Citrus Sinensis ID: 001312

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100--
MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENSDIESEKDDTDEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQGSSVVDPKVEREKERGKDASSQPESIVRKTKIEGGKISRGQKGKLKKMKEKYGDQDEEERNIRMALLASAGKVQKNDGDPQNENASTHKEKKPAISPVDAPKVCYKCKKAGHLSKDCKEHPDDSSHGVEDNPCVGLDETAEMDKVAMEEEDIHEIGEEEKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCNEFI
cccccccHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccEEEEccccccccccccHHHHHHHHHHccccEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccEEEEcccccEEEEcccccccccccEEccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccEEEEEEcccHHHHHHHHHHcccccEEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccEEEEEEEEcccHHHHHccEEEEEEEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccc
cccHHccHHHHHHHHHHHHHHHcccHHEEEcccccEEEEEEEcccccccccccccEEEEEEccEEEEEccccccccccccHHHHHHHHHHHcccEHEEHHccccEEEEEEEcccccEEEEEEEEEccccEEEEccccEEEEEEEccccccccEEEEEEEEccHHHccccccccHHHHHHHHHHHHcccccccHHHHHHcccccHHcHHHHHHHHHHccHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccccccEEHccccccHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHccccccccEEEEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHHHHEEEEEccccEEEEEcccHHHHHHHHHHHcccccEEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHEHHHHHcccEEEEEEEcccccccccccccEccccEEEEEccccccccccEEEEEEEEEEcccHccccccccEEEccccccccccccccHHHHHHHHccccccccccccHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHccccHHcccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHcccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEcccccEccccccccccc
MVKVRMNTADVAAEVKCLRRLIGmrcsnvydlspkTYIFKLMnssgvtesgeSEKVLLLMESGVRLHTTAyardkkntpsgfTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQgnilltdseFTVLTLLRShrdddkgvaimsrhrypTEICRVFERTTASKLHAALtsskepdanepdkvnedgnnvsnaskenlggqkggksfdlsknsnknsndgarakqptlKTVLGEalgygpalsehiildtglvpnmklsevnkleDNAIQVLVLAVAKFEDWLQdvisgdivpegYILMqnkhlgkdhpptesgsstqiydEFCPLLLNqfrsrefvkfeTFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEErkagnpvaglIDKLYLERNCMSLLlsnnldemddeektlpveKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLhgasstviknhrpeqpvppltlnqagcftvchsqawdskmvtsawwvyphqvsktaptgeyltvgsfmirgkknflpphplimgFGLLfrldesslgshlnerrvrgeeegmddfedsghhkensdiesekddtdekpvaeslsvpnsahpapshtnasnvdshefpaedktisngidskIFDIarnvaapvtpqLEDLIDRALglgsasisstkhgiettqfdlseedkhvertatvrdkpyiskaerrklkkgqgssvvdpkverekergkdassqpesIVRKTkieggkisrgqkgKLKKMKEKYGDQDEEERNIRMALLASAGkvqkndgdpqnenasthkekkpaispvdapkvcykckkaghlskdckehpddsshgvednpcvgldetaemdkVAMEEEDIHEIgeeekgrlndvdyltgnplpsdillyvipvcgpysavqsykyrvkiipgtakkgkGIQIFYSLLLLMLsltpvfdifpfqclcsrkdcnefi
mvkvrmntadvaaEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTtayardkkntpsgftlklrkhirtrrledvrqLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRshrdddkgvaimsrhrypteICRVFERTTASKLHAaltsskepdanepdkvnedgnnvsnaskenlggqkggksfdlSKNSnknsndgarakqptLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKeerkagnpvaglidklYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYElkkkqeskqektITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNerrvrgeeegmddfedsghhkensdiesekddtdEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGLGsasisstkhgiettqfdlseedkhvertatvrdkpyiskaerrklkkgqgssvvdpkverekergkdassqpesivrktkieggkisrgqkgklkkmkekygdqdeeERNIRMALLASagkvqkndgdpqnenasthkekkpaispvdapKVCYKCKKAGHLSKDCkehpddsshgvednpcvgLDETAEMDKVAMEEEDIHeigeeekgrlndVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCNEFI
MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLsknsnknsnDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYELkkkqeskqekTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENSDIESEKDDTDEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQGSSVVDPKVEREKERGKDASSQPESIVRKTKIEGGKISRGQkgklkkmkekYGDQDEEERNIRMALLASAGKVQKNDGDPQNENASTHKEKKPAISPVDAPKVCYKCKKAGHLSKDCKEHPDDSSHGVEDNPCVGLDETAEMDKVAMeeediheigeeeKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYsllllmlslTPVFDIFPFQCLCSRKDCNEFI
********ADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNS**********KVLLLMESGVRLHTTAYARD***TPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTT*******************************************************************KTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQN****************QIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSK*************************************EVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNL***********VEKVEVDLALSAHANARRWYE***************************RLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIK********PPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLD************************************************************************************IDSKIFDIARNVAAPVTPQLEDLIDRALGLG*******************************************************************************************************************************************************VCYKCK******************************************************LNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKD*****
**KVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRD*****AI*SRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDL*********DGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKH**********GSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIE********************************LKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDE************VEVDLALSAHANARRWYELKKKQ**********************************************FNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQ**********LTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLG*********************************************************************************************************************************************************************************************************************************************************************************************************************************LNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCNE**
MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKL*****************VNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHL************TQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIE************DAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYEL************************KTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEE******************************************************EFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAE********************************SIVRKTKIEGGKIS********************ERNIRMALLASAGK***********************SPVDAPKVCYKCKKAG*****************EDNPCVGLDETAEMDKVAMEEEDIHEIGEEEKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCNEFI
*****MNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVT***ESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKH***********SSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNN*****DEEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRG**********************************************************************************************************************************************************************************************KGKLKKMKEKYGDQDEEERNIRMALLASAG************************************************H*****************************E**HEIGEEEKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCN*FI
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MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHKENSDIESEKDDTDEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQGSSVVDPKVEREKERGKDASSQPESIVRKTKIEGGKISRGQKGKLKKMKEKYGDQDEEERNIRMALLASAGKVQKNDGDPQNENASTHKEKKPAISPVDAPKVCYKCKKAGHLSKDCKEHPDDSSHGVEDNPCVGLDETAEMDKVAMEEEDIHEIGEEEKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCSRKDCNEFI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1102 2.2.26 [Sep-21-2011]
Q8CCP01064 Nuclear export mediator f yes no 0.585 0.606 0.416 1e-154
Q9VBX1992 Nuclear export mediator f yes no 0.824 0.916 0.361 1e-151
O605241076 Nuclear export mediator f yes no 0.423 0.434 0.457 1e-120
Q9USN81021 Uncharacterized protein C yes no 0.598 0.645 0.338 1e-101
Q125321038 Translation-associated el yes no 0.574 0.609 0.276 3e-56
Q59020671 Uncharacterized protein M yes no 0.312 0.512 0.290 3e-33
>sp|Q8CCP0|NEMF_MOUSE Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2 Back     alignment and function desciption
 Score =  546 bits (1406), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 310/745 (41%), Positives = 431/745 (57%), Gaps = 100/745 (13%)

Query: 2   VKVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLM 60
           +K R +T D+ A +  L   L+GMR +NVYD+  KTY+ +L             K  LL+
Sbjct: 1   MKSRFSTVDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDF--------KATLLL 52

Query: 61  ESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYV 120
           ESG+R+HTT +   K   PS F +K RKH+++RRL   +QLG DRI+ FQFG    A+++
Sbjct: 53  ESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHL 112

Query: 121 ILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAA 180
           I+ELY +GNI+LTD E+ +L +LR   D+   V    R RYP +  R             
Sbjct: 113 IIELYDRGNIVLTDYEYLILNILRFRTDEADDVKFAVRERYPIDHAR------------- 159

Query: 181 LTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTL 240
                   A EP    E    V  A+                             K   L
Sbjct: 160 --------AAEPLLTLERLTEVIAAA----------------------------PKGEVL 183

Query: 241 KTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVIS 300
           K VL   L YGPAL EH ++++G   N K+ E  KLE   I+ +++ V + ED+L+   +
Sbjct: 184 KRVLNPLLPYGPALIEHCLIESGFSGNAKVDE--KLESKDIEKILVCVQRAEDYLRK--T 239

Query: 301 GDIVPEGYILMQNK---HLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAA 357
            +   +GYI+ + +    L  D P          Y+EF P L +Q     +++FE+FD A
Sbjct: 240 SNFNGKGYIIQKREAKPSLDADKP----AEDILTYEEFHPFLFSQHLQCPYIEFESFDKA 295

Query: 358 LDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNL 417
           +DEFYSKIE Q+ + +   +E  A  KL+ +  D ENR+  L+Q  +      ELIE NL
Sbjct: 296 VDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNL 355

Query: 418 EDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNN-- 475
           + VD AI  VR ALAN++ W ++  +VKE +  G+PVA  I +L L+ N +++LL N   
Sbjct: 356 QIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLLRNPYL 415

Query: 476 LDEMDDEEKTLPVEK----------------------------VEVDLALSAHANARRWY 507
           L E +D +    +E                             V+VDL+LSA+ANA+++Y
Sbjct: 416 LSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYY 475

Query: 508 ELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISSE 567
           + K+    K ++T+ A  KAFK+AEKKT+  + + +TV +I   RKV+WFEKF WFISSE
Sbjct: 476 DHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSE 535

Query: 568 NYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCF 627
           NYL+I GRD QQNE+IVKRY++ GD+YVHADLHGA+S VIKN   E P+PP TL +AG  
Sbjct: 536 NYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGE-PIPPRTLTEAGTM 594

Query: 628 TVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLL 687
            +C+S AWD++++TSAWWVY HQVSKTAPTGEYLT GSFMIRGKKNFLPP  L+MGF  L
Sbjct: 595 ALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFL 654

Query: 688 FRLDESSLGSHLNERRVRGEEEGMD 712
           F++DES +  H  ER+VR ++E M+
Sbjct: 655 FKVDESCVWRHRGERKVRVQDEDME 679
Plays a role in nuclear export.
Mus musculus (taxid: 10090)
>sp|Q9VBX1|NEMF_DROME Nuclear export mediator factor NEMF homolog OS=Drosophila melanogaster GN=Clbn PE=1 SV=2 Back     alignment and function description
>sp|O60524|NEMF_HUMAN Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4 Back     alignment and function description
>sp|Q9USN8|YJY1_SCHPO Uncharacterized protein C132.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC132.01c PE=1 SV=2 Back     alignment and function description
>sp|Q12532|TAE2_YEAST Translation-associated element 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAE2 PE=1 SV=1 Back     alignment and function description
>sp|Q59020|Y1625_METJA Uncharacterized protein MJ1625 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1625 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1102
2254320641110 PREDICTED: nuclear export mediator facto 0.934 0.927 0.758 0.0
2555564941092 conserved hypothetical protein [Ricinus 0.913 0.922 0.732 0.0
4494850091090 PREDICTED: nuclear export mediator facto 0.966 0.977 0.712 0.0
4494415221119 PREDICTED: nuclear export mediator facto 0.960 0.946 0.715 0.0
3574487631146 Serologically defined colon cancer antig 0.962 0.925 0.697 0.0
3565290761131 PREDICTED: nuclear export mediator facto 0.952 0.928 0.698 0.0
2977957611080 EMB1441 [Arabidopsis lyrata subsp. lyrat 0.928 0.947 0.687 0.0
152405821080 zinc knuckle (CCHC-type) family protein 0.924 0.943 0.683 0.0
3565581071119 PREDICTED: nuclear export mediator facto 0.923 0.909 0.715 0.0
1154891101159 Os12g0564600 [Oryza sativa Japonica Grou 0.967 0.919 0.642 0.0
>gi|225432064|ref|XP_002273922.1| PREDICTED: nuclear export mediator factor Nemf-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1615 bits (4182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1068 (75%), Positives = 900/1068 (84%), Gaps = 38/1068 (3%)

Query: 1    MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLM 60
            MVKVRMNTADVAAE+KCLRRLIGMRC+NVYDLSPKTY+FKLMNSSGVTESGESEKVLLLM
Sbjct: 1    MVKVRMNTADVAAEIKCLRRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLM 60

Query: 61   ESGVRLHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYV 120
            ESGVRLHTTAY RDK  TPSGFTLKLRKHIRTRRLEDVRQLGYDR++LFQFGLG NAHYV
Sbjct: 61   ESGVRLHTTAYVRDKSMTPSGFTLKLRKHIRTRRLEDVRQLGYDRVVLFQFGLGANAHYV 120

Query: 121  ILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTASKLHAA 180
            ILELYAQGNILLTDSEF V+TLLRSHRDDDKGVAIMSRHRYP EICRVFERT  +KL AA
Sbjct: 121  ILELYAQGNILLTDSEFMVMTLLRSHRDDDKGVAIMSRHRYPVEICRVFERTATTKLQAA 180

Query: 181  LTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTL 240
            LTS KE ++NE  + +E GN VS+A +E  G  KG KS + SKN+N    DGARAKQ TL
Sbjct: 181  LTSPKESESNEAVEASEGGNKVSDAPREKQGNNKGVKSSEPSKNTN----DGARAKQATL 236

Query: 241  KTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVIS 300
            KTVLGEALGYGPALSEHIILD GL+PN K+++ +K + + IQ L  +V KFE+WL+DVIS
Sbjct: 237  KTVLGEALGYGPALSEHIILDAGLIPNTKVTKDSKFDIDTIQRLAQSVTKFENWLEDVIS 296

Query: 301  GDIVPEGYILMQNKHLGKDHPPTESGSSTQ-IYDEFCPLLLNQFRSREFVKFETFDAALD 359
            GD VPEGYILMQNK  GKD PP++    +Q IYDEFCP+LLNQF+SREFVKFETFDAALD
Sbjct: 297  GDQVPEGYILMQNKIFGKDCPPSQPDRGSQVIYDEFCPILLNQFKSREFVKFETFDAALD 356

Query: 360  EFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELIEYNLED 419
            EFYSKIESQR+EQQ KAKE +A  KL KI +DQENRVHTLK+EVD  +KMAELIEYNLED
Sbjct: 357  EFYSKIESQRSEQQQKAKEGSAMQKLTKIRVDQENRVHTLKKEVDHCIKMAELIEYNLED 416

Query: 420  VDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEM 479
            VDAAILAVRVALAN M+WEDLARMVKEE+K+GNPVAGLIDKLYLERNCM+LLLSNNLDEM
Sbjct: 417  VDAAILAVRVALANGMNWEDLARMVKEEKKSGNPVAGLIDKLYLERNCMTLLLSNNLDEM 476

Query: 480  DDEEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQI 539
            DD+EKTLPV+KVEVDLALSAHANARRWYE KK+QE+KQEKT+ AH KAFKAAEKKTRLQ+
Sbjct: 477  DDDEKTLPVDKVEVDLALSAHANARRWYEQKKRQENKQEKTVIAHEKAFKAAEKKTRLQL 536

Query: 540  LQEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADL 599
             QEKTVA ISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGD+Y+HADL
Sbjct: 537  SQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYIHADL 596

Query: 600  HGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGE 659
            HGASSTVIKNH+PE PVPPLTLNQAGCFTVCHSQAWDSK+VTSAWWVYPHQVSKTAPTGE
Sbjct: 597  HGASSTVIKNHKPEHPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGE 656

Query: 660  YLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGH 719
            YLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEG  DFE++  
Sbjct: 657  YLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGAQDFEENES 716

Query: 720  HKENSDIESEKDDTDEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSK 779
             K NSD ESEK++TDEK  AES                      + P E++ + NG DS+
Sbjct: 717  LKGNSDSESEKEETDEKRTAES----------------------KIPLEERNMLNGNDSE 754

Query: 780  -IFDIARNVAAPVTPQLEDLIDRALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVR 838
             I DI+    + V PQLEDLIDRAL LGS + S  K+ +ET+Q DL EE  H +R ATVR
Sbjct: 755  HIADISGGHVSSVNPQLEDLIDRALELGSNTASGKKYALETSQVDL-EEHNHEDRKATVR 813

Query: 839  DKPYISKAERRKLKKGQGSSVVDP---KVEREKERGKDASSQPESIVRKTKIEGGKISRG 895
            +KPYISKAERRKLKKGQ +S  D      + E E    ++SQP+  V+ ++  GGKISRG
Sbjct: 814  EKPYISKAERRKLKKGQKTSTSDAGGDHGQEEIEENNVSTSQPDKDVKNSQPAGGKISRG 873

Query: 896  QKGKLKKMKEKYGDQDEEERNIRMALLASAGKVQKNDGDPQNENASTHKEKKPAISPVDA 955
            QKGKLKKMKEKY DQDEEER+IRMALLASAG+  K D + +NENA T K  KP   P +A
Sbjct: 874  QKGKLKKMKEKYADQDEEERSIRMALLASAGRAHKIDKEKENENADTGKGMKPVNGPEEA 933

Query: 956  PKVCYKCKKAGHLSKDCKEHPDDSSH----GVEDNPCVGLDETA-EMDKVAMEEEDIHEI 1010
            PK+CYKCKK GHLS+DC EHPD + H    GVED   V LD +A EMD+VAMEE+DIHEI
Sbjct: 934  PKICYKCKKVGHLSRDCPEHPDGTIHSHSNGVEDRR-VDLDNSATEMDRVAMEEDDIHEI 992

Query: 1011 GEEEKGRLNDVDYLTGNPLPSDILLYVIPVCGPYSAVQSYKYRVKIIP 1058
            GEEEKG+LNDVDYLTGNPLP+DILLY +PVCGPYSA+Q+YKYRVKIIP
Sbjct: 993  GEEEKGKLNDVDYLTGNPLPNDILLYAVPVCGPYSALQTYKYRVKIIP 1040

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556494|ref|XP_002519281.1| conserved hypothetical protein [Ricinus communis] gi|223541596|gb|EEF43145.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449485009|ref|XP_004157045.1| PREDICTED: nuclear export mediator factor NEMF homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441522|ref|XP_004138531.1| PREDICTED: nuclear export mediator factor Nemf-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357448763|ref|XP_003594657.1| Serologically defined colon cancer antigen-like protein [Medicago truncatula] gi|355483705|gb|AES64908.1| Serologically defined colon cancer antigen-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356529076|ref|XP_003533123.1| PREDICTED: nuclear export mediator factor Nemf-like [Glycine max] Back     alignment and taxonomy information
>gi|297795761|ref|XP_002865765.1| EMB1441 [Arabidopsis lyrata subsp. lyrata] gi|297311600|gb|EFH42024.1| EMB1441 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240582|ref|NP_199804.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] gi|8777424|dbj|BAA97014.1| unnamed protein product [Arabidopsis thaliana] gi|332008489|gb|AED95872.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356558107|ref|XP_003547349.1| PREDICTED: nuclear export mediator factor NEMF homolog [Glycine max] Back     alignment and taxonomy information
>gi|115489110|ref|NP_001067042.1| Os12g0564600 [Oryza sativa Japonica Group] gi|108862839|gb|ABA98970.2| zinc knuckle family protein, putative, expressed [Oryza sativa Japonica Group] gi|113649549|dbj|BAF30061.1| Os12g0564600 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1102
TAIR|locus:21588441080 emb1441 "embryo defective 1441 0.689 0.703 0.64 0.0
UNIPROTKB|F1SHY21078 NEMF "Uncharacterized protein" 0.504 0.515 0.381 2.5e-167
UNIPROTKB|F1N8T01071 NEMF "Uncharacterized protein" 0.512 0.527 0.379 5.2e-167
UNIPROTKB|F1MKA11079 NEMF "Uncharacterized protein" 0.505 0.516 0.386 1.4e-166
UNIPROTKB|O605241076 NEMF "Nuclear export mediator 0.508 0.520 0.370 4.6e-166
DICTYBASE|DDB_G0289583 1268 DDB_G0289583 "DUF814 family pr 0.430 0.373 0.376 4.4e-160
MGI|MGI:19183051064 Nemf "nuclear export mediator 0.418 0.433 0.390 2.9e-156
UNIPROTKB|G3V5V3999 NEMF "Nuclear export mediator 0.508 0.560 0.370 2.3e-153
FB|FBgn0259152992 Clbn "Caliban" [Drosophila mel 0.524 0.582 0.392 3e-146
ZFIN|ZDB-GENE-060929-284883 zgc:153813 "zgc:153813" [Danio 0.602 0.751 0.379 3.3e-145
TAIR|locus:2158844 emb1441 "embryo defective 1441" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2450 (867.5 bits), Expect = 0., Sum P(2) = 0.
 Identities = 512/800 (64%), Positives = 593/800 (74%)

Query:   207 KENLGGQKGGKSFDLXXXXXXXXXDGARAKQPTLKTVLGEALGYGPALSEHIILDTGLVP 266
             KE  GG+KGGKS            D   AKQ TLK +LG+ALGYGP LSEHIILD GLVP
Sbjct:   197 KEQNGGKKGGKS-----------NDSTGAKQYTLKNILGDALGYGPQLSEHIILDAGLVP 245

Query:   267 NMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHPPTESG 326
               KLSE  KL+DN IQ+LV AV  FEDWL+D+I+G  VPEGYILMQ + L  D   +ESG
Sbjct:   246 TTKLSEDKKLDDNEIQLLVQAVIVFEDWLEDIINGQKVPEGYILMQKQILAND-TTSESG 304

Query:   327 SSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLN 386
                ++YDEFC +LLNQF+SR + KFETFDAALDEFYSKIESQR+EQQ KAKED+A  KLN
Sbjct:   305 GVKKMYDEFCSILLNQFKSRVYEKFETFDAALDEFYSKIESQRSEQQQKAKEDSASLKLN 364

Query:   387 KIHMDQENRVHTLKQEVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKE 446
             KI  DQENRV  LK+EV+  V MAELIEYNLEDVDAAILAVRVALA  M W+DLARMVKE
Sbjct:   365 KIRQDQENRVQILKKEVNHCVNMAELIEYNLEDVDAAILAVRVALAKGMGWDDLARMVKE 424

Query:   447 ERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDDEEKTLPVEKVEVDLALSAHANARRW 506
             E+K GNPVAG+ID+LYLE+NCM+LLL NNLDEMDD+EKT+PVEKVEVDL+LSAH NARRW
Sbjct:   425 EKKLGNPVAGVIDRLYLEKNCMTLLLCNNLDEMDDDEKTVPVEKVEVDLSLSAHGNARRW 484

Query:   507 YELXXXXXXXXXXTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFNWFISS 566
             YE+          T++AH KAF+AAEKKTR Q+ QEK VA ISHMRKVHWFEKFNWFISS
Sbjct:   485 YEMKKKQETKQEKTVSAHEKAFRAAEKKTRHQLSQEKVVATISHMRKVHWFEKFNWFISS 544

Query:   567 ENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGC 626
             ENYLVISGRDAQQNEMIVKRYMSKGD+YVHA+LHGASSTVIKNH+PEQ VPPLTLNQAGC
Sbjct:   545 ENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPEQNVPPLTLNQAGC 604

Query:   627 FTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGL 686
             FTVCHSQAWDSK+VTSAWWVYPHQV+KTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGL
Sbjct:   605 FTVCHSQAWDSKIVTSAWWVYPHQVTKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGL 664

Query:   687 LFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHK-ENSDIESEKDDTDEKPVAESLSVP 745
             LFRLDESSLG+HLNERRVRGEEEGM+D     H   E+SD ESE +  +E  V+ S  V 
Sbjct:   665 LFRLDESSLGAHLNERRVRGEEEGMNDVVMETHAPDEHSDTESENEAVNEV-VSASGEVD 723

Query:   746 NSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDRALGL 805
                       + S++D           S+GI  +      NVA+  T QLEDL+DR LGL
Sbjct:   724 LQESSTALSQDTSSLDMS---------SSGITEE------NVAS-ATSQLEDLLDRTLGL 767

Query:   806 GSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQ-GSSVVDPKV 864
             G+A+++  K  IET++ D+ E+ K  E+ A VRDKPY+SKAERRKLK GQ G++  D   
Sbjct:   768 GAATVAGKKDTIETSKDDMEEKMKQEEKNAVVRDKPYMSKAERRKLKMGQSGNTAADGNT 827

Query:   865 EREKE--RGKDASS--QPESIVRKTKIEGGKISRGQXXXXXXXXXXYGDQDEEERNIRMA 920
              +EK+  + KD SS  Q    +   K  G K+SRGQ          Y DQDE+ER IRMA
Sbjct:   828 GQEKQQRKEKDVSSLSQATKSIPDNKPAGEKVSRGQRGKLKKMKEKYADQDEDERKIRMA 887

Query:   921 LLASAGKVQKNDGDPQNENASTHKEKKPAISPVDAPKVCYKCKKAGHLSKDC--KEHPDD 978
             LLAS+GK QK D + QN   +  + KKP+    DA K+CY+CKK GHL++DC  KE  D 
Sbjct:   888 LLASSGKPQKTDVESQNAKTAVTEVKKPSEETDDAVKICYRCKKVGHLARDCHGKETSDM 947

Query:   979 SSHGVEDNPC--VGLDETAE 996
                 +E++    VG DE  E
Sbjct:   948 DKVVMEEDDIHEVG-DEEKE 966
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
UNIPROTKB|F1SHY2 NEMF "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8T0 NEMF "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MKA1 NEMF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O60524 NEMF "Nuclear export mediator factor NEMF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289583 DDB_G0289583 "DUF814 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1918305 Nemf "nuclear export mediator factor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V5V3 NEMF "Nuclear export mediator factor NEMF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0259152 Clbn "Caliban" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-284 zgc:153813 "zgc:153813" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VBX1NEMF_DROMENo assigned EC number0.36170.82480.9163yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1102
COG1293564 COG1293, COG1293, Predicted RNA-binding protein ho 4e-70
pfam0567090 pfam05670, DUF814, Domain of unknown function (DUF 2e-28
pfam11923108 pfam11923, DUF3441, Domain of unknown function (DU 2e-20
pfam05833447 pfam05833, FbpA, Fibronectin-binding protein A N-t 6e-13
pfam05833447 pfam05833, FbpA, Fibronectin-binding protein A N-t 2e-05
pfam0009818 pfam00098, zf-CCHC, Zinc knuckle 1e-04
smart0034317 smart00343, ZnF_C2HC, zinc finger 3e-04
PTZ00368148 PTZ00368, PTZ00368, universal minicircle sequence 0.001
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information 
 Score =  244 bits (626), Expect = 4e-70
 Identities = 158/690 (22%), Positives = 263/690 (38%), Gaps = 143/690 (20%)

Query: 3   KVRMNTADVAAEVKCLR-RLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLME 61
           K++ ++ D+AA V+ L+ +L G R   +Y       I  L             + LLL E
Sbjct: 2   KMKFDSLDLAAIVEELKEQLEGGRIDKIYQPGEDELILLLRFGGK-------GRKLLLSE 54

Query: 62  SGVR--LHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHY 119
             VR  +H T   ++    PS F + LRKH++  R+E + QLG+DRI+  +F        
Sbjct: 55  HPVRSRIHLTKKPKENPALPSSFAMLLRKHLKGARIEKIEQLGFDRILELKFKKDEIGDK 114

Query: 120 VILELY-----AQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTA 174
           +I+EL+       GN++L D E  ++  LR     D+   I     Y             
Sbjct: 115 IIVELFLEIMGKHGNLILVDEERKIIEALRHVTFSDR--TIKPGEIY------------- 159

Query: 175 SKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGAR 234
                       P A   +   +   +       +                         
Sbjct: 160 ----------ILPPAQLKNPYEQSEEDFKELQLNSGA----------------------- 186

Query: 235 AKQPTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDW 294
                +  +L   LG G  L+E ++   GL   +   ++                 FE+ 
Sbjct: 187 ----DIVRLLARFLGLGGLLAEELLSRAGLDKKVPAKDL-----------------FEEE 225

Query: 295 LQDVISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFE-T 353
           ++ V          +     +  + +                   L+    + +   E  
Sbjct: 226 IKKVREALEELLNPLKPNYYYKDEKY-------------------LDVVPLKAYADLEKL 266

Query: 354 FDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQEVDRSVKMAELI 413
           F+ ALDE + + + ++   + + K +    KL      QE+ +  L++  +   +  EL+
Sbjct: 267 FNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELL 326

Query: 414 EYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLS 473
             NL+ ++  + +VR+A      +       +E +   +                S   S
Sbjct: 327 YANLQLIEEGLKSVRLA-----DFYG----NEEIKIELDK---------------SKTPS 362

Query: 474 NNLDEMDDEEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEK 533
            N      + K L   KV +D  LS    A  +YE  K    K E       KA +   +
Sbjct: 363 ENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEG-----KKAIEEIRE 417

Query: 534 KTRLQIL--QEKTVANISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKG 591
           +   + L   +K        +K  WFEKF WF+SS+ +LVI GR+A+QNE +VK+Y  K 
Sbjct: 418 ELIEEGLLKSKKKKR-----KKKEWFEKFRWFVSSDGFLVIGGRNAKQNEELVKKYAEKD 472

Query: 592 DVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVT-SAWWVYPHQ 650
           D++ HAD    S  VIK    E      T+ +A      +S+AW S +V     WV P Q
Sbjct: 473 DLWFHADDIPGSHVVIKTEGKE--PSEETILEAAQLAASYSKAWKSGLVPVDYTWVKPVQ 530

Query: 651 VSKTAPTGEYLTVGSFMIRGKKNFLPPHPL 680
           V K A +GE L  G   IRGK++++    L
Sbjct: 531 VPKGAKSGEVLYKGQKTIRGKRDYITIVKL 560

Length = 564
>gnl|CDD|218683 pfam05670, DUF814, Domain of unknown function (DUF814) Back     alignment and domain information
>gnl|CDD|221316 pfam11923, DUF3441, Domain of unknown function (DUF3441) Back     alignment and domain information
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA) Back     alignment and domain information
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA) Back     alignment and domain information
>gnl|CDD|189387 pfam00098, zf-CCHC, Zinc knuckle Back     alignment and domain information
>gnl|CDD|197667 smart00343, ZnF_C2HC, zinc finger Back     alignment and domain information
>gnl|CDD|173561 PTZ00368, PTZ00368, universal minicircle sequence binding protein (UMSBP); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1102
KOG2030911 consensus Predicted RNA-binding protein [General f 100.0
COG1293564 Predicted RNA-binding protein homologous to eukary 100.0
PF05833455 FbpA: Fibronectin-binding protein A N-terminus (Fb 100.0
PF11923112 DUF3441: Domain of unknown function (DUF3441); Int 99.96
PF0567090 DUF814: Domain of unknown function (DUF814); Inter 99.93
KOG2030 911 consensus Predicted RNA-binding protein [General f 98.49
KOG3272207 consensus Predicted coiled-coil protein [General f 97.32
COG1293564 Predicted RNA-binding protein homologous to eukary 97.28
PRK01103274 formamidopyrimidine/5-formyluracil/ 5-hydroxymethy 95.88
PRK10445263 endonuclease VIII; Provisional 95.16
PRK14811269 formamidopyrimidine-DNA glycosylase; Provisional 94.49
PRK13945282 formamidopyrimidine-DNA glycosylase; Provisional 94.47
TIGR00577272 fpg formamidopyrimidine-DNA glycosylase (fpg). All 94.41
COG0266273 Nei Formamidopyrimidine-DNA glycosylase [DNA repli 92.42
PRK14810272 formamidopyrimidine-DNA glycosylase; Provisional 87.99
PF0683192 H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom 87.4
PF00416107 Ribosomal_S13: Ribosomal protein S13/S18; InterPro 81.21
>KOG2030 consensus Predicted RNA-binding protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-185  Score=1596.44  Aligned_cols=891  Identities=47%  Similarity=0.700  Sum_probs=708.1

Q ss_pred             ccCCCCHHHHHHHHHHHhhhcCCceeEEEecCCCEEEEEEecCCCCccCCCCceEEEEEeccceEEeccccCCCCCCCCH
Q 001312            2 VKVRMNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVRLHTTAYARDKKNTPSG   81 (1102)
Q Consensus         2 mK~rmsslDv~aiv~EL~~L~G~RI~nIY~~~~~~~llk~~~~~g~~~~g~~~k~~LliesG~RiHlT~~~r~k~~~Ps~   81 (1102)
                      |||||++|||.+.|+||+.|.|+||+|||++++++|||||.++       +    .|+++||+|||+|.+.|+++.+||+
T Consensus         1 mk~r~~tldi~~~v~elk~L~g~r~~niYdi~~ktyl~K~~~~-------d----~ll~e~GvRih~T~~~~ek~~tpSG   69 (911)
T KOG2030|consen    1 MKQRFNTLDIAATVAELKPLVGMRVNNIYDISNKTYLIKFSNK-------D----ILLVESGVRIHLTQFDQEKSTTPSG   69 (911)
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhhhhceeeccccEEEEEecCC-------c----eEEeeccceeeeeeccccCCCCcch
Confidence            8999999999999999999999999999999999999999987       2    7999999999999999999999999


Q ss_pred             HHHHHHHHccCCceeEEEeeCCCeEEEEEEeeCCceEEEEEEeccCceEEEEcCCCceEeeecccccCCCccccccCCcc
Q 001312           82 FTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGMNAHYVILELYAQGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHRY  161 (1102)
Q Consensus        82 F~m~LRKhL~g~RL~~V~Q~g~DRII~~~F~~G~~~~~LilEL~grgNIILtD~e~~IL~~lR~v~~~~~~~~i~~g~~Y  161 (1102)
                      |||+|||||+..||++|+|+|+||||+|+||.|+..+|||||||++|||||||.+++||.+||.++.+....+.+++++|
T Consensus        70 F~~kLRKhik~kRledv~Q~g~DRivvlqfG~g~~~~~lvLE~~d~GNviLtdqe~~i~~llrv~~dd~~~~~~~~rer~  149 (911)
T KOG2030|consen   70 FSMKLRKHIKEKRLEDVRQVGFDRIVVLQFGTGDDEGYLVLEFFDRGNVLLTDQELRILQLLRVRTDDSESSRSASRERF  149 (911)
T ss_pred             HHHHHHHHHhHhhhchhhhcCcceEEEEEecCCCccceEEEEecCCCceEEecccceeeeEEeeeeccccchhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987777888999999


Q ss_pred             cCccccccccCChhhHHHhhccCCCCCCCCCCCccCCCCCcccccccccCCCCCCCccccccccCCCCCCCccCCchhHH
Q 001312          162 PTEICRVFERTTASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQPTLK  241 (1102)
Q Consensus       162 p~~~~~~~~p~~~~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~lk  241 (1102)
                      ++..+..+..-+.+.+....                +..                   +|.         .+...+.++.
T Consensus       150 ~~s~~e~~~~k~~~~le~s~----------------dlk-------------------~~~---------~~~q~g~~~~  185 (911)
T KOG2030|consen  150 DFSAKERNEMKSVKKLEKSG----------------DLK-------------------ALE---------PKDQNGITLE  185 (911)
T ss_pred             chhhhhhhhccccchhhhcc----------------hHH-------------------Hhh---------ccCccccchh
Confidence            88765544332222221100                000                   000         1112346788


Q ss_pred             HHHhhhcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecccCCCCCCC
Q 001312          242 TVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYILMQNKHLGKDHP  321 (1102)
Q Consensus       242 ~~L~~~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~~~~~~~l~~~~~~p~gyi~~~~~~~~~~~~  321 (1102)
                      ++|...+++||...+|++..++..+..+.+....+++.++..|.++++.++.|+.++.++...|.|||.+.....+.   
T Consensus       186 ~il~~~~~~g~sk~k~~v~~~~~~~~sKsse~~~~~~~~i~~l~e~v~~~eE~~~elit~~~~~~Gyi~~~k~~~~~---  262 (911)
T KOG2030|consen  186 SILHIETKEGPSKIKHIVLDMKKGQLSKSSENIKLFDSEIKKLQEAVKDQEEEDRELITGKLGSKGYILEEKEKKPI---  262 (911)
T ss_pred             hhhhhhccCCCccchhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCcccchhHHhhcccCC---
Confidence            99999999999999999999998887775555567788999999999999999999999988899999766543221   


Q ss_pred             CCCCCCCCccceeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001312          322 PTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKIESQRAEQQHKAKEDAAFHKLNKIHMDQENRVHTLKQ  401 (1102)
Q Consensus       322 ~~~~~~~~~~y~~F~Pf~l~q~~~~~~~~f~sfn~avDeffs~~e~qk~~~~~~~~e~~~~kKLek~~~~qe~ri~~L~~  401 (1102)
                          +.....|.+||| .+.||...++..|++|++|+|+|||.+++|+.+++....+..+.+||++++++|+++++.|++
T Consensus       263 ----s~~~~~y~~f~p-~~~~fKs~~~k~fetf~ea~Def~S~IEsqk~~lr~~~~E~qa~kKld~vr~Dq~~rvq~Lqq  337 (911)
T KOG2030|consen  263 ----STKEFIYDEFHP-LGVQFKSEPVKKFETFNEAVDEFFSTIESQKSELRVKNQELQAEKKLDKVRKDQKERVQELQQ  337 (911)
T ss_pred             ----Cccceeeccccc-cccccccchhhhccchhhHHHHHHHHHhhhhHHHHHHhhHhHHHhhhhcchhhHHHHHHHHHH
Confidence                122578999999 778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcccccccccccCceEEEEccCCCCCCcc
Q 001312          402 EVDRSVKMAELIEYNLEDVDAAILAVRVALANRMSWEDLARMVKEERKAGNPVAGLIDKLYLERNCMSLLLSNNLDEMDD  481 (1102)
Q Consensus       402 ~~e~~~~kaeLI~aN~~~V~~ai~~v~~~~a~g~~W~~i~~li~~~~~~gnpvA~~I~~l~l~~n~itl~L~d~~d~~~~  481 (1102)
                      .++.++++|+||+.|..+|+.+|.+|++++++||+|.+|.+|++.+|++|||||..|.+++|+.|++|+.|.|+|+|+||
T Consensus       338 ~qe~~~~kAelIe~N~eLVe~~il~I~s~la~~m~W~dieKLik~eqKkGn~vAk~i~~l~l~~n~~t~~L~d~~dd~~d  417 (911)
T KOG2030|consen  338 VQELNRRKAELIEPNPELVEAAILAIQSALAQQMDWKDIEKLIKSEQKKGNPVAKSIDKLKLEKNEATLRLKDPEDDNDD  417 (911)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHccCCcHhHHHHHHHHHhcCchHhhhhhHHHHhhhhheeecCCcccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997777


Q ss_pred             cccCCCcEEEEeCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHhhhhcccccCce
Q 001312          482 EEKTLPVEKVEVDLALSAHANARRWYELKKKQESKQEKTITAHSKAFKAAEKKTRLQILQEKTVANISHMRKVHWFEKFN  561 (1102)
Q Consensus       482 ~~~~~~~~~I~LDl~lS~~~NA~~YY~k~Kka~~K~ekt~~a~~kalk~aEkk~~~~L~~~~~~~~l~~iRk~~wfEKF~  561 (1102)
                      +..+.+.+.|+||++||+|+||++||.++|+++.|+++|..++++||++++.|++++|++.+++..|..+|++|||||||
T Consensus       418 e~k~~e~~~VeiDLslsA~aNArr~y~~kk~aa~K~kKT~~a~eKAlK~~e~Ki~q~lk~~~~~~~i~k~Rk~~wFEKf~  497 (911)
T KOG2030|consen  418 EKKSSEVIVVEIDLSLSAFANARRYYEMKKEAAEKIKKTVDASEKALKSAERKIEQQLKQVKTVSRIKKIRKVYWFEKFH  497 (911)
T ss_pred             hhccccceeeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceeehhee
Confidence            76777788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCceEEecCCchhhHHHHHhhcCCCcEEEEecCCCCcEEEEeCCCCCCCCCHHHHHHHHHHHhHhcccccCCCcc
Q 001312          562 WFISSENYLVISGRDAQQNEMIVKRYMSKGDVYVHADLHGASSTVIKNHRPEQPVPPLTLNQAGCFTVCHSQAWDSKMVT  641 (1102)
Q Consensus       562 wFiSSdGylVi~GRda~QNE~Lv~ky~~~~Diw~HAdi~GAshVIIK~~~~~~~ip~~tL~eAA~lAa~ySkAw~s~~v~  641 (1102)
                      |||||+|||||+||||||||+||+|||+|+|||||||+||||||||||+ ++.+|||.||.|||+||+|||+||++++|+
T Consensus       498 wFiSSEg~LVi~GrdaqQnEllvkky~~~~DiY~had~~gaSsviIkN~-~~~eipp~TL~eAg~ma~~~S~aWdakvvs  576 (911)
T KOG2030|consen  498 WFISSEGYLVIGGRDAQQNELLVKKYLEPGDIYVHADLHGASSVIIKNP-PKTEIPPKTLEEAGSMALCYSKAWDAKVVS  576 (911)
T ss_pred             EEEecCcEEEEcCCChhhhhHHHHhhCCCCCeEEecccCCCceEEEeCC-CCCCCChhhHHHHHHHHhHHhhhhcccccc
Confidence            9999999999999999999999999999999999999999999999995 899999999999999999999999999999


Q ss_pred             eeEEEeceeccccCCCCeeeccCcEEEeeccccCCCCCceeEEEEEEEecccccccccccccccCccCCCCCCCCCCCCC
Q 001312          642 SAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEGMDDFEDSGHHK  721 (1102)
Q Consensus       642 ~a~wV~~~QVsK~apsGeyL~~GsFmIrGkkn~lpp~~L~mg~g~~f~~~~~~~~~h~~~r~~~~~~~~~~~~~~~~~~~  721 (1102)
                      ++|||+++|||||||||||||+||||||||||||||++|+|||||||+||++++++|.++|+++.+++...+.+      
T Consensus       577 saWwv~~dqVSKtaptgeyL~~GSFmIrgkkN~lpp~~LvmG~GlLfrldes~~E~~~~~r~~~~eee~~~~~e------  650 (911)
T KOG2030|consen  577 SAWWVYPDQVSKTAPTGEYLPTGSFMIRGKKNFLPPHQLVMGLGLLFRLDESSIERHLGERKVEEEEEKEEDEE------  650 (911)
T ss_pred             cceEEecccccccCCCCccccccceEEecccCCCCchhheecceeEEEeccchhhhhhhhHHHHHHHhhhcccc------
Confidence            99999999999999999999999999999999999999999999999999999999999999886655442210      


Q ss_pred             CCCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCcchhhcccccCCCCCcchhhhhhh
Q 001312          722 ENSDIESEKDDTDEKPVAESLSVPNSAHPAPSHTNASNVDSHEFPAEDKTISNGIDSKIFDIARNVAAPVTPQLEDLIDR  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1102)
                              .   +..++..+         .++..+.+....+++|  ...++..                          
T Consensus       651 --------~---e~~ee~~s---------~~~e~~~~~~s~~e~~--~~ev~~~--------------------------  682 (911)
T KOG2030|consen  651 --------P---ELMEEVES---------KTSEIPEEVISNDEFP--VNEVKGR--------------------------  682 (911)
T ss_pred             --------h---hhhhhccc---------ccccCCcccccccccc--ccccccc--------------------------
Confidence                    0   00000000         0000000000001111  0000000                          


Q ss_pred             hccCCccCCCCCcccccccccCccccccccccccccCCCCCCchHHHHhhhcCCCCCCCCchhhhhhhhcCCCCCCCccc
Q 001312          802 ALGLGSASISSTKHGIETTQFDLSEEDKHVERTATVRDKPYISKAERRKLKKGQGSSVVDPKVEREKERGKDASSQPESI  881 (1102)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  881 (1102)
                             ...|+         ..           ....++.+....++..++.+..+...+....++..-.....++-..
T Consensus       683 -------~~~Gk---------~~-----------~~~~~~~~~~~~~~~~~k~~s~~~~~~n~~~~k~~~~e~~~~~is~  735 (911)
T KOG2030|consen  683 -------EKTGK---------NV-----------QEESKTFIGKGPKREKKKVQSASKEEDNVGRAKQRIGESSVQPISD  735 (911)
T ss_pred             -------ccCCc---------ch-----------hhhhhhhhhcCccchhhhccccccchhhhhHHHHhhhhcccccccc
Confidence                   00000         00           0011222222222322332222111111111000000011111111


Q ss_pred             ccccccCCCCCcccchhhhhHHhhhhcCCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccCCCCCCCCCCcchhhhh
Q 001312          882 VRKTKIEGGKISRGQKGKLKKMKEKYGDQDEEERNIRMALLASAGKVQKNDGDPQNENASTHKEKKPAISPVDAPKVCYK  961 (1102)
Q Consensus       882 ~~~~~~~~~~~~RG~k~K~KKi~~KY~dQDEEdR~l~m~lLgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  961 (1102)
                      .+.+   ..+.+||||||+|||+  |+||||+||+|+|+||++.|+ .+...++++...       +.+.+.+. ..++ 
T Consensus       736 ep~~---~~~~~rg~kgklkkmk--y~dQd~~er~~r~~~l~~~~k-ek~~v~~~ev~~-------~~~~~~~~-~k~~-  800 (911)
T KOG2030|consen  736 EPSN---KNQVKRGQKGKLKKMK--YADQDEDERELRMELLKSSGK-EKQQVEEKEVMK-------PEESEDEE-NKRE-  800 (911)
T ss_pred             CCcc---hHHHHHhhhhhhhhhh--hcccCchHHHHHHHhcccccc-cccccccccccC-------chhhchhh-cchh-
Confidence            1111   1244899999999998  999999999999999999887 222222111000       00000000 0000 


Q ss_pred             hhhcCCCCccCCCCCCCCCCCCCCCCCCCCcchhHHhHhhhhhhhhcccchhhhccccccccccCCCCCCCeEEeecccc
Q 001312          962 CKKAGHLSKDCKEHPDDSSHGVEDNPCVGLDETAEMDKVAMEEEDIHEIGEEEKGRLNDVDYLTGNPLPSDILLYVIPVC 1041 (1102)
Q Consensus       962 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~e~~~~~~~ld~Ltg~P~~~D~ll~aiPVc 1041 (1102)
                      ...+.|                              ..+.+.+.+..+.       ...|+-|+.   ++|+||||||||
T Consensus       801 k~~~~~------------------------------~~ve~~~~d~~~~-------~ee~~~~~d---~~D~ll~avPv~  840 (911)
T KOG2030|consen  801 KLEAPK------------------------------FKVEEKERDEYEV-------KEELKPLID---KGDTLLFAVPVV  840 (911)
T ss_pred             hhhccc------------------------------ccccchhhhccch-------hhhcccccC---CCceeEEeeccc
Confidence            000000                              0111111111111       222333333   999999999999


Q ss_pred             chhhhhccCeeeEEeccCCccchhHHHHHHHHHHhhccCCccccchhcccccc
Q 001312         1042 GPYSAVQSYKYRVKIIPGTAKKGKGIQIFYSLLLLMLSLTPVFDIFPFQCLCS 1094 (1102)
Q Consensus      1042 APy~al~~yKyKvKl~PG~~KKGKA~k~al~~f~~~~~~~~~~~~l~~~~~~~ 1094 (1102)
                      |||+||++||||||+|||++|||||||+||++|++.+  ++||++||++|++.
T Consensus       841 aPy~Al~~ykykVKi~PGsgK~gKaak~al~~F~~~~--s~re~~lik~lk~~  891 (911)
T KOG2030|consen  841 APYNALQKYKYKVKITPGSGKKGKAAKEALNLFTKRP--SPREKELIKSLKDD  891 (911)
T ss_pred             cChHHHHhhceeEEecCCcCcccHHHHHHHHHHhcCC--ChhHHHHHHhcchh
Confidence            9999999999999999999999999999999999998  99999999999953

>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>PF11923 DUF3441: Domain of unknown function (DUF3441); InterPro: IPR021846 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity Back     alignment and domain information
>KOG2030 consensus Predicted RNA-binding protein [General function prediction only] Back     alignment and domain information
>KOG3272 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription] Back     alignment and domain information
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated Back     alignment and domain information
>PRK10445 endonuclease VIII; Provisional Back     alignment and domain information
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg) Back     alignment and domain information
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents Back     alignment and domain information
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1102
3doa_A288 Fibrinogen binding protein; structural genomics, M 9e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2bl6_A37 Nucleocapsid protein P11; lentivirus, polyprotein, 1e-04
1cl4_A60 Protein (GAG polyprotein); nucleocapsid protein, R 1e-04
1cl4_A60 Protein (GAG polyprotein); nucleocapsid protein, R 2e-04
2cqf_A63 RNA-binding protein LIN-28; CCHC zinc-finger, stru 4e-04
2ihx_A61 Nucleocapsid (NC) protein; protein-RNA complex, vi 6e-04
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} Length = 288 Back     alignment and structure
 Score =  128 bits (322), Expect = 9e-33
 Identities = 58/376 (15%), Positives = 116/376 (30%), Gaps = 99/376 (26%)

Query: 6   MNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESGVR 65
            +       V+ L+ L   R   +      T +  +            + +L +  +  R
Sbjct: 3   YDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVV-----RQNRQNHQLLLSIHPNFSR 57

Query: 66  LHTTAYARDKKNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQF----GLGMNAHY-V 120
           L  T    D    P  F    RKH+    +E ++Q+G DR I         +G   +  V
Sbjct: 58  LQLTTKKYDNPFNPPMFARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTV 117

Query: 121 ILELYA-QGNILLTDSEFTVLTLLRSHRDDDKGVAIMSRHR--YPTEICRVFERTTASKL 177
           ILE+     N++L D    ++   +    +       + +R   P               
Sbjct: 118 ILEIMGKHSNLILVDENRKIIEGFKHLTPN------TNHYRTVMPGFNYEAPPT------ 165

Query: 178 HAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDGARAKQ 237
                              +   N  + +   +       + +++               
Sbjct: 166 -------------------QHKINPYDITGAEVLKYIDFNAGNIA--------------- 191

Query: 238 PTLKTVLGEALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQD 297
              K +L +  G+ P ++  I+     + +  L E                  F++ + +
Sbjct: 192 ---KQLLNQFEGFSPLITNEIVSRRQFMTSSTLPEA-----------------FDEVMAE 231

Query: 298 VISGDIVPEGYILMQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAA 357
                  P   I  +N   GK              ++F  + LNQF   + V +++ +  
Sbjct: 232 TKL----PPTPIFHKNHETGK--------------EDFYFIKLNQFND-DTVTYDSLNDL 272

Query: 358 LDEFYS-KIESQRAEQ 372
           LD FY  + E +R +Q
Sbjct: 273 LDRFYDARGERERVKQ 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus} Length = 37 Back     alignment and structure
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Length = 60 Back     alignment and structure
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A Length = 60 Back     alignment and structure
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus} Length = 61 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1102
3doa_A288 Fibrinogen binding protein; structural genomics, M 100.0
3twl_A310 Formamidopyrimidine-DNA glycosylase 1; helix two t 95.58
2xzf_A271 Formamidopyrimidine-DNA glycosylase; hydrolase-DNA 94.92
1ee8_A266 MUTM (FPG) protein; beta sandwich, zinc finger, he 93.78
1k82_A268 Formamidopyrimidine-DNA glycosylase; protein-DNA c 93.62
3u6p_A273 Formamidopyrimidine-DNA glycosylase; DNA glycosyla 93.02
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 85.88
3j20_O148 30S ribosomal protein S13P; archaea, archaeal, KIN 81.57
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 80.8
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=2.5e-43  Score=392.15  Aligned_cols=263  Identities=19%  Similarity=0.277  Sum_probs=195.7

Q ss_pred             CCHHHHHHHHHHHhhhcCCceeEEEecCCCEEEEEEecCCCCccCCCCceEEEEEecc---ceEEeccccCCCCCCCCHH
Q 001312            6 MNTADVAAEVKCLRRLIGMRCSNVYDLSPKTYIFKLMNSSGVTESGESEKVLLLMESG---VRLHTTAYARDKKNTPSGF   82 (1102)
Q Consensus         6 msslDv~aiv~EL~~L~G~RI~nIY~~~~~~~llk~~~~~g~~~~g~~~k~~LliesG---~RiHlT~~~r~k~~~Ps~F   82 (1102)
                      ||++||++++.||..|+|+||.||||+++++++|+|++++        ++..|+|+.+   +|||+|++.+++|..||+|
T Consensus         3 ~d~~~l~a~~~EL~~l~g~ri~kIyq~~~~~l~l~l~~~~--------~~~~L~ls~~p~~~ri~lt~~~~~~p~~p~~F   74 (288)
T 3doa_A            3 YDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNR--------QNHQLLLSIHPNFSRLQLTTKKYDNPFNPPMF   74 (288)
T ss_dssp             SCHHHHHHHHHHHGGGTTCEEEEEEEEETTEEEEEEEETT--------EEEEEEEECCTTTCEEEEECC-------CCHH
T ss_pred             ccHHHHHHHHHHHHhhhCceEEEEEcCCCcEEEEEEEcCC--------CceEEEEEECCCceEEEEcCCCCCCCCCCcHH
Confidence            8999999999999669999999999999999999999864        3556666544   9999999999999999999


Q ss_pred             HHHHHHHccCCceeEEEeeCCCeEEEEEEeeCC----c-eEEEEEEeccC-ceEEEEcCCCceEeeecccccC-CCcccc
Q 001312           83 TLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGM----N-AHYVILELYAQ-GNILLTDSEFTVLTLLRSHRDD-DKGVAI  155 (1102)
Q Consensus        83 ~m~LRKhL~g~RL~~V~Q~g~DRII~~~F~~G~----~-~~~LilEL~gr-gNIILtD~e~~IL~~lR~v~~~-~~~~~i  155 (1102)
                      ||.|||||+|+||++|+|+|+||||.|+|+.++    . .|+||+||||+ |||||||++++||+++|+++.. .+.|.|
T Consensus        75 ~m~LRk~L~g~ri~~i~Q~~~DRIv~~~f~~~~e~g~~~~~~Li~El~gr~SNiIL~d~~~~Il~~lr~v~~~~~~~R~i  154 (288)
T 3doa_A           75 ARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTV  154 (288)
T ss_dssp             HHHHHHHHTTCEEEEEEESTTSSEEEEEEEEECTTSCEEEEEEEEECCGGGCEEEEEETTCBEEEESSCBCC-----CCB
T ss_pred             HHHHHHHhCCCEEEEEEECCCceEEEEEEeeccccCCccceEEEEEEcCCCceEEEEcCCCcEeeeeeccCcccccccee
Confidence            999999999999999999999999999999743    2 79999999999 6999999999999999999874 345789


Q ss_pred             ccCCcccCccccc-cccC--ChhhHHHhhccCCCCCCCCCCCccCCCCCcccccccccCCCCCCCccccccccCCCCCCC
Q 001312          156 MSRHRYPTEICRV-FERT--TASKLHAALTSSKEPDANEPDKVNEDGNNVSNASKENLGGQKGGKSFDLSKNSNKNSNDG  232 (1102)
Q Consensus       156 ~~g~~Yp~~~~~~-~~p~--~~~~l~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  232 (1102)
                      .+|.+|.+|+.+. .+|+  +.+.+.+.+.                                                  
T Consensus       155 ~pG~~Y~~Pp~~~k~~p~~~~~e~~~~~l~--------------------------------------------------  184 (288)
T 3doa_A          155 MPGFNYEAPPTQHKINPYDITGAEVLKYID--------------------------------------------------  184 (288)
T ss_dssp             STTSBCCCCCCCCCBCGGGCCHHHHGGGCC--------------------------------------------------
T ss_pred             cCCCcccCCccccCCCcccCCHHHHHHHHh--------------------------------------------------
Confidence            9999997776532 3343  2333332221                                                  


Q ss_pred             ccCCchhHHHHHh-hhcCCCHHHHHHH-HHHcCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEE
Q 001312          233 ARAKQPTLKTVLG-EALGYGPALSEHI-ILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKFEDWLQDVISGDIVPEGYIL  310 (1102)
Q Consensus       233 ~~~~~~~lk~~L~-~~~g~gp~laeei-~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~~~~~~~l~~~~~~p~gyi~  310 (1102)
                        .....+.+.|. .+.||||.+++|+ |+|+|.+.               ..|+.+   +.++++.+.. ...|.  ++
T Consensus       185 --~~~~~l~~~l~~~~~G~s~~la~El~~~ra~~~~---------------~~l~~~---~~~~~~~~~~-~~~p~--i~  241 (288)
T 3doa_A          185 --FNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTS---------------STLPEA---FDEVMAETKL-PPTPI--FH  241 (288)
T ss_dssp             --GGGCCHHHHHHHHBTTCCHHHHHHHHTTSSSCST---------------THHHHH---HHHHHHHHTS-CCCCE--EC
T ss_pred             --hCcchHHHHHHHHcCCCCHHHHHHHHHHHcCCcH---------------HHHHHH---HHHHHHHhhc-CCCcE--EE
Confidence              01122444454 5569999999999 99998531               233444   5666777764 33343  31


Q ss_pred             ecccCCCCCCCCCCCCCCCccceeeeeccccccccccccccccHHHHHHHHHHHH
Q 001312          311 MQNKHLGKDHPPTESGSSTQIYDEFCPLLLNQFRSREFVKFETFDAALDEFYSKI  365 (1102)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~y~~F~Pf~l~q~~~~~~~~f~sfn~avDeffs~~  365 (1102)
                       ..+ .             ....+|+||++.+|.+ ....|+|||+|||+||...
T Consensus       242 -~~~-~-------------~~~~~f~~~~l~~~~~-~~~~f~s~s~~Ld~yy~~k  280 (288)
T 3doa_A          242 -KNH-E-------------TGKEDFYFIKLNQFND-DTVTYDSLNDLLDRFYDAR  280 (288)
T ss_dssp             --CT-T-------------TCCCCEESSCCTTCCS-CCEECSSHHHHHHHHTCC-
T ss_pred             -eCC-C-------------CCceEEEEEechhccC-CceeCCCHHHHHHHHHHHh
Confidence             210 0             0235899999999876 6678999999999999875
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A Back     alignment and structure
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* Back     alignment and structure
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... Back     alignment and structure
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1102
d1dsqa_26 g.40.1.1 (A:) Nucleic acid binding protein p14 {Mo 0.001
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]} Length = 26 Back     information, alignment and structure

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: Nucleic acid binding protein p14
species: Mouse mammary tumor virus [TaxId: 11757]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 958 VCYKCKKAGHLSKDCKE 974
           VC+ C K GH+ +DCKE
Sbjct: 4   VCFSCGKTGHIKRDCKE 20

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1102
d2hkja178 Topoisomerase VI-B subunit middle domain {Archaeon 95.07
d1r2za194 DNA repair protein MutM (Fpg) {Bacillus stearother 92.31
d1tdza188 DNA repair protein MutM (Fpg) {Lactococcus lactis 91.21
d1ee8a189 DNA repair protein MutM (Fpg) {Thermus thermophilu 91.08
d1k82a188 DNA repair protein MutM (Fpg) {Escherichia coli [T 89.84
d1k3xa189 Endonuclease VIII {Escherichia coli [TaxId: 562]} 88.66
d2uubm1125 Ribosomal protein S13 {Thermus thermophilus [TaxId 82.82
d2gy9m1114 Ribosomal protein S13 {Escherichia coli [TaxId: 56 81.94
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Topoisomerase VI-B subunit middle domain
domain: Topoisomerase VI-B subunit middle domain
species: Archaeon Sulfolobus shibatae [TaxId: 2286]

Probab=95.07  E-value=0.015  Score=49.65  Aligned_cols=50  Identities=30%  Similarity=0.425  Sum_probs=40.8

Q ss_pred             hHHHHHhh-hcCCCHHHHHHHHHHcCCCCCCcccccccCCHHHHHHHHHHHHHH
Q 001312          239 TLKTVLGE-ALGYGPALSEHIILDTGLVPNMKLSEVNKLEDNAIQVLVLAVAKF  291 (1102)
Q Consensus       239 ~lk~~L~~-~~g~gp~laeei~~~agi~~~~~~~~~~~l~~~~~~~L~~al~~~  291 (1102)
                      .+..++.. +.|+|+.+++|+|+++|++|..++.   .++++++..|+++++++
T Consensus        25 k~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~---~L~~~e~~~L~~air~~   75 (78)
T d2hkja1          25 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVK---NLTEEEITRLVETFKKY   75 (78)
T ss_dssp             BHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGG---GCCHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHhcccCHHHHHHHHHHhCCCcccccc---cCCHHHHHHHHHHHhhh
Confidence            34445544 5599999999999999999998877   58999999999887653
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure