778888765432 2232
Q ss_pred ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEc
Q 001178 584 IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDM 617 (1131)
Q Consensus 584 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 617 (1131)
....-.....++++++++.+++-..+++|+.++.
T Consensus 219 ~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 219 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred ccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 2222224667999998887776566666665543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.85 E-value=1.5e-06 Score=90.08 Aligned_cols=243 Identities=12% Similarity=0.100 Sum_probs=165.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEecCCCccceeeee---ecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCC
Q 001178 411 SVSRVAWSPDGNFIGVAFTKHLIHLYTYQGSNDLCQSLEI---DAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSG 487 (1131)
Q Consensus 411 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~ 487 (1131)
....++++++|+.+++-..++.|++||.+ |+.+...... .+....-..+++.++....+++..+.++.|.+++..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988887788899999965 3433322111 1112234567777665543444455667888888888
Q ss_pred ceeEEecC-CccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEe--cCCCceEEEEEEccCCCEEEEEeecCC
Q 001178 488 RKLFQFEG-HEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDY--DAPGLWCTTMLYSADGSRLFSCGTSKE 564 (1131)
Q Consensus 488 ~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~ 564 (1131)
.....+.. .......+++. +++.++++....+.+.+++.+. +....+ ..+......+++.++++.+++...
T Consensus 103 ~~~~~~~~~~~~~p~~~avd--~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--- 176 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--- 176 (279)
T ss_dssp CEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred cceeecCCCcccccceeccc--cCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc---
Confidence 88777642 34556677764 4557777777777888887543 333333 234456788999999987777654
Q ss_pred CCceEEEEeCCCCeeeEEEecc-cCCceEEEEEeCCCCEEEEEE-cCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcC
Q 001178 565 GDSHLVEWNESEGALKRTYIGF-RKKSAGVVQFDTTRNRILAAG-EDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNK 642 (1131)
Q Consensus 565 ~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp 642 (1131)
.+.|++||. +|+.+..+... .......+++.++|+.+++-. .++.|.+|+. +|+.+..+...........+++.|
T Consensus 177 -~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 -AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp -GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred -ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 778999996 46667666421 122467799999998776644 3457999984 577777776554444568899999
Q ss_pred CCCEEEEEECCCcEEEEecCCC
Q 001178 643 EGNLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 643 ~~~~l~~~~~dg~i~iw~~~~~ 664 (1131)
+|.+ +++..++.|++|.....
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSCC
T ss_pred CCcE-EEEeCCCeEEEEEeeee
Confidence 9865 55668899999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.83 E-value=1.2e-06 Score=92.44 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=155.5
Q ss_pred CcEEEEEEecCCCcEEEEEcC-------CCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCC
Q 001178 348 SSVVSMDFHPFHHTLLVVGCG-------DGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPD 420 (1131)
Q Consensus 348 ~~V~~~~fspdg~~llasg~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd 420 (1131)
......+|.|+|+ ++++... +|.|..||..++..... ... ......+.-..++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~------~~~---------~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI------CKP---------EVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE------ECC---------EETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEE------ECC---------ccccCCCcceeEEEeCC
Confidence 3467789999998 5554332 36788899887764321 000 01111234678999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCccceeeeeecCc-CCeeEEEEecCCCceEEEEEcC---------------CCcEEEEe
Q 001178 421 GNFIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHV-GGVNDLAFSYPNKQLCIVTCGD---------------DKLIRVWD 484 (1131)
Q Consensus 421 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~V~~l~~s~d~~~~~l~s~s~---------------d~~i~iwd 484 (1131)
|..|+++...+.|...+.+++..........+.. ...+++++.++|. +.++-.. ++.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888877788888887653211111111111 1367899999998 5665321 23455555
Q ss_pred CCCceeEEecCCccCeEEEeecccCCc---cEEEEEecCCeEEEEeCCCCceeE------EecC-CCceEEEEEEccCCC
Q 001178 485 LSGRKLFQFEGHEAPVYSVCPHQKENI---HFIFSTAVDGKIKAWLYDNVGSRV------DYDA-PGLWCTTMLYSADGS 554 (1131)
Q Consensus 485 ~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~------~~~~-~~~~v~~~~~s~~g~ 554 (1131)
..|+..... ..-...+.++|.+..++ .+.++-+..+.|..|++....... .+.. .......+++.++|+
T Consensus 160 ~dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 160 TDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp TTSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ecCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 556544333 23334567888765543 244455778889888876543322 1111 122456899999999
Q ss_pred EEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEE-EEEEcCCcEEEEEcCC
Q 001178 555 RLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRI-LAAGEDNQIKFWDMDN 619 (1131)
Q Consensus 555 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~ 619 (1131)
..++... .+.|.+||...++.+..+.... ...++++|.|+++.| ++.+.+|.|+.+++..
T Consensus 239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~-~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcC----CCEEEEEeCCCCEEEEEEECCC-CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 8776543 7889999998888777666533 367889999998755 5556678888887653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=3e-07 Score=94.46 Aligned_cols=240 Identities=9% Similarity=0.040 Sum_probs=152.3
Q ss_pred CCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE
Q 001178 833 EDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK 910 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~ 910 (1131)
......++++++|+..++.. .+.+..++..+................+++++ +++++++....+.+++++-.+...+
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEE
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceee
Confidence 44568999999999766654 46777776654433322222234567899999 7888877777777776655544444
Q ss_pred EeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-eCCeEE
Q 001178 911 TKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-HETQLA 989 (1131)
Q Consensus 911 ~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~d~~i~ 989 (1131)
....+ .....++++.++++++++-..+..+..++......... ...+ ......+++++++.++++. .++.|.
T Consensus 92 ~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~--~~~p~~i~~~~~g~~~v~~~~~~~i~ 164 (260)
T d1rwia_ 92 LPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----PFTG--LNDPDGVAVDNSGNVYVTDTDNNRVV 164 (260)
T ss_dssp CCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC----CCCS--CCSCCEEEECTTCCEEEEEGGGTEEE
T ss_pred eeeee-eeecccccccccceeEeeccccccccccccccceeeee----eecc--cCCcceeeecCCCCEeeecccccccc
Confidence 33332 34578999999999888777777777777665332111 1111 1445789999999877664 467899
Q ss_pred EEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCccccEEE
Q 001178 990 IYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVV 1069 (1131)
Q Consensus 990 vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v 1069 (1131)
.++............. -.....+++.++|+++++....+.|..++...... ..+.. ...-.|..+
T Consensus 165 ~~d~~~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~-----------~~~~~P~~i 229 (260)
T d1rwia_ 165 KLEAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF-----------TGLNTPLAV 229 (260)
T ss_dssp EECTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCC-----------CSCCCEEEE
T ss_pred ccccccceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEcc-----------CCCCCeEEE
Confidence 9997754433322222 45678999999999888777788898888654432 11111 111245678
Q ss_pred EEcCCCCCeEEEEecCCcEEEEecCCCcc
Q 001178 1070 TSHPQEPNQLAVGLTDGSVKVIEPSETER 1098 (1131)
Q Consensus 1070 ~~~p~~~~~l~s~~~Dg~v~iW~~~~~~~ 1098 (1131)
++.+ +++++++-..+++| +.+.+-+.
T Consensus 230 ~~d~-~g~l~vad~~~~rI--~~i~~~~~ 255 (260)
T d1rwia_ 230 AVDS-DRTVYVADRGNDRV--VKLTSLEH 255 (260)
T ss_dssp EECT-TCCEEEEEGGGTEE--EEECCCGG
T ss_pred EEeC-CCCEEEEECCCCEE--EEEeCCCC
Confidence 8888 56787776666654 45555544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.83 E-value=3.8e-07 Score=96.08 Aligned_cols=235 Identities=10% Similarity=0.026 Sum_probs=149.4
Q ss_pred CCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeeccee-EE
Q 001178 834 DVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEV-KT 911 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~-~~ 911 (1131)
..+..++++|||+++++.. +++|..|+.... ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578999999999888877 788988886643 233444557799999999 888999988889998888764321 11
Q ss_pred ee--cccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeee--cCCCCCC--CCceEEEEcCCCcEEEEE--
Q 001178 912 KL--KGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQ--LPAGKLP--VGETRVQFHSDQVRLLVN-- 983 (1131)
Q Consensus 912 ~~--~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~--~~~~~~~--~~v~~v~~s~d~~~l~~~-- 983 (1131)
.+ .........+++.++|+++++.+.++.+..++...+.......-. ....... .....+.++ +..+..+
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 11 224456889999999999999888998888888875432211110 0011111 233445554 4445443
Q ss_pred eCCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCCCCCc
Q 001178 984 HETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPNSSQT 1063 (1131)
Q Consensus 984 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1131)
..+.|+.++.............. .......++|++||++.++...++.|..|+... +........ ...
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~----------~~~ 250 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAE----------QGV 250 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGG----------GTC
T ss_pred CCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecC----------CCC
Confidence 47788888877544333221110 023456799999999888887889999998753 322222111 111
Q ss_pred cccEEEEEcCC--CCCeEEEEecC
Q 001178 1064 VFPLVVTSHPQ--EPNQLAVGLTD 1085 (1131)
Q Consensus 1064 v~~~~v~~~p~--~~~~l~s~~~D 1085 (1131)
..+..++|... |++.|..++..
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEcCCCCCCCEEEEECCC
Confidence 33567899432 55556555443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.83 E-value=1.4e-06 Score=91.87 Aligned_cols=242 Identities=14% Similarity=0.107 Sum_probs=152.7
Q ss_pred CeeEEEecCCCCEEEEEe--------CCeEEEEECCCceeEEEEeC----CCCCeeEEEEeCCCCcEEEEEeCCCcEEEE
Q 001178 835 VVPCVALSKNDSYVMSAG--------GGKVSLFNMMNFKVMTTFMS----PPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~--------dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~~~~~la~g~~dg~I~iw 902 (1131)
....++|.++|++.++.. +|+|..||..++........ .......++|.+ ++.+++++.....|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence 356789999999887643 35788999988765444321 123467899999 77777777777778888
Q ss_pred EeecceeEEeeccccc----CeeEEEEccCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeecCCCC
Q 001178 903 NVRVDEVKTKLKGHQK----HITGLAFSTNLNILVSSGS---------------DAQLIFWNTDTWEKRKSIAIQLPAGK 963 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~----~V~~l~~s~dg~~l~s~~~---------------Dg~v~lwd~~~~~~~~~~~~~~~~~~ 963 (1131)
+.+............+ ..+.+++.++|++.++-.. +|.|..++.+. +. .......
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~-~~~~~~~---- 171 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM-IQVDTAF---- 171 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE-EEEEEEE----
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce-eEeeCCc----
Confidence 8765433221111111 3578999999998887432 23444444433 11 1111110
Q ss_pred CCCCceEEEEcCCCc----EEEEE--eCCeEEEEeCCCccccee---eecC-CCCCCCeEEEEEccCCCEEEEEecCCcE
Q 001178 964 LPVGETRVQFHSDQV----RLLVN--HETQLAIYDGSKMECIRQ---WVPQ-DVLSSPISSAAYSCNSQLIYATFTDGSI 1033 (1131)
Q Consensus 964 ~~~~v~~v~~s~d~~----~l~~~--~d~~i~vwd~~~~~~~~~---~~~~-~~~~~~v~~i~~s~dg~~l~s~~~dg~i 1033 (1131)
.....++|+|++. .|.++ ..+.|+.|++.....+.. +... .........+++..+|++.++....+.|
T Consensus 172 --~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 172 --QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp --SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred --ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 2335788988764 45554 367888888754322221 1111 1112346789999999988887778999
Q ss_pred EEEECCCCceeeEecCCccccCCCCCCCCccccEEEEEcCCCCCeEEEEecCCcEEEEecCCCc
Q 001178 1034 GVFDADSLRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQEPNQLAVGLTDGSVKVIEPSETE 1097 (1131)
Q Consensus 1034 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~~Dg~v~iW~~~~~~ 1097 (1131)
.+||.++++....+.... ..+.+++|.|+...++++.+..|+|.-.++....
T Consensus 250 ~~~dp~~g~~~~~i~~p~------------~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPF------------EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECTTCBSCSEEEECSS------------SCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEEeCCCCEEEEEEECCC------------CCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 999999888777665322 1244689988443477777888888777765443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.8e-06 Score=96.46 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=88.6
Q ss_pred EecCCeEEEEeCCCCceeEEecCCC---ceEEEEEEccCCCEEEEEeecC-----CCCceEEEEeCCCCeeeEEEecc-c
Q 001178 517 TAVDGKIKAWLYDNVGSRVDYDAPG---LWCTTMLYSADGSRLFSCGTSK-----EGDSHLVEWNESEGALKRTYIGF-R 587 (1131)
Q Consensus 517 ~s~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~-~ 587 (1131)
-..+|.|.+||+.+++....+.... ..+....+|||+++++...... ...+.+.++|+.++......... .
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC
Confidence 3457788999988777655443322 2567788999999988765211 23568999999988764432211 1
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCC----------------CCcceEEEcCCCCEEEEEE
Q 001178 588 KKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGL----------------PSLPRLRFNKEGNLLVVTT 651 (1131)
Q Consensus 588 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------~~i~~v~~sp~~~~l~~~~ 651 (1131)
...+....|||||+.++... ++.|++.+..++..++........ ..-..+.|||||+.||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 22445578999999988876 567888888877665544322110 0113677999999998764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=8.9e-06 Score=85.80 Aligned_cols=235 Identities=12% Similarity=0.089 Sum_probs=147.8
Q ss_pred CCCeeEEEecCCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC----CcEEEEEeecc
Q 001178 833 EDVVPCVALSKNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED----STIQIYNVRVD 907 (1131)
Q Consensus 833 ~~~i~~l~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~I~iwd~~~~ 907 (1131)
...+..++|.++|++.++-. .+.|..|+..+.+....+.........+++++ +++++++...+ +.+...+..+.
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence 33456899999998665544 78899999988877766665666789999999 78887765432 23444444444
Q ss_pred eeEEeecc--cccCeeEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcE
Q 001178 908 EVKTKLKG--HQKHITGLAFSTNLNILVSSGS------DAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVR 979 (1131)
Q Consensus 908 ~~~~~~~~--h~~~V~~l~~s~dg~~l~s~~~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 979 (1131)
........ -......+++.++|++.++-.. -+.+..++.+...... ..... .....++|+||++.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~-~~~~~------~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNI------SVANGIALSTDEKV 190 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEE------SSEEEEEECTTSSE
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE-Eeecc------ceeeeeeeccccce
Confidence 33332221 1234678999999998776433 1235555544432211 11110 33467999999997
Q ss_pred EEEEe--CCeEEEEeCCCc-ccceee----ecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCcc
Q 001178 980 LLVNH--ETQLAIYDGSKM-ECIRQW----VPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAY 1052 (1131)
Q Consensus 980 l~~~~--d~~i~vwd~~~~-~~~~~~----~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1052 (1131)
|.++. .+.|+.|++... ...... ............+++.++|++.++....+.|.+||- .|+.+..+.....
T Consensus 191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence 77653 788999987642 222111 111111234678999999998888888999999995 7888888875432
Q ss_pred ccCCCCCCCCccccEEEEEcCCCCCeEEEEe
Q 001178 1053 MSQASPNSSQTVFPLVVTSHPQEPNQLAVGL 1083 (1131)
Q Consensus 1053 ~~~~~~~~~~~v~~~~v~~~p~~~~~l~s~~ 1083 (1131)
.+ +....+.+++|.|.. ..+++..
T Consensus 270 ~~------~~~~~~~~~~~~~~~-~~~~~t~ 293 (319)
T d2dg1a1 270 DE------GHMLRSTHPQFIPGT-NQLIICS 293 (319)
T ss_dssp GG------TCSCBCCEEEECTTS-CEEEEEE
T ss_pred CC------CcCceeeeEEEeCCC-CEEEEEc
Confidence 22 222344578998854 4444443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.69 E-value=1.7e-05 Score=83.55 Aligned_cols=233 Identities=11% Similarity=0.045 Sum_probs=149.3
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
.......++|.++|+ |+++-...+.|.-|+..+++... ...........++|++||++++
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~-------------------~~~~~~~~p~gla~~~dG~l~v 97 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLFV 97 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE-------------------EEeCCCCCeeEEEECCCCCEEE
Confidence 445667999999997 78887788999999988765432 1223445688999999999887
Q ss_pred EEeCC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEecC
Q 001178 426 VAFTK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEG 495 (1131)
Q Consensus 426 s~~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~ 495 (1131)
+...+ +.+...+..++.... ...-..-......+++.++|+ +.++... .+.+..++..++.+..+..
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~ 174 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ 174 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEee
Confidence 76432 234444444433221 111111123578899999998 5565432 2235555666665555443
Q ss_pred CccCeEEEeecccCCccEE-EEEecCCeEEEEeCCCCceeE--------EecCCCceEEEEEEccCCCEEEEEeecCCCC
Q 001178 496 HEAPVYSVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRV--------DYDAPGLWCTTMLYSADGSRLFSCGTSKEGD 566 (1131)
Q Consensus 496 h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~--------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 566 (1131)
.-...+.++|++ +++.| ++-+..+.|..|+++...... ...........+++.++|+..++... .
T Consensus 175 ~~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~ 248 (319)
T d2dg1a1 175 NISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----Q 248 (319)
T ss_dssp EESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----T
T ss_pred ccceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----C
Confidence 344567788865 44544 555778899999886543211 11111224568999999997776653 7
Q ss_pred ceEEEEeCCCCeeeEEEeccc-----CCceEEEEEeCCCCEEEEEEc
Q 001178 567 SHLVEWNESEGALKRTYIGFR-----KKSAGVVQFDTTRNRILAAGE 608 (1131)
Q Consensus 567 ~~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~ 608 (1131)
+.|.++|. +|+.+..+.... ...+.+++|.++...+++...
T Consensus 249 g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 249 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 89999995 688887775321 124678999988877776554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.50 E-value=8.1e-06 Score=84.56 Aligned_cols=235 Identities=10% Similarity=0.055 Sum_probs=127.1
Q ss_pred EEecC--CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeC-C
Q 001178 354 DFHPF--HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFT-K 430 (1131)
Q Consensus 354 ~fspd--g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d 430 (1131)
..||| |++++.+. +|.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 46899 99866664 5678888999887543 4456678899999999999987642 1
Q ss_pred -----CeEEEEEecCCCccceee---eeecCcCCeeEEEEecCCCceEEEEEcC------CCcEEEEeCCCceeEEecCC
Q 001178 431 -----HLIHLYTYQGSNDLCQSL---EIDAHVGGVNDLAFSYPNKQLCIVTCGD------DKLIRVWDLSGRKLFQFEGH 496 (1131)
Q Consensus 431 -----~~i~vwd~~~~~~~~~~~---~~~~h~~~V~~l~~s~d~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~h 496 (1131)
..|.+++..+++...... ............+|+|||+. ++.... ...+...+..+.........
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--IISTDAMQPFSSMTCLYRVENDGINFVPLNLG 140 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE--EEEECTTSSSTTCCEEEEEEGGGTEEEECCSC
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE--EEEEEccCCCccceeeeeecCCCceeEEecCC
Confidence 247777777765432110 01122234678899999994 444321 22344445444444333221
Q ss_pred ccCeEEEeecccCCccEEEEEecCC-----------eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 497 EAPVYSVCPHQKENIHFIFSTAVDG-----------KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 497 ~~~v~~~~~~~~~~~~~l~s~s~dg-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
......+ .+++..++....+. ....+....... ..............++++ .++... ..++
T Consensus 141 --~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 212 (281)
T d1k32a2 141 --PATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGH--RIYFIT-DIDG 212 (281)
T ss_dssp --SCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETT--EEEEEE-CTTS
T ss_pred --ccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeecc--ccceec-cccc
Confidence 1122211 12223333322211 111111111111 111222222334444444 344433 3345
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEE
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 624 (1131)
...|+++|+.++...+ +..... .....|+|||+.|+.. .++.|+++|+.+++...
T Consensus 213 ~~~l~~~d~~g~~~~~-lt~~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRK-HTSFTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SCEEEEEETTSCSCEE-CCCCCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred ccceEEEeCCCCceEE-eecCCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence 6789999988765543 332222 2334689999987764 46889999998887544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=0.00058 Score=70.28 Aligned_cols=223 Identities=6% Similarity=0.017 Sum_probs=144.5
Q ss_pred eEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 837 PCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 837 ~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.+..|++....|.-.+ .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .|.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3567877666565555 688999999988654 333 245688999998 7777764 454 58899998886543322
Q ss_pred --c--cccCeeEEEEccCCCEEEEEeCC----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--
Q 001178 915 --G--HQKHITGLAFSTNLNILVSSGSD----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH-- 984 (1131)
Q Consensus 915 --~--h~~~V~~l~~s~dg~~l~s~~~D----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-- 984 (1131)
. ....++.+.+.|+|++.++...+ +.-.+|.+..++..... ... .....++|+++++.+....
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~------~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADI------SIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEE------SSEEEEEECTTSCEEEEEETT
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-ecc------CCcceeeecCCCceEEEeecc
Confidence 1 12357889999999987765432 34466766665432211 111 3456789999999877754
Q ss_pred CCeEEEEeCCCc--cc---ceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCccccCCCCC
Q 001178 985 ETQLAIYDGSKM--EC---IRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSAYMSQASPN 1059 (1131)
Q Consensus 985 d~~i~vwd~~~~--~~---~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1059 (1131)
.+.|+.|++... .. ...+............+++..+|++.++.-..+.|..|| ..|+.+..+....
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~-------- 239 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG-------- 239 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC--------
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC--------
Confidence 678888887531 11 111222222245688999999999888777788999999 5688888886432
Q ss_pred CCCccccEEEEEcCCCCC-eEEEEec
Q 001178 1060 SSQTVFPLVVTSHPQEPN-QLAVGLT 1084 (1131)
Q Consensus 1060 ~~~~v~~~~v~~~p~~~~-~l~s~~~ 1084 (1131)
-.+.+++|--.+.+ +++|...
T Consensus 240 ----~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 240 ----KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp ----SBEEEEEEESTTSCEEEEEEBC
T ss_pred ----CceEEEEEeCCCCCEEEEEECC
Confidence 13457888643434 5555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.00061 Score=70.14 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=142.9
Q ss_pred EEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCC
Q 001178 351 VSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTK 430 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d 430 (1131)
.+..|++.+..|+.+--..+.|.-||..+++... |. ....+.++++.++|.+++++ .+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va~-~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIAS-DD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEEE-eC
Confidence 3567887655577776667899999998876432 11 23468899999999877754 44
Q ss_pred CeEEEEEecCCCccceeeeeec--CcCCeeEEEEecCCCceEEEEEcC----CCcEEEEe-CCCceeEEecCCccCeEEE
Q 001178 431 HLIHLYTYQGSNDLCQSLEIDA--HVGGVNDLAFSYPNKQLCIVTCGD----DKLIRVWD-LSGRKLFQFEGHEAPVYSV 503 (1131)
Q Consensus 431 ~~i~vwd~~~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~~~l~s~s~----d~~i~iwd-~~~~~~~~~~~h~~~v~~~ 503 (1131)
-+.++|..+++.. ....... ....++++.+.|+|+ +.++... .+.-.+|. ..++....+ ..-...+.+
T Consensus 79 -gl~~~d~~tg~~~-~l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLT-LHAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEE-EEECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEE
T ss_pred -ccEEeecccceee-EEeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEe-eccCCccee
Confidence 5889999987632 2211111 123588999999998 4444321 23445666 445433333 223345677
Q ss_pred eecccCCccEEEEEecCCeEEEEeCCCCce------e--EEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCC
Q 001178 504 CPHQKENIHFIFSTAVDGKIKAWLYDNVGS------R--VDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNES 575 (1131)
Q Consensus 504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~ 575 (1131)
+|++..+ .++++-+..+.|..++++.... . ............+++..+|++.++.-. .+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence 7765432 3556667788999888754221 1 122334456789999999987776543 678999995
Q ss_pred CCeeeEEEecccCCceEEEEEe-CCCCEEEEEE
Q 001178 576 EGALKRTYIGFRKKSAGVVQFD-TTRNRILAAG 607 (1131)
Q Consensus 576 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 607 (1131)
+|+.+..+.-... .+++++|. ++.+.|++.+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888875433 68889996 5666665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.18 E-value=5e-05 Score=78.30 Aligned_cols=215 Identities=12% Similarity=0.109 Sum_probs=112.3
Q ss_pred ccceeeeccCCCcEEEEEEecCCCcEEEEEcCC-----CeEEEEECCCCcccccccceeecccccccceeceeccCCCCC
Q 001178 337 PRAVACTMHQGSSVVSMDFHPFHHTLLVVGCGD-----GEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSIS 411 (1131)
Q Consensus 337 ~~~~~~~~~h~~~V~~~~fspdg~~llasg~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 411 (1131)
.++..+...+...+...+|||||++++.+...+ ..|.+++..+++....... ..........
T Consensus 30 ~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~-------------~~~~~~~~~~ 96 (281)
T d1k32a2 30 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF-------------SGKSTGRRMF 96 (281)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC-------------CEEEETTEEC
T ss_pred CCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec-------------CCCccCcccc
Confidence 344444445778899999999999866665433 2478888887765431000 0001122345
Q ss_pred EEEEEEcCCCCEEEEEeCC------CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCC-------
Q 001178 412 VSRVAWSPDGNFIGVAFTK------HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDK------- 478 (1131)
Q Consensus 412 V~~~~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~------- 478 (1131)
....+|+|||+.|+..... ..+...+..++.. ...+....... +.+++.. .++....+.
T Consensus 97 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 168 (281)
T d1k32a2 97 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF------VPLNLGPATHI-LFADGRR-VIGRNTFELPHWKGYR 168 (281)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE------EECCSCSCSEE-EEETTEE-EEEESCSCCTTSTTCC
T ss_pred ccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee------EEecCCcccee-eecCCCe-EEEeeccccceeeeec
Confidence 6778999999999876432 2345555554431 11233333343 4445543 344332221
Q ss_pred ----cEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeEEecCCCceEEEEEEccC
Q 001178 479 ----LIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSAD 552 (1131)
Q Consensus 479 ----~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 552 (1131)
...++............+........+. ++ ..+.....++ .|.++|+++............. ...|+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~--~~~~SpD 243 (281)
T d1k32a2 169 GGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYY--PRHLNTD 243 (281)
T ss_dssp STTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSC--EEEEEES
T ss_pred cCCcceeeeeccccceeeccCCccccceeeee--cc-ccceecccccccceEEEeCCCCceEEeecCCCcc--cccCcCC
Confidence 1111221111222222222333333332 22 2333333333 5666777765544322222223 3468999
Q ss_pred CCEEEEEeecCCCCceEEEEeCCCCeeeEE
Q 001178 553 GSRLFSCGTSKEGDSHLVEWNESEGALKRT 582 (1131)
Q Consensus 553 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 582 (1131)
|+.|+... ++.|+++|+.+++..+.
T Consensus 244 G~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 244 GRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred CCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 99998754 67899999988876543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.97 E-value=0.0004 Score=71.99 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=75.8
Q ss_pred EEEEc---cCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeC--CCCEEEEEEcCC----------
Q 001178 546 TMLYS---ADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDT--TRNRILAAGEDN---------- 610 (1131)
Q Consensus 546 ~~~~s---~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg---------- 610 (1131)
.+.+. +||+++++... .+.+|.+.|+.+.+..+.........+..++..+ +-.++++++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 45554 48999998764 4889999999999987766554444566666654 445777776532
Q ss_pred --------cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEECC
Q 001178 611 --------QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTAD 653 (1131)
Q Consensus 611 --------~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~d 653 (1131)
.+.++|..+++....+...+ ....+.++++|+++++.+.+
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 36788999999888877655 46789999999999988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.89 E-value=0.011 Score=57.79 Aligned_cols=260 Identities=8% Similarity=0.085 Sum_probs=150.5
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCC
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGN 645 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~ 645 (1131)
..++.+.|+.++..+..... ...+.-.+|..+.++.-+ ..++.+||+++.+.++...... .|.--.|-.+.
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~~- 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSSS-
T ss_pred CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCCC-
Confidence 55788889877654332221 223355788888777655 5689999999999999888765 46666776543
Q ss_pred EEEEEECCCcEEEEecCCCchhhhhhhccccccccccccccccCccceecccccccccccccCCCCCCccccccCCCccc
Q 001178 646 LLVVTTADQGIKILANADGLRALRAIETRAYETSRASTEMKVPGSAVVTTITPVLSKAERVDRSSPARPSTILNGADSAA 725 (1131)
Q Consensus 646 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~l~~~~~~~ 725 (1131)
.|+..+ +..|+-|++.......+.+..+..
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~------------------------------------------------- 144 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSS------------------------------------------------- 144 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGG-------------------------------------------------
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhccc-------------------------------------------------
Confidence 455443 457899998543222111111110
Q ss_pred cCCCCceeccccCCCCcceeeecccCCceeEEEEcCCCCCCccceEEEEeecCCceEEEeee-------cceeeEEeecC
Q 001178 726 RGIEKPRNLEDISDKTKPWELTEIVDPLQCRVVAMPESTDSASKVARLLYTNSGIGILALWS-------NGVQKLWKWNR 798 (1131)
Q Consensus 726 ~~~~~~~~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~iw~~~~ 798 (1131)
-...+|.....+++.++++..|= .|.+.+|..+.
T Consensus 145 ---------------------------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 145 ---------------------------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp ---------------------------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred ---------------------------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 01244555666667776665542 25566666554
Q ss_pred CCC-CCCCccceeeeceeecCCCCcccccCCCCCCCCCeeEEEecCCCCEEEEEeCCeEEEEECCCce---e---EE--E
Q 001178 799 TEQ-NPSGKATAAVAPQHWQPSNGLLMTNDVPENAEDVVPCVALSKNDSYVMSAGGGKVSLFNMMNFK---V---MT--T 869 (1131)
Q Consensus 799 ~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~---~---~~--~ 869 (1131)
... ..+|...+..+.+ +. +...+..-++|...+ ...+++.|.++.... . .+ .
T Consensus 186 ~~sQ~ieGhaa~F~~~~-------------~~-g~~~~~~lf~fa~r~-----~~~~kLhIiEig~~~~g~~~f~kk~vd 246 (327)
T d1utca2 186 KVSQPIEGHAASFAQFK-------------ME-GNAEESTLFCFAVRG-----QAGGKLHIIEVGTPPTGNQPFPKKAVD 246 (327)
T ss_dssp TEEEEECCSEEEEEEEC-------------CT-TCSSCEEEEEEEEEE-----TTEEEEEEEECSCCCTTCCCCCCEEEE
T ss_pred CcCccccceeeeeEEEE-------------cC-CCCCCceEEEEEECC-----CCCcEEEEEEcCCCccCCCCCcceeEE
Confidence 311 1122111111110 00 111111222221110 013679999886521 1 11 1
Q ss_pred Ee----CCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEE
Q 001178 870 FM----SPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIF 943 (1131)
Q Consensus 870 ~~----~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~l 943 (1131)
+. ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+--...|..-+-..+..-++....+|.|..
T Consensus 247 i~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 247 VFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 11 1234467888898 6678888999999999999999999887777777776666666556666777887654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.65 E-value=0.0095 Score=61.58 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=151.2
Q ss_pred EEEec---CCCCEEEEEe--CCeEEEEECCCceeEEEEeCC-CCCeeEEEEeCC-CCcEEEEEeCC--------------
Q 001178 838 CVALS---KNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSP-PPASTFLAFHPQ-DNNIIAIGMED-------------- 896 (1131)
Q Consensus 838 ~l~~s---~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~-~~~~la~g~~d-------------- 896 (1131)
.+.+. +||+++.+.. ++.|.+-|+.+.++.+....+ ...+..+...++ +..+++.++.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 34554 4899999998 688999999999987766543 345666666542 44566665553
Q ss_pred ----CcEEEEEeecceeEEeecccccCeeEEEEccCCCEEEEEeCCC---------------cEEEEEc-----------
Q 001178 897 ----STIQIYNVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDA---------------QLIFWNT----------- 946 (1131)
Q Consensus 897 ----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg---------------~v~lwd~----------- 946 (1131)
+.+.++|.++.+....... .+....+++++||+++++.+.+. .+.++++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2356778888777665543 24567899999999988876431 1333333
Q ss_pred ------------CCCce-eeeeeeecCCCCCCCCceEEEEcCCCcEEEEEe--CCeEEEEeCCCcccc--------eeee
Q 001178 947 ------------DTWEK-RKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNH--ETQLAIYDGSKMECI--------RQWV 1003 (1131)
Q Consensus 947 ------------~~~~~-~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--d~~i~vwd~~~~~~~--------~~~~ 1003 (1131)
..... .....+..+ .....+.++|||++++++. +.++.|+|++..... ..+.
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred cEEeCCceeecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 21100 001111111 2345689999999999975 889999999743221 1111
Q ss_pred cCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCC----------ceeeEecCCccccCCCC-CCCCccccEEEEEc
Q 001178 1004 PQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSL----------RLRCRIAPSAYMSQASP-NSSQTVFPLVVTSH 1072 (1131)
Q Consensus 1004 ~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~~-~~~~~v~~~~v~~~ 1072 (1131)
......-.-..-+|...|.-..+-.-|..|.-|++... ..+.++..+ |-++|.. ..+. .-.
T Consensus 323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~gh~~~~~g~-------t~~ 394 (459)
T d1fwxa2 323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHLKTVMGE-------TLD 394 (459)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEEEETTTT-------STT
T ss_pred eecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-cCCCCCccCcCC-------cCC
Confidence 11111334556789888854444458999999998533 344444322 2222210 0000 012
Q ss_pred CCCCCeEEEEec---CC----------cEEEEecCCCccccccccCC
Q 001178 1073 PQEPNQLAVGLT---DG----------SVKVIEPSETERKWGVAVPV 1106 (1131)
Q Consensus 1073 p~~~~~l~s~~~---Dg----------~v~iW~~~~~~~~w~~~~p~ 1106 (1131)
| ++.+|++... |+ +-.+.|++.++++...-.|.
T Consensus 395 ~-dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p~ 440 (459)
T d1fwxa2 395 A-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 440 (459)
T ss_dssp C-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred C-CCCEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEeccCC
Confidence 2 6778887763 22 34588898888875555444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.59 E-value=0.0054 Score=65.81 Aligned_cols=229 Identities=12% Similarity=0.070 Sum_probs=122.3
Q ss_pred ceeecCCCCcccccC-CCCCCCCCeeEEEecCCCCEEEEEe--CCeEEEEECCCceeEEEEeCCC-CCeeEEEEeCCCCc
Q 001178 813 PQHWQPSNGLLMTND-VPENAEDVVPCVALSKNDSYVMSAG--GGKVSLFNMMNFKVMTTFMSPP-PASTFLAFHPQDNN 888 (1131)
Q Consensus 813 ~~~w~~~~~~~~~~~-~~~~~~~~i~~l~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~ 888 (1131)
..+||+.++...... +...+.......++.+||++++.|+ ...+.+||..+..-...-.... ..-.+++..+ |++
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~ 132 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGR 132 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCc
Confidence 356777777644321 1112333445678899999999987 3679999998865543222111 2234566677 788
Q ss_pred EEEEEeCC------CcEEEEEeecceeEEeec---------cccc-----CeeEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001178 889 IIAIGMED------STIQIYNVRVDEVKTKLK---------GHQK-----HITGLAFSTNLNILVSSGSDAQLIFWNTDT 948 (1131)
Q Consensus 889 ~la~g~~d------g~I~iwd~~~~~~~~~~~---------~h~~-----~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~ 948 (1131)
+++.|+.+ ..+.+||..+.+-...-. .+.. .-..+...++|+.++.++.++.+.+++..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 88888753 368999988764321100 0110 111233445778888888888788888777
Q ss_pred CceeeeeeeecCCCCCCC--CceEEEE-cCCCcEEEEEe---------CCeEEEEeCCCccc---ceeeecCCCCCCCeE
Q 001178 949 WEKRKSIAIQLPAGKLPV--GETRVQF-HSDQVRLLVNH---------ETQLAIYDGSKMEC---IRQWVPQDVLSSPIS 1013 (1131)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~--~v~~v~~-s~d~~~l~~~~---------d~~i~vwd~~~~~~---~~~~~~~~~~~~~v~ 1013 (1131)
.................. .-..+.+ ..+++.++.+. .....+.+...... .............-.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 292 (387)
T d1k3ia3 213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH 292 (387)
T ss_dssp CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence 553322221111111111 1122222 34566666642 11233343332111 111111111122234
Q ss_pred EEEEccCCCEEEEEecC-----------CcEEEEECCCCc
Q 001178 1014 SAAYSCNSQLIYATFTD-----------GSIGVFDADSLR 1042 (1131)
Q Consensus 1014 ~i~~s~dg~~l~s~~~d-----------g~i~vwd~~~~~ 1042 (1131)
+....+||++++.|+.+ ..+.+||.++.+
T Consensus 293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~ 332 (387)
T d1k3ia3 293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 332 (387)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe
Confidence 55667899999998843 147889987765
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.59 E-value=0.0075 Score=64.61 Aligned_cols=280 Identities=8% Similarity=-0.011 Sum_probs=140.0
Q ss_pred EEEEEecCCCcEEEEEcCC-----C------eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcC
Q 001178 351 VSMDFHPFHHTLLVVGCGD-----G------EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSP 419 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~~d-----g------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp 419 (1131)
...+...+|+ +++.|+.+ + .+.+||..+++-..... ....|.......++.+
T Consensus 23 ~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 85 (387)
T d1k3ia3 23 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 85 (387)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred EEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCC----------------CCCCcccceeEEEEec
Confidence 3444455676 66666642 1 37789998876543110 1223333344678899
Q ss_pred CCCEEEEEeCC-CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCC------CcEEEEeCCCceeEE
Q 001178 420 DGNFIGVAFTK-HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDD------KLIRVWDLSGRKLFQ 492 (1131)
Q Consensus 420 dg~~las~~~d-~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d------~~i~iwd~~~~~~~~ 492 (1131)
||++++.|+.+ ..+.+||..+..-.. ...+.. ...-...+..+||+ +++.|+.+ ..+.+||.....-..
T Consensus 86 ~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 86 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCceee
Confidence 99999998765 589999998864321 111211 12234567778998 67777643 468899933332222
Q ss_pred ecC----------CccCe----EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC--C------CceEEEEEE-
Q 001178 493 FEG----------HEAPV----YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA--P------GLWCTTMLY- 549 (1131)
Q Consensus 493 ~~~----------h~~~v----~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~------~~~v~~~~~- 549 (1131)
+.. +...+ ....+ ...+++.++.+..++.+.+++..+......... . ...-.++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (387)
T d1k3ia3 162 LPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD 240 (387)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE
T ss_pred cCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEee
Confidence 211 00000 00001 123455666666666666666655433221100 0 001122222
Q ss_pred ccCCCEEEEEeecCCC----CceEEEEeCCC---CeeeEEEec--ccCCceEEEEEeCCCCEEEEEEcC-----------
Q 001178 550 SADGSRLFSCGTSKEG----DSHLVEWNESE---GALKRTYIG--FRKKSAGVVQFDTTRNRILAAGED----------- 609 (1131)
Q Consensus 550 s~~g~~l~~~~~~~~~----~~~i~iwd~~~---~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d----------- 609 (1131)
..+++.++.++..... .....+.+... ......... .....-.+....++++.+++|+.+
T Consensus 241 ~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~ 320 (387)
T d1k3ia3 241 AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPV 320 (387)
T ss_dssp TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBC
T ss_pred ccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEe
Confidence 3466677776632111 11223333221 111111110 011123345566888988887743
Q ss_pred CcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC
Q 001178 610 NQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA 652 (1131)
Q Consensus 610 g~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~ 652 (1131)
.++.+||..+.+-...-........-......+||++++.|+.
T Consensus 321 ~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 321 FTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1478899887754332211111001123345789999988874
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.55 E-value=0.084 Score=59.12 Aligned_cols=156 Identities=8% Similarity=0.114 Sum_probs=89.9
Q ss_pred cEEEEEeCCCcEEEEEeecceeEEeeccccc-----------------------------------CeeEEEEccCCCEE
Q 001178 888 NIIAIGMEDSTIQIYNVRVDEVKTKLKGHQK-----------------------------------HITGLAFSTNLNIL 932 (1131)
Q Consensus 888 ~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~-----------------------------------~V~~l~~s~dg~~l 932 (1131)
..++.++.+|.++++|..+|+.+...+.... .-..++++|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 4677888999999999999987654321100 01124677777777
Q ss_pred EEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEEeCCeEEEEeCCCcccceeeecCCCCCCCe
Q 001178 933 VSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVNHETQLAIYDGSKMECIRQWVPQDVLSSPI 1012 (1131)
Q Consensus 933 ~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~v 1012 (1131)
+....+....++.....+...........+ .......+ +++.-.....-|.+.-||+.+++.+-...... +.
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~----p~ 479 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSG---TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PW 479 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGG---GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SC
T ss_pred EeeccccceeeecccccccccCCCCccccc---cccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC----CC
Confidence 776666666665554422111000000000 00000000 00000000112568888999998887765542 22
Q ss_pred EEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 1013 SSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 1013 ~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.+-..+-.|.++++|+.||.++.+|.++|+.+..+....
T Consensus 480 ~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 480 NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (573)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence 222345578899999999999999999999998887543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.55 E-value=0.029 Score=63.25 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=46.6
Q ss_pred CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 986 ~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
|.+.-||+.+++.+-+.... .++.+-.++..|.+++.|+.||.++-+|.++|+.+.++....
T Consensus 453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence 57888899998887665433 222333344568889899999999999999999998887544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.53 E-value=0.048 Score=53.06 Aligned_cols=230 Identities=12% Similarity=0.134 Sum_probs=144.1
Q ss_pred EEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCC
Q 001178 352 SMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKH 431 (1131)
Q Consensus 352 ~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~ 431 (1131)
+.-.+|..+ +||.-+ ..++.|+|+++.++++... ....|..-.|-.+. .|+..+ +.
T Consensus 67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~~-~L~lVT-~t 122 (327)
T d1utca2 67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DN 122 (327)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSSS-EEEEEC-SS
T ss_pred hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCCC-EEEEEc-CC
Confidence 344567776 666654 4589999999988876422 13467677776554 455443 45
Q ss_pred eEEEEEecCCCccceeeeeecCc----CCeeEEEEecCCCceEEEEE------cCCCcEEEEeCCCceeEEecCCccCeE
Q 001178 432 LIHLYTYQGSNDLCQSLEIDAHV----GGVNDLAFSYPNKQLCIVTC------GDDKLIRVWDLSGRKLFQFEGHEAPVY 501 (1131)
Q Consensus 432 ~i~vwd~~~~~~~~~~~~~~~h~----~~V~~l~~s~d~~~~~l~s~------s~d~~i~iwd~~~~~~~~~~~h~~~v~ 501 (1131)
.|.-|++++... +.+.+.-|. ..|..-..+++.+++ +++| +-.|.+.+|..+.+.-+.+.||.+.-.
T Consensus 123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~ 199 (327)
T d1utca2 123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFA 199 (327)
T ss_dssp EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEE
T ss_pred ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccCcCccccceeeeeE
Confidence 799999966443 223344443 357777888899963 3332 123677899988888888999887766
Q ss_pred EEeecccCCccEEEE-E---ecCCeEEEEeCCCCc---ee-----EEec----CCCceEEEEEEccCCCEEEEEeecCCC
Q 001178 502 SVCPHQKENIHFIFS-T---AVDGKIKAWLYDNVG---SR-----VDYD----APGLWCTTMLYSADGSRLFSCGTSKEG 565 (1131)
Q Consensus 502 ~~~~~~~~~~~~l~s-~---s~dg~i~~wd~~~~~---~~-----~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~ 565 (1131)
.+.+........+++ + ...+.+++-++.... .. ..+. ...+-..++.+++.-..+...+.
T Consensus 200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---- 275 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 275 (327)
T ss_dssp EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence 665543332223332 2 223678888876532 11 1111 12334567888888778877775
Q ss_pred CceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEEcCCcEE
Q 001178 566 DSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAGEDNQIK 613 (1131)
Q Consensus 566 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 613 (1131)
-|.|++||++++.++..-+-..+ .+...+-..+..-+++...+|.|.
T Consensus 276 ~G~i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 276 YGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEE
T ss_pred CcEEEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEE
Confidence 89999999999998876554333 555555555555566666666554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=0.063 Score=53.09 Aligned_cols=223 Identities=11% Similarity=0.038 Sum_probs=138.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeC
Q 001178 407 DSSISVSRVAWSPDGNFIGVA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDL 485 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~ 485 (1131)
.+...+.+++|.+..+.|..+ ..++.|...++.++.... .+..-...+.++++..-+.. +.++-...+.|.+.+.
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~ 108 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM 108 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence 444568889999887777665 456788888887654321 12233356889999876664 4456667789999996
Q ss_pred CCceeEEec-CCccCeEEEeecccCCccEEEEEecCC--eEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeec
Q 001178 486 SGRKLFQFE-GHEAPVYSVCPHQKENIHFIFSTAVDG--KIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTS 562 (1131)
Q Consensus 486 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 562 (1131)
+|.....+. .....+..++++|.. +.++.+-...+ .|.--+++...........-.....+++.+.++.|..+..
T Consensus 109 dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~- 186 (263)
T d1npea_ 109 DGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (263)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred CCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC-
Confidence 666544443 333567888887643 23333432223 3444455554444433333446789999999888877742
Q ss_pred CCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEc
Q 001178 563 KEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFN 641 (1131)
Q Consensus 563 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~s 641 (1131)
+.+.|...+.........+.+.. ....+++. +++|+.. ...+.|...|..+++....+...... ....+++.
T Consensus 187 --~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~-~~~gi~v~ 259 (263)
T d1npea_ 187 --GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT-RLYGITIA 259 (263)
T ss_dssp --TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC-CCCCEEEE
T ss_pred --CCCEEEEEECCCCCeEEEECCCC--CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCC-CcceEEEe
Confidence 36789888887555444444322 23456664 4555554 46788999999988887766443322 34555554
Q ss_pred C
Q 001178 642 K 642 (1131)
Q Consensus 642 p 642 (1131)
+
T Consensus 260 ~ 260 (263)
T d1npea_ 260 L 260 (263)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.47 E-value=0.05 Score=60.93 Aligned_cols=191 Identities=12% Similarity=0.026 Sum_probs=111.5
Q ss_pred EEEEEcCCCcEEEEe-C-CCceeEEecCCcc----Ce-------EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE
Q 001178 470 CIVTCGDDKLIRVWD-L-SGRKLFQFEGHEA----PV-------YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD 536 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~-~~~~~~~~~~h~~----~v-------~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~ 536 (1131)
++++.+.++.|.-.| . +|+.+.++..... .. ..+++. +..++.++.||.+.-.|.++++....
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 344444467777777 4 5888877642110 00 122321 14677888999999999999888765
Q ss_pred ecCCCc----eEEEEEEccCCCEEEEEeec--CCCCceEEEEeCCCCeeeEEEecccC----------------------
Q 001178 537 YDAPGL----WCTTMLYSADGSRLFSCGTS--KEGDSHLVEWNESEGALKRTYIGFRK---------------------- 588 (1131)
Q Consensus 537 ~~~~~~----~v~~~~~s~~g~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 588 (1131)
...... .+++--.-.++ .++.+... ....+.|+-+|..+|+.+-.+.....
T Consensus 141 ~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (571)
T d2ad6a1 141 VEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence 543211 11111111133 33333321 11367899999999999887653210
Q ss_pred --------------Cc-eEEEEEeCCCCEEEEEEc----------------CCcEEEEEcCCCeEEEEEeccCCCC----
Q 001178 589 --------------KS-AGVVQFDTTRNRILAAGE----------------DNQIKFWDMDNVNMLTSTEAEGGLP---- 633 (1131)
Q Consensus 589 --------------~~-v~~~~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~---- 633 (1131)
.. ....++.+....++.+.. ...+.-.|.++|+.+...+...+..
T Consensus 220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D 299 (571)
T d2ad6a1 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence 01 123566777777766543 3567888999999888776543310
Q ss_pred ---CcceEEEcCCCC---EEEEEECCCcEEEEecCCCc
Q 001178 634 ---SLPRLRFNKEGN---LLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 634 ---~i~~v~~sp~~~---~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.........+++ .++.++.+|.+.++|..+++
T Consensus 300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 111112222343 46778889999999998884
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.40 E-value=0.078 Score=52.41 Aligned_cols=221 Identities=9% Similarity=0.003 Sum_probs=137.9
Q ss_pred CCCcEEEEEEecCCCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEE
Q 001178 346 QGSSVVSMDFHPFHHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIG 425 (1131)
Q Consensus 346 h~~~V~~~~fspdg~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la 425 (1131)
+...+.+++|.+.++++..+-..++.|+..++.++.... +....-..+.++++..-+..|.
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~-------------------v~~~~~~~p~~iAvD~~~~~lY 94 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIF 94 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEE
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE-------------------EEEeccccccEEEEeccCCeEE
Confidence 444688899999888766666667889988887654432 2223335688999988666665
Q ss_pred EE-eCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEe--CCCceeEEec-CCccCeE
Q 001178 426 VA-FTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWD--LSGRKLFQFE-GHEAPVY 501 (1131)
Q Consensus 426 s~-~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd--~~~~~~~~~~-~h~~~v~ 501 (1131)
.+ ...+.|.+.++....... .+.........+++.|.... ++.+-...+..+||. ..|.....+. ..-....
T Consensus 95 ~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~p~~l~vdp~~g~-ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~ 170 (263)
T d1npea_ 95 WTDSQLDRIEVAKMDGTQRRV---LFDTGLVNPRGIVTDPVRGN-LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN 170 (263)
T ss_dssp EEETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEETTTTE-EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred EeccCCCEEEEEecCCceEEE---EecccccCCcEEEEecccCc-EEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence 44 456789999987654321 12233456899999998874 333433333445654 6665544443 2234567
Q ss_pred EEeecccCCccEE-EEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeee
Q 001178 502 SVCPHQKENIHFI-FSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALK 580 (1131)
Q Consensus 502 ~~~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~ 580 (1131)
.+++.+.. +.| ++-...+.|...+++............. ..++++. +.+|..... ..+.|...|..+++..
T Consensus 171 glaiD~~~--~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~---~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 171 GLTFDAFS--SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDW---KTNSVIAMDLAISKEM 242 (263)
T ss_dssp EEEEETTT--TEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEET---TTTEEEEEETTTTEEE
T ss_pred eEEEeecC--cEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEEC---CCCEEEEEECCCCccc
Confidence 88886533 345 4445678899889876655544444333 3467665 556666542 2678999999888887
Q ss_pred EEEecccCCceEEEEEe
Q 001178 581 RTYIGFRKKSAGVVQFD 597 (1131)
Q Consensus 581 ~~~~~~~~~~v~~~~~s 597 (1131)
..+..........+.+.
T Consensus 243 ~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 243 DTFHPHKQTRLYGITIA 259 (263)
T ss_dssp EEECCSSCCCCCCEEEE
T ss_pred eEECCCCCCCcceEEEe
Confidence 77654444334344443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.40 E-value=0.033 Score=62.46 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=46.0
Q ss_pred CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 985 ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 985 d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.|.|.-+|+.+|+.+-+..... +..+-.++-.+.++++|+.||.++-+|.++|+.+.++....
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~----~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~ 505 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKF----AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS----CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cccEEEeccCCCceeeEcCCCC----CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC
Confidence 3578889999998887665432 11111223356788889999999999999999998887543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.36 E-value=0.056 Score=60.39 Aligned_cols=150 Identities=7% Similarity=0.044 Sum_probs=94.2
Q ss_pred cEEEEEeecceeEEeecccccCee---------EEEEccCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecC-----
Q 001178 898 TIQIYNVRVDEVKTKLKGHQKHIT---------GLAFSTNL---NILVSSGSDAQLIFWNTDTWEKRKSIAIQLP----- 960 (1131)
Q Consensus 898 ~I~iwd~~~~~~~~~~~~h~~~V~---------~l~~s~dg---~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~----- 960 (1131)
.|.-.|+++++.+-.++.....+. -+....++ ..++.++.+|.+.++|..+++..........
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 466667788887665543322222 12222344 3577888999999999999886543221100
Q ss_pred ------------------------CCCC-CCCceEEEEcCCCcEEEEEe-------------------------------
Q 001178 961 ------------------------AGKL-PVGETRVQFHSDQVRLLVNH------------------------------- 984 (1131)
Q Consensus 961 ------------------------~~~~-~~~v~~v~~s~d~~~l~~~~------------------------------- 984 (1131)
.+.. ...-...+++|+..++++..
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 0000 01112456778877776521
Q ss_pred ------CCeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 985 ------ETQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 985 ------d~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
.|.+.-+|+.+++.+-+..... +..+-.++-.|.++++|+.||.++-+|.++|+.+.++....
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~ 499 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence 1457788999998887765432 22222344567788999999999999999999998887543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.36 E-value=0.063 Score=57.86 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=132.8
Q ss_pred cEEEEEEecCCCcEEEEEcCCC----eEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEE
Q 001178 349 SVVSMDFHPFHHTLLVVGCGDG----EITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFI 424 (1131)
Q Consensus 349 ~V~~~~fspdg~~llasg~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l 424 (1131)
.+..+++||||++++++-+.+| .|++.|+.+|+.+.. .+.. .....++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------~i~~--~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------cccc--ccccceEEcCCCCEE
Confidence 4456688999997665544444 699999999987642 0110 112468899999988
Q ss_pred EEEeCC----------------CeEEEEEecCCCccceeeeeecC--cCCeeEEEEecCCCceEEEEEc-CCCcEEEE--
Q 001178 425 GVAFTK----------------HLIHLYTYQGSNDLCQSLEIDAH--VGGVNDLAFSYPNKQLCIVTCG-DDKLIRVW-- 483 (1131)
Q Consensus 425 as~~~d----------------~~i~vwd~~~~~~~~~~~~~~~h--~~~V~~l~~s~d~~~~~l~s~s-~d~~i~iw-- 483 (1131)
.....+ ..|..|.+.+...-. ...+... ...+..+..++|++.+++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 257777776653221 1123332 2346778889999963332332 23344444
Q ss_pred eCCC---c------eeEEecCCccCeEEEeecccCCccEEEEEe---cCCeEEEEeCCCCcee--EE-ecCCCceEEEEE
Q 001178 484 DLSG---R------KLFQFEGHEAPVYSVCPHQKENIHFIFSTA---VDGKIKAWLYDNVGSR--VD-YDAPGLWCTTML 548 (1131)
Q Consensus 484 d~~~---~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~--~~-~~~~~~~v~~~~ 548 (1131)
|... . .............-+.. .++.+++... .++.|...++...... .. +..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4211 1 11112222222222221 1122333222 3466666676654321 22 223333454444
Q ss_pred EccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccCCceEEEEEeCCCCEEEEEE----cCCcEEEEEcCCCeE
Q 001178 549 YSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRKKSAGVVQFDTTRNRILAAG----EDNQIKFWDMDNVNM 622 (1131)
Q Consensus 549 ~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 622 (1131)
+...+.+|+.... .++...|++++..++.....+.. ....+..+...++...+.... .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~-~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPL-EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECC-CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCC-CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 5555566665542 34567899999988877655443 333455555555555444332 247788899988753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.34 E-value=0.17 Score=56.67 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=47.7
Q ss_pred CeEEEEeCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecCCcEEEEECCCCceeeEecCCc
Q 001178 986 TQLAIYDGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDGSIGVFDADSLRLRCRIAPSA 1051 (1131)
Q Consensus 986 ~~i~vwd~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1051 (1131)
|.+.-+|+.+|+.+-+..... ++.+-.++..|.++++|+.||.++-+|.++|+.+.++....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~ 527 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence 568888999998887766542 23322345578889999999999999999999998887543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.31 E-value=0.097 Score=58.69 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=113.1
Q ss_pred EEEEEcCCCcEEEEe--CCCceeEEecCCcc----------Ce-EEEeeccc--CCccEEEEEecCCeEEEEeCCCCcee
Q 001178 470 CIVTCGDDKLIRVWD--LSGRKLFQFEGHEA----------PV-YSVCPHQK--ENIHFIFSTAVDGKIKAWLYDNVGSR 534 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd--~~~~~~~~~~~h~~----------~v-~~~~~~~~--~~~~~l~s~s~dg~i~~wd~~~~~~~ 534 (1131)
++++++.++.+...| .+|+.+.++..... .+ ..+++... .....++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 344455455555555 36777766542110 01 22333322 22347888999999999999999888
Q ss_pred EEecCCCc----eEEEEEEccCCCEEEEEeecC--CCCceEEEEeCCCCeeeEEEeccc---------------------
Q 001178 535 VDYDAPGL----WCTTMLYSADGSRLFSCGTSK--EGDSHLVEWNESEGALKRTYIGFR--------------------- 587 (1131)
Q Consensus 535 ~~~~~~~~----~v~~~~~s~~g~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~--------------------- 587 (1131)
..+..... .+++--.- -+..++++.... ...|.|+-+|..+|+++-.+....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~ 223 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQK 223 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCT
T ss_pred ccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccccccc
Confidence 87643221 11110001 133455543211 235889999999999998765321
Q ss_pred ----------------CCceEEEEEeCCCCEEEEEEc----------------CCcEEEEEcCCCeEEEEEeccCCCC--
Q 001178 588 ----------------KKSAGVVQFDTTRNRILAAGE----------------DNQIKFWDMDNVNMLTSTEAEGGLP-- 633 (1131)
Q Consensus 588 ----------------~~~v~~~~~s~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~-- 633 (1131)
.......++.+..+.++.+.. ...|.-.|+.+|+.+...+...+..
T Consensus 224 ~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd 303 (596)
T d1w6sa_ 224 GLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWD 303 (596)
T ss_dssp THHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccC
Confidence 001223566777777776543 2457788999999888776543311
Q ss_pred -----CcceEEE-cCCC---CEEEEEECCCcEEEEecCCCc
Q 001178 634 -----SLPRLRF-NKEG---NLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 634 -----~i~~v~~-sp~~---~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
....+.. ..+| ..++....+|.+.++|-.++.
T Consensus 304 ~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 304 YAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 1111111 2234 357778889999999998883
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.14 Score=50.58 Aligned_cols=237 Identities=11% Similarity=0.013 Sum_probs=140.1
Q ss_pred EEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEecC
Q 001178 362 LLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAF-TKHLIHLYTYQG 440 (1131)
Q Consensus 362 llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~vwd~~~ 440 (1131)
||++- ...|+-.++.+.+... +......+.+++|.+..+.|.-.. .++.|...++..
T Consensus 4 Ll~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~ 61 (266)
T d1ijqa1 4 LFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61 (266)
T ss_dssp EEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred EEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence 44443 3468888887654321 123345678999999888776664 456677666654
Q ss_pred CCccceee-eeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEE-ecCCccCeEEEeecccCCccEEEEE-
Q 001178 441 SNDLCQSL-EIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQ-FEGHEAPVYSVCPHQKENIHFIFST- 517 (1131)
Q Consensus 441 ~~~~~~~~-~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~- 517 (1131)
........ .+......+..+++.+.++. +..+-...+.|.+.+.+|..... +.........+++++.. +.++++.
T Consensus 62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~ 139 (266)
T d1ijqa1 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDW 139 (266)
T ss_dssp ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-TEEEEEEC
T ss_pred CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEccc-CeEEEecc
Confidence 22111111 12233355778999887775 45566677899999976665433 34445667888887643 3333333
Q ss_pred ecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEecccC-CceEEEEE
Q 001178 518 AVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYIGFRK-KSAGVVQF 596 (1131)
Q Consensus 518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~ 596 (1131)
+..+.|.-.+++...........-.....+++.+.++.|..+.. ..+.|...++.............. .....+++
T Consensus 140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 216 (266)
T ss_dssp SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE
T ss_pred CCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEEE
Confidence 33456766777665544444444456789999999988888743 267888888865443333333221 12344555
Q ss_pred eCCCCEEEEE-EcCCcEEEEEcCCCeEEEEEe
Q 001178 597 DTTRNRILAA-GEDNQIKFWDMDNVNMLTSTE 627 (1131)
Q Consensus 597 s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 627 (1131)
. +.+|+.. ..++.|+..+..++.....+.
T Consensus 217 ~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 217 F--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred E--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 4 3445544 356778777877776555544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.13 E-value=0.13 Score=57.43 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=110.2
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeee----ecC---cCCe-eEEEEecCCCceEEEEEcCCCcEEEEe-CCCceeEEe
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEI----DAH---VGGV-NDLAFSYPNKQLCIVTCGDDKLIRVWD-LSGRKLFQF 493 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~----~~h---~~~V-~~l~~s~d~~~~~l~s~s~d~~i~iwd-~~~~~~~~~ 493 (1131)
.|.+++.++.|.-+|.++|+.+-+...- ..+ ...+ ..+.+. ++ .++.++.|+.+.-.| .+|+.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG---KVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CC---cEEEEecccceeeeccccccceecc
Confidence 3444556666777777777654321100 000 0111 123333 23 367778888888889 889888655
Q ss_pred cCCc---cCeEEEeecccCCccEEEEEec------CCeEEEEeCCCCceeEEecCCC-----------------------
Q 001178 494 EGHE---APVYSVCPHQKENIHFIFSTAV------DGKIKAWLYDNVGSRVDYDAPG----------------------- 541 (1131)
Q Consensus 494 ~~h~---~~v~~~~~~~~~~~~~l~s~s~------dg~i~~wd~~~~~~~~~~~~~~----------------------- 541 (1131)
.... ..+.. .-.|.--...++.++. .|.|+.+|.++++.+..+....
T Consensus 155 ~~~~~~~~~~~~-~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLTI-TGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCBC-CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEEe-ecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 4221 11110 0000001134555432 4689999999999888653321
Q ss_pred --------ceE-EEEEEccCCCEEEEEeec---------------CCCCceEEEEeCCCCeeeEEEecccCC--------
Q 001178 542 --------LWC-TTMLYSADGSRLFSCGTS---------------KEGDSHLVEWNESEGALKRTYIGFRKK-------- 589 (1131)
Q Consensus 542 --------~~v-~~~~~s~~g~~l~~~~~~---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~-------- 589 (1131)
..+ ...++.++...++..... ......|.-.|..+++....++..+..
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 001 135566666666544311 011346778899999888776543221
Q ss_pred ceEEEEEeCCC---CEEEEEEcCCcEEEEEcCCCeEEEEEec
Q 001178 590 SAGVVQFDTTR---NRILAAGEDNQIKFWDMDNVNMLTSTEA 628 (1131)
Q Consensus 590 ~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 628 (1131)
.........++ ..++.++.+|.++++|..+|+.+.....
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~ 355 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccccccccc
Confidence 11122222333 3566788899999999999998877653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.00 E-value=0.17 Score=56.26 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=111.4
Q ss_pred EEEEcCCCcEEEEe-CCCceeEEecCCccC-------eEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCc
Q 001178 471 IVTCGDDKLIRVWD-LSGRKLFQFEGHEAP-------VYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGL 542 (1131)
Q Consensus 471 l~s~s~d~~i~iwd-~~~~~~~~~~~h~~~-------v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 542 (1131)
++.++.++.|.-.| .+|+.+.++...... ...+.......+..++.++.|+.+.-.|..+++..........
T Consensus 69 vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~ 148 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP 148 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCT
T ss_pred EEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCc
Confidence 55566677888888 888888776421110 0000000001124688889999999999999888776543221
Q ss_pred -eEEEEEEcc--CCCEEEEEeec--CCCCceEEEEeCCCCeeeEEEecccC-----------------------------
Q 001178 543 -WCTTMLYSA--DGSRLFSCGTS--KEGDSHLVEWNESEGALKRTYIGFRK----------------------------- 588 (1131)
Q Consensus 543 -~v~~~~~s~--~g~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------------- 588 (1131)
....+.-.| .+..++.+... ....+.|.-+|.++|+.+-.+.....
T Consensus 149 ~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 228 (560)
T d1kv9a2 149 AKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGG 228 (560)
T ss_dssp TSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEE
T ss_pred ccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCC
Confidence 000000011 12233333221 12357899999999999988753211
Q ss_pred C-ceEEEEEeCCCCEEEEEEc-------------------CCcEEEEEcCCCeEEEEEeccCCCCC-------cceEEEc
Q 001178 589 K-SAGVVQFDTTRNRILAAGE-------------------DNQIKFWDMDNVNMLTSTEAEGGLPS-------LPRLRFN 641 (1131)
Q Consensus 589 ~-~v~~~~~s~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~-------i~~v~~s 641 (1131)
. .-...++.+..+.++.+.. ...|.-.|+++++.....+...+... ..-+...
T Consensus 229 ~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~ 308 (560)
T d1kv9a2 229 GTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN 308 (560)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred CCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeee
Confidence 0 1223667777777665431 24577789999998877665433110 0111122
Q ss_pred CCC---CEEEEEECCCcEEEEecCCCc
Q 001178 642 KEG---NLLVVTTADQGIKILANADGL 665 (1131)
Q Consensus 642 p~~---~~l~~~~~dg~i~iw~~~~~~ 665 (1131)
.++ ..++.+..+|.+.++|..++.
T Consensus 309 ~~g~~~~~v~~~~k~G~~~~lDr~tG~ 335 (560)
T d1kv9a2 309 IDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (560)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCceeeeeeecCccceEEEEecCCCc
Confidence 233 356778889999999988884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.94 E-value=0.049 Score=58.75 Aligned_cols=247 Identities=11% Similarity=0.072 Sum_probs=123.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CC----CeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcC-----
Q 001178 407 DSSISVSRVAWSPDGNFIGVAF-TK----HLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGD----- 476 (1131)
Q Consensus 407 ~h~~~V~~~~~spdg~~las~~-~d----~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~----- 476 (1131)
++.-.+..+++|||++++|.+- .+ ..|+++|+.+++.+.. .+. ......++|++|++. ++.+.-.
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~ 196 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGK 196 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSC
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCc
Confidence 4444566778999999998652 22 3799999999875532 222 112357899999995 3333211
Q ss_pred ----------CCcEEEEeC-CC--ceeEEecCCcc--CeEEEeecccCCccEEEEEe---cCCeEEEE--eCCCCcee--
Q 001178 477 ----------DKLIRVWDL-SG--RKLFQFEGHEA--PVYSVCPHQKENIHFIFSTA---VDGKIKAW--LYDNVGSR-- 534 (1131)
Q Consensus 477 ----------d~~i~iwd~-~~--~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s---~dg~i~~w--d~~~~~~~-- 534 (1131)
...|..|.+ +. .-...+..... .+..+.. +.++++++... .++...+| ++......
T Consensus 197 ~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 124566652 22 11222333332 3334433 45666665432 23334444 43322110
Q ss_pred -----EE-ecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCee--eEEEecccCCceEEEEEeCCCCEEEEE
Q 001178 535 -----VD-YDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGAL--KRTYIGFRKKSAGVVQFDTTRNRILAA 606 (1131)
Q Consensus 535 -----~~-~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~ 606 (1131)
.. .......... ... +|..+...+.....++.|...++..... ...+..++...+..-.+...+++|+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~ 352 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYDY-VTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (430)
T ss_dssp SSCCCEEEECSSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred cccceeEeecccccceEE-Eec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence 11 1111112222 222 3333433332233467787777765432 233333333334433444455666654
Q ss_pred E-cCC--cEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEEEC----CCcEEEEecCCC
Q 001178 607 G-EDN--QIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVTTA----DQGIKILANADG 664 (1131)
Q Consensus 607 ~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~~~----dg~i~iw~~~~~ 664 (1131)
. .++ .|++++..++.......... ..+..+...++...+..... -.++.-+|+.++
T Consensus 353 ~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~ 415 (430)
T d1qfma1 353 YLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (430)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence 4 443 48889998887655443322 23444444455544443322 256777887776
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.89 E-value=0.52 Score=52.48 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=109.1
Q ss_pred EEEEEcCCCcEEEEe-CCCceeEEecCCc--------cCe-EEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecC
Q 001178 470 CIVTCGDDKLIRVWD-LSGRKLFQFEGHE--------APV-YSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDA 539 (1131)
Q Consensus 470 ~l~s~s~d~~i~iwd-~~~~~~~~~~~h~--------~~v-~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 539 (1131)
.|+.++.++.|.-.| .+|+.+.++.... ..+ ..+++. +..++.++.|+.+.-.|.++++.......
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY----GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE----TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe----CCceEEecCCCeEEEecccccceeeeecc
Confidence 366667778888888 8888887764211 001 112221 24677889999999999998887764432
Q ss_pred CCc----eE--EEEEEc--cCCCEEEEEeecC---CCCceEEEEeCCCCeeeEEEecccC--------------------
Q 001178 540 PGL----WC--TTMLYS--ADGSRLFSCGTSK---EGDSHLVEWNESEGALKRTYIGFRK-------------------- 588 (1131)
Q Consensus 540 ~~~----~v--~~~~~s--~~g~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~-------------------- 588 (1131)
... .. .-..+. ..+..++..+... ...+.|.-+|..+|+.+-.+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence 111 00 001111 1233344332211 2256788999999988876643221
Q ss_pred -------------------C-ceEEEEEeCCCCEEEEEEc------------------------CCcEEEEEcCCCeEEE
Q 001178 589 -------------------K-SAGVVQFDTTRNRILAAGE------------------------DNQIKFWDMDNVNMLT 624 (1131)
Q Consensus 589 -------------------~-~v~~~~~s~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~ 624 (1131)
. .....++.+..++++.+.. ...+.-.|..+++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 0 1223567777777776541 2347777889999887
Q ss_pred EEeccCCCCCcce-------EEEc-CCC---CEEEEEECCCcEEEEecCCC
Q 001178 625 STEAEGGLPSLPR-------LRFN-KEG---NLLVVTTADQGIKILANADG 664 (1131)
Q Consensus 625 ~~~~~~~~~~i~~-------v~~s-p~~---~~l~~~~~dg~i~iw~~~~~ 664 (1131)
..+...+...... +.+. .++ ..++..+.++.+.++|-.++
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 7765443211111 1111 123 24566778899999998887
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.88 E-value=0.19 Score=51.16 Aligned_cols=199 Identities=9% Similarity=0.146 Sum_probs=113.8
Q ss_pred CCCCEEEEEe-CCeEEEEECCCceeEEEEeCCCCCeeEEEEeC-----CCCcEEEEEeC--C--CcEEEEEeec-ceeEE
Q 001178 843 KNDSYVMSAG-GGKVSLFNMMNFKVMTTFMSPPPASTFLAFHP-----QDNNIIAIGME--D--STIQIYNVRV-DEVKT 911 (1131)
Q Consensus 843 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-----~~~~~la~g~~--d--g~I~iwd~~~-~~~~~ 911 (1131)
|+..+++... .+-|.+||+. |+.+..+. .+++..+..-. +...-+++++. + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 3445555555 4559999995 67776664 45666665432 02223445542 2 3588888763 22333
Q ss_pred eeccc-------ccCeeEEEE--ccC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCCCCCceEEEEcCCC
Q 001178 912 KLKGH-------QKHITGLAF--STN-LN-ILVSSGSDAQLIFWNTDT---WEKRKSIAIQLPAGKLPVGETRVQFHSDQ 977 (1131)
Q Consensus 912 ~~~~h-------~~~V~~l~~--s~d-g~-~l~s~~~Dg~v~lwd~~~---~~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 977 (1131)
.+... ...+..+++ ++. |. +++....+|.+..|.+.. +........... ....+..+++.++.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---~~~q~EGCVvDde~ 191 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---MNSQTEGMAADDEY 191 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---CSSCEEEEEEETTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---CCCccceEEEeCCC
Confidence 33221 124677777 554 44 466677789998887743 222222222222 22678899999999
Q ss_pred cEEEEEe-CCeEEEEeCCC--c---ccceeeecCCCCCCCeEEEEEcc--CCC-EEEEEe-cCCcEEEEECCCC-ceeeE
Q 001178 978 VRLLVNH-ETQLAIYDGSK--M---ECIRQWVPQDVLSSPISSAAYSC--NSQ-LIYATF-TDGSIGVFDADSL-RLRCR 1046 (1131)
Q Consensus 978 ~~l~~~~-d~~i~vwd~~~--~---~~~~~~~~~~~~~~~v~~i~~s~--dg~-~l~s~~-~dg~i~vwd~~~~-~~~~~ 1046 (1131)
..|.++. +..++.++..- + ..+....+ ......+-.+++-. ++. ||++.+ .+++..|||..+. +.+..
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccC-ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 9999886 55566666541 1 22211111 12256777777543 433 666655 6789999998763 55555
Q ss_pred ec
Q 001178 1047 IA 1048 (1131)
Q Consensus 1047 ~~ 1048 (1131)
+.
T Consensus 271 F~ 272 (353)
T d1h6la_ 271 FQ 272 (353)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.26 Score=48.59 Aligned_cols=230 Identities=10% Similarity=0.018 Sum_probs=137.7
Q ss_pred EEEEEeCCCeEEEEEecCCCccceeeeeecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCc----eeE-EecCCc
Q 001178 423 FIGVAFTKHLIHLYTYQGSNDLCQSLEIDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGR----KLF-QFEGHE 497 (1131)
Q Consensus 423 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~----~~~-~~~~h~ 497 (1131)
+|+.+.. ..|+..++.+.... .+......+.+++|.+..+. ++.+-..++.|+--+..+. ... .+....
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 3444433 35888888765422 23335556889999988775 3444455666765553321 112 222233
Q ss_pred cCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCC
Q 001178 498 APVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEG 577 (1131)
Q Consensus 498 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~ 577 (1131)
..+..+++.+..+ ++.++-...+.|.+.+++.................+++.|...+|..... ...+.|...++..
T Consensus 77 ~~p~glAvD~~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dG- 152 (266)
T d1ijqa1 77 QAPDGLAVDWIHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNG- 152 (266)
T ss_dssp SCCCEEEEETTTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTS-
T ss_pred CCcceEEEeeccc-eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCC-
Confidence 4566777754432 44555567789999999877666655555567889999998777776643 1245677777654
Q ss_pred eeeEEEecccCCceEEEEEeCCCCEEEEE-EcCCcEEEEEcCCCeEEEEEeccCCCCCcceEEEcCCCCEEEEE-ECCCc
Q 001178 578 ALKRTYIGFRKKSAGVVQFDTTRNRILAA-GEDNQIKFWDMDNVNMLTSTEAEGGLPSLPRLRFNKEGNLLVVT-TADQG 655 (1131)
Q Consensus 578 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~v~~sp~~~~l~~~-~~dg~ 655 (1131)
.....+....-.....+++.+.++.|+.+ ...+.|...++....................+++. +..|+.+ ..++.
T Consensus 153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~ 230 (266)
T d1ijqa1 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 230 (266)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCe
Confidence 33334433333356789999888877766 45678888898765544444433332234566666 3344444 45677
Q ss_pred EEEEecCCC
Q 001178 656 IKILANADG 664 (1131)
Q Consensus 656 i~iw~~~~~ 664 (1131)
|...+..++
T Consensus 231 I~~~~~~~g 239 (266)
T d1ijqa1 231 IFSANRLTG 239 (266)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 776665555
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.12 E-value=0.0016 Score=48.38 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHhcCCCcc--HHHHHHHHhccCHHHHHHHhc
Q 001178 5 SRELVFLILQFLDEEKFKESVHRLEQESGFFFN--MKYFEEKALAGEWDEIEKYLS 58 (1131)
Q Consensus 5 ~~e~~rli~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1131)
++|+-+-|++||..+||.+++.+|.+|++++++ ...-..-+|+-+|..++.+=+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQk 62 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 62 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHH
Confidence 578999999999999999999999999998775 444455567777777755433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.27 E-value=1.5 Score=44.35 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=111.1
Q ss_pred CCcEEEEEeCCCcEEEEEeecceeEEeecccccCeeEEEEcc------CCCEEEEEeC--C--CcEEEEEcCCCceeeee
Q 001178 886 DNNIIAIGMEDSTIQIYNVRVDEVKTKLKGHQKHITGLAFST------NLNILVSSGS--D--AQLIFWNTDTWEKRKSI 955 (1131)
Q Consensus 886 ~~~~la~g~~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s~------dg~~l~s~~~--D--g~v~lwd~~~~~~~~~~ 955 (1131)
...+++....++-|++||+. |+.+..+. .+.+..|..-. ...-++.++. + .+|.+|.+........
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~- 114 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ- 114 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE-
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc-
Confidence 45567767777789999985 77676654 35666655432 2223455542 2 3588888764221111
Q ss_pred eeecCC---CCCCCCceEEEE--cCC-CcE-EEEE-eCCeEEEEeCC---Cc----ccceeeecCCCCCCCeEEEEEccC
Q 001178 956 AIQLPA---GKLPVGETRVQF--HSD-QVR-LLVN-HETQLAIYDGS---KM----ECIRQWVPQDVLSSPISSAAYSCN 1020 (1131)
Q Consensus 956 ~~~~~~---~~~~~~v~~v~~--s~d-~~~-l~~~-~d~~i~vwd~~---~~----~~~~~~~~~~~~~~~v~~i~~s~d 1020 (1131)
.+.... ......+..+|+ ++. |.+ +++. .+|.+..|.+. .+ +.++.+.. ...+-.+.+...
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde 190 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDE 190 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCC
Confidence 010000 001134666776 665 443 3333 47888888663 23 23334433 457889999999
Q ss_pred CCEEEEEecCCcEEEEECCC--CceeeEecCCccccCCCCCCCCccccEEEEEcCC-CCCeEEEEecCCcEEEEecCCC
Q 001178 1021 SQLIYATFTDGSIGVFDADS--LRLRCRIAPSAYMSQASPNSSQTVFPLVVTSHPQ-EPNQLAVGLTDGSVKVIEPSET 1096 (1131)
Q Consensus 1021 g~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~~~p~-~~~~l~s~~~Dg~v~iW~~~~~ 1096 (1131)
.+.|+.+-++..|..++++- +.....+.... .......+--+.+-..++ ++.+|+|.-.|+++.+||....
T Consensus 191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~-----g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-----GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTEEEEEETTTEEEEEESSTTSCSCCEEEEECS-----SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCcEEEecCccceEEEEeccCCCccceeeeccc-----CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999998887776666642 22221111100 001123344455655443 4567777777999999998764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=3.9 Score=41.56 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=108.7
Q ss_pred CCeeEEEecCCCCEEEEEeCCeEEEEECCC-----------ceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEE
Q 001178 834 DVVPCVALSKNDSYVMSAGGGKVSLFNMMN-----------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIY 902 (1131)
Q Consensus 834 ~~i~~l~~s~dg~~la~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iw 902 (1131)
....-++++....++++|+...+.|..+.. ........ -..|..++|+- + .|++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence 445678898888888888866788876431 11111222 23689999975 3 34444 45567777
Q ss_pred EeecceeEEeecccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 903 NVRVDEVKTKLKGHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 903 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
+..+-........-..++..+.++|. .++....++.+.++++..++......-.. .-.....+.+++|++.|+.+++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~-~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVT-SFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEE-EEEECSSEEEEEETTSCEEEEE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcc-eEEecCCceEEEEeCCcEEEEE
Confidence 76654333333334456888888775 56667778999999998875432210000 0000156788889988888888
Q ss_pred EeCCeEEEE-eCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEe
Q 001178 983 NHETQLAIY-DGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATF 1028 (1131)
Q Consensus 983 ~~d~~i~vw-d~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~ 1028 (1131)
+.++...+. ++.... .+.........|.+|.|..+..++++=+
T Consensus 188 ~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 188 WRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred eCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 755444332 222111 1221112245788999997777776553
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.6 Score=46.35 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=105.7
Q ss_pred CeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCC---------CcEEEEEeecceeEEe--ecccccCeeE
Q 001178 854 GKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMED---------STIQIYNVRVDEVKTK--LKGHQKHITG 922 (1131)
Q Consensus 854 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---------g~I~iwd~~~~~~~~~--~~~h~~~V~~ 922 (1131)
..+.+||+.+++-...-..+..+-...+..- ++++++.|+.. ..+.+||..+.+.... +......-.+
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 3488899888653332111222212222222 56777766531 3577888776543322 1111111112
Q ss_pred EEEccCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-e-----CCeEEEE
Q 001178 923 LAFSTNLNILVSSGSDAQ-----LIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H-----ETQLAIY 991 (1131)
Q Consensus 923 l~~s~dg~~l~s~~~Dg~-----v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~-----d~~i~vw 991 (1131)
+ ..+++.++.++.++. ...++..+.......... ....-..+... ++..++.+ . ...+..|
T Consensus 98 ~--~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~ 169 (288)
T d1zgka1 98 G--VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-----TRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECY 169 (288)
T ss_dssp E--EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-----SCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEE
T ss_pred c--ccceeeEEecceecccccceeeeeccccCccccccccc-----cccccceeeee-eecceEecCcccccccceEEEe
Confidence 2 225666666655443 445666664432211111 10111222223 33444443 1 3457888
Q ss_pred eCCCcccceeeecCCCCCCCeEEEEEccCCCEEEEEecC-----CcEEEEECCCCceeeEecCCccccCCCCCCCCcccc
Q 001178 992 DGSKMECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTD-----GSIGVFDADSLRLRCRIAPSAYMSQASPNSSQTVFP 1066 (1131)
Q Consensus 992 d~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1066 (1131)
|..+.+....-.... ...-.+++ ..++++++.|+.+ .....||..+.+... +... +.. ....
T Consensus 170 d~~~~~~~~~~~~~~--~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~-~~~~---p~~------r~~~ 236 (288)
T d1zgka1 170 YPERNEWRMITAMNT--IRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPM---KHR------RSAL 236 (288)
T ss_dssp ETTTTEEEECCCCSS--CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCC---SSC------CBSC
T ss_pred ecccccccccccccc--cccccccc-ceeeeEEEecCccccccccceeeeeecceeeec-ccCc---cCc------ccce
Confidence 887654332211111 11111222 2356666666644 356777877655332 2111 111 0111
Q ss_pred EEEEEcCCCCCeEEEEecCCc-----EEEEecCCCccccccccCCCC
Q 001178 1067 LVVTSHPQEPNQLAVGLTDGS-----VKVIEPSETERKWGVAVPVDN 1108 (1131)
Q Consensus 1067 ~~v~~~p~~~~~l~s~~~Dg~-----v~iW~~~~~~~~w~~~~p~~~ 1108 (1131)
..+.. ++++++.||.++. |.+||+.... |....|...
T Consensus 237 ~~~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~ 278 (288)
T d1zgka1 237 GITVH---QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSEVTRMTS 278 (288)
T ss_dssp EEEEE---TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSS
T ss_pred EEEEE---CCEEEEEecCCCCeecceEEEEECCCCE--EEECCCCCC
Confidence 11221 5678888887664 6778887754 988866543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.27 E-value=2.7 Score=37.72 Aligned_cols=218 Identities=11% Similarity=0.118 Sum_probs=114.3
Q ss_pred CCcEEEEEcCCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 001178 359 HHTLLVVGCGDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAWSPDGNFIGVAFTKHLIHLYTY 438 (1131)
Q Consensus 359 g~~llasg~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~ 438 (1131)
+..+++++...|.|.++-+..++.+.-. ..+|.. +++.+ .+-|..+.+-|+
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLt----------------------kePI~~---~~~Pk----~~ldfi~f~RDV 75 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLN----------------------REPINS---VLDPH----YGVGRVILVRDV 75 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECC----------------------SSCCSE---ECEEC----TTBSEEEEEEEC
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEe----------------------cccccC---cCCCc----cCcceEEEEeeh
Confidence 3347888888999999999888766411 112211 11100 011222334444
Q ss_pred cCCCccceeee-----------eecCcCCeeEEEEecCCCceEEEEEcCCCcEEEEeCCCceeEEecCC--ccCeEEE--
Q 001178 439 QGSNDLCQSLE-----------IDAHVGGVNDLAFSYPNKQLCIVTCGDDKLIRVWDLSGRKLFQFEGH--EAPVYSV-- 503 (1131)
Q Consensus 439 ~~~~~~~~~~~-----------~~~h~~~V~~l~~s~d~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~h--~~~v~~~-- 503 (1131)
..|+..+..+. +. ...+|.-+....|++. .+++|+......+|-+.|..+.++..- -+.|+.+
T Consensus 76 ~kGkE~Hai~~~Nlk~~GEE~~i~-spk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~ 153 (313)
T d2hu7a1 76 SKGAEQHALFKVNTSRPGEEQRLE-AVKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRG 153 (313)
T ss_dssp STTSCCEEEEEEETTSTTCEEECT-TSCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEET
T ss_pred hcCcceeeEEEEccCCCCeeeEec-CCceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccC
Confidence 44443322211 11 1223444455556666 677777777778888666666655421 1223333
Q ss_pred ------eecccCCccEEEEEec-CCeEEEEeCCCCceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCC
Q 001178 504 ------CPHQKENIHFIFSTAV-DGKIKAWLYDNVGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESE 576 (1131)
Q Consensus 504 ------~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~ 576 (1131)
.+.. ++..-++++.. .|.++++ ....+.++...+.++.+. ++.-.. -+.....-+|.++
T Consensus 154 d~I~G~g~~~-g~~~sfF~adl~SG~lri~-----------tpkeGS~~~ay~~~gnKV-~sdyEt-~gEsywit~D~~s 219 (313)
T d2hu7a1 154 DLIAGLGFFG-GGRVSLFTSNLSSGGLRVF-----------DSGEGSFSSASISPGMKV-TAGLET-AREARLVTVDPRD 219 (313)
T ss_dssp TEEEEEEEEE-TTEEEEEEEETTTEEEEEE-----------CCSSEEEEEEEECTTSCE-EEEEEE-SSCEEEEEECTTT
T ss_pred CeEEEEeeec-CCcceEEEEecccCCEEEe-----------cCCCCcccceeEccCcee-eeccCC-CCceEEEEEeccc
Confidence 1111 11112222222 4444444 444556777777776665 433322 2234444668887
Q ss_pred CeeeEEE------ecccCCceEEEEEeCCCCEEEEEEcCCcEEEEEcCCCeEE
Q 001178 577 GALKRTY------IGFRKKSAGVVQFDTTRNRILAAGEDNQIKFWDMDNVNML 623 (1131)
Q Consensus 577 ~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 623 (1131)
++..+.- .......+.-+-+.|+++.++.+-.||.=.+|. +|+.+
T Consensus 220 ~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i 270 (313)
T d2hu7a1 220 GSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV 270 (313)
T ss_dssp CCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred CceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence 7654321 111222455567899999989999999999886 45544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=91.10 E-value=8.5 Score=38.52 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=102.9
Q ss_pred EEEEEecCCCcEEEEEc-----------CCCeEEEEECCCCcccccccceeecccccccceeceeccCCCCCEEEEEE--
Q 001178 351 VSMDFHPFHHTLLVVGC-----------GDGEITLWDVGLRERLVSKPFKIWDMSNCSMMLQAAIVKDSSISVSRVAW-- 417 (1131)
Q Consensus 351 ~~~~fspdg~~llasg~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-- 417 (1131)
-.++..|||..++++|. ..|.|.++|+.+.+.... .+.+ . ........+..| .+.+
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~---~--~~~~~~~~f~Ph-----Gi~l~~ 106 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEI---I--GNTLDISSFNPH-----GISTFI 106 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEE---E--CSSSCGGGCCEE-----EEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEe---c--CCCCCCcceecc-----ceeEEE
Confidence 36788899976555542 138899999876543321 1110 0 000000012222 3333
Q ss_pred cCCCC-EEEEEe---CCCeEEEEEecCCCc-cceeeeeec-CcCCeeEEEEecCCCceEEEEEc--C-------------
Q 001178 418 SPDGN-FIGVAF---TKHLIHLYTYQGSND-LCQSLEIDA-HVGGVNDLAFSYPNKQLCIVTCG--D------------- 476 (1131)
Q Consensus 418 spdg~-~las~~---~d~~i~vwd~~~~~~-~~~~~~~~~-h~~~V~~l~~s~d~~~~~l~s~s--~------------- 476 (1131)
.+||+ +|++.. ...+|.+|++..+.. +....++.. .....+++++..++. +++|-. .
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~ 184 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG 184 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence 45676 455543 456899999875442 222222221 234578999999998 677731 1
Q ss_pred CCcEEEEeCCCceeEEecCCccCeEEEeecccCCccEEEEEecCCeEEEEeCCCCceeEE--ecCCCceEEEEEEcc-CC
Q 001178 477 DKLIRVWDLSGRKLFQFEGHEAPVYSVCPHQKENIHFIFSTAVDGKIKAWLYDNVGSRVD--YDAPGLWCTTMLYSA-DG 553 (1131)
Q Consensus 477 d~~i~iwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~-~g 553 (1131)
-++..+|..+++........-...+.++++++.+ .++++-+..++|+.|++........ ...-....-.+.+.+ +|
T Consensus 185 ~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g 263 (340)
T d1v04a_ 185 LAWSFVTYYSPNDVRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 263 (340)
T ss_dssp CCCEEEEEECSSCEEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred CCceeEEEEcCCceEEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCC
Confidence 1233444422233333333345678888865432 3445556788999998875543221 112334466777876 45
Q ss_pred CEEEEE
Q 001178 554 SRLFSC 559 (1131)
Q Consensus 554 ~~l~~~ 559 (1131)
.+.+.+
T Consensus 264 ~lwva~ 269 (340)
T d1v04a_ 264 DLWVGC 269 (340)
T ss_dssp CEEEEE
T ss_pred EEEEEE
Confidence 555444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=1.3 Score=43.61 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=80.5
Q ss_pred eEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCc-----EEEEEeecceeEEeec--ccccCeeEEEEcc
Q 001178 855 KVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDST-----IQIYNVRVDEVKTKLK--GHQKHITGLAFST 927 (1131)
Q Consensus 855 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~-----I~iwd~~~~~~~~~~~--~h~~~V~~l~~s~ 927 (1131)
.+.+||..+.+....-..+...-...+... ++++++.|+.++. ...++..+..-..... ........+ . .
T Consensus 71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~-~ 147 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVA-V-L 147 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE-E-E
T ss_pred hhhhcccccccccccccccceecceecccc-ceeeEEecceecccccceeeeeccccCccccccccccccccceee-e-e
Confidence 477888877655432221122211122222 5667766665544 3345555443222111 111111112 2 2
Q ss_pred CCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEEE-e-----CCeEEEEeCCCc
Q 001178 928 NLNILVSSGSD-----AQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLVN-H-----ETQLAIYDGSKM 996 (1131)
Q Consensus 928 dg~~l~s~~~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~-----d~~i~vwd~~~~ 996 (1131)
++..++.++.+ ..+..||..+.+......... .......+.. .+..++.+ . -.....||..+.
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~ 221 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-----IRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE 221 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-----CCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eecceEecCcccccccceEEEeecccccccccccccc-----ccccccccce-eeeEEEecCccccccccceeeeeecce
Confidence 44556666553 357888887754322211111 1112223332 33444442 2 235677887765
Q ss_pred ccceeeecCCCCCCCeEEEEEccCCCEEEEEecCC-----cEEEEECCCCc
Q 001178 997 ECIRQWVPQDVLSSPISSAAYSCNSQLIYATFTDG-----SIGVFDADSLR 1042 (1131)
Q Consensus 997 ~~~~~~~~~~~~~~~v~~i~~s~dg~~l~s~~~dg-----~i~vwd~~~~~ 1042 (1131)
+....-..... .... +++ ..++++++.|+.++ .|.+||+++.+
T Consensus 222 ~~~~~~~~p~~-r~~~-~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 222 TWTFVAPMKHR-RSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp EEEECCCCSSC-CBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeecccCccCc-ccce-EEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 54332211110 1111 222 33788888887554 37889998765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.52 E-value=4.5 Score=41.09 Aligned_cols=137 Identities=10% Similarity=-0.020 Sum_probs=83.6
Q ss_pred CeeEEEecCCCCEEEEEeCCeEEEEECCCceeEEEEeCCCCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeEEeec
Q 001178 835 VVPCVALSKNDSYVMSAGGGKVSLFNMMNFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVKTKLK 914 (1131)
Q Consensus 835 ~i~~l~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 914 (1131)
.|..++|+.| .+++..++.+..++..+............++..+.+.| . .++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccC
Confidence 5788999754 57777788888898877555544444456688888877 3 46667789999999998775432211
Q ss_pred -----ccccCeeEEEEccCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCCCCCceEEEEcCCCcEEEE
Q 001178 915 -----GHQKHITGLAFSTNLNILVSSGSDAQLIFWNTDTWEKRKSIAIQLPAGKLPVGETRVQFHSDQVRLLV 982 (1131)
Q Consensus 915 -----~h~~~V~~l~~s~dg~~l~s~~~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 982 (1131)
.-.+.+.+++|++.|..++++..++.-.--++.... .+..+. .....+.+|.|-....++++
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~-----~~~~p~-~~~~~v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPS-----ELEELP-VEEYSPLSVTILSPQDFLAV 229 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCH-----HHHTSC-TTTSEEEEEEESSSSEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCcc-----ccCCCc-CCCcceeEEEEecCceEEEE
Confidence 123557778888777777776433211111111100 011111 11246788888888877775
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=87.59 E-value=15 Score=36.56 Aligned_cols=187 Identities=11% Similarity=0.055 Sum_probs=99.0
Q ss_pred EEEEcCCCCEEEEEeC------------CCeEEEEEecCCCccceeeeeecCc-----CCeeEEEE--ecCCCceEEEEE
Q 001178 414 RVAWSPDGNFIGVAFT------------KHLIHLYTYQGSNDLCQSLEIDAHV-----GGVNDLAF--SYPNKQLCIVTC 474 (1131)
Q Consensus 414 ~~~~spdg~~las~~~------------d~~i~vwd~~~~~~~~~~~~~~~h~-----~~V~~l~~--s~d~~~~~l~s~ 474 (1131)
.|+..|||..+++++. .|.|.++|+++.........+.+.. -.-..+.+ .+||+. +|+..
T Consensus 39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~vv 117 (340)
T d1v04a_ 39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLLVV 117 (340)
T ss_dssp EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEEEE
T ss_pred eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEEEE
Confidence 5778899887766542 3889999998765433222222211 12233433 456664 34443
Q ss_pred ---cCCCcEEEEe--CCCceeEE---ecC-CccCeEEEeecccCCccEEEEEe--c-------------CCeEEEEeCCC
Q 001178 475 ---GDDKLIRVWD--LSGRKLFQ---FEG-HEAPVYSVCPHQKENIHFIFSTA--V-------------DGKIKAWLYDN 530 (1131)
Q Consensus 475 ---s~d~~i~iwd--~~~~~~~~---~~~-h~~~v~~~~~~~~~~~~~l~s~s--~-------------dg~i~~wd~~~ 530 (1131)
....+|-+|+ ..+..+.- +.. .....+.+++. .++.+++|-. . -+...+|..+.
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~ 195 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 195 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence 3456788888 33433322 221 12345666664 3445666621 0 12334444444
Q ss_pred CceeEEecCCCceEEEEEEccCCCEEEEEeecCCCCceEEEEeCCCCeeeEEEe-cccCCceEEEEEeCCCCEEEEEE
Q 001178 531 VGSRVDYDAPGLWCTTMLYSADGSRLFSCGTSKEGDSHLVEWNESEGALKRTYI-GFRKKSAGVVQFDTTRNRILAAG 607 (1131)
Q Consensus 531 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~ 607 (1131)
........ .-...+.++++||+++|+++.. ..++|+.|++.....+.... ..-......+.+.+.+..+.+++
T Consensus 196 ~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 196 NDVRVVAE-GFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SCEEEEEE-EESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CceEEEcC-CCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 33332222 2235789999999999988864 36789988876433222111 11222455577776444444443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.32 E-value=12 Score=39.23 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCeeEEEEeCCCCcEEEEEeCCCcEEEEEeecceeE--Eeec------ccccCeeEEEEccC
Q 001178 874 PPASTFLAFHPQDNNIIAIGMEDSTIQIYNVRVDEVK--TKLK------GHQKHITGLAFSTN 928 (1131)
Q Consensus 874 ~~~i~~l~~s~~~~~~la~g~~dg~I~iwd~~~~~~~--~~~~------~h~~~V~~l~~s~d 928 (1131)
-....+|+|.| +++++++--..|.|++++..+++.. ..+. .-.+....|+|+|+
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35678999999 8888876655799999987766432 2221 12345788999986
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.97 E-value=0.52 Score=40.87 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=50.9
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccccccccccccC
Q 001178 67 RYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY 133 (1131)
Q Consensus 67 ~~~~~~~~~i~~~~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 133 (1131)
++.. ++|.|+-+.||||+..|....|..++++--.-+.....+++++|..+....++.+.+.....
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~ 106 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF 106 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHH
Confidence 4444 99999999999999999999999999976544444567889999988777666555544333
|