Citrus Sinensis ID: 001282

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------111

MSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

ccccccccccccccccccEEEEEEcccEEEccEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHcccccEEEEEEEEEEEHHHHHHcccEEEEEccccEEEEEEEEEccEEEEEEcccEEEEEccEEEEccEEEEcccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEcccccccccccccccccEEEEccccccccccccccccEEccccccccccccccccccccEEccccccccccccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccEEEEEccccEEEEEEEEEccccccccccccccccccEEEEEcccccccccEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccEEEEEEccccccccccEEcEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccc

ccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEHccEEEEEcccEEEEcccccEccccEEEccccccHHHHHEEEEHHEEEEEEccccEEEccccccccccccccEccccccccHHHccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEcccccccccccccEcccccccccccccccccEEEcccEEcccccccccccccEcccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccccccccEEccccccccccccHHHHHHHHHHHHcccccEEccccccccEcccccccccEEEEEEccccccccEEEEEEEEEEEEEccccccccccccccccEcccccccccccEEEEccccccEEccccccHHHcccccccHccccEEEEEEcccccccccccEEccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccccHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHccEEcccccHEEEEHHHHcccccccccccHHHHccccEEEEEEcccccccccEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHccEEEEEHHEHHHHccHHEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEccHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccc

MSTDTETLllefpnqplwtnvyvqncaratVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEmlvdgggdATVATSLLEASNLIVLKEFSIIHSNANLEVHGQgllnlsgpgdrIEAQRLVLALFYSIhvgpgsvlrsplenattdavtprlyceiqdcpvellhppedcnvnsslsFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgmgctggvgrgkvigngvgsggghggkgglgcfndscveggisygnanlpcelgsgsgndtsgnstagggiivmgsfehplsslsvegsvkadgqsfedlstkknyvvrngsiggagggsgGTILLFLHTldigdsavlssvggygshmggggggggrihfhwsdiptgdvyqpiasvrgsiriggglgghelgggengtttgkacpkglygifceecpvgtyknvtgsdkslchqcppqefphraVYISVrggiaetpcpyrciseryhmphcYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKfvgvdelpgpaptqhgsqidhsfpfLESLNEVLEtnraeeshshvhrmyfmgpntfsqpwhlphtppeqIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYeglkvaatPDLMLAYLDFFlggdekrtdlppclhhrfpmslifggdgsymapfslqnDNILTSLmsqlvpptICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLEthanptlqlhglRVDLAWFQATACGYCQYGLLVYAvggeneptsigsfdrgrlieresrvksidmenpsgrlreETLLTRAQRSSESYMKRkrshggiidtnnvqMLEERRDIFYFLSFIvhntkpvghqdLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILplgillpfpaginalfshgprrsvGLARVYALWNVTSLINVGVAFLCGYVhyssgsspnkkvpnfqpwnfsmdesewwifpAGLVLCKIFQSQLVNWHVANleiqdrtlysNDFELFWQS

MSTDTETLllefpnqplWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVgpgsvlrspleNATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARtisvqssgaisasgMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGqsfedlstkknYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENeptsigsfdrgrlieresrvksidmenpsgrlreetlltraqrssesymkrkrshggiidtnnvqMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYssgsspnkkVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

MSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASgmgctggvgrgkvigngvgsggghggkgglgCFNDSCVEGGISYGNANLPCELgsgsgndtsgnstagggIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNgsiggagggsggTILLFLHTLDIGDSAVLSSVggygshmggggggggRIHFHWSDIPTGDVYQPIASVRGSIRIggglgghelgggengtttgKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWlfclllvgllillalvlsvARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDlvglvisvlllgdfslvlltllqlysislVDvflvlfilplgillpfpagiNALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

*******LLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCE*****************GIIVMGSF***************************NYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVL*******************IHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDEL*****************FL******************VHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE**********************************************************IIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYS*********PNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFW**

**TDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLEN****AVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGK****************GLGCFNDSCVEGGISYGNANLP*********************IVMGSFEHPLSSLSVEGSVKAD**************************SGGTILLFLHTLDIG*********************GGRIHFHWSDIPTGDVYQPIASVR********************TTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFV********************FPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGG*********************************************************GGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQ*

MSTDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELGSGSGNDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTR*************SHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

*****ETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYATSEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVLKEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTDAVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRARTISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNANLPCELG**********STAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDIPTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGP******SQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATACGYCQYGLLVYAVGGE************************************TL*T******ESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLLLGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYALWNVTSLINVGVAFLCGYVHYSSG***********PWNFSMDESEWWIFPAGLVLCKIFQSQLVNWHVANLEIQDRTLYSNDFELFWQS

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1108
296081597		1439	unnamed protein product [Vitis vinifera]	0.988	0.760	0.805	0.0
359475929		1416	PREDICTED: uncharacterized protein LOC10	0.967	0.757	0.798	0.0
255550884		1426	conserved hypothetical protein [Ricinus	0.972	0.755	0.815	0.0
224088972		1412	predicted protein [Populus trichocarpa]	0.957	0.751	0.779	0.0
224141605		1416	predicted protein [Populus trichocarpa]	0.963	0.754	0.794	0.0
356510059		1447	PREDICTED: uncharacterized protein LOC10	0.997	0.763	0.786	0.0
449461397		1448	PREDICTED: uncharacterized protein LOC10	0.986	0.754	0.759	0.0
356515645		1417	PREDICTED: uncharacterized protein LOC10	0.969	0.757	0.784	0.0
334187625		1476	uncharacterized protein [Arabidopsis tha	0.992	0.745	0.745	0.0
449507269		1417	PREDICTED: uncharacterized LOC101205923	0.958	0.749	0.747	0.0

>gi\|296081597\|emb\|CBI20602.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1674 bits (4336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 893/1109 (80%), Positives = 981/1109 (88%), Gaps = 14/1109 (1%)

Query: 2    STDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYAT 61
            STDT+TLLLEFP QPLWTNVYV++ A+ATVPLLWSRVQVQGQISL CGGVLSFGLAHYA 
Sbjct: 343  STDTDTLLLEFPYQPLWTNVYVRDHAKATVPLLWSRVQVQGQISLYCGGVLSFGLAHYAL 402

Query: 62   SEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVL 121
            SEFELLAEELLMSDS+IKVYGALRM+VK+FLMWNS++L+DGGGDA VATSLLEASNL+VL
Sbjct: 403  SEFELLAEELLMSDSIIKVYGALRMSVKMFLMWNSKLLIDGGGDANVATSLLEASNLVVL 462

Query: 122  KEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTD 181
            KE S+IHSNANL VHGQGLLNLSGPGD IEAQRLVL+LFYSIHVGPGSVLR PLENATTD
Sbjct: 463  KESSVIHSNANLGVHGQGLLNLSGPGDWIEAQRLVLSLFYSIHVGPGSVLRGPLENATTD 522

Query: 182  AVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRART 241
            AVTPRLYCE+QDCP ELLHPPEDCNVNSSLSFTLQICRVEDI V GL++GSVVHFHRART
Sbjct: 523  AVTPRLYCELQDCPTELLHPPEDCNVNSSLSFTLQICRVEDITVQGLIKGSVVHFHRART 582

Query: 242  ISVQSSGAISASGMGCTGGVGRGKVIGNGVGSGGGHGGKGGLGCFNDSCVEGGISYGNAN 301
            I+VQSSG IS S MGCTGGVGRGK + +G+GSGGGHGGKGG GC+  SCVEGGISYGNA+
Sbjct: 583  IAVQSSGKISTSRMGCTGGVGRGKFLSSGLGSGGGHGGKGGDGCYKGSCVEGGISYGNAD 642

Query: 302  LPCELGSGSG--NDTSGNSTAGGGIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNY 359
            LPCELGSGSG  NDT   STAGGG+IVMGS EHPLSSLS+EGSVKADG+S  + +    Y
Sbjct: 643  LPCELGSGSGSGNDTLDGSTAGGGVIVMGSLEHPLSSLSIEGSVKADGESSRESTRNNYY 702

Query: 360  VVRNGSIGGAGGGSGGTILLFLHTLDIGDSAVLSSVGGYGSHMGGGGGGGGRIHFHWSDI 419
             + NGS    GGGSGGTILLFL +L +G++AVLSS+GG+GS  GGGGGGGGRIHFHWSDI
Sbjct: 703  SMNNGSNVNPGGGSGGTILLFLRSLALGEAAVLSSIGGHGSLHGGGGGGGGRIHFHWSDI 762

Query: 420  PTGDVYQPIASVRGSIRIGGGLGGHELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNV 479
            PTGDVYQPIASV+GSI   GGL   + G GENGT TGKACP+GLYGIFCEECP GTYKNV
Sbjct: 763  PTGDVYQPIASVKGSIHSRGGLARDQSGMGENGTVTGKACPRGLYGIFCEECPAGTYKNV 822

Query: 480  TGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFG 539
            TGSD+SLC  CP  E P RA+YISVRGGIAETPCPY+CIS+RYHMPHCYTALEELIYTFG
Sbjct: 823  TGSDRSLCRHCPYHELPRRAIYISVRGGIAETPCPYKCISDRYHMPHCYTALEELIYTFG 882

Query: 540  GPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLE 599
            GPWLFCLLL+G+LILLALVLSVARMKFVGVDE PGPAPTQHGSQIDHSFPFLESLNEVLE
Sbjct: 883  GPWLFCLLLLGVLILLALVLSVARMKFVGVDESPGPAPTQHGSQIDHSFPFLESLNEVLE 942

Query: 600  TNRAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHW 659
            TNRAEES SHVHRMYFMGPNTFS+PWHLPHTPPEQIKEIVYEGAFN FVDEINAIA Y W
Sbjct: 943  TNRAEESQSHVHRMYFMGPNTFSEPWHLPHTPPEQIKEIVYEGAFNGFVDEINAIAAYQW 1002

Query: 660  WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVA 719
            WEG+++SIL+ILAYPLAWSWQQWRRR KLQ+LRE+VRS YDHACLRSCRSRALYEGLKVA
Sbjct: 1003 WEGSMHSILSILAYPLAWSWQQWRRRKKLQQLREFVRSGYDHACLRSCRSRALYEGLKVA 1062

Query: 720  ATPDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMS 779
            AT DLMLA++DFFLGGDEKRTDLP  L  RFPMSL FGGDGSYMAPFSL +DNILTSLMS
Sbjct: 1063 ATSDLMLAHVDFFLGGDEKRTDLPFRLQQRFPMSLPFGGDGSYMAPFSLNSDNILTSLMS 1122

Query: 780  QLVPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQA 839
            Q +PPT  YRLVAGLNAQLRLVRRGRLR TFRPVLRWLETHA+P L++HG++VDLAWFQ+
Sbjct: 1123 QAIPPTTWYRLVAGLNAQLRLVRRGRLRVTFRPVLRWLETHASPALRVHGVQVDLAWFQS 1182

Query: 840  TACGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRA 899
            TACGYCQYGLLVYAV  E E T +   D     E +SR     M           LL+ A
Sbjct: 1183 TACGYCQYGLLVYAVEDETESTPVDGVDGAIQNEHQSRDFGAAM-----------LLSGA 1231

Query: 900  QRSSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQDLVGLVISVLL 959
            +RS+ES MKRK+ +G I+DTN++ MLEE++DIFY LSFI+HNTKPVG  DLVGLVIS+LL
Sbjct: 1232 RRSTESLMKRKKPYGYILDTNSLHMLEEKKDIFYPLSFIIHNTKPVGQHDLVGLVISMLL 1291

Query: 960  LGDFSLVLLTLLQLYSISLVDVFLVLFILPLGILLPFPAGINALFSHGPRRSVGLARVYA 1019
            L D SLVLLTLLQLYSISL DVFLVLF+LPLGILLPFPAGINALFSHGPRRS GLARVYA
Sbjct: 1292 LADISLVLLTLLQLYSISLADVFLVLFVLPLGILLPFPAGINALFSHGPRRSAGLARVYA 1351

Query: 1020 LWNVTSLINVGVAFLCGYVHYSSGSSPNKKVPNFQPWNFSMDESEWWIFPAGLVLCKIFQ 1079
            LWN+TSLINV VAF+CGYVHY++  SP+KK+PNFQPWN +MD+SEWWI P GLV+CK  Q
Sbjct: 1352 LWNITSLINVMVAFICGYVHYNT-QSPSKKLPNFQPWNINMDDSEWWIIPTGLVVCKFIQ 1410

Query: 1080 SQLVNWHVANLEIQDRTLYSNDFELFWQS 1108
            S+L+NWH+ANLEIQDR+LYSNDFELFWQS
Sbjct: 1411 SRLINWHIANLEIQDRSLYSNDFELFWQS 1439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475929\|ref\|XP_002278525.2\| PREDICTED: uncharacterized protein LOC100243932 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550884\|ref\|XP_002516490.1\| conserved hypothetical protein [Ricinus communis] gi\|223544310\|gb\|EEF45831.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224088972\|ref\|XP_002308587.1\| predicted protein [Populus trichocarpa] gi\|222854563\|gb\|EEE92110.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224141605\|ref\|XP_002324157.1\| predicted protein [Populus trichocarpa] gi\|222865591\|gb\|EEF02722.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356510059\|ref\|XP_003523758.1\| PREDICTED: uncharacterized protein LOC100783686 [Glycine max]	Back alignment and taxonomy information

>gi\|449461397\|ref\|XP_004148428.1\| PREDICTED: uncharacterized protein LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356515645\|ref\|XP_003526509.1\| PREDICTED: uncharacterized protein LOC100804207 [Glycine max]	Back alignment and taxonomy information

>gi\|334187625\|ref\|NP_001154709.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332004329\|gb\|AED91712.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449507269\|ref\|XP_004162983.1\| PREDICTED: uncharacterized LOC101205923 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1108
TAIR\|locus:2123762		1432	AT4G32920 "AT4G32920" [Arabido	0.842	0.651	0.605	0.0

TAIR\|locus:2123762 AT4G32920 "AT4G32920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2997 (1060.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 574/948 (60%), Positives = 684/948 (72%)

Query:     2 STDTETLLLEFPNQPLWTNVYVQNCARATVPLLWSRVQVQGQISLSCGGVLSFGLAHYAT 61
             +T T+TLLLEFPN  L+TN+Y++N A+  VPL WSRVQVQG ISLS GG L+FGL  YA+
Sbjct:   342 TTYTDTLLLEFPNHRLFTNLYIRNMAKVAVPLRWSRVQVQGLISLSNGGELNFGLPRYAS 401

Query:    62 SEFELLAEELLMSDSVIKVYGALRMTVKIFLMWNSEMLVDGGGDATVATSLLEASNLIVL 121
             SEFEL AEELLMS+S IKVYGALRMTVK+FLM  S M +DGGG   + TS+LE SNL+VL
Sbjct:   402 SEFELFAEELLMSNSAIKVYGALRMTVKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVL 461

Query:   122 KEFSIIHSNANLEVHGQGLLNLSGPGDRIEAQRLVLALFYSIHVGPGSVLRSPLENATTD 181
             KE S+I SN NL VHGQGLLNL+G GD IEAQRL+L+LFYSI VG G+VLR PL+NA+T 
Sbjct:   462 KESSVIQSNGNLGVHGQGLLNLTGTGDTIEAQRLILSLFYSIQVGAGAVLRGPLQNASTG 521

Query:   182 AVTPRLYCEIQDCPVELLHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGSVVHFHRART 241
              +TP+LYC+ QDCPVELLHPPEDCNVNSSL FTLQICRVEDI V+GL++GSV+ FH ART
Sbjct:   522 GLTPKLYCQRQDCPVELLHPPEDCNVNSSLPFTLQICRVEDITVEGLIKGSVIQFHLART 581

Query:   242 ISVQSSGAISASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCFNDSCVEGGISYGNAN 301
             + V+SSG ISA                                C+N +C+EGG SYGNA+
Sbjct:   582 VLVRSSGTISADGMGCKGGVGTGRFLRSGIGSGGGHGGKGGSGCYNHTCIEGGESYGNAD 641

Query:   302 LPCELXXXXXXXXXXXXXXXXXIIVMGSFEHPLSSLSVEGSVKADGQSFEDLSTKKNYVV 361
             LPCEL                 IIV+GS EHPLSSLS+EGS+  DG+S      +K    
Sbjct:   642 LPCELGSGSGNEESTDSVAGGGIIVLGSLEHPLSSLSLEGSITTDGES-----PRKTLKG 696

Query:   362 RNXXXXXXXXXXXXTILLFLHTLDIGDSAVLSSVXXXXXXXXXXXXXXXRIHFHWSDIPT 421
              +            T+LLFL TL+IG SA+LSS+               RIHFHWSDIPT
Sbjct:   697 LSNSSLGPGGGSGGTVLLFLRTLEIGRSAILSSIGGNGSLKGGGGGSGGRIHFHWSDIPT 756

Query:   422 GDVYQPIASVRGSIRIXXXXXXXXXXXXXXXXXXXKACPKGLYGIFCEECPVGTYKNVTG 481
             GDVY P+A V+G + +                   KACP+GLYG+FCEECP GTYKNVTG
Sbjct:   757 GDVYHPVAIVKGRVYVRGGMGIIEDNIGGNGTLTGKACPEGLYGLFCEECPSGTYKNVTG 816

Query:   482 SDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHMPHCYTALEELIYTFGGP 541
             SDK+LCH CP  + PHRAVY++VRGG+AETPCPY+CIS+RYHMPHCYT LEELIYTFGGP
Sbjct:   817 SDKALCHLCPANDIPHRAVYVTVRGGVAETPCPYKCISDRYHMPHCYTTLEELIYTFGGP 876

Query:   542 WXXXXXXXXXXXXXXXXXXXARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETN 601
             W                   ARMKFV  DEL G APTQHGSQIDHSFPFLESLNEV+ET+
Sbjct:   877 WLFGVLLVVVLLLLALVFSVARMKFVSGDELHGSAPTQHGSQIDHSFPFLESLNEVMETS 936

Query:   602 RAEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWE 661
             R EES  H+HR+YF+GPNTFS+PWHL HTPPE+IKEIVYE AFN FVDE+N IA Y WWE
Sbjct:   937 RVEESQGHMHRIYFLGPNTFSEPWHLSHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWE 996

Query:   662 GAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEYDHACLRSCRSRALYEGLKVAAT 721
             GAIY +L++L YPLAWSWQQ RRR+K Q+LR++VRSEYDH+CLRSCRSRALYEGLKVAAT
Sbjct:   997 GAIYIMLSVLVYPLAWSWQQSRRRLKFQKLRDFVRSEYDHSCLRSCRSRALYEGLKVAAT 1056

Query:   722 PDLMLAYLDFFLGGDEKRTDLPPCLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQL 781
             PDLMLA+LDFFLGGDEKR+DLPP +H R PM LIFGGDGSYMA +SLQ+D+ILTSL+SQL
Sbjct:  1057 PDLMLAHLDFFLGGDEKRSDLPPQVHQRLPMPLIFGGDGSYMAYYSLQSDDILTSLLSQL 1116

Query:   782 VPPTICYRLVAGLNAQLRLVRRGRLRATFRPVLRWLETHANPTLQLHGLRVDLAWFQATA 841
             VPPT  YR VAGLNAQLRLV++G+LR+TFR V+RW+ETH NP L+ HG+RVDLA FQA +
Sbjct:  1117 VPPTTWYRFVAGLNAQLRLVQQGKLRSTFRSVMRWIETHGNPALKRHGVRVDLARFQALS 1176

Query:   842 CGYCQYGLLVYAVGGENEPTSIGSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQR 901
                CQYG+LV+ +   +E  S  S D       +       +EN SG  RE     +  R
Sbjct:  1177 SSSCQYGILVHTIA--DEVASTRSDDE----TEQQHPWGTQIENHSGDFRENF---QPLR 1227

Query:   902 SSESYMKRKRSHGGIIDTNNVQMLEERRDIFYFLSFIVHNTKPVGHQD 949
             S  ++++ +   G IID  ++Q L+E +D+   +SF++HNTKPVGHQD
Sbjct:  1228 SEINHVRHQEC-GEIIDIGSLQFLKEEKDVLSLISFLIHNTKPVGHQD 1274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1108
pfam07699		48	pfam07699, GCC2_GCC3, GCC2 and GCC3	6e-04

>gnl\|CDD\|219525 pfam07699, GCC2_GCC3, GCC2 and GCC3	Back alignment and domain information

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 468 CEECPVGTYKNVTGSDKSLCHQCPP 492
           CE CP GTY+   G D   C  CPP
Sbjct: 11  CEPCPRGTYQPEEGQDS--CIPCPP 33

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1108
KOG0196		996	consensus Tyrosine kinase, EPH (ephrin) receptor f	96.37
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	96.33
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	94.78
PF10256		118	Erf4: Golgin subfamily A member 7/ERF4 family; Int	92.98
cd00185		98	TNFR Tumor necrosis factor receptor (TNFR) domain;	92.96
PF07562		54	NCD3G: Nine Cysteines Domain of family 3 GPCR; Int	92.83
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	92.08
PHA02637		127	TNF-alpha-receptor-like protein; Provisional	88.82
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	87.04
PF07699		48	GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot	82.22

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]	Back alignment and domain information

Probab=96.37  E-value=0.0031  Score=77.75  Aligned_cols=54  Identities=39%  Similarity=0.883  Sum_probs=39.9

Q ss_pred             cCCCCCCC----cccceeCCCCccccccCCCCCCcccCCCCCCCCCceEEeecCCccCCCCCccccCCccc
Q 001282          457 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYH  523 (1108)
Q Consensus       457 k~CP~G~y----G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~ra~yiy~r~G~~~~~CpY~C~sdk~~  523 (1108)
                      =-|.+||.    |.-|+.||.||||...|  ...|.+||.+...+       ..  ..++|.  |..++|+
T Consensus       261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyR  318 (996)
T KOG0196|consen  261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYR  318 (996)
T ss_pred             eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCccc
Confidence            46899983    77799999999999764  57899999754221       11  246775  8888775

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4	Back alignment and domain information

>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains	Back alignment and domain information

>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>PHA02637 TNF-alpha-receptor-like protein; Provisional	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1108
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 59.9 bits (144), Expect = 4e-09
 Identities = 98/616 (15%), Positives = 182/616 (29%), Gaps = 186/616 (30%)

Query: 460  PKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 519
             + +   F EE     YK +    K+   Q  P       +YI  R  +      +    
Sbjct: 75   QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PS--MMTRMYIEQRDRLYNDNQVFA--- 127

Query: 520  ERYHMP--HCYTALEELIYTFGGPWLFCLLLVGLLILLALVLSVARMKFVGVDELPGPAP 577
             +Y++     Y  L +                      AL L +   K V +D + G   
Sbjct: 128  -KYNVSRLQPYLKLRQ----------------------AL-LELRPAKNVLIDGVLG--- 160

Query: 578  TQHGSQIDHSFPFLESLNEVLETNRAEESHSHVHRMYFMGPNTFSQPW------HLPHTP 631
               G            +   L+      S+    +M F     F   W      + P T 
Sbjct: 161  --SGKT---------WV--ALDVCL---SYKVQCKMDF---KIF---WLNLKNCNSPETV 198

Query: 632  PEQIKEIVY--EGAFNSFVD-EINAIATYHWWEGAIYSILAILAYPLA-------WSWQQ 681
             E +++++Y  +  + S  D   N     H  +  +  +L    Y           + + 
Sbjct: 199  LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 682  WRRRMKLQRLREYVRSEYDHAC--LRSCRSRALYEGLKVAA-------------TPDLML 726
            W                ++ +C  L + R + + + L  A              TPD + 
Sbjct: 259  WN--------------AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 727  AYLDFFLGGDEKRTDLPP--CLHHRFPMSLIFGGDGSYMAPFSLQNDNILTSLMSQLVPP 784
            + L  +L    +  DLP      +   +S+I       +       DN       +L   
Sbjct: 305  SLLLKYLDCRPQ--DLPREVLTTNPRRLSII----AESIRDGLATWDNWKHVNCDKLT-- 356

Query: 785  TICYRLVAGLNAQLRLVRRGRLR--ATFRPVLRWLETHAN-PTLQLHGLRVDLAWFQATA 841
            TI   + + LN       R      + F P        A+ PT+ L  +     WF    
Sbjct: 357  TI---IESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSLI-----WFDVI- 400

Query: 842  CGYCQYGLLVYAVGGENEPTSI-GSFDRGRLIERESRVKSIDMENPSGRLREETLLTRAQ 900
                           +++   +     +  L+E+         +  +  +    L  + +
Sbjct: 401  ---------------KSDVMVVVNKLHKYSLVEK-------QPKESTISIPSIYLELKVK 438

Query: 901  RSSESYMKRKRSHGGIIDTNNVQMLEERRDIF------YFLSFIVHNTKPVGHQDLVGLV 954
              +E  +     H  I+D  N+    +  D+       YF S I H+ K + H + + L 
Sbjct: 439  LENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 955  ISVLLLGDFS-----LVLLTLLQLYSISLVDVFLVL-----FILP--------LGILLPF 996
              V L  DF      +   +     S S+++    L     +I          +  +L F
Sbjct: 494  RMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 997  PAGINALFSHGPRRSV 1012
               I           +
Sbjct: 552  LPKIEENLICSKYTDL 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1108
1jma_B		167	Herpesvirus entry mediator; V-type IG molecule and	93.79
3fl7_A		536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	93.76
2uwi_A		142	CRME protein; receptor, poxvirus TNF receptor, rec	92.5
1du3_A		130	Death receptor 5; trail, DR5, complex; 2.20A {Homo	91.98
2hey_R		146	Tumor necrosis factor receptor superfamily member;	91.79
3me4_A		216	Tumor necrosis factor receptor superfamily member;	91.12
3alq_R		173	Tumor necrosis factor receptor superfamily member;	90.73
4fhq_A		134	Tumor necrosis factor receptor superfamily member;	89.68
3u3p_A		313	Tumor necrosis factor receptor superfamily member;	89.64
1sg1_X		161	Tumor necrosis factor receptor superfamily member	89.24
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	89.11
2e4u_A		555	Metabotropic glutamate receptor 3; G-protein-coupl	87.64
3tje_F		156	Tumor necrosis factor receptor superfamily member;	86.46
1sg1_X		161	Tumor necrosis factor receptor superfamily member	85.71
3tje_F		156	Tumor necrosis factor receptor superfamily member;	84.57
1ext_A		162	Tumor necrosis factor receptor; binding protein, c	84.23
3urf_Z		171	Tumor necrosis factor receptor superfamily member;	84.08
3alq_R		173	Tumor necrosis factor receptor superfamily member;	83.34
3qd6_R		177	CD40L receptor, tumor necrosis factor receptor sup	82.21
2odl_A		373	Adhesin; HMW1, secretion domain, beta helix, cell	82.06
2hey_R		146	Tumor necrosis factor receptor superfamily member;	81.78
3k51_B		176	Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity,	81.46
3me4_A		216	Tumor necrosis factor receptor superfamily member;	80.61
1ext_A		162	Tumor necrosis factor receptor; binding protein, c	80.59

>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*	Back alignment and structure

Probab=93.79  E-value=0.04  Score=55.39  Aligned_cols=64  Identities=27%  Similarity=0.524  Sum_probs=40.6

Q ss_pred             EccCCCCCCC---------cccceeCCCCccccccCCCCCCcccCCCCCCCCC-ceEEeecCC-ccCCCCCccccCCccc
Q 001282          455 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVRGG-IAETPCPYRCISERYH  523 (1108)
Q Consensus       455 ~gk~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C~pCp~~~~P~r-a~yiy~r~G-~~~~~CpY~C~sdk~~  523 (1108)
                      -=+.||+|+|         ...|++||.|+|+...+. ...|.+|+.  .+.. ..++..... ...+.|  .|.+++|.
T Consensus        15 ~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~   89 (167)
T 1jma_B           15 CCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHFC   89 (167)
T ss_dssp             CCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred             CCCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCc-CccccCCcc--cccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence            3466777764         467999999999986432 356888874  3322 233322222 235678  89888884

PyMOL of 1jma

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*	Back alignment and structure

>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}	Back alignment and structure

>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*	Back alignment and structure

>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X	Back alignment and structure

>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*	Back alignment and structure

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R	Back alignment and structure

>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R	Back alignment and structure

>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}	Back alignment and structure

>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}	Back alignment and structure

>2odl_A Adhesin; HMW1, secretion domain, beta helix, cell adhesion; 1.92A {Haemophilus influenzae}	Back alignment and structure

>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R	Back alignment and structure

>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D	Back alignment and structure

>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B	Back alignment and structure

>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1108
d1jmab1		56	g.24.1.1 (B:4-59) Cellular receptor HveA {Human (H	0.002
d2heyr3		54	g.24.1.1 (R:29-82) Tumor necrosis factor receptor	0.002

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Length = 56	Back information, alignment and structure


class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 459 CPKGLY---GIFCEECPVGTY--KNVTGSDKSLCHQCPPQEF 495
           C +  Y      C +C  G    +       ++C  CPP  +
Sbjct: 1   CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGTY 42

PyMOL of d1jmab1

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 54	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1108
d1sg1x3		42	Low affinity neurotrophin receptor p75NTR {Rat (Ra	95.81
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	93.34
d1exta1		59	Tumor necrosis factor (TNF) receptor {Human (Homo	92.24
d1jmab1		56	Cellular receptor HveA {Human (Homo sapiens) [TaxI	91.37
d2heyr3		54	Tumor necrosis factor receptor superfamily member	89.84
d1kloa1		55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	89.52
d2heyr3		54	Tumor necrosis factor receptor superfamily member	87.21

>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.81  E-value=0.0014  Score=51.27  Aligned_cols=30  Identities=37%  Similarity=0.811  Sum_probs=24.3

Q ss_pred             cCCCCCCC---------cccceeCCCCccccccCCCCCCc
Q 001282          457 KACPKGLY---------GIFCEECPVGTYKNVTGSDKSLC  487 (1108)
Q Consensus       457 k~CP~G~y---------G~fC~eCP~GtYK~~tGS~~~~C  487 (1108)
                      +.||+|++         ...|++||.|||.+++ |+...|
T Consensus         3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C   41 (42)
T d1sg1x3           3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC   41 (42)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred             ccCCCCcCeeecCcCCCCceeeECcCCcccCcC-CCcCcc
Confidence            57999984         7789999999999976 445556

PyMOL of d1sg1x3

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure