Citrus Sinensis ID: 001241

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------

MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHccccHHHHHccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHccHHHHHHccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccc

ccccccccccccccHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccHccccccEEEEEEcccccccccHccHHHHHHHHHHHHccccccHHHHHHHHccccccccccccHcccccccccccHHHHHccccHHccccccEEccccccccccccccccccccccccEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEcccEEEcccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc

maspssgrlaitpssrvlqsplsdESIWKRLKeagldevsiKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

maspssgrlaitpssrvlqsplsdesIWKRLkeagldevsikrrDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

**************************IWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELA**********************************************ECIASL*******************************************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFINQ****************IVKV**********HTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYF*

***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

*********AITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

***********************DESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSD****************************ARFSWIKRFADLVFKHS***************************KRQPVRYSFGEPKVILEVPSE********D*****NQNA*******VS**************************************************************************LHTLT***HTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVG*TNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQVLMFLHTSFLYIILAYDSCSLFLHDLLVCLYDGISYFC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1116	2.2.26 [Sep-21-2011]
Q9FLH0		1042	Putative nuclear matrix c	yes	no	0.844	0.904	0.511	0.0

>sp\|Q9FLH0\|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1	Back alignment and function desciption

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1045 (51%), Positives = 728/1045 (69%), Gaps = 103/1045 (9%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
            EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
            +SA         L    +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---------LKQKVVSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808  WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 867
            WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845  WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 868  ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 927
            E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876  EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 928  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 987
              D  +  S+EA     ++   N+PED+H L S +++  P G+                 
Sbjct: 928  --DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM----------------- 967

Query: 988  ILIVDKIIKISEVTCEMTDADNFIN 1012
             +++ + +KI+ VTCE T+  N + 
Sbjct: 968  -VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.126    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,393,993
Number of Sequences: 539616
Number of extensions: 15858933
Number of successful extensions: 143702
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 5448
Number of HSP's that attempted gapping in prelim test: 82113
Number of HSP's gapped (non-prelim): 28581
length of query: 1116
length of database: 191,569,459
effective HSP length: 128
effective length of query: 988
effective length of database: 122,498,611
effective search space: 121028627668
effective search space used: 121028627668
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1116
359497042		1117	PREDICTED: putative nuclear matrix const	0.903	0.902	0.597	0.0
255579507		1052	Filamin-A-interacting protein, putative	0.929	0.985	0.568	0.0
449451333		1025	PREDICTED: putative nuclear matrix const	0.864	0.941	0.555	0.0
356511984		1048	PREDICTED: putative nuclear matrix const	0.916	0.976	0.535	0.0
356563480		1050	PREDICTED: putative nuclear matrix const	0.918	0.976	0.523	0.0
240256486		1010	branched-chain-amino-acid aminotransfera	0.844	0.932	0.525	0.0
238481650		1042	protein little nuclei4 [Arabidopsis thal	0.844	0.904	0.511	0.0
334188655		1018	branched-chain-amino-acid aminotransfera	0.844	0.925	0.517	0.0
7486519		1421	hypothetical protein F6H11.110 - Arabido	0.836	0.657	0.514	0.0
284807022		925	nuclear matrix constituent protein 2 [Ap	0.725	0.875	0.547	0.0

>gi\|359497042\|ref\|XP_003635406.1\| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi\|296085718\|emb\|CBI29518.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1065 (59%), Positives = 794/1065 (74%), Gaps = 57/1065 (5%)

Query: 1    MASPSSGRLAI--TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            MASP   R +I  TP SRVLQSPLSD++IWKRL++AG DE SIKRRDKAALIAYIAKLE 
Sbjct: 1    MASPQPARFSIAATPGSRVLQSPLSDDAIWKRLRDAGFDEESIKRRDKAALIAYIAKLEA 60

Query: 59   EIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKK 118
            EIF+HQHHMGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE+SLKK
Sbjct: 61   EIFDHQHHMGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKREDSLKK 120

Query: 119  TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 178
             L +EKECIA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKLHAAE+
Sbjct: 121  ALEIEKECIANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKLHAAEA 180

Query: 179  LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQ 238
             QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+K +QQ
Sbjct: 181  FQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQKNVQQ 240

Query: 239  EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298
              ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+L L S
Sbjct: 241  GQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLELKLAS 300

Query: 299  LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 358
            L  REE V++REA L KKE ++L+ QE +ASKES+E+QK++A HE AL+ +++EFEAEL 
Sbjct: 301  LTTREEDVVKREALLNKKEHEILILQEKIASKESDEVQKLMALHEIALKTRKAEFEAELE 360

Query: 359  IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 418
             K KL EDEIE KRRA ELR++DL  RE+  LEREH+LEVQSRAL +KEKD+ E+ + L+
Sbjct: 361  TKRKLVEDEIEAKRRASELREVDLSNREDFALEREHELEVQSRALAEKEKDVTEKLNSLD 420

Query: 419  EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKS 478
            EKE  L A EK+ +L+K  L+KEKEE+N +K +++KSLSSL++KKKQV+ AK+K+EAMKS
Sbjct: 421  EKEKYLNAAEKDVELEKIHLEKEKEEINKMKLNIEKSLSSLEDKKKQVDHAKEKVEAMKS 480

Query: 479  EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538
            E  EL VLE+KLKEE+DV+RAQKLELM E D+L+ +KA FEAEWE IDEKREELR EAER
Sbjct: 481  ETSELLVLEMKLKEEIDVIRAQKLELMAEADELRAQKANFEAEWESIDEKREELRNEAER 540

Query: 539  VAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ 598
            +A ER+ +SK LKDERDSL+ E+DAMRDQ+K++V+SL+RERE+FM+KMVHE SEWF+KIQ
Sbjct: 541  IAEERLAISKFLKDERDSLKLEKDAMRDQYKQEVESLSREREDFMSKMVHERSEWFSKIQ 600

Query: 599  QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 658
            QERADFLL IEMQK++LENCI+ RREELES F+EREK FE+EKM+E Q ISS+KE+  KE
Sbjct: 601  QERADFLLDIEMQKKELENCIDNRREELESYFKEREKTFEQEKMKELQHISSMKERVAKE 660

Query: 659  LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEI 718
            LE V  E+KRLD ERMEIN+D +RRDREWAEL+NSIEEL +QRQKL++QR+LLHADR+EI
Sbjct: 661  LEHVASEMKRLDAERMEINLDHERRDREWAELSNSIEELKMQRQKLKKQRELLHADRKEI 720

Query: 719  QAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKF 778
              + E LKKLEDLKIA D +A++EMQ+S  E SQ+K+  KR+   Q ++ +AD  S QK 
Sbjct: 721  HTQIEHLKKLEDLKIASDNIALAEMQQSNQEPSQRKVYVKRYYKAQNTIPNADFESHQKI 780

Query: 779  DVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHE 838
            +V  NG  FN P++    S+SP +   FSW KR A+L+FK S E       EKS  S+ E
Sbjct: 781  NVVKNGSGFNLPAL--PDSSSPSTATPFSWFKRCAELIFKLSPEKPSIKHGEKSSISNSE 838

Query: 839  DASLTINSR----------------------KRQPVRYSFGEPKVILEVPSENEVVKRTV 876
            +A+LT+                          RQP RY+ GEPKVILEVPS  E VK   
Sbjct: 839  NANLTLAGNLDLSDGFDREVHDRNEKTHSISDRQPTRYALGEPKVILEVPSSGEDVKGLH 898

Query: 877  DLESENNQNAAQKCKQSVSEDGIHAARKRRV----DVDCVDPSELLMQNNKRRKQQEDFP 932
             LESE  ++ ++    S SE  + A RKRRV      D VD +    Q NK+R+QQE   
Sbjct: 899  TLESEIKKDTSENSSHSFSEKELLAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQQES-- 956

Query: 933  RNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVD 992
                  A +   V+ Q               S+  EG     S N TQGG EE ++LI D
Sbjct: 957  ------AADPCGVSIQ---------------SDAREGQDVSISLNQTQGGAEETNLLITD 995

Query: 993  KIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTN 1037
            +IIKISEVTCE      F NQ K +  QNSV E  QDI + GGTN
Sbjct: 996  EIIKISEVTCENV---VFDNQAKPNALQNSVVELGQDI-QHGGTN 1036

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255579507\|ref\|XP_002530596.1\| Filamin-A-interacting protein, putative [Ricinus communis] gi\|223529844\|gb\|EEF31776.1\| Filamin-A-interacting protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449451333\|ref\|XP_004143416.1\| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356511984\|ref\|XP_003524701.1\| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|356563480\|ref\|XP_003549990.1\| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|240256486\|ref\|NP_201378.5\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi\|334188653\|ref\|NP_001190626.1\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi\|332010720\|gb\|AED98103.1\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi\|332010722\|gb\|AED98105.1\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|238481650\|ref\|NP_001154799.1\| protein little nuclei4 [Arabidopsis thaliana] gi\|26397174\|sp\|Q9FLH0.1\|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi\|10177335\|dbj\|BAB10684.1\| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi\|332010721\|gb\|AED98104.1\| protein little nuclei4 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|334188655\|ref\|NP_001190627.1\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi\|332010724\|gb\|AED98107.1\| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7486519\|pir\|\|T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi\|2827709\|emb\|CAA16682.1\| predicted protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|284807022\|dbj\|BAI67716.1\| nuclear matrix constituent protein 2 [Apium graveolens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1116
TAIR\|locus:2169950		1042	LINC4 "LITTLE NUCLEI4" [Arabid	0.687	0.736	0.379	4.1e-120
TAIR\|locus:2019529		1132	LINC1 "AT1G67230" [Arabidopsis	0.586	0.577	0.276	3e-72
TAIR\|locus:2031875		1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.645	0.638	0.264	1.5e-70
TAIR\|locus:2012423		1085	LINC3 "LITTLE NUCLEI3" [Arabid	0.513	0.528	0.284	1.7e-58
GENEDB_PFALCIPARUM\|PF11_0486		2055	PF11_0486 "MAEBL, putative" [P	0.312	0.169	0.277	2.7e-15
UNIPROTKB\|Q8IHP3		2055	PF11_0486 "MAEBL, putative" [P	0.312	0.169	0.277	2.7e-15
ZFIN\|ZDB-GENE-050208-317		1422	tnks1bp1 "tankyrase 1 binding	0.317	0.248	0.238	9.7e-17
ZFIN\|ZDB-GENE-060503-506		1041	si:ch211-250g4.3 "si:ch211-250	0.483	0.518	0.206	7.7e-15
DICTYBASE\|DDB_G0288069		1082	DDB_G0288069 [Dictyostelium di	0.356	0.367	0.245	2.8e-14
UNIPROTKB\|G1K307		1972	MYH11 "Myosin-11" [Gallus gall	0.487	0.275	0.219	3.5e-14

TAIR\|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 301/793 (37%), Positives = 421/793 (53%)

Query:    79 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR 138
             S Y    A A+  E   K D       I+   K    ++      K    S     H + 
Sbjct:   113 SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAH-VM 171

Query:   139 AESAETKVA-ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR----YHRSAERK 193
              E A  K+A A++K   A  +   A +    AE KL   ES + +  R    +    E K
Sbjct:   172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETK 231

Query:   194 LQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNER 253
               E+V     L+ R  S + +             SL+ R+  +    + L + +  L+  
Sbjct:   232 ENEMVIERQTLNERRKSLQQE----HERLLDAQVSLNQREDHIFARSQELAELEKGLDTA 287

Query:   254 EDHILSKLQELSRKEKELEASRANVEEKFKA-LNEEKSNLDLTL-----VSLLKREEAVI 307
             +     + +    K+  LE + A   ++ +       S L L L        L  + AV 
Sbjct:   288 KTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVS 347

Query:   308 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367
             ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E E
Sbjct:   348 ERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVE 407

Query:   368 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 427
             IE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A 
Sbjct:   408 IESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVAT 467

Query:   428 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLE 487
             E++ +            +  +                 V+ A  KLEA+KSE  ELS LE
Sbjct:   468 EEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE 527

Query:   488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXX 547
             +KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID                     
Sbjct:   528 MKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFS 587

Query:   548 XXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 607
                KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLG
Sbjct:   588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLG 647

Query:   608 IEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIK 667
             IEMQKR+LE CI                          ++I S           V +E+K
Sbjct:   648 IEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELK 707

Query:   668 RLDLERMEINMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKK 727
             RLD ER+EI +DR+RR+REWAEL +S+EEL V             A+R+EI+ E E LKK
Sbjct:   708 RLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767

Query:   728 LEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDR 786
             LE+LK+A+D M++++MQ S LE S +K+SA   L Q+      +L        V+N+ D 
Sbjct:   768 LENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDG 824

Query:   787 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTI 844
             +N+ S+++    +P S   FSWIKR  +L+FK S E S  + + EE+      +   L +
Sbjct:   825 YNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKL 880

Query:   845 NSRKRQPVRYSFG 857
              S +R+   Y+ G
Sbjct:   881 ESSRREEKAYTEG 893

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0006997 "nucleus organization" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

TAIR\|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288069 DDB_G0288069 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|G1K307 MYH11 "Myosin-11" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLH0	NMCP_ARATH	No assigned EC number	0.5110	0.8440	0.9040	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00010658001	SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (1056 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1116
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-13
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-13
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-12
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-12
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-12
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-11
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-11
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-10
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-10
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-09
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	2e-08
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-08
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	1e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-07
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	5e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	6e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	1e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-06
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-06
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	7e-06
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-06
pfam05557		722	pfam05557, MAD, Mitotic checkpoint protein	9e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	1e-05
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-05
TIGR00618		1042	TIGR00618, sbcc, exonuclease SbcC	9e-05
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	1e-04
COG4717		984	COG4717, COG4717, Uncharacterized conserved protei	1e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG4942		420	COG4942, COG4942, Membrane-bound metallopeptidase	3e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
pfam05622		713	pfam05622, HOOK, HOOK protein	6e-04
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	0.001
COG1269		660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	0.002
TIGR00618		1042	TIGR00618, sbcc, exonuclease SbcC	0.002
TIGR02680		1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.003
pfam01496		707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.003

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

 Score = 75.6 bits (185), Expect = 1e-13
 Identities = 153/683 (22%), Positives = 296/683 (43%), Gaps = 49/683 (7%)

Query: 29   KRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKAS- 87
            K+ +EA  D    K+ ++      I K E     H       I  K E A K +++K + 
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI--KAEEARKADELKKAE 1287

Query: 88   ----AEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR--AES 141
                A+ A+  ++  +A      AE  K+ +  KK     K+   + +K   E +  AE+
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347

Query: 142  AETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201
            A+ +  A +  AEA      A +K  E   K   A   +AE  +    A++K +E   + 
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407

Query: 202  DDLSRRIASFK-ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSK 260
            D+L +  A+ K AD  +K+ E  ++      + +  ++  E    A+     ++     K
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE---EAKKAEEAKK 1464

Query: 261  LQELSRKEKELEA---SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 317
              E ++K  E +         +E  K   E K   D    +   +++A   ++A   KK 
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524

Query: 318  QKLLVSQETLASKESNEIQKIIANHE--SALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 375
             +   ++E   + E+ + ++     E   A  +K++E + +     K  ED+    R+A 
Sbjct: 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE 1584

Query: 376  ELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK----LIAFEKEA 431
            E +  +  + EE +   E + ++++      E+  ++   L + +E K     +  ++  
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644

Query: 432  DLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK-----KQVNCAKDKLEAMKSEAGEL-SV 485
            + KK+   K+ EE N IK+  +   +  D+KK     K     K   EA+K EA E    
Sbjct: 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704

Query: 486  LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 545
             E+K KE  +  +A++L+   E +K++ E+AK EAE +   +K EE +K+ E    E+  
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED--KKKAEEAKKDEE----EKKK 1758

Query: 546  VSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFL 605
            ++   K+E     + R       + ++D  + +R   ++K + +  + F  I +   +  
Sbjct: 1759 IAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818

Query: 606  LGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR-------------EFQQISSLK 652
            L I   K ++E+   K   + ++   E   AFE+ K               +F +   LK
Sbjct: 1819 LVINDSK-EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLK 1877

Query: 653  EKAEKELEQVTLEIKRLDLERME 675
            E  E+E+E+   EI+++D + +E
Sbjct: 1878 EDDEEEIEE-ADEIEKIDKDDIE 1899

Length = 2084

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|218636 pfam05557, MAD, Mitotic checkpoint protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|129705 TIGR00618, sbcc, exonuclease SbcC	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|129705 TIGR00618, sbcc, exonuclease SbcC	Back alignment and domain information

>gnl\|CDD\|233973 TIGR02680, TIGR02680, TIGR02680 family protein	Back alignment and domain information

>gnl\|CDD\|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1116
PRK02224		880	chromosome segregation protein; Provisional	99.48
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	99.4
PRK02224		880	chromosome segregation protein; Provisional	99.27
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.23
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.17
PRK03918		880	chromosome segregation protein; Provisional	99.01
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.93
PRK03918		880	chromosome segregation protein; Provisional	98.77
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	98.76
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	98.69
PRK01156		895	chromosome segregation protein; Provisional	98.61
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.51
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.5
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.48
PRK01156		895	chromosome segregation protein; Provisional	98.45
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	98.44
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	98.07
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	98.02
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.0
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	97.97
COG0419		908	SbcC ATPase involved in DNA repair [DNA replicatio	97.83
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.83
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	97.81
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.54
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.36
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	97.09
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.93
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	96.84
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.81
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	96.74
KOG4674		1822	consensus Uncharacterized conserved coiled-coil pr	96.72
PF00038		312	Filament: Intermediate filament protein; InterPro:	96.55
PRK11637		428	AmiB activator; Provisional	96.54
KOG0964		1200	consensus Structural maintenance of chromosome pro	96.54
PRK11637		428	AmiB activator; Provisional	96.54
PRK12704		520	phosphodiesterase; Provisional	96.53
KOG0933		1174	consensus Structural maintenance of chromosome pro	96.45
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	96.16
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.99
PRK00106		535	hypothetical protein; Provisional	95.96
KOG0018		1141	consensus Structural maintenance of chromosome pro	95.94
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.75
PHA02562		562	46 endonuclease subunit; Provisional	95.73
PRK04863		1486	mukB cell division protein MukB; Provisional	95.5
PRK12704		520	phosphodiesterase; Provisional	95.39
PRK00106		535	hypothetical protein; Provisional	95.21
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.18
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	95.17
PHA02562		562	46 endonuclease subunit; Provisional	94.94
PF12072		201	DUF3552: Domain of unknown function (DUF3552); Int	94.35
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	94.33
KOG0996		1293	consensus Structural maintenance of chromosome pro	94.04
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	94.02
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	93.0
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	92.31
PF12072		201	DUF3552: Domain of unknown function (DUF3552); Int	92.27
PF00038		312	Filament: Intermediate filament protein; InterPro:	91.64
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.61
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	91.23
PRK12705		508	hypothetical protein; Provisional	90.98
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	90.19
KOG0250		1074	consensus DNA repair protein RAD18 (SMC family pro	89.15
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	88.62
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	88.13
KOG0994		1758	consensus Extracellular matrix glycoprotein Lamini	87.97
KOG0612		1317	consensus Rho-associated, coiled-coil containing p	86.61
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.52
PRK04863		1486	mukB cell division protein MukB; Provisional	85.73
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	85.28
TIGR03185		650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.73
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.8
TIGR02680		1353	conserved hypothetical protein TIGR02680. Members	83.19
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	82.97
PRK09039		343	hypothetical protein; Validated	82.95
PF13863		126	DUF4200: Domain of unknown function (DUF4200)	81.79
PF05262		489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	81.58
KOG0977		546	consensus Nuclear envelope protein lamin, intermed	80.41

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

Probab=99.48  E-value=3e-07  Score=110.56  Aligned_cols=148  Identities=16%  Similarity=0.209  Sum_probs=61.4

Q ss_pred             HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001241          125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE  201 (1116)
Q Consensus       125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE  201 (1116)
                      +-+..++..+..+...+.+..   -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus       251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l  330 (880)
T PRK02224        251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444443321   12233333333333334433333333333333333444444444455555555554


Q ss_pred             hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001241          202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE  279 (1116)
Q Consensus       202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie  279 (1116)
                      +.++.....+..+.+.+..       .+...++.+.+.++.+.+...-+..-+..+......+..++.++++.+..++
T Consensus       331 ~~~~~~l~~~~~~~e~~~~-------~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        331 EECRVAAQAHNEEAESLRE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444443433333333222       2333333333333334333333444444444444455555555555544444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]	Back alignment and domain information

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>TIGR02680 conserved hypothetical protein TIGR02680	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF13863 DUF4200: Domain of unknown function (DUF4200)	Back alignment and domain information

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins	Back alignment and domain information

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1116
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	9e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-14
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-10
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-14
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-11
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-07
2ycu_A		995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 91.8 bits (227), Expect = 8e-19
 Identities = 106/644 (16%), Positives = 214/644 (33%), Gaps = 164/644 (25%)

Query: 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 241
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 242 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 291
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 292 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 337
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 338 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 374
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 375 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 411
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 466
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 467 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 518
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 519 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 565
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 566 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 623
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 624 EELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 683
             +   FR     F E+K+R      S    A   +      +++L   +  I  +  + 
Sbjct: 494 RMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541

Query: 684 DREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 724
           +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1116
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	98.02
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.88
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.17
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.95
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.09
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	93.58
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.18
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.48
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	89.74
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	89.55
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	85.45
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	81.28

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

Probab=98.02  E-value=9.9e-06  Score=99.82  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001241          681 QRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESE  723 (1116)
Q Consensus       681 e~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vE  723 (1116)
                      ..++.+..++...+++......++..++..+..+...+...++
T Consensus      1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S         1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444333344444444444444444444333

PyMOL of 1i84

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00