Citrus Sinensis ID: 001352

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090---
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
cccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHcccccccccccHHHEHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccCEECccccccCEEECcccccCEEECccccccEEccccccccEEEEECcccccCEECccccCEEECcccccCECccccccEEEECccccccCEEEEccccEEEECcccccEEEEEccccccEEEEEEcccccEEEEEECccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEECcccccEEEEEEccccEEEEEcccccEEEEECcccccEEEEEEcccccEEEEECcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEECccccEEEEccccccccccEECccccEEEccccEEEccccccEEEEEccccccEEEEEEEEcccEEEEEEEcccEEEEEECccccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEECccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEECccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEECccccEEEEEcccccEEEEEccccccccccccccCCcEEEEECcccccEEEEECccccEEEEcccccccccccccccccccccccccccccccccc
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
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MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKVAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Topless-related protein 1 Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.probableQ0WV90

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 329-373,393-674,697-766,790-1007
View the alignment between query and template
View the model in PyMOL
Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 393-674,697-768,792-1060
View the alignment between query and template
View the model in PyMOL
Template: 1ERJ, chain A
Confidence level:very confident
Coverage over the Query: 333-376,395-654
View the alignment between query and template
View the model in PyMOL
Template: 2OAJ, chain A
Confidence level:confident
Coverage over the Query: 393-680,691-748,760-768,787-1088
View the alignment between query and template
View the model in PyMOL
Template: 3V9F, chain A
Confidence level:confident
Coverage over the Query: 336-662,728-769,782-784,801-1062
View the alignment between query and template
View the model in PyMOL
Template: 1UUJ, chain A
Confidence level:probable
Coverage over the Query: 5-58
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View the model in PyMOL
Template: 2NXP, chain A
Confidence level:probable
Coverage over the Query: 71-129
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3ei3, chain Aconfident Alignment | Template Structure