Citrus Sinensis ID: 001219

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120-
MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHcccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEcHHHHcccccccEEEEEEEccHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEcccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHccccccccccEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEcEEccccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHcccccEEEccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEEcHccccccHHHHHHccccEEEEEcccccccccccccccccccccccEEccccHEcEccHHHEHccccEEEEEcccccccccHHHcccccccccccccccccHHcccEEEEEccHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccEEEEEEcccccccccEEEEccccccccccccccEEcHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHcccEEEEEEEccccEEHEEHcccccccccEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEcccccEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHcccccEccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHccccHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
maasvppgaprqqppppppnynpnlqqnpnslsdnfqnlnlnrpvsmpnsgprptpfaqspqfpvtapsppmsrpgppppgalsrpagtpqqsfppnvapvrpfgppvgqslpfgsrpppgsfpssmggggpvgvptsgvppssafpssgsltrpvgatpgarpfplasslpfssglnvapsgasdgvtsngpmafaasggprfppagsgaqqtrtppagppsmltsarspqqspsmrfppvqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgahtwsaqpvgpsssipgsaqpsrmfgmppplqtqtmtnmppamgqtgapmpasskidpqqiprpvpsstvvlydtregnqanppppatseyivrdmgncsprymrctisqipctndlltTSGMQLALLvqplalphpseepiqivdfgdmgpvrcsrCKAYINPFMKFIDQGRRFICSlcgftdetprdyhcnlgpdgrrrdaddrpelcrgtvefvatkeymvrdpmpAVFFFLIDVSMNALQTGATAAACSAISQVIsdlpegprtmvgiatfdSTIHFYNLKRAlqqplmlivpdvedvytplqsdiivpvSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVlpsvgigalsareaegrsnissgekethkllqPADKTLKAMAIEFAEYQVCVDVFITTQtyvdiasisvipkttggqvyyyypfsalsdpaklyndlrwnitrpqgFEAVMRVRCSQGIQVQEYHGnfckriptdidlpaidcNKAIMVTLKhddklqdgsecaFQCALLYTTVygqrrirvttlslpctsnlsnlyrsadldTQFTCFMKQaaseipstplaNVREQMMNLCVNALVSYRKFCATvsssgqlilpealkllPLYTLALIKStglrtdgriddrsFWITYVSSvsipfavpfvyprmvaihdldkgedgsiippflplssehvsdegIYLLENGEDALIYIGssvdssilhqlfgissvdevptqfvlqqydnplskkLNDVVNEIRRQRCSYLRLklckkgdpsgmVFFSYLVedkiptggqsYVEFLINIHRQIQLKMS
maasvppgaprqqpppPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTregnqanppppatseYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCnlgpdgrrrdaddrpelCRGTVefvatkeymvrDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEgrsnissgekethkllQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIasisvipkttggQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTtlslpctsnlsNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKStglrtdgriDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQqydnplskklndVVNEIRRQRCSylrlklckkgdpSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
MAASVppgaprqqppppppnynpnlqqnpnSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTapsppmsrpgppppgalsrpagTPQQSFPPNVAPVRPFGPPVGQslpfgsrpppgsfpssmggggpvgvptsgvppssAFPSSGSLTRPVGATPGARpfplasslpfssGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMqlallvqplalpHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLgpdgrrrdaddrpELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTaesafgaavkaaflalksTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQlilpealkllplytlalikSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNL*************ELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL***************************TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAI**********************VSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQI*****
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************STVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPD******DDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIG*********************KLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIP*****NVREQMMNLCVNALVSYR**************PEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLK**
***************PPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPV***************************SFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGV************TRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRF***********************************************************************************************VSPFGAHTWSA*************QPSRMFGMPPPLQTQTMTNMPPAMG*************PQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA*************KETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
*****************************************************************TAPS*******PPP****SRPAG****S*PPNVAPVRPFGPPVGQ*********P******MGGGG********************************************************************************************************************************************************SGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTG*****SSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALS*****************HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1121 2.2.26 [Sep-21-2011]
Q9M0811080 Protein transport protein yes no 0.938 0.974 0.655 0.0
Q9M2911096 Protein transport protein no no 0.743 0.760 0.718 0.0
P539921094 Protein transport protein yes no 0.908 0.930 0.352 1e-163
Q9SFU01038 Protein transport protein no no 0.633 0.684 0.366 1e-143
O954871268 Protein transport protein no no 0.624 0.552 0.357 1e-127
A6QNT81099 Protein transport protein no no 0.635 0.647 0.348 1e-126
O954861093 Protein transport protein no no 0.635 0.651 0.341 1e-125
Q3U2P11090 Protein transport protein no no 0.635 0.653 0.344 1e-125
A1CUC3919 Protein transport protein N/A no 0.703 0.858 0.323 1e-116
Q1E6U9932 Protein transport protein N/A no 0.616 0.741 0.337 1e-114
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3 Back     alignment and function desciption
 Score = 1409 bits (3646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1149 (65%), Positives = 861/1149 (74%), Gaps = 97/1149 (8%)

Query: 1    MAASVPPGAPR--QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPN--------- 49
            M A VPPGAPR   Q    PPN+ P  Q N N+L+DN QNL+LNRP  M           
Sbjct: 1    MVAPVPPGAPRPNSQQNSGPPNFYPGSQGNSNALADNMQNLSLNRPPPMMPGSGPRPPPP 60

Query: 50   --SGPRPTPFAQSPQF--PVTAPSPPMSRPGPPPPGALSRPAGTPQQS----FPPNVAPV 101
                P+P P  QSP +  P   PSP MSRPGPP    ++RP G P  S    F  NV   
Sbjct: 61   FGQSPQPFP-QQSPSYGAPQRGPSP-MSRPGPP--AGMARPGGPPPVSQPAGFQSNVPLN 116

Query: 102  RPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSG-SLTRPVGATP 160
            RP GPP  Q   FGSRP   S P     GGPV  P +    SS FP+ G S +   G  P
Sbjct: 117  RPTGPPSRQP-SFGSRP---SMP-----GGPVAQPAAS---SSGFPAFGPSGSVAAGPPP 164

Query: 161  GARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPR---FPPAGSGAQQTRTP 217
            G+RP    S  P  SG+++ PSG   G  SNG     + G PR   FP  G+     + P
Sbjct: 165  GSRPMAFGSPPPVGSGMSMPPSGMIGGPVSNGHQMVGSGGFPRGTQFP--GAAVTTPQAP 222

Query: 218  PAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFS--AAPQSAPP--F 273
               PPS          +P  R PP         P  +   S  PP +   AP   PP  F
Sbjct: 223  YVRPPS----------APYARTPP--------QPLGSHSLSGNPPLTPFTAPSMPPPATF 264

Query: 274  SAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPP 333
              AP   P  SG P        GPP          SAQ V P    PG  QP R +GM P
Sbjct: 265  PGAPHGRPAVSGLP-------YGPP----------SAQ-VAPPLGFPGQMQPPR-YGMGP 305

Query: 334  PLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATS 393
             L  Q+MTN+P AMGQ GA +P  S+IDP QIPRP  SS+  +++TR+ NQANPPPPATS
Sbjct: 306  -LPNQSMTNIPTAMGQPGATVPGPSRIDPNQIPRPGSSSSPTVFETRQSNQANPPPPATS 364

Query: 394  EYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGD 453
            +Y+VRD GNCSPRYMRCTI+QIPCT DLL+TSGMQLAL+VQPLAL HPSEEPIQ+VDFG+
Sbjct: 365  DYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLALMVQPLALSHPSEEPIQVVDFGE 424

Query: 454  MGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL 513
             GPVRCSRCK YINPFMKFIDQGR+FIC+ CG+TDETPRDYHCNLGPDGRRRD D+RPEL
Sbjct: 425  GGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDETPRDYHCNLGPDGRRRDVDERPEL 484

Query: 514  CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTM 573
            CRGTVEFVATKEYMVRDPMPAV+FFLIDVSMNA+QTGATAAAC+AI QV+SDLPEGPRT 
Sbjct: 485  CRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACNAIQQVLSDLPEGPRTF 544

Query: 574  VGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIP 633
            VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPL++D++V +SECRQHLELLL+SIP
Sbjct: 545  VGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLETDVVVQLSECRQHLELLLDSIP 604

Query: 634  SMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSG 693
            +MFQ ++  ESAFGAAVKAAFLA+KS GGKL+VFQS+L SVG+GALS+REAEGR+N+S+G
Sbjct: 605  TMFQESKIPESAFGAAVKAAFLAMKSKGGKLMVFQSILCSVGVGALSSREAEGRANMSAG 664

Query: 694  EKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753
            EKE HKLLQPADKTLK MAIEFAEYQVCVD+FITTQ YVD+ASISVIP+TTGGQVY YYP
Sbjct: 665  EKEAHKLLQPADKTLKTMAIEFAEYQVCVDIFITTQAYVDMASISVIPRTTGGQVYCYYP 724

Query: 754  FSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDC 813
            FSALSDP KLYNDL+WNITRPQGFEAVMRVRCSQGIQVQEY GNFCKRIPTDIDLPA   
Sbjct: 725  FSALSDPPKLYNDLKWNITRPQGFEAVMRVRCSQGIQVQEYSGNFCKRIPTDIDLPA--- 781

Query: 814  NKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLD 873
                     HDDKLQDG+ECAFQCALLYTT+YG+RRIRVTTLSL CT+ LSNL+R+ADLD
Sbjct: 782  ---------HDDKLQDGAECAFQCALLYTTIYGERRIRVTTLSLSCTNMLSNLFRAADLD 832

Query: 874  TQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLP 933
            +QF C +KQAA+EIPS  L  V+EQ  N C+NAL +YRKFCATV+SSGQLILPEALKL P
Sbjct: 833  SQFACMLKQAANEIPSKALPLVKEQATNSCINALYAYRKFCATVTSSGQLILPEALKLFP 892

Query: 934  LYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLD-KGEDGSII 992
            LYTLAL KS GLRTDGRIDDRSFWI YVSS+S P A+P VYPRM+++HDLD K  +GS++
Sbjct: 893  LYTLALTKSVGLRTDGRIDDRSFWINYVSSLSTPLAIPLVYPRMISVHDLDVKDTEGSVL 952

Query: 993  PPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYD 1052
            PP +PLSSEH+S+EG+Y LENGED L+++G SVDS IL +LF +SS  E+P QFVLQQYD
Sbjct: 953  PPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQYD 1012

Query: 1053 NPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIPTGGQSYVEFLINI 1112
            N LSKK ND VNEIRRQRCSYLR+KLCKKG+PSGM+F SY+VED+  + G SYVEFL+ +
Sbjct: 1013 NQLSKKFNDAVNEIRRQRCSYLRIKLCKKGEPSGMLFLSYMVEDRTAS-GPSYVEFLVQV 1071

Query: 1113 HRQIQLKMS 1121
            HRQIQLKM+
Sbjct: 1072 HRQIQLKMN 1080
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3 Back     alignment and function description
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3 Back     alignment and function description
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function description
>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 Back     alignment and function description
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 Back     alignment and function description
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 Back     alignment and function description
>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 Back     alignment and function description
>sp|A1CUC3|SEC24_ASPCL Protein transport protein sec24 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1121
3594937591124 PREDICTED: protein transport protein Sec 0.965 0.962 0.726 0.0
2555423721094 Protein transport protein Sec24C, putati 0.964 0.988 0.745 0.0
2241313421080 predicted protein [Populus trichocarpa] 0.951 0.987 0.725 0.0
2241233341103 predicted protein [Populus trichocarpa] 0.914 0.929 0.696 0.0
4494589181105 PREDICTED: protein transport protein Sec 0.952 0.966 0.683 0.0
2555453861056 Protein transport protein Sec24C, putati 0.915 0.971 0.693 0.0
4436094491092 Sec24-like transport protein [Arabidopsi 0.949 0.974 0.664 0.0
3565344161085 PREDICTED: protein transport protein Sec 0.744 0.769 0.805 0.0
3341870941080 sec24-like transport protein [Arabidopsi 0.938 0.974 0.655 0.0
72701681069 putative protein [Arabidopsis thaliana] 0.898 0.942 0.654 0.0
>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1600 bits (4143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/1163 (72%), Positives = 949/1163 (81%), Gaps = 81/1163 (6%)

Query: 1    MAASVPPGAPR-QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTP-FA 58
            MAA VPPGAPR    PPPPPNYNPN Q+ P+SL++N QNL +NRP S+PNS PRP P + 
Sbjct: 1    MAAPVPPGAPRATNTPPPPPNYNPNYQRTPDSLAENMQNLQINRPPSVPNSTPRPPPSYI 60

Query: 59   QSP----QFPVTAP--------SPPMSRPGPPP---PGALSRP----AGTPQQSFPPNVA 99
            QSP      P +AP          P+SRPGP P    G L+RP    +G PQ +FPPN+A
Sbjct: 61   QSPPSHSSAPYSAPQHSAPFPRGAPVSRPGPSPGPQSGVLARPGMAPSGPPQSTFPPNMA 120

Query: 100  PVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFP------------ 147
            P RP G P+ Q+LPFGSRP  GSFPS MGG     V TS   P SAF             
Sbjct: 121  PGRPSGYPISQALPFGSRPSTGSFPSPMGGQ----VTTSSGAPPSAFASSSAAPPSAFPA 176

Query: 148  ---SSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAAS---GG 201
               S+G +  PV A PG     + +S P S+G  + PS A  G TSNGP  FA++   GG
Sbjct: 177  SGFSAGPVIPPVAARPG-----VFASSPLSTGPIIPPSSAPGGPTSNGPPMFASAALQGG 231

Query: 202  PRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAP 261
            PR+P A +  Q   TP   PP+M+ S ++P Q P+MR      +   +   N PP    P
Sbjct: 232  PRYPSADNTMQ---TPVGHPPTMM-STQAPSQPPTMR------TLLGSTAPNVPP---GP 278

Query: 262  PFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQP--VGPSSSI 319
            P   AP +A PFSAAPQ  PP SG               SP+G  TW  QP  V P  +I
Sbjct: 279  PVQTAP-TAMPFSAAPQGVPPPSG---------------SPYGLQTWPMQPRQVAPPPTI 322

Query: 320  PGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDT 379
            PGS QP RMFGMPPP   Q+M  MPPAM QTGAP+   SKIDP QIPRP+P+++V+L++T
Sbjct: 323  PGSVQPPRMFGMPPPPPNQSMAAMPPAMSQTGAPLAGPSKIDPNQIPRPIPNTSVILHET 382

Query: 380  REGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALP 439
            R+GNQANPPPPATS+YIVRD GNCSPRYMRCTI+QIPCT DLLTTSGMQLALLVQPLALP
Sbjct: 383  RQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALP 442

Query: 440  HPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLG 499
            HPSEEPIQ+VDFG+ GPVRCSRCK YINPFMKFIDQGRRFIC+LCGFTDETPRDYHCNLG
Sbjct: 443  HPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYHCNLG 502

Query: 500  PDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559
            PDGRRRDA++RPELCRGTVEFVA+KEYMVR+PMPAVFFFLIDVSMNA+QTGATAAACSAI
Sbjct: 503  PDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQTGATAAACSAI 562

Query: 560  SQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVS 619
            +QVI+DLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPLQ+D+IV +S
Sbjct: 563  TQVITDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLS 622

Query: 620  ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL 679
            ECRQHLELLLE+IP+MFQNNRTAESAFGAA++AAFLA+KSTGGKLLVFQSVLPSVGIGAL
Sbjct: 623  ECRQHLELLLENIPTMFQNNRTAESAFGAAIQAAFLAMKSTGGKLLVFQSVLPSVGIGAL 682

Query: 680  SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISV 739
            SAREAEGR+NI++GEKE HKLLQPADKTLK MAIEFAEYQVCVDVFITTQTYVDIASI+V
Sbjct: 683  SAREAEGRTNITAGEKEAHKLLQPADKTLKTMAIEFAEYQVCVDVFITTQTYVDIASIAV 742

Query: 740  IPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
            IP+TTGGQVYYYYPFSALSDPAKLYNDLRWNIT+PQGFEAVMRVRCSQG+QVQEY GNFC
Sbjct: 743  IPRTTGGQVYYYYPFSALSDPAKLYNDLRWNITKPQGFEAVMRVRCSQGLQVQEYSGNFC 802

Query: 800  KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
            +RIPTD+DLP IDC+KAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC
Sbjct: 803  RRIPTDVDLPGIDCDKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 862

Query: 860  TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSS 919
            TS LSNL+RSADLDTQF CF+KQAASEIPSTPL+ VREQ+ NLC+N L SYRKFCATVSS
Sbjct: 863  TSMLSNLFRSADLDTQFACFLKQAASEIPSTPLSQVREQVTNLCINILHSYRKFCATVSS 922

Query: 920  SGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVA 979
            SGQLILPEALKLLPLYTLALIKS GLRTDGRIDDRSFWI YVS +S P A+P VYPRM+A
Sbjct: 923  SGQLILPEALKLLPLYTLALIKSIGLRTDGRIDDRSFWINYVSPLSTPLAIPLVYPRMMA 982

Query: 980  IHDLDKGE-DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISS 1038
            IHDL+  E D  +IPP +PLSSEHVSD+GIYLLENG+D LIYIG+SV+  I+ QLFGISS
Sbjct: 983  IHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIMRQLFGISS 1042

Query: 1039 VDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKI 1098
            VD +P+QFVLQQYDNPLSKKLN++VNEIRRQRCSYLR+KLC+KGD SGM+FFS++VEDK 
Sbjct: 1043 VDVIPSQFVLQQYDNPLSKKLNELVNEIRRQRCSYLRIKLCRKGDASGMLFFSFMVEDKT 1102

Query: 1099 PTGGQSYVEFLINIHRQIQLKMS 1121
               G SYVEFL++IHRQIQ+KMS
Sbjct: 1103 AI-GLSYVEFLVHIHRQIQIKMS 1124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458918|ref|XP_004147193.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255545386|ref|XP_002513753.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223546839|gb|EEF48336.1| Protein transport protein Sec24C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356534416|ref|XP_003535751.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] Back     alignment and taxonomy information
>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1121
TAIR|locus:21002021096 CEF "AT3G44340" [Arabidopsis t 0.710 0.727 0.684 0.0
ZFIN|ZDB-GENE-030131-44871241 sec24c "SEC24 family, member C 0.692 0.625 0.358 1.2e-144
UNIPROTKB|P539921094 SEC24C "Protein transport prot 0.684 0.701 0.350 7.2e-139
RGD|15977391027 Sec24c "SEC24 family, member C 0.706 0.771 0.351 1e-135
UNIPROTKB|E7EP00975 SEC24C "Protein transport prot 0.707 0.813 0.342 1.3e-135
UNIPROTKB|E1BIU01094 SEC24C "Uncharacterized protei 0.709 0.726 0.347 2.1e-135
UNIPROTKB|E1BUD81119 SEC24C "Uncharacterized protei 0.706 0.707 0.343 4.4e-135
UNIPROTKB|E2RE901096 SEC24C "Uncharacterized protei 0.712 0.729 0.348 1.2e-132
UNIPROTKB|J9JHK61119 SEC24C "Uncharacterized protei 0.706 0.707 0.344 1e-131
FB|FBgn02621261193 gho "ghost" [Drosophila melano 0.700 0.658 0.319 3.8e-130
TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2906 (1028.0 bits), Expect = 0., Sum P(4) = 0.
 Identities = 557/814 (68%), Positives = 649/814 (79%)

Query:   312 PVG-PSSSIPGS-AQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPV 369
             P G P   +P +   P  ++GM P +Q Q+MT++        +P    SKID  QIPRP 
Sbjct:   296 PYGAPPQQLPSAPGTPGSIYGMGP-MQNQSMTSV-------SSP----SKIDLNQIPRPG 343

Query:   370 PSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMXX 429
              SS+ ++Y+TR  N+ANPPPP T +YI RD GN SPRYMRCTI+QIPCT DLL+TSGM  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:   430 XXXXXXXXXXHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDE 489
                       HPSEEPIQ+VDFG+ GPVRCSRCK Y+NPFMKFIDQGR+FIC+LCG+TDE
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   490 TPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQT 549
             TPRDY CNL             ELCRGTV+FVATKEYMVRDPMPAV+FFLIDVSMNA+QT
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query:   550 GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609
             GATAAACSAI QV+SDLPEGPRT VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTP
Sbjct:   524 GATAAACSAIQQVLSDLPEGPRTFVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTP 583

Query:   610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTXXXXXXXXXXXXXXXXXXTGGKLLVFQS 669
             L++D+IV +SECRQHLE+LLESIP+MFQ +++                  TGGKL+VFQS
Sbjct:   584 LETDVIVQLSECRQHLEILLESIPTMFQESKSPESAFGAAVKAAFLAMKSTGGKLMVFQS 643

Query:   670 VLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ 729
             VLPSVGIGALS+REA+GR+N S+GEKE HKLLQPADKTL+ MAIEFAEYQVCVD+FITTQ
Sbjct:   644 VLPSVGIGALSSREADGRANASAGEKEAHKLLQPADKTLRTMAIEFAEYQVCVDLFITTQ 703

Query:   730 TYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGI 789
              YVD+ASIS IP+TTGGQVY YYPFSALSDP KLYNDLRWNITRPQGFEAVMRVRCSQGI
Sbjct:   704 AYVDMASISEIPRTTGGQVYCYYPFSALSDPPKLYNDLRWNITRPQGFEAVMRVRCSQGI 763

Query:   790 QVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRR 849
             QVQEY GNFCKRIPTDIDLPAIDC+KAIMVTLKHDDKLQDG+EC FQCALLYTT+ G+RR
Sbjct:   764 QVQEYSGNFCKRIPTDIDLPAIDCDKAIMVTLKHDDKLQDGAECGFQCALLYTTISGERR 823

Query:   850 IRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVS 909
             IRV  LS+PCT+ LSNL+RSADLD+QF C +KQAA+EIPS  L  V+EQ  N C+  L S
Sbjct:   824 IRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQAANEIPSKALPLVKEQATNDCITILHS 883

Query:   910 YRKFCATVSSSGQXXXXXXXXXXXXXXXXXXXSTGLRTDGRIDDRSFWITYVSSVSIPFA 969
             YRKFCATV+S+GQ                     GLR DGRIDDRSFWI +VSS+S P A
Sbjct:   884 YRKFCATVTSTGQLILPEALKLLPLYTLALTKGVGLRMDGRIDDRSFWINHVSSLSTPLA 943

Query:   970 VPFVYPRMVAIHDLDKGE-DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSS 1028
             +P VYPRM+A+HDLD  + + +++P  +PL SEH+SDEG+Y LENGED LIYIG SV+S 
Sbjct:   944 IPLVYPRMIAVHDLDANDNEENVVPCPIPLQSEHLSDEGVYFLENGEDGLIYIGESVNSD 1003

Query:  1029 ILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSG-M 1087
             IL +LF + S  E+P+Q+VLQ+YDN LSKK NDVVNEIRRQR SYLR+KLCKKGDP+G M
Sbjct:  1004 ILQKLFNVRSAAELPSQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNM 1063

Query:  1088 VFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS 1121
             +F SY+VED+  +GG SYV+FL+++HRQIQ K++
Sbjct:  1064 LFQSYMVEDR-GSGGASYVDFLVSVHRQIQHKLN 1096
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0030127 "COPII vesicle coat" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1597739 Sec24c "SEC24 family, member C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53992SC24C_HUMANNo assigned EC number0.35200.90810.9305yesno
Q9M081SC24B_ARATHNo assigned EC number0.65530.93840.9740yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.70.277.1
hypothetical protein (1076 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XV0440
hypothetical protein (301 aa)
     •• 0.848
estExt_fgenesh4_pg.C_LG_X0913
SubName- Full=Putative uncharacterized protein; (301 aa)
     •• 0.847
estExt_fgenesh4_pg.C_LG_IX1026
hypothetical protein (1105 aa)
     •• 0.818
gw1.I.1579.1
hypothetical protein (1105 aa)
     •• 0.816

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 1e-165
cd01479244 cd01479, Sec24-like, Sec24-like: Protein and membr 1e-102
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 2e-92
cd01468239 cd01468, trunk_domain, trunk domain 2e-84
PTZ003951560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 1e-46
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 1e-32
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 9e-22
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-21
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-20
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-15
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 2e-15
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 8e-14
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-13
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 9e-13
PTZ00395 1560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 2e-12
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-12
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 8e-12
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 1e-11
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-10
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 4e-10
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-08
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 6e-08
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 2e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 3e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 3e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 3e-07
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-07
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 6e-07
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 6e-07
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 1e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-06
PHA033071352 PHA03307, PHA03307, transcriptional regulator ICP4 3e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 3e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-06
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 4e-06
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 4e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-06
pfam0062676 pfam00626, Gelsolin, Gelsolin repeat 5e-06
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 6e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 7e-06
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 1e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 2e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 2e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-05
pfam04652315 pfam04652, DUF605, Vta1 like 3e-05
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 3e-05
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 8e-05
PRK14959624 PRK14959, PRK14959, DNA polymerase III subunits ga 9e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 1e-04
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 1e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 2e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 2e-04
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 2e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 3e-04
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 3e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-04
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 4e-04
pfam07271279 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 4e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 5e-04
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 5e-04
PHA03379935 PHA03379, PHA03379, EBNA-3A; Provisional 6e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 7e-04
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 8e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 9e-04
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
PRK14959624 PRK14959, PRK14959, DNA polymerase III subunits ga 0.001
pfam0154176 pfam01541, GIY-YIG, GIY-YIG catalytic domain 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.002
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.002
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 0.002
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK102631355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.002
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.002
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.003
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.003
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.004
pfam04652315 pfam04652, DUF605, Vta1 like 0.004
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.004
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.004
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.004
PLN03209576 PLN03209, PLN03209, translocon at the inner envelo 0.004
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  510 bits (1315), Expect = e-165
 Identities = 299/869 (34%), Positives = 467/869 (53%), Gaps = 52/869 (5%)

Query: 268  QSAPPFSA-APQSTPPFSGAPSFPAPSPQGPPQVSPFGA---HTWSAQPVGPSSSIPGSA 323
            +SA P  A A  S       P    P  Q   +     A   H   A    PS   P + 
Sbjct: 25   KSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTGANNPAPSVMSP-AF 83

Query: 324  QPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGN 383
            Q  + F  P        T   P       P+      + Q  P         + D     
Sbjct: 84   QSQQKFSSPYGGSMADGTAPKPTN-----PLVPVDLFEDQPPP---------ISDLFLPP 129

Query: 384  QANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSE 443
                PP  T+     +  NCSP+Y+R T+  IP TNDLL  S +   L+++P    +P E
Sbjct: 130  PPIVPPLTTNFVGS-EQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEE 188

Query: 444  EPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGR 503
            +P+ +V+  D   VRC RC++YINPF++FI+QGR++ C++C   ++ P  +    GP+  
Sbjct: 189  DPVPLVE--DGSIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDP 246

Query: 504  RRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVI 563
            R D   RPEL  G V+F+A KEY +R P P V+ FLIDVS  A++ G   AA  AI + +
Sbjct: 247  RSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENL 306

Query: 564  SDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS-DIIVPVSEC 621
              +P   PRT + I  FDS++HF+ L   L +  MLIV D+++ + P  S   ++P+  C
Sbjct: 307  DQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQ-MLIVSDLDEPFLPFPSGLFVLPLKSC 365

Query: 622  RQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA 681
            +Q +E LL+ +P +FQ+N++ ++A G A+KAA   +  TGGK++VF S LP++GIG L  
Sbjct: 366  KQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQL 425

Query: 682  REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP 741
            RE          +KE   LL   D   K  AIE ++  + VD+F+T++ Y+D+A++S + 
Sbjct: 426  RE----------DKE-SSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLC 474

Query: 742  KTTGGQVYYYYPFSA--LSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
            + TGGQ Y+Y  FSA   +D  KL NDL  +++   G+EAVMRVRCS G++V  ++GNF 
Sbjct: 475  RYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFF 534

Query: 800  KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
             R         +  + +++V    D+KL   S+  FQ ALLYT   G+RRIRV  LSLP 
Sbjct: 535  NRSSDLCAFSTMPRDTSLLVEFSIDEKLM-TSDVYFQVALLYTLNDGERRIRVVNLSLPT 593

Query: 860  TSNLSNLYRSADLDTQFTCFM-KQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVS 918
            +S++  +Y SAD      C + K+A+++  ++ L   R  +    V+ L +Y+K     +
Sbjct: 594  SSSIREVYASADQLA-IACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSN 652

Query: 919  SSGQLILPEALKLLPLYTLALIKSTGLRTDG-RIDDRSFWITYVSSVSIPFAVPFVYPRM 977
            +S QL LP  LKLLPL  LAL+KS+  R+     D R   +  ++S+ +   +  +YP +
Sbjct: 653  TSTQLPLPANLKLLPLLMLALLKSSAFRSGSTPSDIRISALNRLTSLPLKQLMRNIYPTL 712

Query: 978  VAIHDL--DKG---EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQ 1032
             A+HD+  + G   E   ++P  +  +S  +   G+YL++ G+   ++ G     S+L  
Sbjct: 713  YALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQD 772

Query: 1033 LFGISSVDEVPT-QFVLQQYDNPLSKKLNDVVNEIRRQ-RCSYLRLKLCKKG-DPSG-MV 1088
            LFG+ S+ ++P+ +F L    N  ++++ +++ E+R     S L L L + G DPS  + 
Sbjct: 773  LFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLW 832

Query: 1089 FFSYLVEDKIPTGGQSYVEFLINIHRQIQ 1117
            FFS LVEDK      SY+++L  +H +I+
Sbjct: 833  FFSTLVEDKT-LNIPSYLDYLQILHEKIK 860

Length = 861
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|216559 pfam01541, GIY-YIG, GIY-YIG catalytic domain Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1121
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
PTZ003951560 Sec24-related protein; Provisional 100.0
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PLN00162761 transport protein sec23; Provisional 100.0
KOG1986745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 99.84
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 99.82
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.5
PRK13685326 hypothetical protein; Provisional 98.66
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.55
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.46
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.39
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.39
TIGR00868863 hCaCC calcium-activated chloride channel protein 1 98.38
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.36
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.36
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.35
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.32
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.12
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.11
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.11
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.1
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.03
cd01470198 vWA_complement_factors Complement factors B and C2 98.0
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 97.95
PHA032473151 large tegument protein UL36; Provisional 97.92
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 97.88
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.84
PF13768155 VWA_3: von Willebrand factor type A domain 97.83
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 97.82
PHA032473151 large tegument protein UL36; Provisional 97.77
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 97.74
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.73
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 97.71
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.68
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.66
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.66
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.64
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.64
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.62
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.6
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 97.56
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.52
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.51
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.47
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 97.42
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.38
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.13
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 97.1
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.99
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 96.94
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 96.75
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 96.72
KOG0443827 consensus Actin regulatory proteins (gelsolin/vill 96.3
COG4245207 TerY Uncharacterized protein encoded in toxicity p 96.06
KOG2884259 consensus 26S proteasome regulatory complex, subun 95.57
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 95.47
TIGR00578584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 95.15
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 95.0
KOG0443 827 consensus Actin regulatory proteins (gelsolin/vill 94.07
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 93.67
smart00187423 INB Integrin beta subunits (N-terminal portion of 93.56
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 93.0
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 91.58
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 91.28
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 91.28
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 91.1
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 90.91
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 90.27
KOG2807378 consensus RNA polymerase II transcription initiati 88.68
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 88.25
COG2425437 Uncharacterized protein containing a von Willebran 88.0
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 85.49
PRK10997487 yieM hypothetical protein; Provisional 80.1
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-197  Score=1710.12  Aligned_cols=762  Identities=52%  Similarity=0.900  Sum_probs=735.0

Q ss_pred             CCCCCCCCCCCCCCCccCCccccccCC-CCCCCCCCCCCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEE
Q 001219          355 PASSKIDPQQIPRPVPSSTVVLYDTRE-GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLV  433 (1121)
Q Consensus       355 ~~~~~idp~~iP~P~~~~~~~~~~t~~-~~~~~~PP~~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv  433 (1121)
                      +.++|+||++||+|+++...+.+.++. .....+||++||+|++.|||||||||||||+|+||+|.|+++.++||||+||
T Consensus       236 ~~~~rldp~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvI  315 (1007)
T KOG1984|consen  236 PPPQRLDPNAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVI  315 (1007)
T ss_pred             CccccCChhhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEe
Confidence            366899999999999885555444442 3445689999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcccccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q 001219          434 QPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL  513 (1121)
Q Consensus       434 ~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL  513 (1121)
                      +|||.+++.|+++++||+++.+++||+||||||||||+|+++||+|+||||+.+|+++++||++|+++|||+|+++||||
T Consensus       316 qPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL  395 (1007)
T KOG1984|consen  316 QPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPEL  395 (1007)
T ss_pred             cccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEEeccccccC--CCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCceEEEEEeCCEEEEEecCC
Q 001219          514 CRGTVEFVATKEYMVR--DPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKR  590 (1121)
Q Consensus       514 ~~gtVEyvap~eY~~r--~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~Vhfynl~~  590 (1121)
                      ++|+|||+|+++||++  ++++++|||+||||++|+++|++.++|++|+++|++|+ ++++++|||||||++|||||+++
T Consensus       396 ~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s  475 (1007)
T KOG1984|consen  396 CLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSS  475 (1007)
T ss_pred             cccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCc
Confidence            9999999999999997  89999999999999999999999999999999999999 68899999999999999999999


Q ss_pred             CCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhc-CCeEEEEec
Q 001219          591 ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-GGKLLVFQS  669 (1121)
Q Consensus       591 ~~~~pqmlVvsDldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-GGkIivF~s  669 (1121)
                      ++++++|+||+|++|+|+|+.++|||+..||+..|+.|||+|+.||.+.+.+++|+|+||++|.++||.. ||||+||++
T Consensus       476 ~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s  555 (1007)
T KOG1984|consen  476 NLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHS  555 (1007)
T ss_pred             cccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987 999999999


Q ss_pred             CCCCcCcc-cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEE
Q 001219          670 VLPSVGIG-ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQV  748 (1121)
Q Consensus       670 g~Pt~GpG-~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v  748 (1121)
                      .+||+|.| +|+.|+|..    +++++||++++.+++++|++||++|++.|||||||++...|+|+|+|+.+++.|||++
T Consensus       556 ~Lpt~g~g~kl~~r~D~~----l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~v  631 (1007)
T KOG1984|consen  556 VLPTAGAGGKLSNRDDRR----LIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQV  631 (1007)
T ss_pred             ccccccCcccccccchhh----hhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCcee
Confidence            99999986 999988866    8899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCchhHHHHHHHHhccCCccccceEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCCCC
Q 001219          749 YYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQ  828 (1121)
Q Consensus       749 ~~y~~F~~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~L~  828 (1121)
                      |+|.+|.++.|..+|.+||+|++++++||+|+||||||+||++.+|||||+++++++++|+.+|+||+++++|+|||+|+
T Consensus       632 y~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq  711 (1007)
T KOG1984|consen  632 YKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQ  711 (1007)
T ss_pred             EEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEEEecCCcEEEEEEcccccCCCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 001219          829 DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALV  908 (1121)
Q Consensus       829 ~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~iL~  908 (1121)
                      ++..++||+|||||+.+|+|||||||++++||+++.|+||++|.|+++++|+|.|+..+.++.++++|+.|+++|++||+
T Consensus       712 ~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~  791 (1007)
T KOG1984|consen  712 DGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILA  791 (1007)
T ss_pred             CCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC-CCCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCCCCC
Q 001219          909 SYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGE  987 (1121)
Q Consensus       909 ~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~-~~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~~~d  987 (1121)
                      .|||+|++..+++||||||+||+||+|+++|+||.+|+ .+++.|+|+|++.++.++++++++.+|||||+++|+++.+|
T Consensus       792 ~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~d  871 (1007)
T KOG1984|consen  792 SYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRPQEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIED  871 (1007)
T ss_pred             HHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccccccccchhHHHHHHhhcccHHhhhhhhccceeeeecccccc
Confidence            99999999999999999999999999999999999999 89999999999999999999999999999999999997653


Q ss_pred             -CCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCCc-ccccCCCCcHhHHHHHHHHHH
Q 001219          988 -DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPT-QFVLQQYDNPLSKKLNDVVNE 1065 (1121)
Q Consensus       988 -~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~~-~~~lp~~dn~ls~~l~~iI~~ 1065 (1121)
                       .+..+|..|++|.|+|+.+||||||||+++|||||++|+++|+|+||+|++.++|+. ...||++||.+|+++|++|..
T Consensus       872 tl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~  951 (1007)
T KOG1984|consen  872 TLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISL  951 (1007)
T ss_pred             ccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHH
Confidence             234789999999999999999999999999999999999999999999999999994 478999999999999999999


Q ss_pred             HHHccCCcceEEEEecCCCc-HHHHHhhcccCCCCCCCCCHHHHHHHHHHHHHhhhC
Q 001219         1066 IRRQRCSYLRLKLCKKGDPS-GMVFFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS 1121 (1121)
Q Consensus      1066 lr~~r~~y~~l~ivrqg~~~-e~~f~~~LVED~~~~~~~SY~dFL~~lHk~I~~~l~ 1121 (1121)
                      ||+.|..+++++++|+|.+. |.+|.++||||+ +++.+||+||||.|||+|+++++
T Consensus       952 i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~-~~~~~sY~dyL~~~H~ki~~~l~ 1007 (1007)
T KOG1984|consen  952 IRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDR-GRNISSYVDYLCELHKKIQQKLS 1007 (1007)
T ss_pred             HHhccccccccEEEecCCCchhhhhhhhhhccc-ccCccccchHHHHHHHHHHhhcC
Confidence            99999999999999999764 689999999999 88899999999999999999974

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
3eh2_A766 Crystal Structure Of The Human Copii-Coat Protein S 1e-132
3efo_B770 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-116
3eh1_A751 Crystal Structure Of The Human Copii-Coat Protein S 1e-105
2nup_B753 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-104
3egd_B748 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-104
1m2v_B926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 2e-73
1pcx_A810 Crystal Structure Of The Copii Coat Subunit, Sec24, 3e-72
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure 
Iteration: 1

 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/753 (35%), Positives = 407/753 (54%), Gaps = 19/753 (2%)
Query: 382  GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMXXXXXXXXXXXXHP 441
            G +   PP  T+ ++V+D GN SPRY+RCT   IPCT+D+   + +             P
Sbjct: 20   GVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPP 79
Query: 442  SEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXX 501
             E    +VD G+ GP+RC+RCKAY+ PFM+FI+ GRRF C  C   ++ P  Y  +L   
Sbjct: 80   EEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHT 139
Query: 502  XXXXXXXXXXELCRGTVEFVATKEYMVRD--PMPAVFFFLIDVSMNALQTGATAAACSAI 559
                      EL  G+ EF+AT +Y   +  P P  F F+IDVS NA++TG     C  +
Sbjct: 140  GKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEEL 199
Query: 560  SQVISDLP-----EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614
              ++  LP     E     VG  T++  +HFYN+K +L QP M++V DV D++ PL    
Sbjct: 200  KSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGF 259
Query: 615  IVPVSECRQHLELLLESIPSMFQNNRTXXXXXX--XXXXXXXXXXXXTGGKLLVFQSVLP 672
            +V V+E R  +  LL+ IP MF + R                       GKL +F + LP
Sbjct: 260  LVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLP 319
Query: 673  -SVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY 731
             +   G L  R+   R  I++ +++T  L QP     + +A E      CVD+F+    Y
Sbjct: 320  IAEAPGKLKNRD--DRKLINTDKEKT--LFQPQTGAYQTLAKECVAQGCCVDLFLFPNQY 375
Query: 732  VDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQV 791
            VD+A++SV+P+ TGG VY Y  F   +D  +  +DLR ++ +  GF+AVMRVR S GI+ 
Sbjct: 376  VDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRA 435
Query: 792  QEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIR 851
             ++ G F     TD++L  +D +K + V  KHDD+L + S    QCALLYT+  GQRR+R
Sbjct: 436  VDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLR 495
Query: 852  VTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYR 911
            +  L+L C + L++LYR+ + DT      K A   + ++P+  VR+ ++  C   L  YR
Sbjct: 496  IHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYR 555
Query: 912  KFCATVSSSGQXXXXXXXXXXXXXXXXXXXSTGLRTDGRI--DDRSFWITYVSSVSIPFA 969
            K CA+ SS+GQ                   S  L+    +  DDR++    V+S+ +   
Sbjct: 556  KNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTET 615
Query: 970  VPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSI 1029
              F YPR++ +       + +  PP +  S E +S+  IYLLENG +  +++G+SV   +
Sbjct: 616  NVFFYPRLLPLT--KSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGV 673
Query: 1030 LHQLFGISSVDEVPTQF-VLQQYDNPLSKKLNDVVNEIRRQRCSYLRLKLCKKGDPSGMV 1088
            +  LF +SS  ++ +   VL   DNPLSKK+  +++ +R QR  Y++L + K+ D   M+
Sbjct: 674  VQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEML 733
Query: 1089 FFSYLVEDKIPTGGQSYVEFLINIHRQIQLKMS 1121
            F  +LVEDK  +GG SYV+FL ++H++I+  +S
Sbjct: 734  FKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 766
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1121
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 0.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-10
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-05
3efo_B770 SEC24 related gene family, member D; copii, coat p 0.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 0.0
3eh1_A751 Protein transport protein SEC24B; copii coat prote 0.0
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 0.0
2nut_A769 Protein transport protein SEC23A; human copii SEC2 1e-147
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-139
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 6e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-11
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 5e-11
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 5e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 6e-12
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-08
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 4e-07
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 1e-04
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 2e-06
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-06
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 3e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 4e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 7e-06
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 2e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 9e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 8e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 3e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 1e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 4e-04
1kxf_A264 Sindbis virus capsid protein; chymotrypsin-like se 4e-04
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 8e-04
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score =  680 bits (1755), Expect = 0.0
 Identities = 231/936 (24%), Positives = 421/936 (44%), Gaps = 57/936 (6%)

Query: 227  SARSPQQSPSMRFPPVQQSPFSAAPQN--APPFSSAPPFSAAPQSAPPFSAAPQSTPPFS 284
            S    +  P  +    Q +     P     P   +A   S      PP  A P       
Sbjct: 2    SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 285  GAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMP 344
              P+      Q     +          P+          QP     M  PLQ Q      
Sbjct: 62   LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP---NAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 345  PAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCS 404
            PA GQ  A M  + +   Q  P  + +                  P     +  ++ N S
Sbjct: 119  PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 178

Query: 405  PRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKA 464
            P Y+R T++ +P  + LL  S +   L+++P    +   +P  + + G    VRC RC++
Sbjct: 179  PDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGL--IVRCRRCRS 236

Query: 465  YINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATK 524
            Y+NPF+ FI+QGRR+ C+ C   ++ P     +       +   DR E+    +E++A K
Sbjct: 237  YMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSD--PNDPKSRYDRNEIKCAVMEYMAPK 294

Query: 525  EYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTI 583
            EY +R P PA + FLIDVS +++++G  A   + + Q +  +P    RT + I   D+ I
Sbjct: 295  EYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAI 354

Query: 584  HFYNLKR-------ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMF 636
            H++ +         +  Q  M+ + D+E+ + P  + ++V +  CRQ++E LL  IP +F
Sbjct: 355  HYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIF 414

Query: 637  QNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKE 696
            Q+N     A G A+K+A+  +   GGK++V    LP++GIG L  R   G  N     KE
Sbjct: 415  QSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNT---SKE 471

Query: 697  THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSA 756
            T +LL   D   K   I+ ++ Q+ VD+F+ ++ Y+D+AS+S + + T GQ ++Y  FS 
Sbjct: 472  TAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSG 531

Query: 757  --LSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCN 814
               +D  K   +   +I+     E VMR R S G+++  ++G+F  R         +  +
Sbjct: 532  KNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRD 591

Query: 815  KAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDT 874
            ++ +  +  D+ +        Q A+L +    QRRIR+ TL++P T +L+ +Y SAD   
Sbjct: 592  QSYLFEVNVDESIMADYCY-VQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLA 650

Query: 875  QFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLL 932
              + +  +A  +  ++ L + R  +     + L +Y+K     +++G   L L   L++ 
Sbjct: 651  IASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMF 710

Query: 933  PLYTLALIKSTGLRTDG-RIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDL-------- 983
            PL   +L K    R+     D R+  +  + S+ + + +  +YP + ++HD+        
Sbjct: 711  PLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPV 770

Query: 984  ----DKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSV 1039
                 +     ++P  +  +S      G+YL++NG +  +++G     +++  +FG   +
Sbjct: 771  QTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI 830

Query: 1040 DEVPT--QFVLQQYDNPLSKKLNDVVNEIRRQR--CSYLRLKLCKKGDPSG--------- 1086
             ++P   Q +    ++  ++++ +++N++R      +Y  L + +    S          
Sbjct: 831  FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASARE 890

Query: 1087 -----MVFFSYLVEDKIPTGGQSYVEFLINIHRQIQ 1117
                 +   S LVEDKI    +SY EFL  +  +I 
Sbjct: 891  VATLRLWASSTLVEDKIL-NNESYREFLQIMKARIS 925
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1121
3efo_B770 SEC24 related gene family, member D; copii, coat p 100.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 100.0
3eh1_A751 Protein transport protein SEC24B; copii coat prote 100.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
2nut_A769 Protein transport protein SEC23A; human copii SEC2 100.0
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.45
4fx5_A464 VON willebrand factor type A; structural genomics, 99.21
3ibs_A218 Conserved hypothetical protein BATB; structural ge 98.71
3n2n_F185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 98.35
1shu_X182 Anthrax toxin receptor 2; alpha/beta rossmann fold 98.34
1ijb_A202 VON willebrand factor; dinucleotide-binding fold, 98.27
4b4t_W268 RPN10, 26S proteasome regulatory subunit RPN10; hy 98.25
2b2x_A223 Integrin alpha-1; computational design, antibody-a 98.23
1atz_A189 VON willebrand factor; collagen-binding, hemostasi 98.23
4hqf_A281 Thrombospondin-related anonymous protein, trap; ma 98.21
1q0p_A223 Complement factor B; VON willebrand factor, MAC-1, 98.21
1v7p_C200 Integrin alpha-2; snake venom, C-type lectin, anta 98.18
4hqo_A266 Sporozoite surface protein 2; malaria, gliding mot 98.17
1pt6_A213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 98.12
2odp_A509 Complement C2; C3/C5 convertase, complement serin 98.09
1mf7_A194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 98.09
1n3y_A198 Integrin alpha-X; alpha/beta rossmann fold, cell a 98.08
2x31_A189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 98.05
1rrk_A497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 97.97
2x5n_A192 SPRPN10, 26S proteasome regulatory subunit RPN10; 97.94
1mjn_A179 Integrin alpha-L; rossmann fold, immune system; 1. 97.83
3hrz_D741 Complement factor B; serine protease, glycosilated 97.73
1jey_B565 KU80; double-strand DNA break repair, non-homologo 97.69
3zqk_A199 VON willebrand factor; blood clotting, adamts-13, 97.54
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 97.53
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 97.5
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 97.21
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 97.2
3fg7_A398 Villin-1; actin binding protein, gelsolin, actin c 97.09
1jey_A609 KU70; double-strand DNA break repair, non-homologo 96.77
2fh1_A344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 96.61
2ww8_A893 RRGA, cell WALL surface anchor family protein; IGG 96.27
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 96.25
3t3p_B472 Integrin beta-3; integrin, cell adhesion, blood cl 96.24
1j72_A347 Macrophage capping protein; actin, human, CAP G, G 96.12
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 95.98
3vi3_B454 Integrin beta-1; beta propeller fold, rossman fold 95.79
1d0n_A729 Horse plasma gelsolin; mixed alpha-beta structure, 95.58
3v4v_B503 Integrin beta-7; cell adhesion, madcam-1, membrane 95.53
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 95.04
3rag_A242 Uncharacterized protein; structural genomics, PSI- 94.73
1j72_A347 Macrophage capping protein; actin, human, CAP G, G 94.2
1d0n_A 729 Horse plasma gelsolin; mixed alpha-beta structure, 93.12
1yvr_A538 RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 92.05
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 91.3
2fh1_A344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 91.28
2iue_A212 Pactolus I-domain; membrane protein, CD, ITC, limb 88.5
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
Probab=100.00  E-value=6.3e-169  Score=1561.66  Aligned_cols=749  Identities=35%  Similarity=0.677  Sum_probs=714.3

Q ss_pred             CCCCCCccCCc-------cccccCCCCCCCCCCCCCCceeecCCCCCCCCceEeeccccCCCHHHhhhcCCceEEEEccC
Q 001219          364 QIPRPVPSSTV-------VLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPL  436 (1121)
Q Consensus       364 ~iP~P~~~~~~-------~~~~t~~~~~~~~PP~~~t~~~~~D~gN~sP~~iR~T~~~iP~t~~ll~~~~LPlgivv~Pf  436 (1121)
                      |||+|+++.+.       ..|.|...+  ..||+++++|++.|+|||+|+|||+|||+||.|++++++++||||++|+||
T Consensus         1 ~~ps~~~~~~~~~~~~~~~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl   78 (770)
T 3efo_B            1 AMGSPIQVIENDRASRGGQVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPF   78 (770)
T ss_dssp             CCCCHHHHHHHHHHHHTTSEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTT
T ss_pred             CCCchHHHHHHHHHhcCCCCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcC
Confidence            69999877333       357775433  479999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCccCc
Q 001219          437 ALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRG  516 (1121)
Q Consensus       437 a~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~g~~W~CnfC~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~g  516 (1121)
                      +++.++|.++|+||+++.+|+||+||||||||||+|+++|++|+||||+..|++|.+|++++|++|+|.|.++||||++|
T Consensus        79 ~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~  158 (770)
T 3efo_B           79 ATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLG  158 (770)
T ss_dssp             CCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCS
T ss_pred             CCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccC
Confidence            99888778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeccccc--cCCCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCCC-----CCceEEEEEeCCEEEEEecC
Q 001219          517 TVEFVATKEYM--VRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEG-----PRTMVGIATFDSTIHFYNLK  589 (1121)
Q Consensus       517 tVEyvap~eY~--~r~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~~-----~rt~VGiITFDs~Vhfynl~  589 (1121)
                      +|||++|+||+  .|+++||+|+||||||.+++++|+++++|++|+++|+.||++     +|++|||||||++||||||+
T Consensus       159 tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~  238 (770)
T 3efo_B          159 SYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVK  238 (770)
T ss_dssp             EEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECC
T ss_pred             ceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCC
Confidence            99999999999  589999999999999999999999999999999999999964     36899999999999999999


Q ss_pred             CCCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHh--cCCeEEEE
Q 001219          590 RALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKS--TGGKLLVF  667 (1121)
Q Consensus       590 ~~~~~pqmlVvsDldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~--~GGkIivF  667 (1121)
                      ..+++++|+||+|++|+|+|++++|||+++||++.|+++|++|+.+|.+++..++|+|+||++|+.+|+.  .||||++|
T Consensus       239 ~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F  318 (770)
T 3efo_B          239 SNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIF  318 (770)
T ss_dssp             TTCSSCEEEEECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CcccCceEEEecccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEE
Confidence            9999999999999999999999999999999999999999999999998888999999999999999985  79999999


Q ss_pred             ecCCCC-cCcccccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccce
Q 001219          668 QSVLPS-VGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGG  746 (1121)
Q Consensus       668 ~sg~Pt-~GpG~L~~re~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG  746 (1121)
                      ++|+|+ .|||+|+.|++++    .++++||+++++++++||++||++|+++||+||||+++.+|+|+++|+.|+++|||
T Consensus       319 ~s~lP~t~GpG~l~~r~~~~----~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG  394 (770)
T 3efo_B          319 HSSLPTAEAPGKLKNRDDKK----LVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGG  394 (770)
T ss_dssp             ECSCCCSSSTTCCCCCCCCC----CSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTC
T ss_pred             ecCCCCcCCCcccccccccc----ccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCc
Confidence            999888 8999999999866    67889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCchhHHHHHHHHhccCCccccceEEEEeCCCcEEEeeeCccccCCCCceeecCCCCCCeEEEEEEecCC
Q 001219          747 QVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDK  826 (1121)
Q Consensus       747 ~v~~y~~F~~~~d~~~L~~dL~r~ltr~~g~~a~mrVR~S~GL~V~~~~G~f~~r~~~~~~lp~id~dtSia~el~~d~~  826 (1121)
                      .+++|++|+.+.|.++|.+||+|.+++++||+|+||||||+||+|+++||||+.+++++|+++++|+|++|+|+|+|+++
T Consensus       395 ~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~  474 (770)
T 3efo_B          395 TLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDK  474 (770)
T ss_dssp             CEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSC
T ss_pred             eEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEEEEEEEEEecCCcEEEEEEcccccCCCCHHHHHhccChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 001219          827 LQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNA  906 (1121)
Q Consensus       827 L~~~~~~~~Q~AlLYT~~~GeRrIRV~Tl~lpVts~l~~vf~~~D~dai~~~laK~a~~~~~~~~l~d~R~~L~~~lv~i  906 (1121)
                      +.+...+|||+|++||+.+|+|||||||++++|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++
T Consensus       475 l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~  554 (770)
T 3efo_B          475 LSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHM  554 (770)
T ss_dssp             CBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            98777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCcccchhhhchHHHHHHHHhhccCCC--CCCCchHHHHHHHHHcCCChhhhhhcccceeEEeecCC
Q 001219          907 LVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR--TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLD  984 (1121)
Q Consensus       907 L~~Yrk~~a~~~s~gqLiLPesLklLPlyil~LlKS~~L~--~~~s~DeR~~~~~~l~s~~v~~~l~~lYPrLy~lh~l~  984 (1121)
                      |.+|||+|+..++++||+|||+||+||+|+++|+||.+|+  .++++|||++++++++++++.+++.||||+||++|++.
T Consensus       555 l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~  634 (770)
T 3efo_B          555 LACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLD  634 (770)
T ss_dssp             HHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCC
T ss_pred             HHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHHHHHHHHHCCCHHHHHHhhccceEEEeccc
Confidence            9999999988777899999999999999999999999999  58999999999999999999999999999999999986


Q ss_pred             CCCCCCCCCCccccccccccCCcEEEEEcCceEEEEecCCCCHHHHHHhhCCCCCCCCC-cccccCCCCcHhHHHHHHHH
Q 001219          985 KGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVP-TQFVLQQYDNPLSKKLNDVV 1063 (1121)
Q Consensus       985 ~~d~~~~lP~~l~LS~e~L~~dgiYLLD~G~~i~lwvG~~v~~~ll~~lFGv~s~~~i~-~~~~lp~~dn~ls~~l~~iI 1063 (1121)
                      .+  ...+|++++||.++|+++||||||+|+++|||+|++++++++++|||++++++++ ....||++||+++++||+||
T Consensus       635 ~~--~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~~~~~s~~vr~ii  712 (770)
T 3efo_B          635 VK--STMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIM  712 (770)
T ss_dssp             SS--SCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCCCSSHHHHHHHHH
T ss_pred             cc--cccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCCCCHHHHHHHHHH
Confidence            43  2347899999999999999999999999999999999999999999999999998 56789999999999999999


Q ss_pred             HHHHHccCCcceEEEEecCCCcHHHHHhhcccCCCC-CCCCCHHHHHHHHHHHHHhhhC
Q 001219         1064 NEIRRQRCSYLRLKLCKKGDPSGMVFFSYLVEDKIP-TGGQSYVEFLINIHRQIQLKMS 1121 (1121)
Q Consensus      1064 ~~lr~~r~~y~~l~ivrqg~~~e~~f~~~LVED~~~-~~~~SY~dFL~~lHk~I~~~l~ 1121 (1121)
                      ++||++|..|++|+|||||++.|.+|.++||||| + ++++||+||||+|||+|+++|+
T Consensus       713 ~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~-~~~~~~SY~dfL~~lh~~i~~~l~  770 (770)
T 3efo_B          713 GIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDK-GLYGGSSYVDFLCCVHKEICQLLN  770 (770)
T ss_dssp             HHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSC-C---CCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCccEEEEeCCCChHHHHHHhCcccC-CCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999 7 7899999999999999999985
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Back     alignment and structure
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* Back     alignment and structure
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Back     alignment and structure
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Back     alignment and structure
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1121
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 3e-76
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 3e-57
d1pd0a4173 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha 9e-37
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 2e-34
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 3e-12
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 6e-32
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 7e-23
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 9e-19
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  249 bits (637), Expect = 3e-76
 Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 13/253 (5%)

Query: 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNL- 588
           P PA + FLIDVS +++++G  A   + + Q +  +P    RT + I   D+ IH++ + 
Sbjct: 1   PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60

Query: 589 ------KRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTA 642
                 + +  Q  M+ + D+E+ + P  + ++V +  CRQ++E LL  IP +FQ+N   
Sbjct: 61  LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120

Query: 643 ESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQ 702
             A G A+K+A+  +   GGK++V    LP++GIG L  R   G  N S       +LL 
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETA---QLLS 177

Query: 703 PADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSA--LSDP 760
             D   K   I+ ++ Q+ VD+F+ ++ Y+D+AS+S + + T GQ ++Y  FS    +D 
Sbjct: 178 CQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 237

Query: 761 AKLYNDLRWNITR 773
            K   +   +I+ 
Sbjct: 238 VKFSTEFAKHISM 250
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1121
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.96
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.92
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.9
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.86
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.77
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.51
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.23
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.22
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.19
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 98.02
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 97.84
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.83
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 97.81
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 97.79
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.77
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.61
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.54
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 97.5
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 97.41
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.38
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.38
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.34
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 97.27
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.22
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.22
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.21
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 97.08
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 96.67
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 96.21
d1yvra2174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 92.3
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-50  Score=437.13  Aligned_cols=242  Identities=33%  Similarity=0.588  Sum_probs=205.6

Q ss_pred             CCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCCC-CCCceEEEEEeCCEEEEEecCCC-------CCCceEeecCC
Q 001219          531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRA-------LQQPLMLIVPD  602 (1121)
Q Consensus       531 p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp~-~~rt~VGiITFDs~Vhfynl~~~-------~~~pqmlVvsD  602 (1121)
                      |+||+||||||||+.++++|+++++|++|+++|+.|++ +++++|||||||++||||+++..       ..+++|++++|
T Consensus         1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d   80 (252)
T d1pd0a3           1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD   80 (252)
T ss_dssp             CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred             CCCCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhh
Confidence            68999999999999999999999999999999999986 47899999999999999999754       24578999999


Q ss_pred             ccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecCCCCcCccccccc
Q 001219          603 VEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAR  682 (1121)
Q Consensus       603 ldd~fvPl~~~lLv~l~e~~~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~r  682 (1121)
                      |+|.|+|++++|++++.|+++.|+++|++|++++.+++.+++|+|+||++|..+|++.||||++|++|+||.|+|+|+.|
T Consensus        81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r  160 (252)
T d1pd0a3          81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR  160 (252)
T ss_dssp             TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred             hhhccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCeEEEEEEecCCccCcccccccccccceEEEEeCCCCCC--Cch
Q 001219          683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSAL--SDP  760 (1121)
Q Consensus       683 e~~~r~~~~~gt~~e~~ll~pa~~FYk~La~~~~~~gIsVDlFl~s~~~~dlatL~~La~~TGG~v~~y~~F~~~--~d~  760 (1121)
                      ++...   ...++++++++.++++||++||.+|+++||+||+|+++.+++|+++|+.|++.|||+++||++|+.+  +|.
T Consensus       161 ~~~~~---~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~  237 (252)
T d1pd0a3         161 NESGV---VNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI  237 (252)
T ss_dssp             ----------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHH
T ss_pred             ccccc---ccCcccchhcccchHHHHHHHHHHHHHCCEEEEEEeccccccCcHHHhhHhhcCCceEEEeCCCCcccHHHH
Confidence            86542   2335677889999999999999999999999999999999999999999999999999999999987  467


Q ss_pred             hHHHHHHHHhccCCc
Q 001219          761 AKLYNDLRWNITRPQ  775 (1121)
Q Consensus       761 ~~L~~dL~r~ltr~~  775 (1121)
                      .+|.+||.|+|+|++
T Consensus       238 ~k~~~dl~~~l~~~~  252 (252)
T d1pd0a3         238 VKFSTEFAKHISMDF  252 (252)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhccCCC
Confidence            799999999999864
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure