Citrus Sinensis ID: 001256
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1113 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IYB7 | 885 | DIS3-like exonuclease 2 O | yes | no | 0.659 | 0.829 | 0.351 | 1e-128 | |
| Q8CI75 | 870 | DIS3-like exonuclease 2 O | yes | no | 0.691 | 0.885 | 0.335 | 1e-128 | |
| Q0V9R3 | 834 | DIS3-like exonuclease 2 O | yes | no | 0.644 | 0.859 | 0.340 | 1e-122 | |
| O14040 | 927 | Dis3-like exonuclease C2C | yes | no | 0.470 | 0.565 | 0.399 | 1e-100 | |
| Q09568 | 848 | Uncharacterized ribonucle | yes | no | 0.484 | 0.635 | 0.323 | 3e-83 | |
| A0JN80 | 1053 | DIS3-like exonuclease 1 O | no | no | 0.513 | 0.542 | 0.315 | 3e-79 | |
| Q9CSH3 | 958 | Exosome complex exonuclea | no | no | 0.411 | 0.478 | 0.361 | 1e-78 | |
| Q9Y2L1 | 958 | Exosome complex exonuclea | no | no | 0.480 | 0.558 | 0.326 | 6e-78 | |
| Q8TF46 | 1054 | DIS3-like exonuclease 1 O | no | no | 0.513 | 0.541 | 0.312 | 6e-76 | |
| Q5R5N8 | 1054 | DIS3-like exonuclease 1 O | no | no | 0.513 | 0.541 | 0.312 | 2e-75 |
| >sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4 | Back alignment and function desciption |
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Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust.
Identities = 296/841 (35%), Positives = 424/841 (50%), Gaps = 107/841 (12%)
Query: 159 IFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEG 218
IF + S E V+E L++G + + R+N EA+ D+ I G+ A+NRA+ G
Sbjct: 49 IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDGDRDIFIDGVVARNRALNG 108
Query: 219 DFVLIKVDRLSLWAKMKGFSNN--SSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNC 276
D V++K+ W +K SN+ + +S++P E G H KS D +
Sbjct: 109 DLVVVKLLPEEHWKVVKPESNDKETEAAYESDIPEELCGHHLPQQSLKSYND------SP 162
Query: 277 TLLSEKGIHHDDDSSSEAYNQEMIEREGYNYI----------NGHHPSTSDSTEKVSSSQ 326
++ E D Q ++ +G + +G P T D T +S
Sbjct: 163 DVIVEAQFDGSDSEDGHGITQNVL-VDGVKKLSVCVSEKGREDGDAPVTKDETTCISQDT 221
Query: 327 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDA 386
+ +++R + +VV I+E+ R GFL + A
Sbjct: 222 RALSEKSLQR-------------SAKVVYILEKKHSR-AATGFLKLL------------A 255
Query: 387 KKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDE 446
KN R+Y +P+ + P++ V +KD P R ++ T L RI +
Sbjct: 256 DKNSELF----RKYALFSPSDHRVPRIYVPLKDCPQDFVARPKDYANT----LFICRIVD 307
Query: 447 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLP-CVPWEVPQEE 505
W E+ F + G+ GE+EP+ IL E + S FS E L CLP +PW +P EE
Sbjct: 308 WKEDCNFALGQLAKSLGQAGEIEPETEGILTEYGVDFSDFSSEVLECLPQGLPWTIPPEE 367
Query: 506 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
R+DLR CIFTIDPSTA DLDDALS + L+DG +VGVHIADVSYFV G+ LD A
Sbjct: 368 FSKRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVA 427
Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
R+TSVY++Q+ +PMLP LL EE+ SLNP D+L FS+ W L G ++D W GRT+IR
Sbjct: 428 AERATSVYLVQKVVPMLPRLLCEELCSLNPMSDKLTFSVIWTLTPEGKILDEWFGRTIIR 487
Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
SC KLSYEHAQ +I+ + + L P + + +V +++ +L+ ++K L+ +R
Sbjct: 488 SCTKLSYEHAQSMIESPTEKIPAKEL----PPISPEHSSEEVHQAVLNLHGIAKQLRQQR 543
Query: 686 FTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPD 744
F DGALRL+ K F D E G P + + N L EEFMLLAN A I RAFP+
Sbjct: 544 FVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRESNKLVEEFMLLANMAVAHKIHRAFPE 603
Query: 745 SALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILIN 804
ALLRRHP P R L + FC + GL +D SS+G ++SL Q K ++L N
Sbjct: 604 QALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTN 663
Query: 805 YATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
+RPMQ+A YFCSG +D + HYAL P+YTHFTSP+RR+ D++VHR L AAL
Sbjct: 664 MCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVHRLLAAAL---- 719
Query: 865 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 924
G R R D A D L
Sbjct: 720 ----------------GYRERL--------DMA--------------------PDTLQKQ 735
Query: 925 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 984
A HCNDR++A + V++ L+ +L+K+ L SEA V+ + + + + + +++RI
Sbjct: 736 ADHCNDRRMASKRVQELSTSLFFAVLVKESGPLESEAMVMGILKQAFDVLVLRYGVQKRI 795
Query: 985 Y 985
Y
Sbjct: 796 Y 796
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Ribonuclease that plays a critical role in RNA metabolism. It is essential for correct mitosis, and negatively regulates cell proliferation. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: - |
| >sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1 | Back alignment and function description |
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| >sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans GN=F48E8.6 PE=3 SV=2 | Back alignment and function description |
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| >sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4 | Back alignment and function description |
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| >sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2 | Back alignment and function description |
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| >sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1113 | ||||||
| 255545438 | 1099 | RNA binding protein, putative [Ricinus c | 0.969 | 0.981 | 0.629 | 0.0 | |
| 359492408 | 1131 | PREDICTED: DIS3-like exonuclease 2-like | 0.955 | 0.940 | 0.610 | 0.0 | |
| 356551558 | 1133 | PREDICTED: DIS3-like exonuclease 2-like | 0.952 | 0.935 | 0.595 | 0.0 | |
| 356550838 | 1184 | PREDICTED: DIS3-like exonuclease 2-like | 0.936 | 0.880 | 0.583 | 0.0 | |
| 224082254 | 944 | predicted protein [Populus trichocarpa] | 0.840 | 0.991 | 0.650 | 0.0 | |
| 449446430 | 1125 | PREDICTED: DIS3-like exonuclease 2-like | 0.957 | 0.947 | 0.570 | 0.0 | |
| 302141847 | 1007 | unnamed protein product [Vitis vinifera] | 0.858 | 0.948 | 0.572 | 0.0 | |
| 449499475 | 1159 | PREDICTED: LOW QUALITY PROTEIN: DIS3-lik | 0.950 | 0.912 | 0.569 | 0.0 | |
| 224066863 | 860 | predicted protein [Populus trichocarpa] | 0.767 | 0.993 | 0.645 | 0.0 | |
| 357488975 | 1162 | DIS3-like exonuclease [Medicago truncatu | 0.954 | 0.913 | 0.529 | 0.0 |
| >gi|255545438|ref|XP_002513779.1| RNA binding protein, putative [Ricinus communis] gi|223546865|gb|EEF48362.1| RNA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1357 bits (3513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1130 (62%), Positives = 852/1130 (75%), Gaps = 51/1130 (4%)
Query: 1 MRGGSAVEQSQPMVVDEVVD------KEKKKKNRRSNRRSNKNSSVNEIRGEATQTKNGY 54
MR G+ EQS +V++ D KEKKK RRSNRRS +NS N + G +++
Sbjct: 2 MRSGT--EQSSTVVIERTEDGVADKDKEKKKNKRRSNRRSKQNSP-NLVNGGGELSQSSR 58
Query: 55 KTKNLTSSMNCSSTKQQDLDLHPLSEQDPTGASTVTFSSMPTMHINEEESAESGSTQSQL 114
K+KN TSS+ C + Q D D + F+SMPTMHI+E Q +
Sbjct: 59 KSKNYTSSVGCFPSGQPDFDAY-------------AFNSMPTMHISE---------QVEH 96
Query: 115 LLATDLC--GSIISRSCPEPIANDSSCWAYTNKDDNPSHQSEARCKIFAPHWSMEAVNEA 172
LL +DL G S SCPEPIA C + + N R KIFA HWS+EA++EA
Sbjct: 97 LLPSDLSIGGQAFSNSCPEPIAG-GLCPFDSISNIN------TRGKIFASHWSIEAIDEA 149
Query: 173 LEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWA 232
LEKGDAFKA++ VNAHNRLEAYCKIEGV TDVLI+G+A QNRAVEGD V+IKVD L W
Sbjct: 150 LEKGDAFKAVFHVNAHNRLEAYCKIEGVSTDVLISGLAVQNRAVEGDMVVIKVDPLPCWT 209
Query: 233 KMKGF---SNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEY--SNCTLLSEKGIHHD 287
KMKG SN+ ++ ED N E + M S CKGK KV+V +++ S L +KGIH +
Sbjct: 210 KMKGSNGPSNSIALAEDCNSAVELSEMASGSCKGKIKVEVDHDFAESGSFSLPQKGIHSE 269
Query: 288 DDS-SSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQQNDGMNAIERLSAMISSYPT 346
D S ++EA +QE+ GYN G HPS S+S+ SS Q++G NA+ RL MISS+PT
Sbjct: 270 DSSCATEAVHQELNGSTGYNIGIGDHPSASESSNFGSSMGQHEGANAVGRLCTMISSHPT 329
Query: 347 KRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPT 406
KRPTGRVV+IIERSPRRD I+GFLNV QWF + +KD+KKN++S S+ DREYIQL PT
Sbjct: 330 KRPTGRVVAIIERSPRRDAIIGFLNVKQWFYCREACKKDSKKNKNSSSISDREYIQLMPT 389
Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 466
PK+PKM+VL LPDSIKKRLE GDAT+EMELVAA+ID W++ESP P AHV +FGRG
Sbjct: 390 DPKFPKMMVLASSLPDSIKKRLEGGDATVEMELVAAQIDNWDDESPSPHAHVSRIFGRGS 449
Query: 467 EVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTAT 526
E+EPQ++AILYEN IC S FSPESLSC+PC WEVP EE+ RKDLRN CIFTIDPSTAT
Sbjct: 450 ELEPQLSAILYENTICYSDFSPESLSCIPCDSWEVPAEEIRRRKDLRNLCIFTIDPSTAT 509
Query: 527 DLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLL 586
DLDDALS+ERL +GI RVGVHIADVSYFVLP +ALD EAQ RSTSVY+L+ K+PMLP LL
Sbjct: 510 DLDDALSVERLPNGILRVGVHIADVSYFVLPDSALDKEAQARSTSVYLLRGKLPMLPPLL 569
Query: 587 SEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVE 646
SE +GSLNPGVDRLAF+IFW+LNS GDV DRWIGRTVI+SCCKLSY+HAQ+++DG E
Sbjct: 570 SENLGSLNPGVDRLAFTIFWELNSTGDVTDRWIGRTVIQSCCKLSYQHAQEMVDGVIREE 629
Query: 647 SSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG 706
+ NT G PQLYG F+WSDV+RS+KSL E+SK L++KRF DGAL+LE+SK FLFDEYG
Sbjct: 630 ACNTFGNSLPQLYGPFDWSDVIRSVKSLNEISKTLREKRFNDGALQLESSKIGFLFDEYG 689
Query: 707 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 766
PYDSVL GR+D +FL EEFMLLAN+TAAEVI+RAFPDSALLRRHPAPNMRKLREFEAFC
Sbjct: 690 IPYDSVLCGRKDSDFLVEEFMLLANRTAAEVISRAFPDSALLRRHPAPNMRKLREFEAFC 749
Query: 767 SKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDD-T 825
KHGLQLD+SSSG FHQSLE R KLKDD VL IL++YA+RPMQLA+YFCSG KD+
Sbjct: 750 CKHGLQLDSSSSGNFHQSLECIRGKLKDDSVLCGILMSYASRPMQLATYFCSGVMKDNMN 809
Query: 826 DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGR 885
DWGHYALA +YTHFTSPLRRYPD++VHRTL AA+EAE+LY + RR+ K + V R
Sbjct: 810 DWGHYALAVALYTHFTSPLRRYPDIIVHRTLAAAIEAEELYMRSRRISCKAGMGDKVM-R 868
Query: 886 FLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKL 945
TGI++DKDAAES+EG+EALS AA K+ +PC + L NV +CNDRKLA R+VKDAC KL
Sbjct: 869 CFTGIYFDKDAAESVEGKEALSAAASKHRIPCTESLANVVAYCNDRKLASRHVKDACDKL 928
Query: 946 YMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVEGLIVEWLETTSTLVL 1005
YMW LLK+KEVLLS+ARVL LGPRFM+IYI+KLAIERRIYY+EVEGL VEWLE TSTLVL
Sbjct: 929 YMWALLKRKEVLLSDARVLGLGPRFMSIYIQKLAIERRIYYEEVEGLTVEWLEATSTLVL 988
Query: 1006 SLCAHKRSFKRGGPGNYRALEEVALVVRPNDLKEEHGMFGGSVNKCFTTDANAKRQCS-- 1063
+LC++KR+F+R G G YR L+E A VV P LK E M G S +C D++ + S
Sbjct: 989 NLCSYKRAFRRSGSGFYRELDEFAWVVSPCSLKLEADMVGESPKECRIADSDNNGKASQH 1048
Query: 1064 -GSSSNSGVDPGVFPLTIPLLSTIPVALNAIGGGDGPLEIGVRLYMSSYM 1112
S S +DP VFP+T+ LLSTIPVAL+A+GG D P+EIGVR++ SSY+
Sbjct: 1049 IDPISESKIDPVVFPITVRLLSTIPVALHAVGGDDRPIEIGVRVFASSYL 1098
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492408|ref|XP_002284419.2| PREDICTED: DIS3-like exonuclease 2-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356551558|ref|XP_003544141.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356550838|ref|XP_003543790.1| PREDICTED: DIS3-like exonuclease 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224082254|ref|XP_002306619.1| predicted protein [Populus trichocarpa] gi|222856068|gb|EEE93615.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449446430|ref|XP_004140974.1| PREDICTED: DIS3-like exonuclease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|302141847|emb|CBI19050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449499475|ref|XP_004160827.1| PREDICTED: LOW QUALITY PROTEIN: DIS3-like exonuclease 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224066863|ref|XP_002302251.1| predicted protein [Populus trichocarpa] gi|222843977|gb|EEE81524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|357488975|ref|XP_003614775.1| DIS3-like exonuclease [Medicago truncatula] gi|355516110|gb|AES97733.1| DIS3-like exonuclease [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1113 | ||||||
| TAIR|locus:2203231 | 1055 | AT1G77680 [Arabidopsis thalian | 0.620 | 0.654 | 0.621 | 8.5e-274 | |
| MGI|MGI:2442555 | 870 | Dis3l2 "DIS3 mitotic control h | 0.408 | 0.522 | 0.445 | 8.6e-127 | |
| UNIPROTKB|Q8IYB7 | 885 | DIS3L2 "DIS3-like exonuclease | 0.408 | 0.514 | 0.458 | 2.2e-123 | |
| ZFIN|ZDB-GENE-070705-171 | 995 | si:ch211-273k1.4 "si:ch211-273 | 0.408 | 0.457 | 0.447 | 1.7e-122 | |
| UNIPROTKB|E1C372 | 875 | DIS3L2 "Uncharacterized protei | 0.403 | 0.513 | 0.468 | 8.2e-122 | |
| RGD|1560168 | 884 | Dis3l2 "DIS3 mitotic control h | 0.408 | 0.514 | 0.447 | 1.5e-112 | |
| UNIPROTKB|E1B7R0 | 882 | DIS3L2 "Uncharacterized protei | 0.455 | 0.574 | 0.437 | 2.3e-112 | |
| UNIPROTKB|E2QZ40 | 870 | DIS3L2 "Uncharacterized protei | 0.491 | 0.628 | 0.410 | 1e-111 | |
| UNIPROTKB|F6XKS7 | 879 | DIS3L2 "Uncharacterized protei | 0.491 | 0.622 | 0.410 | 1e-111 | |
| DICTYBASE|DDB_G0278757 | 1343 | DDB_G0278757 "DIS3-like exonuc | 0.422 | 0.349 | 0.406 | 7.8e-108 |
| TAIR|locus:2203231 AT1G77680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2261 (801.0 bits), Expect = 8.5e-274, Sum P(2) = 8.5e-274
Identities = 441/710 (62%), Positives = 539/710 (75%)
Query: 326 QQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKD 385
+Q +A+++L ++SS+P KRPTG+VV+++E+S RD IVG L+V W +YK D
Sbjct: 296 EQKGNCSAVDKLCGILSSFPHKRPTGQVVAVVEKSLVRDSIVGLLDVKGWIHYK---ESD 352
Query: 386 AKKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARID 445
K+ +S LS+ D EY+QL P P++PK++V LP SI+ RLE D +E ELVAA+I
Sbjct: 353 PKRCKSPLSLSDDEYVQLMPADPRFPKLIVPFHVLPGSIRARLENLDPNLEAELVAAQIV 412
Query: 446 EWNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEE 505
+W E SPFP A + H+FGRG E+EPQINAILY+N++C S FSP SL+ LP VPWEVP+EE
Sbjct: 413 DWGEGSPFPVAQITHLFGRGSELEPQINAILYQNSVCDSDFSPGSLTSLPRVPWEVPEEE 472
Query: 506 LLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEA 565
+ RKDLR+ C+ TIDPSTATDLDDALS++ L G RVGVHIADVSYFVLP TALD EA
Sbjct: 473 VQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALDTEA 532
Query: 566 QVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIR 625
+ RSTSVY++QRKI MLP LLSE VGSL+PG DRLAFSI WDLN GDV+DRWIGRT+IR
Sbjct: 533 RFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRTIIR 592
Query: 626 SCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKR 685
SCCKLSY+HAQDIIDGK DV + GWP L+G F+W DV RS+K L E+S L+ KR
Sbjct: 593 SCCKLSYDHAQDIIDGKSDVAEN-----GWPALHGSFKWCDVTRSVKQLSEISTTLRQKR 647
Query: 686 FTDGALRLENSKPVFLFDEYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDS 745
F +GAL+LENSKPVFLFDE+G PYD V R+ NFL EEFMLLAN TAAEVI++A+ S
Sbjct: 648 FRNGALQLENSKPVFLFDEHGVPYDFVTCSRKGSNFLVEEFMLLANMTAAEVISQAYRAS 707
Query: 746 ALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINY 805
+LLRRHP PN RKL+EFE FCSKHG+ LD SSSGQ SLE+ LKDD V DIL NY
Sbjct: 708 SLLRRHPEPNTRKLKEFEGFCSKHGMDLDISSSGQLQDSLEKITGNLKDDSVFVDILNNY 767
Query: 806 ATRPMQLASYFCSGDFKDDT-DWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEK 864
A +PMQLASYFC+G+ KD +WGHYALA P+YTHFTSPLRRYPD+VVHR L AALEAE+
Sbjct: 768 AIKPMQLASYFCTGNLKDSVAEWGHYALAVPLYTHFTSPLRRYPDIVVHRALAAALEAEE 827
Query: 865 LYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNV 924
LY K ++ EG R F TGI ++KDAAES+EG+EALSVAALK+GVP +IL +V
Sbjct: 828 LYSKQKQTAID----EG-RSCF-TGIHFNKDAAESIEGKEALSVAALKHGVPSTEILSDV 881
Query: 925 ATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRI 984
A +CN+RKLA R V+DAC KLY W +LK+KE+ EARV+ LG RFMT+YI KL IERRI
Sbjct: 882 AAYCNERKLAARKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERRI 941
Query: 985 YYDEVEGLIVEWLETTSTLVLSLCAHKRSFKRGGPGNYRALEEVALVVRP 1034
YYD++EGL +WLE TSTL++ K KRGG G ++ ++E +V P
Sbjct: 942 YYDQIEGLCADWLEATSTLIVD----KLYSKRGGRGFFKPMKEAVYLVSP 987
|
|
| MGI|MGI:2442555 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8IYB7 DIS3L2 "DIS3-like exonuclease 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070705-171 si:ch211-273k1.4 "si:ch211-273k1.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C372 DIS3L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| RGD|1560168 Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1B7R0 DIS3L2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2QZ40 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6XKS7 DIS3L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0278757 DDB_G0278757 "DIS3-like exonuclease 2" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.13.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
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 |
 | gw1.V.5193.1 | hypothetical protein (944 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1113 | |||
| COG0557 | 706 | COG0557, VacB, Exoribonuclease R [Transcription] | 1e-116 | |
| pfam00773 | 322 | pfam00773, RNB, RNB domain | 1e-110 | |
| TIGR02063 | 709 | TIGR02063, RNase_R, ribonuclease R | 2e-98 | |
| smart00955 | 286 | smart00955, RNB, This domain is the catalytic doma | 3e-93 | |
| TIGR00358 | 654 | TIGR00358, 3_prime_RNase, VacB and RNase II family | 2e-69 | |
| PRK11642 | 813 | PRK11642, PRK11642, exoribonuclease R; Provisional | 1e-44 | |
| TIGR02062 | 639 | TIGR02062, RNase_B, exoribonuclease II | 1e-26 | |
| COG4776 | 645 | COG4776, Rnb, Exoribonuclease II [Transcription] | 3e-25 | |
| PRK05054 | 644 | PRK05054, PRK05054, exoribonuclease II; Provisiona | 5e-25 |
| >gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
Score = 375 bits (964), Expect = e-116
Identities = 188/516 (36%), Positives = 253/516 (49%), Gaps = 67/516 (12%)
Query: 347 KRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVPDREYIQLTPT 406
+ VV I+ER +VG L +Q +PD + +
Sbjct: 123 RFKEAAVVRILER--ANSALVGELRPSQGIGRV---------------LPDDKRLP---- 161
Query: 407 HPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGG 466
+ + + P EEG LV I W + S P V+ V G G
Sbjct: 162 ----FLIAIPPEQAPG-----AEEGH------LVVVEITRWPDTSRPPFGEVVEVLGDLG 206
Query: 467 EVEPQINAILYENAICCSGFSPESLSCLPCVPWEVPQEELLSRKDLRNFCIFTIDPSTAT 526
+ I AIL ++ I S F + L +P EVP+E+L R DLR+ IFTIDP A
Sbjct: 207 DPGADIEAILRDHGI-PSEFPEKVLDEAAALPDEVPEEDLKGRVDLRDLPIFTIDPEDAK 265
Query: 527 DLDDALSIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLL 586
DLDDA+S+E+L +G R+GVHIADVS++V PG+ALD EA+ R TSVY+ R IPMLP L
Sbjct: 266 DLDDAVSVEKLRNGGYRLGVHIADVSHYVQPGSALDKEARKRGTSVYLPDRVIPMLPEAL 325
Query: 587 SEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVE 646
S + SLNPGVDRLA S L+S G V I +VI+S +L+YE Q I+DGK D +
Sbjct: 326 SNGLCSLNPGVDRLALSCEMTLDSEGRVKKYEIYPSVIKSAARLTYEEVQAILDGKEDDK 385
Query: 647 SSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG 706
+ ++ S+ L E++KILK KR + GA+ + + + DE G
Sbjct: 386 Y-----------------APLLDSLLELLELAKILKKKRLSRGAIDFDTPEAKIVLDEEG 428
Query: 707 TPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC 766
P + + R D L EEFMLLAN+T AE + + L R H P+ KL+ F
Sbjct: 429 RPVEIEIRERLDAEKLIEEFMLLANETVAEHLEKHKIP-LLYRTHERPSTEKLQSLREFL 487
Query: 767 SKHGLQLDTSSSGQFHQSLEQAREKLKD--DYVLFDILINYATRPMQLASYFCSGDFKDD 824
GL L S Q + E +K + L+ R M+ A Y
Sbjct: 488 QNLGLVLPLGGSKPQPQDYQILLETVKGRPLEAVLQTLLL---RSMKQAEY-------SP 537
Query: 825 TDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAAL 860
+ GH+ LA YTHFTSP+RRYPDL+VHR L A L
Sbjct: 538 DNVGHFGLALDYYTHFTSPIRRYPDLIVHRQLKALL 573
|
Length = 706 |
| >gnl|CDD|216112 pfam00773, RNB, RNB domain | Back alignment and domain information |
|---|
| >gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R | Back alignment and domain information |
|---|
| >gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of ribonuclease II | Back alignment and domain information |
|---|
| >gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
| >gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|131117 TIGR02062, RNase_B, exoribonuclease II | Back alignment and domain information |
|---|
| >gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1113 | |||
| KOG2102 | 941 | consensus Exosomal 3'-5' exoribonuclease complex, | 100.0 | |
| TIGR00358 | 654 | 3_prime_RNase VacB and RNase II family 3'-5' exori | 100.0 | |
| PRK11642 | 813 | exoribonuclease R; Provisional | 100.0 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 100.0 | |
| PRK05054 | 644 | exoribonuclease II; Provisional | 100.0 | |
| COG0557 | 706 | VacB Exoribonuclease R [Transcription] | 100.0 | |
| TIGR02062 | 639 | RNase_B exoribonuclease II. This family consists o | 100.0 | |
| PF00773 | 325 | RNB: RNB domain CAUTION: The Prosite pattern does | 100.0 | |
| COG4776 | 645 | Rnb Exoribonuclease II [Transcription] | 100.0 | |
| cd04471 | 83 | S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domai | 98.12 | |
| PF08206 | 58 | OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 | 97.67 | |
| cd04460 | 99 | S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. | 96.87 | |
| TIGR00448 | 179 | rpoE DNA-directed RNA polymerase (rpoE), archaeal | 96.73 | |
| cd05686 | 73 | S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding dom | 96.39 | |
| cd05684 | 79 | S1_DHX8_helicase S1_DHX8_helicase: The N-terminal | 95.66 | |
| PRK08563 | 187 | DNA-directed RNA polymerase subunit E'; Provisiona | 94.93 | |
| PRK08582 | 139 | hypothetical protein; Provisional | 94.9 | |
| COG1095 | 183 | RPB7 DNA-directed RNA polymerase, subunit E' [Tran | 94.87 | |
| cd05706 | 73 | S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a | 94.79 | |
| cd05697 | 69 | S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a t | 94.65 | |
| cd05689 | 72 | S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal p | 94.63 | |
| cd05708 | 77 | S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a | 94.6 | |
| cd04452 | 76 | S1_IF2_alpha S1_IF2_alpha: The alpha subunit of tr | 94.56 | |
| PF00575 | 74 | S1: S1 RNA binding domain; InterPro: IPR003029 Rib | 94.43 | |
| cd05690 | 69 | S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal p | 94.37 | |
| cd05707 | 68 | S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a | 93.66 | |
| PLN00207 | 891 | polyribonucleotide nucleotidyltransferase; Provisi | 93.66 | |
| cd05685 | 68 | S1_Tex S1_Tex: The C-terminal S1 domain of a trans | 93.56 | |
| cd05696 | 71 | S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a t | 93.29 | |
| PRK07252 | 120 | hypothetical protein; Provisional | 93.1 | |
| cd05698 | 70 | S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp | 92.77 | |
| PRK05807 | 136 | hypothetical protein; Provisional | 92.76 | |
| cd04461 | 83 | S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp | 92.72 | |
| cd04472 | 68 | S1_PNPase S1_PNPase: Polynucleotide phosphorylase | 91.88 | |
| cd05705 | 74 | S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a | 91.39 | |
| cd05688 | 68 | S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal p | 90.86 | |
| PF08206 | 58 | OB_RNB: Ribonuclease B OB domain; InterPro: IPR013 | 90.82 | |
| cd05692 | 69 | S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal p | 90.63 | |
| smart00316 | 72 | S1 Ribosomal protein S1-like RNA-binding domain. | 90.51 | |
| cd05691 | 73 | S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal p | 89.55 | |
| cd04473 | 77 | S1_RecJ_like S1_RecJ_like: The S1 domain of the ar | 89.44 | |
| PRK03987 | 262 | translation initiation factor IF-2 subunit alpha; | 89.4 | |
| PTZ00248 | 319 | eukaryotic translation initiation factor 2 subunit | 89.11 | |
| cd05703 | 73 | S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: R | 88.96 | |
| PRK08059 | 123 | general stress protein 13; Validated | 87.92 | |
| PRK11824 | 693 | polynucleotide phosphorylase/polyadenylase; Provis | 87.29 | |
| PTZ00162 | 176 | DNA-directed RNA polymerase II subunit 7; Provisio | 87.2 | |
| TIGR03591 | 684 | polynuc_phos polyribonucleotide nucleotidyltransfe | 85.7 | |
| cd05702 | 70 | S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: R | 85.57 | |
| cd05695 | 66 | S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a t | 84.98 | |
| PHA02945 | 88 | interferon resistance protein; Provisional | 84.87 | |
| cd05704 | 72 | S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a | 84.05 | |
| PRK07899 | 486 | rpsA 30S ribosomal protein S1; Reviewed | 83.36 | |
| cd00164 | 65 | S1_like S1_like: Ribosomal protein S1-like RNA-bin | 83.14 | |
| TIGR02063 | 709 | RNase_R ribonuclease R. This family consists of an | 82.79 | |
| PRK12269 | 863 | bifunctional cytidylate kinase/ribosomal protein S | 82.72 | |
| smart00357 | 64 | CSP Cold shock protein domain. RNA-binding domain | 82.59 | |
| cd04453 | 88 | S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-lik | 82.35 | |
| cd04462 | 88 | S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA poly | 82.33 | |
| PRK07400 | 318 | 30S ribosomal protein S1; Reviewed | 81.56 |
| >KOG2102 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-124 Score=1163.78 Aligned_cols=659 Identities=40% Similarity=0.647 Sum_probs=567.6
Q ss_pred ccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCcCCccccCCCCEEEEEEccchhhhhccC
Q 001256 157 CKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKMKG 236 (1113)
Q Consensus 157 k~~F~~hl~~~~v~~gLk~G~l~~G~lrVn~~N~~eAyV~~~g~~~Dv~I~G~~~rNRAl~GDvVaVeLlp~~~W~~~~~ 236 (1113)
|.+|++|||++.+..||++|++++|+||||++|+.||||.++++..+|+|+|.++||||++||+|||||+|..+|.....
T Consensus 219 k~~~~~~l~~~~~~~~~~~g~~~~g~l~i~~~n~~e~~v~~~~~~~~v~i~G~~~~NRa~~gdvVavell~~~~~~~~~~ 298 (941)
T KOG2102|consen 219 KLLFSPYLPMAKIKAGIKSGRLVQGTLRISRKNLSEAFVRVQGLDHPVLICGSKDRNRALDGDVVAVELLPVDEWRVELS 298 (941)
T ss_pred ceeeccccchhhHhhhhcccceeeceEEecccccccceeeccccCCceEEeCchhhhhhhcCCeEEEEeccchhccccch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999952111
Q ss_pred CCCCCcccccCCCcccccCCCccccccCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCCCC
Q 001256 237 FSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTS 316 (1113)
Q Consensus 237 ~~~~~~~~e~~~~~~e~~e~~~~~~~~k~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1113)
. ... + . ....+. .+.. -+++
T Consensus 299 ~---------~~~--~-~----------~~~~~~----------~~~~-~~~~--------------------------- 318 (941)
T KOG2102|consen 299 S---------IFL--D-S----------VKVSSN----------IKES-DDED--------------------------- 318 (941)
T ss_pred h---------hhc--c-c----------cccccc----------cccc-cccc---------------------------
Confidence 0 000 0 0 000000 0000 0000
Q ss_pred CccccccccccccchhhHhhhheeeccCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCCCC
Q 001256 317 DSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLSVP 396 (1113)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1113)
.++.. . ......+.... .-.|+|+||+|++|+|++ ++|.+....+. +.+. .
T Consensus 319 -------e~~~~---~-~~~~~~~~~~~-~~~~~~~VV~il~r~~~~--~~~~l~~~~~~---------~~~~------~ 369 (941)
T KOG2102|consen 319 -------EDGTL---N-LRGKAVLSDPL-PVQPTGKVVAILRRNWRQ--YVGGLLPLSEQ---------ALKG------S 369 (941)
T ss_pred -------ccccc---c-ccccccccccc-cccccceEEEEEecCcee--eeccccCcccc---------cccc------c
Confidence 00000 0 00000000000 124699999999999964 56655521110 0001 1
Q ss_pred CCceEEEEeCCCCCCceEEecC-CCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEEcCCCCChHHHHHHH
Q 001256 397 DREYIQLTPTHPKYPKMVVLVK-DLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINAI 475 (1113)
Q Consensus 397 ~~~~~~~~P~D~riP~i~i~~~-~~p~~~~~~~~~gd~~~~~~lvvv~I~~Wp~~s~~P~G~Iv~~LG~~gd~~~e~~aI 475 (1113)
...++||+|.|+|+|+|.|+++ +.. .+.+.+++|.|++||.++.||.|++++.||.+|+.++++++|
T Consensus 370 ~~~~~~~~p~DkRvP~i~i~t~~~~~------------~~~~~~~~~~I~~W~~ts~~p~g~~v~~lG~i~~~~~e~~aL 437 (941)
T KOG2102|consen 370 SALIVLFIPSDKRVPLIRILTDDQAQ------------DLIDKRIVAAIDRWPRTSLYPFGHLVRELGTIGDTETETEAL 437 (941)
T ss_pred ccceeeeccccCCCCeeecccccccc------------chhceeEEEEecccccCCcccCceehhhccCcCCccchhhhh
Confidence 2468999999999999999987 432 234568999999999999999999999999999999999999
Q ss_pred HHhcCcCCCCCChhhhccCCC-CCCCCChhhhcc-CccCCCceEEEEcCCCCCCCCceEEEEEcCCCeEEEEEEeccccc
Q 001256 476 LYENAICCSGFSPESLSCLPC-VPWEVPQEELLS-RKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSY 553 (1113)
Q Consensus 476 L~e~~i~~~~Fs~~vl~~l~~-~~~~i~~~e~~~-R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS~ 553 (1113)
|.+|+++..+|+++++.|+|. .+|.+++++... |+|||++.||+|||++|+|||||||++.++||+|+||||||||||
T Consensus 438 L~en~v~~~~f~~~~~~~lp~~~~~~~~~~~~~~~R~Dlr~~~i~~IDp~~~~dlDdAL~~~~l~nG~~evGVHIADVt~ 517 (941)
T KOG2102|consen 438 LLENGVPHKPFSQALLDCLPRSHPWPITEEELQKLRKDLRDLLIFSIDPPGATDLDDALHVRNLPNGNLEVGVHIADVTH 517 (941)
T ss_pred hhcCCCcccccCHHHHhcCCccCCCCcChHHhhhhhhhhhhceEEeecCCCccchhhhhheeecCCCcEEEEEEeccchh
Confidence 999999889999999999999 999999999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEEEEEEEEEEecccccCHH
Q 001256 554 FVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYE 633 (1113)
Q Consensus 554 fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d~~f~~SvIrS~~rLTYe 633 (1113)
||+|||+||+||++|||||||++++|||||+.||+++|||+||+||+||||.|+|+.+|.|++.||++|+|+|+++|+|+
T Consensus 518 fV~pgs~lD~eA~~R~ttvyL~q~~i~MLP~~L~~~lcSL~~g~dr~aFSvvwel~~~~~i~~~~f~ksvI~s~~~lsye 597 (941)
T KOG2102|consen 518 FVKPGSALDREAARRGTTVYLVQKRIPMLPKLLSEELCSLRPGVDRLAFSVVWELDSDGSILKTWFGKSVIRSKAALSYE 597 (941)
T ss_pred hcCCCCccCHHHHhhcceEEeccccccCCchhhhhhheeccCCCceeeEEEEEEEcCCCceeeceecchhcccchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeecCCCC-CeEEeE
Q 001256 634 HAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFDEYG-TPYDSV 712 (1113)
Q Consensus 634 ~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~lDe~g-~p~~v~ 712 (1113)
+||++|+++.. ..++...|+.|++||+.||++|+.+||+.+..+|+.|.+|+.+ .|.++.
T Consensus 598 ~Aq~~id~~~~-------------------~~~v~~~l~~l~~ia~~lr~~R~~~gal~l~~~e~~~~~d~~~~~p~~~e 658 (941)
T KOG2102|consen 598 EAQDILDTPNS-------------------SDPLTSSLRLLHEIAKILRQKRLDNGALLLRSPELRFLLDEEKPNPQDVE 658 (941)
T ss_pred HHHHHhcCCcc-------------------cchhhhhHHHHHHHHHHHHHHHhccCCcccccHhHHhhhccCCCCccccc
Confidence 99999998421 2367789999999999999999999999999999999999876 789998
Q ss_pred ecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHHcCCccCCCChhHHHHHHHHHHHhh
Q 001256 713 LSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHGLQLDTSSSGQFHQSLEQAREKL 792 (1113)
Q Consensus 713 ~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~~G~~l~~ss~~~l~~sL~~i~~~~ 792 (1113)
.++..++|.||||||++||.+||++|.+.||.+++||+||.|....++.+.++|..+|+.++.++++.|+.+|.++.+..
T Consensus 659 ~~~~~~~n~lveEfmllaN~~vA~~I~~~f~~~alLR~hp~P~~~~~~~~~~~~~~~g~~ld~sS~~~L~~Sl~r~~~~~ 738 (941)
T KOG2102|consen 659 VKELTETNFLVEEFMLLANISVAEKILASFPSLALLRRHPSPPPENFKPLVSLCLELGFNLDTSSSKSLADSLDRIRDDD 738 (941)
T ss_pred eeeeehhhhHHHHHHHHHhHHHHHHHHHhCCchhhhccCCCCccccccHHHHHHHHcCCCccccchHHHhhhHhhhcCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHHHHhhhhhhhhhcc
Q 001256 793 KDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHRRM 872 (1113)
Q Consensus 793 ~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~L~~~~~~~~~~~~ 872 (1113)
.|....+|..+++|+|.+|.|||+|.. +...++|||||+|+|||||||||||+||+|||||++....... .
T Consensus 739 --~p~~~~~l~~l~~r~m~~A~yf~sg~~-~~~~~~HygLa~p~YTHFTsPiRRY~DIivHrqL~~~~~~~~~------~ 809 (941)
T KOG2102|consen 739 --KPYLNTLLRILATRSMTRAVYFCSGSS-DTPQFHHYGLASPLYTHFTSPIRRYADIIVHRQLAAAFLERSP------T 809 (941)
T ss_pred --hHHHHHHHHHHHhhhhhceeEEeeccc-CcchhhchhhcccchhhccCcccccchHHHHHHHHHHhhccCc------c
Confidence 377778899999999999999999973 5678999999999999999999999999999999973221110 0
Q ss_pred CCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001256 873 LPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLK 952 (1113)
Q Consensus 873 ~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~r~s~~l~~~~~lk 952 (1113)
.++...+..+|.+||.|+++|+.|+++|.++|++.|++
T Consensus 810 ------------------------------------------~~~~~~l~~i~~~~N~r~~~a~~a~~~S~~l~~~~~~k 847 (941)
T KOG2102|consen 810 ------------------------------------------APDRPNLSSLAANCNERKKAAKKAQEASTELYLCEYLK 847 (941)
T ss_pred ------------------------------------------ccccccHHHHHhhhhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 01123578899999999999999999999999999999
Q ss_pred hccceEEEEEEeeecCcEEEEEEecCCeEEEEEee
Q 001256 953 KKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYD 987 (1113)
Q Consensus 953 ~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~ 987 (1113)
.+ ....+|+|+.|.++||.||||+||+||+||++
T Consensus 848 ~~-~~~~~a~v~~V~~~~~~v~ipe~G~e~~v~l~ 881 (941)
T KOG2102|consen 848 DK-QVLEEAVVLFVRPNGIDVVIPEYGLEGRVYLD 881 (941)
T ss_pred hc-ccccceEEEEEecCceEEEEcccCceEEEEec
Confidence 98 56789999999999999999999999999999
|
|
| >TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases | Back alignment and domain information |
|---|
| >PRK11642 exoribonuclease R; Provisional | Back alignment and domain information |
|---|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
| >PRK05054 exoribonuclease II; Provisional | Back alignment and domain information |
|---|
| >COG0557 VacB Exoribonuclease R [Transcription] | Back alignment and domain information |
|---|
| >TIGR02062 RNase_B exoribonuclease II | Back alignment and domain information |
|---|
| >PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam | Back alignment and domain information |
|---|
| >COG4776 Rnb Exoribonuclease II [Transcription] | Back alignment and domain information |
|---|
| >cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain | Back alignment and domain information |
|---|
| >PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies | Back alignment and domain information |
|---|
| >cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form | Back alignment and domain information |
|---|
| >cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide | Back alignment and domain information |
|---|
| >PRK08563 DNA-directed RNA polymerase subunit E'; Provisional | Back alignment and domain information |
|---|
| >PRK08582 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription] | Back alignment and domain information |
|---|
| >cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PLN00207 polyribonucleotide nucleotidyltransferase; Provisional | Back alignment and domain information |
|---|
| >cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa | Back alignment and domain information |
|---|
| >cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PRK07252 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PRK05807 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains | Back alignment and domain information |
|---|
| >cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies | Back alignment and domain information |
|---|
| >cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >smart00316 S1 Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain | Back alignment and domain information |
|---|
| >cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease | Back alignment and domain information |
|---|
| >PRK03987 translation initiation factor IF-2 subunit alpha; Validated | Back alignment and domain information |
|---|
| >PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional | Back alignment and domain information |
|---|
| >cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PRK08059 general stress protein 13; Validated | Back alignment and domain information |
|---|
| >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional | Back alignment and domain information |
|---|
| >PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional | Back alignment and domain information |
|---|
| >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase | Back alignment and domain information |
|---|
| >cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PHA02945 interferon resistance protein; Provisional | Back alignment and domain information |
|---|
| >cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits | Back alignment and domain information |
|---|
| >PRK07899 rpsA 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
| >cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >TIGR02063 RNase_R ribonuclease R | Back alignment and domain information |
|---|
| >PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional | Back alignment and domain information |
|---|
| >smart00357 CSP Cold shock protein domain | Back alignment and domain information |
|---|
| >cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain | Back alignment and domain information |
|---|
| >cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain | Back alignment and domain information |
|---|
| >PRK07400 30S ribosomal protein S1; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1113 | ||||
| 2wp8_J | 977 | Yeast Rrp44 Nuclease Length = 977 | 6e-68 | ||
| 4ifd_J | 1003 | Crystal Structure Of An 11-subunit Eukaryotic Exoso | 6e-68 | ||
| 2vnu_D | 760 | Crystal Structure Of Sc Rrp44 Length = 760 | 2e-61 | ||
| 2ix0_A | 663 | Rnase Ii Length = 663 | 6e-17 | ||
| 2ix1_A | 664 | Rnase Ii D209n Mutant Length = 664 | 2e-16 | ||
| 2r7d_A | 469 | Crystal Structure Of Ribonuclease Ii Family Protein | 2e-12 | ||
| 2id0_A | 644 | Escherichia Coli Rnase Ii Length = 644 | 5e-12 |
| >pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977 | Back alignment and structure |
|
| >pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003 | Back alignment and structure |
| >pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760 | Back alignment and structure |
| >pdb|2IX0|A Chain A, Rnase Ii Length = 663 | Back alignment and structure |
| >pdb|2IX1|A Chain A, Rnase Ii D209n Mutant Length = 664 | Back alignment and structure |
| >pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From Deinococcus Radiodurans, Triclinic Crystal Form. Northeast Structural Genomics Target Drr63 Length = 469 | Back alignment and structure |
| >pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii Length = 644 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 | Back alignment and structure |
|---|
Score = 597 bits (1542), Expect = 0.0
Identities = 215/889 (24%), Positives = 341/889 (38%), Gaps = 183/889 (20%)
Query: 147 DNPSHQSEARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLI 206
D + F ++S V L+ G ++ +++ +N LE + VLI
Sbjct: 1 DKDLERDTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLI 60
Query: 207 TGIAAQNRAVEGDFVLIKVDRLSLWAKMKGFSNNSSIVEDSNLPTEANGMHSDICKGKSK 266
G NRA GD V++++ S W
Sbjct: 61 VGQKNLNRAFNGDQVIVELLPQSEWKAPSSI----------------------------- 91
Query: 267 VDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPSTSDSTEKVSSSQ 326
+L + +D+ EA + + N V S +
Sbjct: 92 -----------VLDSEHFDVNDNPDIEAGDDDDNNESSSNTT-------------VISDK 127
Query: 327 QNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDA 386
Q + ++ +PT +VV I RS R+ VG L
Sbjct: 128 QRRLLAKDAMIA---QRSKKIQPTAKVVYIQRRSWRQ--YVGQL---------------- 166
Query: 387 KKNRSSLSVPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDE 446
+ + + + PK+ + + + + KR + ID
Sbjct: 167 APSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKR------------IVISIDS 214
Query: 447 WNEESPFPQAHVLHVFGRGGEVEPQINAILYENAICCSGFSPESLSCLPCV--PWEVPQ- 503
W +P H + G + + A+L E+ + FS + L CLP W+ P
Sbjct: 215 WPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTK 274
Query: 504 ----------EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVSY 553
L RKDLR+ I +IDP D++DAL ++L +G VGVHIADV++
Sbjct: 275 LDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTH 334
Query: 554 FVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGD 613
FV PGTALD E R TSVY++ ++I MLP+LL ++ SL P VDR AFS+ W+L+ + +
Sbjct: 335 FVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSAN 394
Query: 614 VVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKS 673
+V+ ++VIRS SYE AQ ID K + ++ +++
Sbjct: 395 IVNVNFMKSVIRSREAFSYEQAQLRIDDKTQND-------------------ELTMGMRA 435
Query: 674 LYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDSVLSGREDLNFLFEEFMLLANK 732
L ++S LK KR GAL L + + D E P + + N L EEFMLLAN
Sbjct: 436 LLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFMLLANI 495
Query: 733 TAAEVIARAFPDSALLRRHPAPNMRKLREFEAFC-SKHGLQLDTSSSGQFHQSLEQAREK 791
+ A I AFP +A+LRRH AP ++ + + SS SL++ +
Sbjct: 496 SVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVD- 554
Query: 792 LKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLV 851
+D ++ +TR M A YF SG + D+ HY LA +YTHFTSP+RRY D+V
Sbjct: 555 -PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHYGLAVDIYTHFTSPIRRYCDVV 612
Query: 852 VHRTLNAALEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAAL 911
HR L A+ E L H DK+
Sbjct: 613 AHRQLAGAIGYEPLSLTH----------------------RDKNK--------------- 635
Query: 912 KYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWILLKKKEVLLSEARVLALGPRFM 971
+ + + N + + A ++ Y+ +++ V+ + +
Sbjct: 636 ---------MDMICRNINRKHRNAQFAGRASIEYYVGQVMRNN-ESTETGYVIKVFNNGI 685
Query: 972 TIYIEKLAIERRIY------------YDEVEG-LIVEWLETTSTLVLSL 1007
+ + K +E I +DEVE L + + +
Sbjct: 686 VVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYV 734
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 | Back alignment and structure |
|---|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 | Back alignment and structure |
|---|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1113 | |||
| 2vnu_D | 760 | Exosome complex exonuclease RRP44; hydrolase-RNA c | 100.0 | |
| 2wp8_J | 977 | Exosome complex exonuclease DIS3; nucleus, hydrola | 100.0 | |
| 2id0_A | 644 | Exoribonuclease 2; RNAse, exonuclease, hydrolyase, | 100.0 | |
| 2r7d_A | 469 | Ribonuclease II family protein; structural genomic | 100.0 | |
| 2ckz_B | 218 | C25, DNA-directed RNA polymerase III 25 KD polypep | 98.02 | |
| 3ayh_B | 203 | DNA-directed RNA polymerase III subunit RPC8; tran | 97.83 | |
| 4ayb_E | 180 | DNA-directed RNA polymerase; transferase, multi-su | 97.59 | |
| 2c35_B | 172 | Human RPB7, DNA-directed RNA polymerase II 19 kDa | 97.4 | |
| 1go3_E | 187 | DNA-directed RNA polymerase subunit E; transferase | 97.01 | |
| 1luz_A | 88 | Protein K3, protein K2; stranded anti-parallel bet | 96.81 | |
| 1y14_B | 171 | B16, RPB7, DNA-directed RNA polymerase II 19 kDa p | 96.77 | |
| 2b8k_G | 215 | B16, DNA-directed RNA polymerase II 19 kDa polypep | 96.73 | |
| 3h0g_G | 172 | DNA-directed RNA polymerase II subunit RPB7; trans | 96.59 | |
| 1kl9_A | 182 | Eukaryotic translation initiation factor 2 subuni; | 96.38 | |
| 2a19_A | 175 | EIF-2- alpha, eukaryotic translation initiation fa | 96.34 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 96.28 | |
| 2eqs_A | 103 | ATP-dependent RNA helicase DHX8; S1 domain, OB-fol | 96.18 | |
| 2k52_A | 80 | Uncharacterized protein MJ1198; metal-binding, zin | 96.01 | |
| 2cqo_A | 119 | Nucleolar protein of 40 kDa; S1 domain, OB-fold, s | 95.59 | |
| 2k4k_A | 130 | GSP13, general stress protein 13; cytoplasm, stres | 95.57 | |
| 3aev_A | 275 | Translation initiation factor 2 subunit alpha; pro | 94.56 | |
| 1q8k_A | 308 | Eukaryotic translation initiation factor 2 subunit | 94.04 | |
| 2khi_A | 115 | 30S ribosomal protein S1; acetylation, phosphoprot | 93.92 | |
| 2khj_A | 109 | 30S ribosomal protein S1; OB fold, acetylation, ph | 93.69 | |
| 4aid_A | 726 | Polyribonucleotide nucleotidyltransferase; transfe | 91.23 | |
| 3cw2_C | 266 | Translation initiation factor 2 subunit alpha; AIF | 89.69 | |
| 1wi5_A | 119 | RRP5 protein homolog; S1 domain, OB-fold, structur | 89.14 | |
| 1a62_A | 130 | RHO; transcription termination, termination, RNA b | 87.82 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 87.28 | |
| 3cdi_A | 723 | Polynucleotide phosphorylase; mRNA turnover, RNAse | 85.34 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 83.43 |
| >2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-141 Score=1310.98 Aligned_cols=713 Identities=29% Similarity=0.439 Sum_probs=593.4
Q ss_pred CCccCccCCCCHHHHHHHHHcCCeEEEEEEeccCCceeEEEEeCCcceeEEEeCcCCccccCCCCEEEEEEccchhhhhc
Q 001256 155 ARCKIFAPHWSMEAVNEALEKGDAFKALYRVNAHNRLEAYCKIEGVQTDVLITGIAAQNRAVEGDFVLIKVDRLSLWAKM 234 (1113)
Q Consensus 155 ~~k~~F~~hl~~~~v~~gLk~G~l~~G~lrVn~~N~~eAyV~~~g~~~Dv~I~G~~~rNRAl~GDvVaVeLlp~~~W~~~ 234 (1113)
.++.+|+||||+++|++||++|+|++|+||||++|+++|||.+++.+.||||+|+++||||+|||+|+|+|+|..+|..+
T Consensus 9 ~~~~~f~~yl~~~~l~~~~~~g~l~~G~l~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~~~~~~~ 88 (760)
T 2vnu_D 9 FSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQSEWKAP 88 (760)
T ss_dssp --CCCCCCCCCHHHHHHHHHHTSEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCGGGCBCC
T ss_pred cCCCcCcccCCHHHHHHHHHcCCEEEEEEEEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEecccccccc
Confidence 67889999999999999999999999999999999999999999998999999999999999999999999999999865
Q ss_pred cCCCCCCcccccCCCcccccCCCccccccCccccccccccccccccccCCCCCCCCchhhhhhhhhhhccccccCCCCCC
Q 001256 235 KGFSNNSSIVEDSNLPTEANGMHSDICKGKSKVDVSYEYSNCTLLSEKGIHHDDDSSSEAYNQEMIEREGYNYINGHHPS 314 (1113)
Q Consensus 235 ~~~~~~~~~~e~~~~~~e~~e~~~~~~~~k~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1113)
++.. .++.....+++. .+ ..+.. +++...+ .+. ..
T Consensus 89 ~~~~-----~~~~~~~~~~~~-~~----~~~~~-------------------~~~~~~~---------------~~~-~~ 123 (760)
T 2vnu_D 89 SSIV-----LDSEHFDVNDNP-DI----EAGDD-------------------DDNNESS---------------SNT-TV 123 (760)
T ss_dssp CSSC-----BCTTTCC----------------------------------------------------------------
T ss_pred cccc-----cccccccccccc-cc----ccccc-------------------ccccccc---------------ccc-cc
Confidence 5310 000000000000 00 00000 0000000 000 00
Q ss_pred CCCccccccccccccchhhHhhhheeeccCCCCCccEEEEEEEecCCCCcceEEEEEeccccccCCCCcccccccCCCCC
Q 001256 315 TSDSTEKVSSSQQNDGMNAIERLSAMISSYPTKRPTGRVVSIIERSPRRDGIVGFLNVNQWFNYKGGSRKDAKKNRSSLS 394 (1113)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~VV~IleR~~~~~~~vG~l~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1113)
.++.. ......+.... .....++|+|+||+||+|+++ .|||+|..... .+ .
T Consensus 124 ~~~~~---~~~~~~~~~~~--------~~~~~~~~eG~Vv~IleR~~~--~~vG~l~~~~~--------------~~--~ 174 (760)
T 2vnu_D 124 ISDKQ---RRLLAKDAMIA--------QRSKKIQPTAKVVYIQRRSWR--QYVGQLAPSSV--------------DP--Q 174 (760)
T ss_dssp --------------------------------CBCBEEEEEEEECCCC--EEEEEECGGGC--------------CT--T
T ss_pred ccchh---hhhhhhhhhhc--------cccCCCCceEEEEEEEEECCc--eEEEEEEEccC--------------cc--c
Confidence 00100 00000000000 001235799999999999984 49999983110 00 0
Q ss_pred CCCCceEEEEeCCCCCCceEEecCCCChhhhhhcccCCccccceEEEEEEeecCCCCCCCcEEEEEEcCCCCChHHHHHH
Q 001256 395 VPDREYIQLTPTHPKYPKMVVLVKDLPDSIKKRLEEGDATIEMELVAARIDEWNEESPFPQAHVLHVFGRGGEVEPQINA 474 (1113)
Q Consensus 395 ~~~~~~~~~~P~D~riP~i~i~~~~~p~~~~~~~~~gd~~~~~~lvvv~I~~Wp~~s~~P~G~Iv~~LG~~gd~~~e~~a 474 (1113)
....+++||+|.|+|+|.|.|++++.+. +.+.+|+|+|++||..+.+|.|+|+++||..+++++|+++
T Consensus 175 ~~~~~~~~~~P~d~ri~~i~i~~~~~~~------------~~g~~vvv~i~~~p~~~~~p~G~i~~~LG~~~d~~~e~~~ 242 (760)
T 2vnu_D 175 SSSTQNVFVILMDKCLPKVRIRTRRAAE------------LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEA 242 (760)
T ss_dssp CCSCEEEEEEESSTTSCCEEEEETTGGG------------GTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHH
T ss_pred cCccceEEEEECCCCCccEEEecccccc------------cCCCEEEEEEeeccCCCCCCcEEEEEEeCCCCCchhHHHH
Confidence 0112578999999999999998765421 1245899999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCCChhhhccCCCC--CCCCCh----------h-hhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCCe
Q 001256 475 ILYENAICCSGFSPESLSCLPCV--PWEVPQ----------E-ELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGI 541 (1113)
Q Consensus 475 IL~e~~i~~~~Fs~~vl~~l~~~--~~~i~~----------~-e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~ 541 (1113)
||.+|+|+..+||++|++|++.. +|.+++ + +.++|+|||++++|||||++|+||||||||+++++|+
T Consensus 243 il~~~~l~~~~F~~~vl~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~ 322 (760)
T 2vnu_D 243 LLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGN 322 (760)
T ss_dssp HHHHTTCCCSCCCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSC
T ss_pred HHHHCCCCCcCCCHHHHHHHHhcccccccccccccccccccccchhcccccccCeEEEEcCCCCCcccceEEEEEcCCCc
Confidence 99999996556999999999998 898773 3 6789999999999999999999999999999999999
Q ss_pred EEEEEEeccccccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEEEEEEE
Q 001256 542 SRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGR 621 (1113)
Q Consensus 542 ~~lgVHIADVS~fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d~~f~~ 621 (1113)
|+||||||||||||+|||+||+||++||||||||++++||||+.||+++|||+||++|+||||.|+||++|+|+++||++
T Consensus 323 ~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~ 402 (760)
T 2vnu_D 323 WEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMK 402 (760)
T ss_dssp EEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCHHHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceee
Q 001256 622 TVIRSCCKLSYEHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFL 701 (1113)
Q Consensus 622 SvIrS~~rLTYe~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~ 701 (1113)
|+|||+++|||++||++|++.. ...++.++|+.|++||++||++|+++|+|+|+.|+++|.
T Consensus 403 svI~s~~rltY~~v~~~l~~~~-------------------~~~~l~~~L~~L~~la~~lr~~R~~~Gai~~~~pe~~~~ 463 (760)
T 2vnu_D 403 SVIRSREAFSYEQAQLRIDDKT-------------------QNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVH 463 (760)
T ss_dssp EEEEBSEEEEHHHHHHHHHCTT-------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEE
T ss_pred EEEEecceEcHHHHHHHHhCCC-------------------cchHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCceEEE
Confidence 9999999999999999998731 124677899999999999999999999999999999999
Q ss_pred cC-CCCCeEEeEecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHHc-CCccCCCChh
Q 001256 702 FD-EYGTPYDSVLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKH-GLQLDTSSSG 779 (1113)
Q Consensus 702 lD-e~g~p~~v~~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~~-G~~l~~ss~~ 779 (1113)
+| ++|.|+++..+++.+||+|||||||+||++||+|+.+++|.|++||+|+.|++++++.|.+++..+ |+.++..+++
T Consensus 464 ld~e~g~~~~i~~~~~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l~~l~~~~~~~~g~~l~~~~~~ 543 (760)
T 2vnu_D 464 MDSETSDPNEVEIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSK 543 (760)
T ss_dssp ECSSSSCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHH
T ss_pred EecCCCcEEEEEEcCCccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHHHHHHHHHHHccCCCcCCCCHH
Confidence 99 899999999999999999999999999999999999999999999999999999999999999999 9999988899
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHH
Q 001256 780 QFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAA 859 (1113)
Q Consensus 780 ~l~~sL~~i~~~~~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~ 859 (1113)
.|+.+|+++.+ ..++.+..+|..+++|+|++|+|+|+|.+ ++++.+|||||++.|||||||||||+||||||||+++
T Consensus 544 ~l~~~l~~~~~--~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~-~~~~~~HfgLa~~~YtHfTSPIRRY~DLivHR~L~~~ 620 (760)
T 2vnu_D 544 ALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGA 620 (760)
T ss_dssp HHHHHHHTCCB--TTBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CchHHHHHHHHHHHHHhhhCccccccCcC-CCCCCCceecCCCceeccCchHhhhHHHHHHHHHHHH
Confidence 99988887643 24455566777889999999999999875 5689999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001256 860 LEAEKLYWKHRRMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVK 939 (1113)
Q Consensus 860 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~ 939 (1113)
|.+++.... ..+.+.|..+|+|||.|++.|+.|+
T Consensus 621 l~~~~~~~~----------------------------------------------~~~~~~l~~~~~~~s~~er~A~~ae 654 (760)
T 2vnu_D 621 IGYEPLSLT----------------------------------------------HRDKNKMDMICRNINRKHRNAQFAG 654 (760)
T ss_dssp TTSSCCCGG----------------------------------------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCccc----------------------------------------------ccCHHHHHHHHHHhhHHHHHHHHHH
Confidence 975421000 0013568899999999999999999
Q ss_pred HHHHHHHHHHHHHhccceEEEEEEeeecCcEEEEEEecCCeEEEEEeeecC--CcEEEEecccceEEEeeecc----cce
Q 001256 940 DACVKLYMWILLKKKEVLLSEARVLALGPRFMTIYIEKLAIERRIYYDEVE--GLIVEWLETTSTLVLSLCAH----KRS 1013 (1113)
Q Consensus 940 r~s~~l~~~~~lk~~~g~~~~a~V~~V~~~~f~V~Ip~~giEg~V~~~~l~--~~~~e~~~~~~~lv~~~~~~----k~~ 1013 (1113)
|++.++|++.||+.+. .+++|+|++|.++|++|+||++|+||+||+++|. ++||+|++.+++|++. ++ ++.
T Consensus 655 r~~~~~~~~~~l~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~--~~~~~~~~~ 731 (760)
T 2vnu_D 655 RASIEYYVGQVMRNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFV--PTNSDKPRD 731 (760)
T ss_dssp HHHHHHHHHHHHHTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEEC--CTTCSSCEE
T ss_pred HHHHHHHHHHHhhcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEe--cCCCccCcE
Confidence 9999999999999998 8999999999999999999999999999999997 8999999999999993 43 466
Q ss_pred eecCCCceEEE
Q 001256 1014 FKRGGPGNYRA 1024 (1113)
Q Consensus 1014 ~~~g~~v~~r~ 1024 (1113)
|++||.|+|+.
T Consensus 732 ~~lGD~V~VkV 742 (760)
T 2vnu_D 732 VYVFDKVEVQV 742 (760)
T ss_dssp EETTCEEEEEE
T ss_pred EecCCEEEEEE
Confidence 77776666554
|
| >2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A | Back alignment and structure |
|---|
| >2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A | Back alignment and structure |
|---|
| >2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E | Back alignment and structure |
|---|
| >2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
| >1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
| >1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5 | Back alignment and structure |
|---|
| >1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ... | Back alignment and structure |
|---|
| >2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 | Back alignment and structure |
|---|
| >3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 | Back alignment and structure |
|---|
| >2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A | Back alignment and structure |
|---|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
| >2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
| >3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A | Back alignment and structure |
|---|
| >1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1 | Back alignment and structure |
|---|
| >2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A | Back alignment and structure |
|---|
| >3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B* | Back alignment and structure |
|---|
| >1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5 | Back alignment and structure |
|---|
| >1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A | Back alignment and structure |
|---|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A | Back alignment and structure |
|---|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1113 | ||||
| d2vnud4 | 416 | b.40.4.16 (D:495-910) Exosome complex exonuclease | 2e-79 | |
| d2ix0a4 | 385 | b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Esch | 3e-69 | |
| d2r7da2 | 401 | b.40.4.16 (A:3-403) Ribonuclease II family protein | 4e-46 | |
| d2vnud3 | 148 | b.40.4.5 (D:252-399) Exosome complex exonuclease R | 4e-21 | |
| d2vnud1 | 95 | b.40.4.5 (D:400-494) Exosome complex exonuclease R | 5e-10 |
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 416 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Score = 264 bits (675), Expect = 2e-79
Identities = 147/400 (36%), Positives = 207/400 (51%), Gaps = 37/400 (9%)
Query: 486 FSPESLSCLPCV--PWEVPQE-----------ELLSRKDLRNFCIFTIDPSTATDLDDAL 532
FS + L CLP W+ P + L RKDLR+ I +IDP D++DAL
Sbjct: 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDAL 60
Query: 533 SIERLSDGISRVGVHIADVSYFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGS 592
++L +G VGVHIADV++FV PGTALD E R TSVY++ ++I MLP+LL ++ S
Sbjct: 61 HAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 120
Query: 593 LNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSYEHAQDIIDGKFDVESSNTLG 652
L P VDR AFS+ W+L+ + ++V+ ++VIRS SYE AQ I
Sbjct: 121 LKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI------------- 167
Query: 653 EGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDS 711
+ + ++ +++L ++S LK KR GAL L + + D E P +
Sbjct: 168 ------DDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV 221
Query: 712 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSKHG- 770
+ N L EEFMLLAN + A I AFP +A+LRRH AP +
Sbjct: 222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKN 281
Query: 771 LQLDTSSSGQFHQSLEQAREKLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHY 830
+ + SS SL++ + +D ++ +TR M A YF SG + D+ HY
Sbjct: 282 MSISLESSKALADSLDRCVD--PEDPYFNTLVRIMSTRCMMAAQYFYSGAYSYP-DFRHY 338
Query: 831 ALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 870
LA +YTHFTSP+RRY D+V HR L A+ E L HR
Sbjct: 339 GLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTHR 378
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 385 | Back information, alignment and structure |
|---|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401 | Back information, alignment and structure |
|---|
| >d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 148 | Back information, alignment and structure |
|---|
| >d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 95 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1113 | |||
| d2vnud4 | 416 | Exosome complex exonuclease RRP44 {Saccharomyces c | 100.0 | |
| d2ix0a4 | 385 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 100.0 | |
| d2r7da2 | 401 | Ribonuclease II family protein DR0020 {Deinococcus | 100.0 | |
| d2vnud3 | 148 | Exosome complex exonuclease RRP44 {Saccharomyces c | 99.95 | |
| d2vnud1 | 95 | Exosome complex exonuclease RRP44 {Saccharomyces c | 99.46 | |
| d2ix0a1 | 90 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.99 | |
| d2vnud2 | 88 | Exosome complex exonuclease RRP44 {Saccharomyces c | 98.64 | |
| d2ix0a3 | 87 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.64 | |
| d1go3e1 | 106 | C-terminal domain of RNA polymerase II subunit RBP | 98.19 | |
| d2ix0a2 | 79 | Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 | 98.09 | |
| d1y14b1 | 91 | C-terminal domain of RNA polymerase II subunit RBP | 97.85 | |
| d2c35b1 | 94 | C-terminal domain of RNA polymerase II subunit RBP | 97.79 | |
| d1kl9a2 | 86 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 95.88 | |
| d2ahob2 | 84 | Eukaryotic initiation factor 2alpha, eIF2alpha, N- | 95.27 | |
| d1sroa_ | 76 | S1 RNA-binding domain of polyribonucleotide phosph | 93.18 | |
| d3bzka4 | 94 | Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287] | 92.61 | |
| d2je6i1 | 87 | S1-domain of exosome complex RNA-binding protein 1 | 89.68 | |
| d2z0sa1 | 88 | S1-domain of exosome complex RNA-binding protein 1 | 88.58 | |
| d2ba0a1 | 83 | S1-domain of exosome complex RNA-binding protein 1 | 88.37 | |
| d1e3pa2 | 62 | S1 RNA-binding domain of polyribonucleotide phosph | 86.88 |
| >d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RNB domain-like domain: Exosome complex exonuclease RRP44 species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=100.00 E-value=1.9e-84 Score=751.03 Aligned_cols=401 Identities=38% Similarity=0.599 Sum_probs=355.5
Q ss_pred CChhhhccCCCC--CCCCCh-----------hhhccCccCCCceEEEEcCCCCCCCCceEEEEEcCCCeEEEEEEecccc
Q 001256 486 FSPESLSCLPCV--PWEVPQ-----------EELLSRKDLRNFCIFTIDPSTATDLDDALSIERLSDGISRVGVHIADVS 552 (1113)
Q Consensus 486 Fs~~vl~~l~~~--~~~i~~-----------~e~~~R~DLr~l~vfTIDp~~AkDlDDAlSie~l~~G~~~lgVHIADVS 552 (1113)
||++||+|+|.. +|.++. .+..+|+|||++++|||||++|+|+||||||+++++|+|+|||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~Dl~~l~~~tID~~~a~d~DDAisi~~~~~g~~~l~VHIADva 80 (416)
T d2vnud4 1 FSKKVLECLPAEGHDWKAPTKLDDPEAVSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVT 80 (416)
T ss_dssp CCHHHHTTSCTTGGGCCCCSSTTCHHHHHHCGGGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHH
T ss_pred CCHHHHhhcccccCcccCchhhhhhhhccCchhhcCCccCCCCCEEEEcCCCCccccceEEEEEeCCCcEEEEEEEccHH
Confidence 899999999875 677653 2346899999999999999999999999999999999999999999999
Q ss_pred ccccCCCHhhHHHHhccceeecCCCcccCCChhhhhcccCCCCCCceeEEEEEEEEcCCCCEEEEEEEEEEEecccccCH
Q 001256 553 YFVLPGTALDIEAQVRSTSVYMLQRKIPMLPVLLSEEVGSLNPGVDRLAFSIFWDLNSAGDVVDRWIGRTVIRSCCKLSY 632 (1113)
Q Consensus 553 ~fV~pgS~LD~eA~~RgtSVYLpdrviPMLP~~Ls~~lcSL~pg~dRlAfSv~~~id~~G~I~d~~f~~SvIrS~~rLTY 632 (1113)
+||++||+||++|++||||+|||++++||||+.|++++|||.||++|+||||.+.+|.+|+|.+++|++|+|+|.++|||
T Consensus 81 ~~v~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~ls~~~~SL~~~~~r~a~s~~~~~~~~g~i~~~~~~~s~I~~~~~ltY 160 (416)
T d2vnud4 81 HFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSY 160 (416)
T ss_dssp HHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEH
T ss_pred HhhCCCCHHHHHHHHhCeeEeCCCCccccCCHHHhhhhhcccCCcceeeEEeeeeeccccccccceeehhhhccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCccccCccCCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCceeecC-CCCCeEEe
Q 001256 633 EHAQDIIDGKFDVESSNTLGEGWPQLYGQFEWSDVVRSIKSLYEVSKILKDKRFTDGALRLENSKPVFLFD-EYGTPYDS 711 (1113)
Q Consensus 633 e~vq~iLd~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~L~~lA~~Lr~~R~~~Gal~ld~pe~~~~lD-e~g~p~~v 711 (1113)
++|+++|++... ..++...|..|+++|+.|+++|..+|+|.|+.++.++.+| ++|.+..+
T Consensus 161 ~ev~~~l~~~~~-------------------~~~~~~~l~~L~~~a~~l~~~R~~~g~l~~~~~~~~~~~d~~~~~~~~~ 221 (416)
T d2vnud4 161 EQAQLRIDDKTQ-------------------NDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEV 221 (416)
T ss_dssp HHHHHHHHCTTC-------------------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEECSSSSCEEEE
T ss_pred hhHHHHhccccc-------------------cccchhHHHHHHHHHHHHHHHHHhcCCcccCCCceEEEecccccccccc
Confidence 999999987321 2356688999999999999999999999999999999998 55677777
Q ss_pred EecCCccHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEecCCCCHHHHHHHHHHHHH-cCCccCCCChhHHHHHHHHHHH
Q 001256 712 VLSGREDLNFLFEEFMLLANKTAAEVIARAFPDSALLRRHPAPNMRKLREFEAFCSK-HGLQLDTSSSGQFHQSLEQARE 790 (1113)
Q Consensus 712 ~~~~~~~a~~LIEEfMllAN~~VA~~l~~~~p~~allR~H~~P~~~kl~~l~~~~~~-~G~~l~~ss~~~l~~sL~~i~~ 790 (1113)
....+.+||.|||||||+||.+||+++.++++.+++||+|+.|+.++++.|.+++.. .|+.++.++...+..+|.++.+
T Consensus 222 ~~~~~~~s~~lVeE~Mi~AN~~vA~~l~~~~~~~~~~R~h~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 301 (416)
T d2vnud4 222 EIKKLLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVD 301 (416)
T ss_dssp EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGGHHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCB
T ss_pred ceeecccchhhHHHHhhhhhHHHHHHHHHhCCCCCccceeCCCCHHHHHHHHHHHHHhcccCcCccchhhHHHHHHHHhC
Confidence 778889999999999999999999999988899999999999999999999888754 4677777777788888777654
Q ss_pred hhcCCHHHHHHHHHHHhcccCCcEecccCCCCCCCCcCccccCCCcccccccCCCchhhHHHHHHHHHHHHhhhhhhhhh
Q 001256 791 KLKDDYVLFDILINYATRPMQLASYFCSGDFKDDTDWGHYALAFPVYTHFTSPLRRYPDLVVHRTLNAALEAEKLYWKHR 870 (1113)
Q Consensus 791 ~~~~~p~~~~~L~~~~lR~M~~A~Y~~sg~~~s~~~~~HfgLa~~~YTHFTSPIRRYaDLIVHR~L~a~L~~~~~~~~~~ 870 (1113)
. .++.....+...++|+|.+|.|+..+.. +..+.+|||||++.|||||||||||+||+|||||+++|.+++.....
T Consensus 302 ~--~~~~~~~~i~~~~~~~~~~a~~~~~~~~-s~~~~~H~gLgl~~YthfTSPIRRY~DLv~hrqL~a~l~~~~~~~~~- 377 (416)
T d2vnud4 302 P--EDPYFNTLVRIMSTRCMMAAQYFYSGAY-SYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTH- 377 (416)
T ss_dssp T--TBTTHHHHHHHHHHTTSCCCEEEEGGGS-CGGGGCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHTTSSCCCGGG-
T ss_pred c--cCchHHHHHHHHHHHHHHHHHhhccccC-CCCccCcHhhCcccccccCcHHhhHHHHHHHHHHHHHHcCCCCCCCh-
Confidence 3 2334456677888999999999877765 56789999999999999999999999999999999999865321000
Q ss_pred ccCCCCCCccccccccccccccccchhhhhhhhhHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001256 871 RMLPKNNHREGVRGRFLTGIFYDKDAAESLEGREALSVAALKYGVPCADILVNVATHCNDRKLACRNVKDACVKLYMWIL 950 (1113)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~i~~~~~~~es~~~~e~l~~~~~k~~lp~~~~l~~ia~~~N~r~~~Ar~A~r~s~~l~~~~~ 950 (1113)
. +.+.|..+|.+||++++.|++|||++.++|+|+|
T Consensus 378 ---------------------------~------------------~~e~l~~i~~~~~~~e~~a~~aer~~~~~~~~~~ 412 (416)
T d2vnud4 378 ---------------------------R------------------DKNKMDMICRNINRKHRNAQFAGRASIEYYVGQV 412 (416)
T ss_dssp ---------------------------G------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1356889999999999999999999999999999
Q ss_pred HHhc
Q 001256 951 LKKK 954 (1113)
Q Consensus 951 lk~~ 954 (1113)
|+++
T Consensus 413 lk~~ 416 (416)
T d2vnud4 413 MRNN 416 (416)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 9875
|
| >d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]} | Back information, alignment and structure |
|---|