Citrus Sinensis ID: 001328

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------110

MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRFKDLMKEVQTLNKEKEAIEKRLTEAIKNQTAFELDVKDIQERISGNSQARDDAKKQLRSLLEEIDDSSKELDKANTLYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKESELCAEIDKLKAEVEKAEKSLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTINAREEEVEKLISQLDQKITEHVTEQQKTDAKRAHDKSELEQLKQDIANANKQKQIISKALENKEKSLADVRTQLDQLEASMAMKQAEMNTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLTTNLMRRKQELEALISSAENDVMLSEAESKKQELADAKSFVEDARQELKRVSDSIVQLTKELNKIKDEKTKLKTLEDNYERKLQDDARELEQLLSRRNILLAKQEEYSKKIRELGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMNSFAFIKIELLNI

ccEEEEEEcccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEcccccccccccEEEEEEEEEccccEEEEccccccHHHHHHHHHHccccccccccEEccccHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccCEEEccccccccHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHcccEEEEccHHHHHHHHHcccccEEEccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHccc

MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKRQQIIQVVKYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARQ*****************************************************************************************************************YENKCIE***I************IL*************************************************************************************************WV****LCAEI*********************VRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTIN*******************************************************************************************IDHLSL**KNLLSRLNPEITELKEKLITCRTDRIEYETR**********************************************************************************************************ILL***EEYSKKIRELGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVNKKALDQYVNFTEQREELQRRQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKK*********************VEKYIGVKVKACTSVKMNSFAFIKIELLNI

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MHIKQVIIEGFKSYREQIATEPFSPQVNCVVGANGSGKTNFFHAIRFVLSDIFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQDTGNKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKQRKSLEYTIYDKELHDARQKLLEVDDTRTRFSDESAKMYNSLLDAQEKSKDSDKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTAFELDVKDIQERISGNSQAxxxxxxxxxxxxxxxxxxxxxxxxxxxxYENKCIEEKKITKDIMEREKQLSILYQKQGRATQFSSKDARDKWLQKEIDDLERVHSSNLKQDQKLQEEIQRLKGDLKERDEYIESRKREIAYLESSISQSREGFNNHKTQRDKMQDERKSLWVKxxxxxxxxxxxxxxxxxxxxxLDHATPGDVRRGLNSIRRICREYKIDGVYGPIIELLDCDEKFFTAVEVTAGNSLFHVVVDNDETSTKIIRHLNSLKGGRVTFIPLNRVKAPRVTYPKSNDVIPLLDRLEFSPNFKPAFAQVFARTVICRDLDVCTRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIMRNTKTxxxxxxxxxxxxxxxxxxxxxHVTEQQKTDAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMNTDLIDHLSLDEKNLLSRLNPEITELKEKLITCRTDRIEYETRKAELETNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRNILLAKQEEYSKKIRELGPLSSDAFDTYKRKGVKELLKMLHRCNEQLQQFSHVxxxxxxxxxxxxxxxxxxxxxQAELDAGDEKIKELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHGDDDDDDGPRESDVEGRVEKYIGVKVKACTSVKMNSFAFIKIELLNI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Structural maintenance of chromosomes protein 3	Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex plays also an important role in spindle pole assembly during mitosis and in chromosomes movement (By similarity). Essential protein plant viability. Required for chromosome segregation (e.g. sister chromatid alignment) and cell division during embryogenesis.	confident	Q56YN8
Structural maintenance of chromosomes protein 3	Involved in chromosome cohesion during cell cycle and in DNA repair. Central component of cohesin complex. The cohesin complex is required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate.	probable	P47037
Chromosome segregation protein sudA	Involved in chromosome segregation in mitosis.	probable	Q00737

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1I84, chain S
Confidence level:very confident
Coverage over the Query: 121-148
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Template: 1W1W, chain A
Confidence level:very confident
Coverage over the Query: 1-159
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Template: 2WD5, chain B
Confidence level:very confident
Coverage over the Query: 521-677
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Template: 1W1W, chain A
Confidence level:very confident
Coverage over the Query: 984-1006,1019-1043,1077-1087
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Template: 3NA7, chain A
Confidence level:confident
Coverage over the Query: 313-378
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Template: 2EFR, chain A
Confidence level:probable
Coverage over the Query: 273-347
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Template: 2B9C, chain A
Confidence level:probable
Coverage over the Query: 245-252
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Template: 2DFS, chain A
Confidence level:probable
Coverage over the Query: 272-354,413-497
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Template: 2W00, chain A
Confidence level:probable
Coverage over the Query: 716-893
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Template: 2DFS, chain A
Confidence level:probable
Coverage over the Query: 272-354,413-497
View the alignment between query and template
View the model in PyMOL